ID:

dwi_124

 Coordinate:

scf2_1100000004540:1082223-1082300 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.97 -25.1 -25.1

Flybase annnotation

utr5 [utr5_plus_8998]

No Repeatable elements found

Sense Strand Reads

TTTTTTATTTTTTGATTTAATTAATCAATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTATTATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACGAAATGAATTTATGTGAAAATATTTGAC

***********************************.(((...(((((((.(((((((((..(((.((((.((...............................)).)))).)))..))))))))))))))))...)))...************************************* 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V119

head

 M045

female body

 V117

male body		 V118

embryo
..................................................TTGGGATTTTTTAGATCAGC............................................................................................................ 20 0 1 18331.00 18331 14710 3610 0 7 4
................................................GGTTGGGATTTTTTAGATCAGC............................................................................................................ 22 0 1 5563.00 5563 3131 2429 0 1 2
..................................................TTGGGATTTTTTAGATCAGCAG.......................................................................................................... 22 0 1 2263.00 2263 551 1692 11 8 1
..................................................TTGGGATTTTTTAGATCAGCA........................................................................................................... 21 0 1 819.00 819 545 271 0 2 1
...................................................TGGGATTTTTTAGATCAGCAGT......................................................................................................... 22 0 1 707.00 707 0 696 2 8 1
..................................................TTGGGATTTTTTAGATCAGCAGT......................................................................................................... 23 0 1 433.00 433 180 250 0 2 1
........................................................................................................TACTGGCCTACTAAGTCCCAAC.................................................... 22 0 1 310.00 310 88 212 10 0 0
........................................................................................................TACTGGCCTACTAAGTCCCA...................................................... 20 0 1 288.00 288 16 265 7 0 0
................................................GGTTGGGATTTTTTAGATCAGCA........................................................................................................... 23 0 1 283.00 283 59 223 1 0 0
...................................................TGGGATTTTTTAGATCAGCAG.......................................................................................................... 21 0 1 252.00 252 2 247 1 1 1
................................................GGTTGGGATTTTTTAGATCAGCAG.......................................................................................................... 24 0 1 193.00 193 8 182 3 0 0
..................................................TTGGGATTTTTTAGATCAGCT........................................................................................................... 21 1 1 153.00 153 144 9 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAA..................................................... 21 0 1 129.00 129 5 120 4 0 0
..................................................TTGGGATTTTTTAGATCAG............................................................................................................. 19 0 1 116.00 116 55 60 0 1 0
..................................................TTGGGATTTTTTAGATCAGCAGA......................................................................................................... 23 1 1 89.00 89 37 51 0 0 1
................................................GGTTGGGATTTTTTAGATCAG............................................................................................................. 21 0 1 87.00 87 13 74 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAT.......................................................................................................... 22 1 1 69.00 69 45 24 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAA.......................................................................................................... 22 1 1 67.00 67 29 37 0 1 0
........................................................................................................TACTGGCCTACTAAGTCCC....................................................... 19 0 1 61.00 61 46 15 0 0 0
...................................................TGGGATTTTTTAGATCAGC............................................................................................................ 19 0 1 49.00 49 5 44 0 0 0
................................................GGTTGGGATTTTTTAGATC............................................................................................................... 19 0 1 48.00 48 20 28 0 0 0
..................................................TTGGGATTTTTTGGATCAGC............................................................................................................ 20 1 1 48.00 48 45 3 0 0 0
................................................GGTTGGGATTTTTTAGATCA.............................................................................................................. 20 0 1 46.00 46 3 43 0 0 0
..................................................TTGGGATTTTTTAGATCA.............................................................................................................. 18 0 1 41.00 41 23 18 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAC.......................................................................................................... 22 1 1 40.00 40 30 10 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAACT................................................... 23 1 1 34.00 34 16 17 1 0 0
..................................................TTGGGATTTTTTAGATCAAC............................................................................................................ 20 1 1 32.00 32 18 14 0 0 0
..................................................TTGGGATTTTTTAGATCAGCC........................................................................................................... 21 1 1 32.00 32 24 8 0 0 0
..................................................TTGGGATTTTTTAGATCAGA............................................................................................................ 20 1 1 22.00 22 7 15 0 0 0
..................................................TTGGGATTTTTTAGATCAGT............................................................................................................ 20 1 1 22.00 22 10 12 0 0 0
.................................................GTTGGGATTTTTTAGATCAGC............................................................................................................ 21 0 1 20.00 20 14 6 0 0 0
................................................GTTTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 20.00 20 18 2 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCAA.......................................................................................................... 24 1 1 19.00 19 1 18 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACA................................................... 22 0 1 19.00 19 1 15 3 0 0
..................................................TTTGGATTTTTTAGATCAGC............................................................................................................ 20 1 1 18.00 18 15 3 0 0 0
