ID:

dwi_1246

 Coordinate:

scf2_1100000004521:4484222-4484518 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-89.1 -89.1 -89.1

Flybase annnotation

CDS [Dwil\GK14901-cds]; exon [dwil_GLEANR_15187:1]; exon [dwil_GLEANR_15187:2]; CDS [Dwil\GK14901-cds]; intron [Dwil\GK14901-in]

No Repeatable elements found

mature
  1. scf2_1100000013460:668-685 -
  2. dwi_1246  scf2_1100000004521:4484334-4484351 -
  3. scf2_1100000004921:1628656-1628673 -
star

Sense Strand Reads

--------------------------------##################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAAAAAATAGTTTAATTTATTTGATACGCCATGAACTCGGCTACCAAGGTACGTGCAGAGCTTCTTAGTAGTATTTTCATCAATTGACTAAAATATTTTAACGCTTTTGCGGTATTCACTTTGTGCGGGAAAATAAAGTGGCGCGAGCGGGAGTCGAGCCTCTCGCTCCTTCGAGTAAGAGCAACAGCAATTTGTTGTTCCACGATGATAGAGGAGTGGGCGGGTGGGTGGTTAAGGGAGAGAGGGCGCGTTTGTTTTGAATTTGCAAAACAGGCGGCAGAAAACAACAACTCTGCAGGGAGATAAAAACGTATCCTTATTACTTATGTTTGTTCTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGA
**************************************************.....(((((((((((((.............((..(((((((...........(((((((((.....(((((((((........))))))))).....))))))).)).((((((((((((((((.((..(((((((((....))))))))).))..)))...))))))))).))))...)))))))..))))))))((.(((((((((((......)))))))))))))............)))))))((((((...(((((((...........)))))))..))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 V118
embryo
 V117
male body		 M020
head
 M045
female body
.........................................................................................................................................................................................................................GTGGGCGGGTGGGTGGTT.................................................................................................................................................................. 18 0 3 14.33 43 25 7 8 0 3
..........................................CTACCAAGGTACTTGCAGAGCT............................................................................................................................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0
.............................................................................................................................................................................................................................GCGGGTGGGTGGTTAAGGGAGAG......................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
....................ATTTGATACGCCATGAAC....................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................................................................TACCAAGGTTGGGGAGATTTTCACGGC.............................. 27 3 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................................GTGGGCGGGTGGGTGGTA.................................................................................................................................................................. 18 1 7 0.29 2 1 0 1 0 0
.........................................................................................................................................................................................................................GTGGGCGGGTGGGTTGTT.................................................................................................................................................................. 18 1 4 0.25 1 0 1 0 0 0
.........................................................................................................................................................................................................................GTGGGCGGGGGGGTGGTT.................................................................................................................................................................. 18 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................................................GTGGGCGGGTGGGTAGTT.................................................................................................................................................................. 18 1 4 0.25 1 0 1 0 0 0
........................................................................................................................................................................................................................CGTGGGCGGGTGGGTGGTT.................................................................................................................................................................. 19 1 5 0.20 1 0 1 0 0 0
.........................................................................................................................................................................................................................GTGGGCGGGTAGGTGGTT.................................................................................................................................................................. 18 1 8 0.13 1 1 0 0 0 0
....................................................................................................................................................................................................................GAGGAGTGGGGGGGTGGTT...................................................................................................................................................................... 19 2 9 0.11 1 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................GTGAGATTGCCACGGCCGC........................... 19 3 9 0.11 1 0 0 0 0 1
