ID:

dwi_1320

 Coordinate:

scf2_1100000004521:8054211-8054361 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-31.5 -31.5 -31.4

Flybase annnotation

CDS [Dwil\GK15413-cds]; exon [dwil_GLEANR_15666:2]; intron [Dwil\GK15413-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGCTGCCTCCAACAAACCACCTGCCATTTCCAAAAGAACTGTCACTAAAGTGATTAGTGACGGTGTGAACAGTGTTTATCGAACAGTGGCTAATGTAGCAGCTGCTAAAATAAACTTTTTTAGAAATCTTACTGGATGGAACAAATCCGAAAACCCAGTTGCTAACGCCACAAAACCATTAGCAAACACGAGAAAACCAGTTAATTATTCGCAAAGACCAGTTACTTACTTAGAGGAACAACATACTTAC
**************************************************(((.((..(((.(((((((((...))))))......(((((.....(((((((((((((((.......)))))).........(((((.......)))))......)))))))))..)))))...))).)))..)).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 V117
male body		 M020
head
 V118
embryo
..............................................................CGTGTGAACAGTGTTGATC.......................................................................................................................................................................... 19 2 1 5.00 5 4 1 0 0
..............................................................CGTGTGAACAGTGGTTATC.......................................................................................................................................................................... 19 2 1 3.00 3 3 0 0 0
..............................................................CGTGTGAACAGTGTTGAT........................................................................................................................................................................... 18 2 3 2.00 6 6 0 0 0
.......................................................................................................................................................................................................AGTTAATTATTCGCAAAGAC................................ 20 0 1 2.00 2 0 0 2 0
....................................................................................................................................................................................................ACCAGTTAATGATTCGCGAT................................... 20 3 5 1.20 6 0 0 6 0
............................................ACTAAAGTGATTAGTGACGGTGTGA...................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
...............................................................GTGTGAACAGTGTTGATC.......................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0
............................................................................TTATCGAACAGTGGCTAATG........................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
.............................................CTAAAGTGATTAGTGACGGTG......................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.......................................................TAGTGACGGTGTGAACAGTGT............................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...............................................AAAGTGATTAGTGACGGTGTG....................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.............................................................TCGTGTGAACAGTGTTGATC.......................................................................................................................................................................... 20 3 4 0.75 3 3 0 0 0
...............................................................GTGTGAACAGTGGTAATC.......................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0
...........AACAAACCGGCTGGCATTTCC........................................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0
..............................................................CGTGTGAACAGTGTTGATCA......................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0
..............................................................CGTGTGAACAGGGTTGATC.......................................................................................................................................................................... 19 3 7 0.14 1 1 0 0 0
.....................................................ATTTGTGACCGTGCGAACA................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1
.....................................................................................AGTGGCTGATGGAGCAGC.................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0

Anti-sense strand reads

TACGACGGAGGTTGTTTGGTGGACGGTAAAGGTTTTCTTGACAGTGATTTCACTAATCACTGCCACACTTGTCACAAATAGCTTGTCACCGATTACATCGTCGACGATTTTATTTGAAAAAATCTTTAGAATGACCTACCTTGTTTAGGCTTTTGGGTCAACGATTGCGGTGTTTTGGTAATCGTTTGTGCTCTTTTGGTCAATTAATAAGCGTTTCTGGTCAATGAATGAATCTCCTTGTTGTATGAATG
**************************************************(((.((..(((.(((((((((...))))))......(((((.....(((((((((((((((.......)))))).........(((((.......)))))......)))))))))..)))))...))).)))..)).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
..........GTTGTGTGGTAGACGGTA............................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0
............................................................................................................................................................................TTTTGGTGATCGTTGGGGCT........................................................... 20 3 14 0.07 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004521:8054161-8054411 + dwi_1320 ATGCTGCCTCCAACAAACCACCTGCCATTTCCAAAAGAACTGTCACTAAAGTGATTAGTGACGGTGTGAACAGTGTTTATCGAACAGTGGCTAATGTAGCAGCTGCTAAAATAAACTTTTTTAGAAATCTTACTGGATGGAACAAATCCGAAAACCCAGTTGCTAACGCCACAAAACCATTAGCAAACACGAGAAAACCAGTTAATTATTCGCAAAGACCAGTTACTTACTTAGAGGAACAACATACTTAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATGCTGCCTCCAACAAACCACCTGCCATTTCCAAAAGAACTGTCACTAAAGTGATTAGTGACGGTGTGAACAGTGTTTATCGAACAGTGGCTAATGTAGCAGCTGCTAAAATAAACTTTTTTAGAAATCTTACTGGATGGAACAAATCCGAAAACCCAGTTGCTAACGCCACAAAACCATTAGCAAACACGAGAAAACCAGTTAATTATTCGCAAAGACCAGTTACTTACTTAGAGGAACAACATACTTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................AGTTAATTATTCGCAAAGAC................................2012.00220000
............................................ACTAAAGTGATTAGTGACGGTGTGA......................................................................................................................................................................................2511.00100100
............................................................................TTATCGAACAGTGGCTAATG...........................................................................................................................................................2011.00100100
.............................................CTAAAGTGATTAGTGACGGTG.........................................................................................................................................................................................2111.00100100
.......................................................TAGTGACGGTGTGAACAGTGT...............................................................................................................................................................................2111.00100100
...............................................AAAGTGATTAGTGACGGTGTG.......................................................................................................................................................................................2111.00100100

Generated: 05/18/2015 at 01:11 AM