..................................................CTGGGATTTTTTAGATCAGC............................................................................................................ 20 1 1 18.00 18 5 13 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGA......................................................................................................... 22 1 1 18.00 18 0 17 0 0 1
..................................................TTGGGATTTTTTAGATCAGCAGG......................................................................................................... 23 1 1 18.00 18 12 6 0 0 0
..................................................TTGGGGTTTTTTAGATCAGC............................................................................................................ 20 1 1 18.00 18 13 5 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGC......................................................................................................... 23 1 1 18.00 18 17 1 0 0 0
..................................................TTGGGATTTTTTAGGTCAGC............................................................................................................ 20 1 1 16.00 16 11 5 0 0 0
..................................................TGGGATTTTTTTAGATCAGCAGT......................................................................................................... 23 3 1 16.00 16 0 15 0 1 0
................................................GGTTGGGATTTTTTAGATAAGC............................................................................................................ 22 1 1 15.00 15 1 14 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACAT.................................................. 23 0 1 15.00 15 2 8 5 0 0
...................................................TGGGATTTTTTAGATCAGCA........................................................................................................... 20 0 1 15.00 15 0 15 0 0 0
..................................................TTGGGATTTTTTAGATAAGC............................................................................................................ 20 1 1 13.00 13 3 10 0 0 0
..................................................TTGGGATTTTTTAGATCAGCACT......................................................................................................... 23 1 1 12.00 12 12 0 0 0 0
..................................................TTGGGATTTTTTCGATCAGC............................................................................................................ 20 1 1 12.00 12 9 3 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCAGT......................................................................................................... 25 0 1 12.00 12 0 12 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTT........................................................................................................ 24 0 1 12.00 12 12 0 0 0 0
..................................................TTGGGATTTTTTAGATCGGC............................................................................................................ 20 1 1 12.00 12 11 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAAT.................................................... 22 1 1 11.00 11 2 9 0 0 0
................................................GGTTGGGCTTTTTTAGATCAGC............................................................................................................ 22 1 1 11.00 11 1 10 0 0 0
................................................GGTTGGGATTTTTTAGATCATC............................................................................................................ 22 1 1 11.00 11 9 2 0 0 0
..................................................TTGGGATTTTTTAGATTAGC............................................................................................................ 20 1 1 11.00 11 3 8 0 0 0
..................................................TTGGGATTTTTTAGACCAGC............................................................................................................ 20 1 1 11.00 11 2 9 0 0 0
..................................................TTGGGATTTTTTAGCTCAGC............................................................................................................ 20 1 1 11.00 11 2 9 0 0 0
................................................GGTTGGGATTTTTTAGATCAGA............................................................................................................ 22 1 1 11.00 11 2 9 0 0 0
..................................................TTGGGATTTTTTAGATAAGCAG.......................................................................................................... 22 1 1 10.00 10 0 10 0 0 0
................................................GGTTGGGATTTTTTAGATCAAC............................................................................................................ 22 1 1 10.00 10 3 7 0 0 0
................................................GGTTGGGATTTTATAGATCAGC............................................................................................................ 22 1 1 10.00 10 10 0 0 0 0
..................................................TTGGGATTTTTTAGATCATC............................................................................................................ 20 1 1 10.00 10 5 5 0 0 0
................................................TGTTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 10.00 10 2 8 0 0 0
................................................GGGTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 9.00 9 2 7 0 0 0
................................................GGCTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 9.00 9 1 8 0 0 0
..................................................TTGGGCTTTTTTAGATCAGC............................................................................................................ 20 1 1 9.00 9 7 2 0 0 0
..................................................TTGTGATTTTTTAGATCAGC............................................................................................................ 20 1 1 9.00 9 6 3 0 0 0
..................................................TTGGGATTTTTTAGATCCGC............................................................................................................ 20 1 1 9.00 9 2 7 0 0 0
...................................................TTGGATTTTTTAGATCAGC............................................................................................................ 19 1 1 9.00 9 6 3 0 0 0
..................................................TTGGGACTTTTTAGATCAGC............................................................................................................ 20 1 1 9.00 9 4 5 0 0 0
..................................................TTAGGATTTTTTAGATCAGC............................................................................................................ 20 1 1 8.00 8 6 2 0 0 0
................................................GGTTGGGATTTTCTAGATCAGC............................................................................................................ 22 1 1 8.00 8 3 5 0 0 0
..................................................TTGGGATTTTTTAGATCAGCGG.......................................................................................................... 22 1 1 8.00 8 3 5 0 0 0
..................................................TTGGGATTTTTTAGATCAGG............................................................................................................ 20 1 2 8.00 16 16 0 0 0 0
.................................................CTTGGGATTTTTTAGATCAGC............................................................................................................ 21 1 1 8.00 8 5 3 0 0 0