.................................TGAACACAGCTACCCAGG.......................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 2 0
....................................................................................................................................................................................................................................................................................................CTCTGCCGGGAGAGAAAAG...................................................................................... 19 3 20 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................................................ATGGGCGGGTGGGTGGTT.................................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................................................AGAGAGCGAGGGCGCGTATG............................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................................................................GTGGGCGGGTGGGTTGTA.................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0
.............................................................................................................................................GGCGCGAGCGGGCGGCGT.............................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TGTTTTTTTATCAAATTAAATAAACTATGCGGTACTTGAGCCGATGGTTCCATGCACGTCTCGAAGAATCATCATAAAAGTAGTTAACTGATTTTATAAAATTGCGAAAACGCCATAAGTGAAACACGCCCTTTTATTTCACCGCGCTCGCCCTCAGCTCGGAGAGCGAGGAAGCTCATTCTCGTTGTCGTTAAACAACAAGGTGCTACTATCTCCTCACCCGCCCACCCACCAATTCCCTCTCTCCCGCGCAAACAAAACTTAAACGTTTTGTCCGCCGTCTTTTGTTGTTGAGACGTCCCTCTATTTTTGCATAGGAATAATGAATACAAACAAGAAAAAGCGTCCAACCCCTCTAAAAGTGCCGGCGACCTGTCCGTAAGTCATCTAACCCTCT
**************************************************.....(((((((((((((.............((..(((((((...........(((((((((.....(((((((((........))))))))).....))))))).)).((((((((((((((((.((..(((((((((....))))))))).))..)))...))))))))).))))...)))))))..))))))))((.(((((((((((......)))))))))))))............)))))))((((((...(((((((...........)))))))..))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V117
male body
.......................................................................................................................................................................................................................................................................................................................................TACAAACAAGAAAAAGCGTCC................................................. 21 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................................................................................................................................................CCCCCAAAAGTGCCGGCT........................... 18 3 20 0.80 16 14 1 1
..................................................................................................................................................................................................................................................................................CCGCCGTCTTTCGTTGTTTA....................................................................................................... 20 2 3 0.33 1 0 1 0
........................................................................................................................................................CTAAGCTTGGAGACCGAGG.................................................................................................................................................................................................................................. 19 3 10 0.10 1 1 0 0
....................................TGAGCCGTGGCTTCCATG....................................................................................................................................................................................................................................................................................................................................................... 18 3 18 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004521:4484172-4484568 - dwi_1246 ACAAAAAA-ATAGTTTAATTTATTT-------GATACGCCATGAACTCGGCTACCAAGGTACGTGC-AG--------AGCTTCTTAGTAGT--------------------------ATTTTC--ATCA-------------ATTGAC-TAAAATATT--------------------------------------TTAACGCTTTT-GCGGTATTCA--CTTTGTGCGG-G--AAA-ATAAA-GTGGCGCGAGCGGGAGTCGA-------GC----------------------------------CTCTCGCTCCTTCGAGTAAGAGCAACAG--CAATTTGTTGTTCCACGATG--ATAGAGG----------A---------GTGGGCG-GGTGGGTGGTTAAGGGAGAGAGGGCGCGTTTGTTTTGAATTTGCAAAACAGGCGG-CAGAAAA---------CAA---------------C------------AACT-CTG------------------CA-----GGGAG-----ATAAAAACGTATCCTTAT--TAC----TTA----TGTT-------TGTT---------------------------CTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGA
droVir3 scaffold_12963:2237765-2238119 - dvi_10115 TTAAAAAAAG--TTAT------TCTGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATGTTT-AATTC-----------AGTCGCAGCTA--------------ATTGGTTGCGTCTCA--AGCG-------------GCTTTC-TAAATCACA--------------------------A--A--------------------GCGGCATTTT--ATTTGTTC---G--GAA-AATTG-TCGGCTGTG---CGCCTC-------------TG--TCAG--------------------TTC-GTCTCACTCCTTCGGCAACGAATGTTAGCGAAATTTGTTTG--CT---T--------------------T---------ATGGGGC-GA-----------------GAAGGCGCGTTTGTTTTGAATTTGCAACGCATGCAA----------GCACGAACAA---------------C------------A---GCTG------------------CC---ACA-A-------ATGC------ATCTA-AAATTT-TG---------TCCAA-----TTGTC-------------------------------TGCGCAGGTTGGGGAGATTTTCACGGCAGCGGGTCAAGCATTCAGCAGGCTCGGCGA
droMoj3 scaffold_6500:27450675-27451036 - AAAAAAAA-GTGATTC--------TGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATATTT-AAAGCACACGCAGTTTTTAAAAATTAGTTTAAGTGCATTTT----------------------------------TTCAAC-TGAAATGTC-----TCTTTTCCTA-CGTGCGTTGCA--A-----AATT------------------------------------------TTTG-GCGGCTGA-------------------GCGTCC--CTTG---------------CTCAGTTC-ATCTCACTCCTTCGAAAGCGAATGCCAGCGAAATGTTTTGCTTCATG-------------------------------------------------------------GGGCGCGTTTGTTTTGAATTTGCAACGCATGCTAAG---GCTAAACATAAACAA----------------------------AA--ACTC----GATTTGAATGC--------ACG-T-------ATAT----------A-AA----------------TATTT-----GTTGT-----------------------------TTTGCATAGGTTGGAGAAATTTTCACGGCAGCGGGCCAAGCGTTTAGCAGACTCGGCGA
droGri2 scaffold_15126:1320844-1321234 - AAAAAAAA-GTAATTC--------AGCTTA--AGTAGGCCATGAATTCGGCAACAAAGGTATGTTA-AAAGC-----------AA-------------AACGCATTTAACCGATTGCAACCCGTAC--------------GCGCCGCC-GGATG-GCAAAGA----ATG----------------------------------------CCCCAATTGAGTTTTGTGC---G--GGAAAAGTGTGCGGCTGT---GTGCGTCT--------CTGTCA--T-----------------------ATC-GCCTCACTCCTTCGGGTGCGAATGGTAGCGAAATTTTGTGTTTGTGCTTC--ATTTTG------GGGGCG---------GTGAG-----------------------AGGGCGCGTTTGTTTTGAATTTGCACCGCATGCCAAA---------------CAA------CAGCAACAAC------------AACAACTC------------------AA-----AACAAAACAGCTGA----------A-AA--TA-TAACACACAAATTAT-------TATT-------------------------------CTTGCAGGTTGGTGAAATATTTACGGCAGCGGGTCAAGCGTTCAGCCGACTCGGTGA
dp5 4_group3:6702293-6702677 + GCAAAAAA-TTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGT-----------A---------------------------------------------------------------------GTCAT-GTCGTCTGCCCCCA-CGTGA----AA--C-TCCAAATCTAACGCCCTGGGCGGCATTTG--ATTTGTGC---G--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACGTAA-------------------------ATGCCAACAAC------------AACAGCTG------------------CC-----GGCAGACGAGTTGC----------A-AT--TAC------------CCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGA
droPer2 scaffold_1:8150854-8151238 + GCAAAAAA-TTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGC-----------AGT---------------------------------------------------------------------CAT-GTCGTCTGCCCCCA-CGTGA----AA--C-TCCAAATCTAACGCCCTGGGCGGCATTTG--ATTTGTGC---G--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACGTAA-------------------------ATGCCAACAAC------------AACAGCTG------------------CC-----GGCAGACGAGTTGC----------A-AT--TAC------------CCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGA
droAna3 scaffold_12916:4179913-4180297 - GGCAAAAA-ATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCTTCAAGG-G------------------------AACATCTTATTCCGCCGCC-GGAACTCCA-ATAA-----------CTCGTA-----------------------------------------------CCGC---AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG-----GAGGGT--T-AAGG--TGTCGGTAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGC------------------AACAAC------------AACAACTG------------------TCTAACCG-A-------TTGC------ATC-----------------CGAATCAC------GGAAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droBip1 scf7180000396737:599934-600318 + GGCAAAAA-ATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCAGCAAGG-T------------------------AACATCTTTTTCCGCCGCC-GAAACTCCA-ATTACCCGTA----------------------------------------------------------CCGC---AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG------GGGGG--TGAAGG--TGTTGGCAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGC------------------AACAAC------------AACAACTG------------------GCTAACCG-A-------TTGC------ATC-----------------CGAATCAT------GGGAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droKik1 scf7180000302677:523994-524385 + GCAAAAAA-GCACCGCAAACGACCCGC-------AACGCCATGAACTCGGCAACAAAGGTAGGTTC-CG--------GTCTCCCAACCGGTCCGCCGGCGACGGC------------------------AACA----------------CTTATTCCC-GCCACCCTGG----------------------------------------CAGCCGGAG--CTCGGT-CCGCG--GGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTTCGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCAACGTC--GTCGGGG--TGGCGGGCG---------GTGAGCG-GG--------------------GATGCGTTTGTTTTGAATTTGCAC-GCGCGCCGAG-------AGC------AACAACAATGCCAATAACAATAACAATAACAA--ACCA------------------ATT--CCA-C-------ATCC----------G-AA----------------TCCCT-----GTGCA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTTGGCGA
droFic1 scf7180000454100:23850-24218 + ACAAAAAA-GCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGG-AC--------CTGCTCCGACTGCTCCGCCGGCTACCAC-------------------------------------GCCCCC-CGGACTACC-GCCCGCACCGTCTT-GGCGCGCCGCA--A---------------------------------------C---AACAAA-AAACG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTTTGCGGGGGG--CGACGGGTT---------GTGGGCCGGG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------ACCCCA----TTACA-------------------------------TTTGCAGGTGGGGGAGATATTCACGGCCGCCGGGCAGGCGTTCAGCCGATTGGGCGA