..................................................TTGGGATTTTTTGGATCAGCAG.......................................................................................................... 22 1 1 8.00 8 5 3 0 0 0
..................................................TTGAGATTTTTTAGATCAGC............................................................................................................ 20 1 1 8.00 8 2 6 0 0 0
..................................................TTGGGATTTTTTAGATCAGCATT......................................................................................................... 23 1 1 8.00 8 5 3 0 0 0
..................................................TTGGGATTTTTTAGATCAGCATA......................................................................................................... 23 2 1 8.00 8 6 2 0 0 0
..................................................TTGGGATTTTTTAGATCAACAG.......................................................................................................... 22 1 1 8.00 8 0 8 0 0 0
................................................GGTTGGGATTTTTTAGATCAGT............................................................................................................ 22 1 1 8.00 8 3 5 0 0 0
..................................................TTGGTATTTTTTAGATCAGC............................................................................................................ 20 1 1 8.00 8 5 3 0 0 0
................................................GGTCGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 7.00 7 1 6 0 0 0
................................................CGTTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 7.00 7 1 6 0 0 0
..................................................ATGGGATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 7.00 7 0 7 0 0 0
..................................................TTGGGATTTTTTAGATCAGCCG.......................................................................................................... 22 1 1 7.00 7 1 6 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAAC.................................................... 21 0 1 7.00 7 2 2 3 0 0
...................................................TGGGCTTTTTTAGATCAGCAGT......................................................................................................... 22 1 1 7.00 7 0 7 0 0 0
..................................................TTGGGATTTTTTATATCAGC............................................................................................................ 20 1 1 7.00 7 1 6 0 0 0
..................................................TTGGGATTTTTTAGATCACC............................................................................................................ 20 1 1 7.00 7 1 6 0 0 0
................................................AGTTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 6.00 6 2 4 0 0 0
................................................GGTTGGGGTTTTTTAGATCAGC............................................................................................................ 22 1 1 6.00 6 3 3 0 0 0
................................................GGTTGGGATTCTTTAGATCAGC............................................................................................................ 22 1 1 6.00 6 0 6 0 0 0
..................................................TTGGGATTTTTTTGATCAGC............................................................................................................ 20 1 1 6.00 6 6 0 0 0 0
..................................................TTGGAATTTTTTAGATCAGC............................................................................................................ 20 1 1 6.00 6 4 2 0 0 0
................................................GGTTTGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 6.00 6 5 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCG........................................................................................................... 21 1 1 6.00 6 6 0 0 0 0
..................................................TTGGGATTTTTTAGATCT.............................................................................................................. 18 1 1 6.00 6 2 4 0 0 0
..................................................TCGGGATTTTTTAGATCAGC............................................................................................................ 20 1 1 6.00 6 4 2 0 0 0
..................................................ATGGGATTTTTTAGATCAGC............................................................................................................ 20 1 1 6.00 6 1 5 0 0 0
.................................................GGTTGGATTTTTTAGATCAGC............................................................................................................ 21 2 1 6.00 6 3 3 0 0 0
................................................GGTTCGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 6.00 6 5 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAACA................................................... 23 0 1 6.00 6 0 6 0 0 0
..................................................TTGGGATTTTTTAGATCAGAAG.......................................................................................................... 22 1 1 6.00 6 0 6 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAACC................................................... 23 1 1 6.00 6 3 2 1 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACT................................................... 22 1 1 6.00 6 2 4 0 0 0
................................................GGTTGGGATTTTTTAAATCAGC............................................................................................................ 22 1 1 6.00 6 0 6 0 0 0
..................................................TTGGGATTCTTTAGATCAGC............................................................................................................ 20 1 1 6.00 6 5 1 0 0 0
................................................GGTTGGGATTTTGTAGATCAGC............................................................................................................ 22 1 1 5.00 5 5 0 0 0 0
...........................................................................................................TGGCCTACTAAGTCCCAACATT................................................. 22 1 1 5.00 5 1 3 1 0 0
................................................GGTTGGGATTTTTTAGATCCGC............................................................................................................ 22 1 1 5.00 5 0 5 0 0 0
................................................GGTTGGGATTTTTTCGATCAGC............................................................................................................ 22 1 1 5.00 5 0 5 0 0 0
..................................................GTGGGATTTTTTAGATCAGC............................................................................................................ 20 1 1 5.00 5 0 5 0 0 0
..................................................TTGGGATTTTTTAGAACAGC............................................................................................................ 20 1 1 5.00 5 2 3 0 0 0
..................................................TTGGGATTTTTTACATCAGC............................................................................................................ 20 1 1 5.00 5 0 5 0 0 0
..................................................CTGGGATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 5.00 5 0 5 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCC....................................................... 18 0 1 5.00 5 5 0 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCT........................................................................................................... 23 1 1 5.00 5 2 3 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCC........................................................................................................... 23 1 1 5.00 5 2 3 0 0 0