droEle1 scf7180000490644:211256-211673 - ACAAAAAA-GCAGAGC------CGCGCAAA-TAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGCCAG--------CTGCTCCGGCCGGTCCGCCGTCGACCAC-------------------------------------GCCCCC-CGGCATACC-GCCGCCTGCGCCCC-TGGGCGCTGCAGCAG--------------------------CCA---------C---AA-CAA-AAAAA-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCGTTCGCTCGTTCGCTCGTTTGTTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--CGGCGGACG---------GTGGGCG-GGTGG-------------TGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC------AAACAC----------------------------AA--ACTGAACCGAACCGAACTCCCGTCT--CCG-G-------ATGC----------A-AA----------------TCCGG-----TTGCA-------------------------------CTTGCAGGTGGGCGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droRho1 scf7180000779240:27547-27909 - ACAAAAAA-GCAGAGC------CTCGCAAA-AAAAAGGCCATGAATTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCAGCCCAGTCCGCCGGCGCCCAC-------------------------------------GCCCCC-CAGAATCCC-GCCGCCTGCGTCCC-CGAGCGCCGCA--A---------------------------------------C---A--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--TGGCGGGCG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGG-----GTGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCGGGACAGGCGTTTAGCAGACTGGGCGA
droBia1 scf7180000302422:1807306-1807671 - ACAAA-AA-GCAGCGC------CCCCCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGTCACGTCCGCCGGCGACCAC-------------------------------------GCCCCC-G-AAATCCC-GCCTCCAGCGCCCC-CGCGCGTCATA--A---------------------------------------C---A--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGG--GAGCGGTCG---------GTGGGCG-GG----------------GGTCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------GCT--CCG-G-------ATGC----------A-AA----------------TCCGGGTCGGATGCA-------------------------------CTTGCAGGTGGGGGAGATCTTTACGGCCGCCGGACAGGCGTTTAGCAGACTGGGCGA
droTak1 scf7180000415128:35184-35565 - ACAAA-AA-GTAGCGC------CCCGCGAATAAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGCCACCTCCGCCGGCGACCAC-------------------------------------GCCCCCCGGGAATACC-GCCTACTTCGCCCCGCGCGCCTTGCA--A---------------------------------------C-------AA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGTGGCGGTGGTCG---------GTGGGCG-TGCGGG--GCGGGGGGA-GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCGGG-------ATGC----------A-AA----------------TCCGCATC---TGCAT------------------------------CTTGTAGGTAGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEug1 scf7180000407253:709215-709575 + ACTAAAAA-GCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AA--------GTGCTCAGCCACATCCGCCGGCGACCAC-------------------------------------TCCCAC-TAAAATCGT-ACAACCAGAGGCCC-CA--CGTCGGA--GT--------------------------------------C------CGA-AAAAG-GCGGCGCGGGAGAGAGTCAA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCATGTTC--TCTGTGT--TGACGTACG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGG-----ATGCT-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCATTCAGCAGACTTGGCGA
dm3 chr2L:11278082-11278443 + ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCACCACATCCGCCGGCAGCTCC-------------------------------------GACCGC-GTTGATCCC-GTCGCCAGCGCCTC-CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGC--CGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droSim2 2l:10932318-10932679 + dsi_24029 ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCGCCACATCCGCCGGCTGCTCC-------------------------------------GCCCGC-GTTGATCCC-GTCGCCAGCGCCTC-CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droSec2 scaffold_3:6674899-6675260 + ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCTGCCACATCCGCCGGCTGCTCC-------------------------------------GCCCGC-GTTGATCCC-GTCGCCAGCGCCTC-CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGCG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droYak3 2L:7674632-7674993 + dya_257 ACAAAAAA-ACAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-TG--------CCGCTCCGCCACATCCGCCGGCTGCGCC-------------------------------------GCCCGC-GGAAATCCC-GTCGCCAGCGCCCC-CGCGCGTTCTA--AG--------------------------------------C------GAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGGG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----GTACA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEre2 scaffold_4929:14166704-14167065 - ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-GG--------CCGCTCCGCCACAGCCGCCGGCAGCGCC-------------------------------------GCCCGC-GACAATCCC-GTCGCCAGCGCCCC-CTCCCATTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGTG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATTTTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACAAAAAA-ATAGTTTAATTTATTT-------GATACGCCATGAACTCGGCTACCAAGGTACGTGC-AG--------AGCTTCTTAGTAGT--------------------------ATTTTC--ATCA-------------ATTGAC-TAAAATATT--------------------------------------TTAACGCTTTT-GCGGTATTCA--CTTTGTGCGG-G--AAA-ATAAA-GTGGCGCGAGCGGGAGTCGA-------GC----------------------------------CTCTCGCTCCTTCGAGTAAGAGCAACAG--CAATTTGTTGTTCCACGATG--ATAGAGG----------A---------GTGGGCG-GGTGGGTGGTTAAGGGAGAGAGGGCGCGTTTGTTTTGAATTTGCAAAACAGGCGG-CAGAAAA---------CAA---------------C------------AACT-CTG------------------CA-----GGGAG-----ATAAAAACGTATCCTTAT--TAC----TTA----TGTT-------TGTT---------------------------CTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCG-GGTGGGTGGTT................................................................................................................................................................................................................................................................................18314.3343038725
......................................................................................................................................................................................................................................................................................................................................................................................................GCG-GGTGGGTGGTTAAGGGAGAG.......................................................................................................................................................................................................................................................................2311.00100010
.....................ATTT-------GATACGCCATGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCG-GGTGGGTGGTA................................................................................................................................................................................................................................................................................1870.29200101
droVir3
TTAAAAAAAG--TTAT------TCTGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATGTTT-AATTC-----------AGTCGCAGCTA--------------ATTGGTTGCGTCTCA--AGCG-------------GCTTTC-TAAATCACA--------------------------A--A--------------------GCGGCATTTT--ATTTGTTC---G--GAA-AATTG-TCGGCTGTG---CGCCTC-------------TG--TCAG--------------------TTC-GTCTCACTCCTTCGGCAACGAATGTTAGCGAAATTTGTTTG--CT---T--------------------T---------ATGGGGC-GA-----------------GAAGGCGCGTTTGTTTTGAATTTGCAACGCATGCAA----------GCACGAACAA---------------C------------A---GCTG------------------CC---ACA-A-------ATGC------ATCTA-AAATTT-TG---------TCCAA-----TTGTC-------------------------------TGCGCAGGTTGGGGAGATTTTCACGGCAGCGGGTCAAGCATTCAGCAGGCTCGGCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGGTCAAGCATTCA.............1911.001000000000000000000000000000000000000100000000000000000000000000
.............................A--AGTGGGCCATGAATTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................AATCACA--------------------------A--A--------------------GCGGCATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000010000000000000000000
............................................................................................TA--------------ATTGGTTGCGTCTCA--AGCG-------------GCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAGATTTTCACGGC..............................1811.001000001000000000000000000000000000000000000000000000000000000000
droMoj3
AAAAAAAA-GTGATTC--------TGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATATTT-AAAGCACACGCAGTTTTTAAAAATTAGTTTAAGTGCATTTT----------------------------------TTCAAC-TGAAATGTC-----TCTTTTCCTA-CGTGCGTTGCA--A-----AATT------------------------------------------TTTG-GCGGCTGA-------------------GCGTCC--CTTG---------------CTCAGTTC-ATCTCACTCCTTCGAAAGCGAATGCCAGCGAAATGTTTTGCTTCATG-------------------------------------------------------------GGGCGCGTTTGTTTTGAATTTGCAACGCATGCTAAG---GCTAAACATAAACAA----------------------------AA--ACTC----GATTTGAATGC--------ACG-T-------ATAT----------A-AA----------------TATTT-----GTTGT-----------------------------TTTGCATAGGTTGGAGAAATTTTCACGGCAGCGGGCCAAGCGTTTAGCAGACTCGGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................CAAC-TGAAATGTC-----TCTTTTCCTA-CGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
droGri2
AAAAAAAA-GTAATTC--------AGCTTA--AGTAGGCCATGAATTCGGCAACAAAGGTATGTTA-AAAGC-----------AA-------------AACGCATTTAACCGATTGCAACCCGTAC--------------GCGCCGCC-GGATG-GCAAAGA----ATG----------------------------------------CCCCAATTGAGTTTTGTGC---G--GGAAAAGTGTGCGGCTGT---GTGCGTCT--------CTGTCA--T-----------------------ATC-GCCTCACTCCTTCGGGTGCGAATGGTAGCGAAATTTTGTGTTTGTGCTTC--ATTTTG------GGGGCG---------GTGAG-----------------------AGGGCGCGTTTGTTTTGAATTTGCACCGCATGCCAAA---------------CAA------CAGCAACAAC------------AACAACTC------------------AA-----AACAAAACAGCTGA----------A-AA--TA-TAACACACAAATTAT-------TATT-------------------------------CTTGCAGGTTGGTGAAATATTTACGGCAGCGGGTCAAGCGTTCAGCCGACTCGGTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GCAAAAAA-TTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGT-----------A---------------------------------------------------------------------GTCAT-GTCGTCTGCCCCCA-CGTGA----AA--C-TCCAAATCTAACGCCCTGGGCGGCATTTG--ATTTGTGC---G--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACGTAA-------------------------ATGCCAACAAC------------AACAGCTG------------------CC-----GGCAGACGAGTTGC----------A-AT--TAC------------CCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................CAACAAAGGTAGGTGC-AACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCACGGCCGCCGGA.......................1911.0010100000000
droPer2