................................................GGATGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 5.00 5 1 4 0 0 0
..................................................TTGGGAGTTTTTAGATCAGC............................................................................................................ 20 1 1 5.00 5 4 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGAT........................................................................................................ 24 1 1 5.00 5 3 2 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAAA.................................................... 22 1 1 5.00 5 0 5 0 0 0
..................................................TTGCGATTTTTTAGATCAGC............................................................................................................ 20 1 1 5.00 5 2 3 0 0 0
................................................GGTTGCGATTTTTTAGATCAGC............................................................................................................ 22 1 1 5.00 5 1 4 0 0 0
..................................................TTGGGATTTTTTAGATCATCAG.......................................................................................................... 22 1 1 4.00 4 0 4 0 0 0
..................................................TTGGGCTTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 4.00 4 0 4 0 0 0
..................................................TTGGGATTTCTTAGATCAGC............................................................................................................ 20 1 1 4.00 4 3 1 0 0 0
..................................................TTGGCATTTTTTAGATCAGC............................................................................................................ 20 1 1 4.00 4 2 2 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGG......................................................................................................... 22 1 1 4.00 4 0 4 0 0 0
..................................................TTGGGATTTTTTGGATCAGCAGT......................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
..................................................TTGGGATTTTTTAGATCCGCAG.......................................................................................................... 22 1 1 4.00 4 0 4 0 0 0
..................................................TTGGGATTTTTCAGATCAGC............................................................................................................ 20 1 1 4.00 4 1 3 0 0 0
..................................................TTTGGATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................TTCGGATTTTTTAGATCAGC............................................................................................................ 20 1 2 4.00 8 6 2 0 0 0
................................................GGTTAGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 4.00 4 0 4 0 0 0
..................................................TTGGGATTTTTTAGATGAGC............................................................................................................ 20 1 1 4.00 4 2 2 0 0 0
..................................................TGGGATTTTTTTAGATCAGCAG.......................................................................................................... 22 3 3 3.33 10 0 10 0 0 0
................................................GGTTGGGATTTTTTAGATCAGAA........................................................................................................... 23 1 1 3.00 3 0 3 0 0 0
..................................................TTGGGATGTTTTAGATCAGC............................................................................................................ 20 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTGGATCAGCA........................................................................................................... 21 1 1 3.00 3 1 2 0 0 0
................................................GGTTGGGATTTTTTAGATTAGC............................................................................................................ 22 1 1 3.00 3 0 3 0 0 0
..................................................TTGGGATTTTTTAGATCAGCACC......................................................................................................... 23 2 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTATAGATCAGCAG.......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
................................................GGTTGGGATTTTTTAGATAAGCA........................................................................................................... 23 1 1 3.00 3 0 3 0 0 0
..................................................TTGGGATTTTTTAGAGCAGC............................................................................................................ 20 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTTAAGATCAGC............................................................................................................ 20 1 1 3.00 3 0 3 0 0 0
................................................GGTTGTGATTTTTTAGATCAGC............................................................................................................ 22 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGTAG.......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
................................................GGTTGGGATTTTTTAGAACAGC............................................................................................................ 22 1 1 3.00 3 0 3 0 0 0
........................................................................................................TACTGGCCTACTAAGTCC........................................................ 18 0 1 3.00 3 2 1 0 0 0
..................................................TTGGGGTTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 3.00 3 1 2 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCG........................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCTC.......................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
................................................GGTTGGGATTTTTTAGATCT.............................................................................................................. 20 1 1 3.00 3 0 3 0 0 0
...................................................AGGGATTTTTTAGATCAGCAGT......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGTT........................................................................................................ 23 0 1 3.00 3 0 3 0 0 0
....................................................GGGATTTTTTAGATCAGC............................................................................................................ 18 0 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTTTAGACCAGCAG.......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
..................................................TTGGGATTTTTTAAATCAGC............................................................................................................ 20 1 1 3.00 3 0 3 0 0 0
................................................GGTTGGGACTTTTTAGATCAGC............................................................................................................ 22 1 1 3.00 3 1 2 0 0 0
................................................GGTTGGGATTTTTTAGACCAGC............................................................................................................ 22 1 1 3.00 3 1 2 0 0 0
...................................................TTGGATTTTTTAGATCAGCAGT......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