GCAAAAAA-TTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGC-----------AGT---------------------------------------------------------------------CAT-GTCGTCTGCCCCCA-CGTGA----AA--C-TCCAAATCTAACGCCCTGGGCGGCATTTG--ATTTGTGC---G--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACGTAA-------------------------ATGCCAACAAC------------AACAGCTG------------------CC-----GGCAGACGAGTTGC----------A-AT--TAC------------CCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GGCAAAAA-ATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCTTCAAGG-G------------------------AACATCTTATTCCGCCGCC-GGAACTCCA-ATAA-----------CTCGTA-----------------------------------------------CCGC---AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG-----GAGGGT--T-AAGG--TGTCGGTAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGC------------------AACAAC------------AACAACTG------------------TCTAACCG-A-------TTGC------ATC-----------------CGAATCAC------GGAAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AACAACTG------------------TCTAACCG-A-------TT.......................................................................................................................................2012.002000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGCCGCCGGACAGGCGT................2311.001010000
droBip1
GGCAAAAA-ATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCAGCAAGG-T------------------------AACATCTTTTTCCGCCGCC-GAAACTCCA-ATTACCCGTA----------------------------------------------------------CCGC---AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG------GGGGG--TGAAGG--TGTTGGCAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGC------------------AACAAC------------AACAACTG------------------GCTAACCG-A-------TTGC------ATC-----------------CGAATCAT------GGGAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droKik1
GCAAAAAA-GCACCGCAAACGACCCGC-------AACGCCATGAACTCGGCAACAAAGGTAGGTTC-CG--------GTCTCCCAACCGGTCCGCCGGCGACGGC------------------------AACA----------------CTTATTCCC-GCCACCCTGG----------------------------------------CAGCCGGAG--CTCGGT-CCGCG--GGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTTCGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCAACGTC--GTCGGGG--TGGCGGGCG---------GTGAGCG-GG--------------------GATGCGTTTGTTTTGAATTTGCAC-GCGCGCCGAG-------AGC------AACAACAATGCCAATAACAATAACAATAACAA--ACCA------------------ATT--CCA-C-------ATCC----------G-AA----------------TCCCT-----GTGCA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTTGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
ACAAAAAA-GCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGG-AC--------CTGCTCCGACTGCTCCGCCGGCTACCAC-------------------------------------GCCCCC-CGGACTACC-GCCCGCACCGTCTT-GGCGCGCCGCA--A---------------------------------------C---AACAAA-AAACG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTTTGCGGGGGG--CGACGGGTT---------GTGGGCCGGG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------ACCCCA----TTACA-------------------------------TTTGCAGGTGGGGGAGATATTCACGGCCGCCGGGCAGGCGTTCAGCCGATTGGGCGASizeHit CountTotal NormTotal
No Reads
droEle1
ACAAAAAA-GCAGAGC------CGCGCAAA-TAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGCCAG--------CTGCTCCGGCCGGTCCGCCGTCGACCAC-------------------------------------GCCCCC-CGGCATACC-GCCGCCTGCGCCCC-TGGGCGCTGCAGCAG--------------------------CCA---------C---AA-CAA-AAAAA-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCGTTCGCTCGTTCGCTCGTTTGTTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--CGGCGGACG---------GTGGGCG-GGTGG-------------TGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC------AAACAC----------------------------AA--ACTGAACCGAACCGAACTCCCGTCT--CCG-G-------ATGC----------A-AA----------------TCCGG-----TTGCA-------------------------------CTTGCAGGTGGGCGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droRho1
ACAAAAAA-GCAGAGC------CTCGCAAA-AAAAAGGCCATGAATTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCAGCCCAGTCCGCCGGCGCCCAC-------------------------------------GCCCCC-CAGAATCCC-GCCGCCTGCGTCCC-CGAGCGCCGCA--A---------------------------------------C---A--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--TGGCGGGCG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGG-----GTGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCGGGACAGGCGTTTAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droBia1
ACAAA-AA-GCAGCGC------CCCCCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGTCACGTCCGCCGGCGACCAC-------------------------------------GCCCCC-G-AAATCCC-GCCTCCAGCGCCCC-CGCGCGTCATA--A---------------------------------------C---A--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGG--GAGCGGTCG---------GTGGGCG-GG----------------GGTCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------GCT--CCG-G-------ATGC----------A-AA----------------TCCGGGTCGGATGCA-------------------------------CTTGCAGGTGGGGGAGATCTTTACGGCCGCCGGACAGGCGTTTAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droTak1
ACAAA-AA-GTAGCGC------CCCGCGAATAAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGCCACCTCCGCCGGCGACCAC-------------------------------------GCCCCCCGGGAATACC-GCCTACTTCGCCCCGCGCGCCTTGCA--A---------------------------------------C-------AA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGTGGCGGTGGTCG---------GTGGGCG-TGCGGG--GCGGGGGGA-GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCGGG-------ATGC----------A-AA----------------TCCGCATC---TGCAT------------------------------CTTGTAGGTAGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droEug1
ACTAAAAA-GCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AA--------GTGCTCAGCCACATCCGCCGGCGACCAC-------------------------------------TCCCAC-TAAAATCGT-ACAACCAGAGGCCC-CA--CGTCGGA--GT--------------------------------------C------CGA-AAAAG-GCGGCGCGGGAGAGAGTCAA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCATGTTC--TCTGTGT--TGACGTACG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGG-----ATGCT-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCATTCAGCAGACTTGGCGASizeHit CountTotal NormTotal
No Reads
dm3
ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCACCACATCCGCCGGCAGCTCC-------------------------------------GACCGC-GTTGATCCC-GTCGCCAGCGCCTC-CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGC--CGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................GCGGGCG---------GTGGGCA-GG-----------------GGC.....................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000
........................................ATGAACTCGGCAATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000100000000000000000
......................................CCATGAACTCGGCAATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAAAGGCCATGAACTCGGCAATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCG---------GTGGGCA-GG-----------------GGCGGTGCG...............................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000
.............CGC------CCCGCGAA--AAAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AG-GCGGCGCGGGAGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GTGGGC--CGGCGGGCG---------GTGGGCA-G..........................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATTTGCAC-GCGG-----T..................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GTAGGTTC-AG--------CCGCTCCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTCGGCAATCAAGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................GTTGTTCCACCGTG--AGTGGGC--CG...................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ACTCGGCAATCAAGGTAGGTTC-AG--------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................GCGGCGCGGGAGAGAGTCGA-------......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCCGCCGGACAGGCGTTCAGC...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--AC..............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GTGGGC--CGGCGGGCG---------GTGGGCA-GG-----------------........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGGGCG---------GTGGGA.............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCAGCGCCTC-CGCGCGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AAAGGCCATGAACTCGGCAATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGACAGGCGTTCAGCAGACT......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................A--TTCG--------------------TTT-GTCTCACTCCTG......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................A--TTCG--------------------TTT-GTCTCACTCCTGCGAG..................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGGGCG---------GTGGGCA-GG-----------------GGCG....................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------CTTGCAGGTGGGGGAGA........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGGGCG---------GTGGGC.............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................TGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCACGGCCGCCGGA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACAGGCGTTCAGCAGACT......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCAGCGCCTC-CGCGCGTTGCA--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGACAGGCGTTCAGCAGA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AATCAAGGTAGGTTC-AG--------CCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGCG---------GTGGGCA-GG-----------------GGCGGTGCA...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................CGCGAA--AAAAGGCCATGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CATGAACTCGGCAATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGCCGCCGGACAGGCGTTC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GCA-GG-----------------GGCGGTGCGTTTGTT.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTTCAGCAGACTGGG...1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGGGCG---------GTGGGCA-...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAGGCCATGAACTCGGCAATCAAGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCACGGCCGCCGGACA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGCG---------GTGGGCA-GG-----------------GGCGGTG.................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................GTAGGTTC-AG--------CCGCTCCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ATGAACTCGGCAATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCACGGCCGCCGGACAGG...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GCAATCAAGGTAGGTTC-AG--------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTTCAGCAGACTGGGC..2011.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGAGATATTCACGGCCGCC..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGACAGGCGTTCAGCAGACTGGG...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCG---------GTGGGCA-GG-----------------GGCGGTG.................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................CGAA--AAAAGGCCATGAACTCGGCAATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACAGCGC------CCCGCGAA--AAAAGGCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGCCGCCGGACAGGCGTTCAGCAGA........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GCTCCACCACATCCGCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCGCCACATCCGCCGGCTGCTCC-------------------------------------GCCCGC-GTTGATCCC-GTCGCCAGCGCCTC-CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................CGGGCG---------GTGGGCA-GG-----------------GGCGGACT................................................................................................................................................................................................................................................................2312.00200000020000000000
..................................................................................................................................................................................................................................................................................................................................................................................GCGGGCG---------GTGGGCA-GG-----------------GGCGGAAA................................................................................................................................................................................................................................................................2412.00200000001000010000
........................................................................................................................................................................................................................................................................................................................................................................GTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGC.....................................................................................................................................................................................................................................................................2711.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................GTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCG....................................................................................................................................................................................................................................................................2811.00100000000000001000
.............................................CTCGGCAATCAAGGTAGGTTT-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGACAGGCGTTCAGCAGACTG.....2411.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................TGGGT--TGGCGGGCG---------GTGGGC.............................................................................................................................................................................................................................................................................................2011.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGCG---------GTGGGCA-GG-----------------GGCGGTGCG...............................................................................................................................................................................................................................................................2211.00100000000000010000
droSec2
ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCTGCCACATCCGCCGGCTGCTCC-------------------------------------GCCCGC-GTTGATCCC-GTCGCCAGCGCCTC-CGCGCGTTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGCG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................CCCGCGAA--AAAAGGCCATGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
droYak3
ACAAAAAA-ACAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-TG--------CCGCTCCGCCACATCCGCCGGCTGCGCC-------------------------------------GCCCGC-GGAAATCCC-GTCGCCAGCGCCCC-CGCGCGTTCTA--AG--------------------------------------C------GAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGGG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----GTACA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................TCGCCAGCGCCCC-CGCGCGTTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
........................................ATGAACTCGGCAATCAAGGTAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----------A-AA----------------TCCGC-----GTACG-------------------------------TG.......................................................18200.15303000000000
droEre2
ACAAAAAA-ACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-GG--------CCGCTCCGCCACAGCCGCCGGCAGCGCC-------------------------------------GCCCGC-GACAATCCC-GTCGCCAGCGCCCC-CTCCCATTGCA--AG--------------------------------------C---G--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGTG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------------AA--ACTG------------------ACT--CCG-G-------ATGC----------A-AA----------------TCCGC-----ATGCA-------------------------------CTTGCAGGTGGGGGAGATTTTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGATTTTCACGGCCGCCG.........................2312.0022000000

Generated: 05/18/2015 at 01:05 AM