................................................GGTTGGGATTTTTTACATCAGC............................................................................................................ 22 1 1 3.00 3 0 3 0 0 0
...................................................TGGGATTTTTTGGATCAGCAGT......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
................................................GGTTGGGATTTTTTAGATCACC............................................................................................................ 22 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTTTTTAGATTAGCAG.......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
................................................GGCTGGGATTTTTTAGATCAGCA........................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
...................................................TGGGATTTTTCAGATCAGCAGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
........................................................................................................TACTGGTCTACTAAGTCCCA...................................................... 20 1 1 2.00 2 0 2 0 0 0
................................................GATTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 2.00 2 0 2 0 0 0
....................................................GGGATTTTTTAGATCAGCAGT......................................................................................................... 21 0 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTAAATCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
...................................................TGGTATTTTTTAGATCAGCAGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
................................................GGTTGGGATTTTTCAGATCAGC............................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................TTCGGATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGATTCTTTAGATCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAT..................................................... 21 1 1 2.00 2 0 1 1 0 0
.................................................GTTGGGATTTTTTAGATCAGCA........................................................................................................... 22 0 1 2.00 2 0 2 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCA........................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTGGATCAGCT........................................................................................................... 21 2 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCCT.......................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGATCGGCAGT......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
........................................................................................................CACTGGCCTACTAAGTCCCA...................................................... 20 1 1 2.00 2 0 2 0 0 0
..................................................CTGGGATTTTTTAGATCAGCAGT......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
....................................................TGGATTTTTTAGATCAGCAGT......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCAC.......................................................................................................... 24 1 1 2.00 2 1 1 0 0 0
...................................................TGGGATTTTTTAGATCAGCGGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
................................................GGTTGGGATTTATTAGATCAGC............................................................................................................ 22 1 1 2.00 2 0 2 0 0 0
................................................GGTTGAGATTTTTTAGATCAGC............................................................................................................ 22 1 1 2.00 2 0 2 0 0 0
................................................GTTTGGGATTTTTTAGATC............................................................................................................... 19 1 1 2.00 2 2 0 0 0 0
........................................................................................................TACTGACCTACTAAGTCCCAAC.................................................... 22 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTCTAGATCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTTC....................................................................................................... 25 1 1 2.00 2 1 1 0 0 0
..................................................TTGGAATTTTTTAGATCAGCAGT......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCATC......................................................................................................... 23 2 1 2.00 2 2 0 0 0 0
...................................................TGGGATTTTTTAGATCAGCAA.......................................................................................................... 21 1 1 2.00 2 0 2 0 0 0
................................................GCTTGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGACCAG............................................................................................................. 19 1 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTA........................................................................................................ 24 1 1 2.00 2 2 0 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCAAA..................................................... 21 1 1 2.00 2 0 2 0 0 0
................................................GGTTGGGATTTTTTAGATCAA............................................................................................................. 21 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGATTTTTTAGATCATCAGA......................................................................................................... 23 2 1 2.00 2 2 0 0 0 0
................................................GGTTGGGATTTTTTAGATCAGTA........................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
..................................................TTTGGATTTTTTAGATCAGCAT.......................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTATTTAGATCAGC............................................................................................................ 20 1 1 2.00 2 1 1 0 0 0
..................................................TTGGCATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
................................................GGATGGGATTTTTTAGATCAGCAG.......................................................................................................... 24 1 1 2.00 2 0 2 0 0 0
.........................................................................TATTGCTACAAGTCAAAAATTTATTAT.............................................................................. 27 0 1 2.00 2 0 2 0 0 0
...................................................TGGGGTTTTTTAGATCAGCAGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACATT................................................. 24 1 1 2.00 2 0 2 0 0 0
..................................................TTGCGATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
........................................................................................................TACTGGCCTACTAAGTACCAA..................................................... 21 1 1 2.00 2 0 2 0 0 0
........................................................................................................TAATGGCCTACTAAGTCCCA...................................................... 20 1 1 2.00 2 0 2 0 0 0
................................................GGTTGGGATTTTTTAGTTCAGC............................................................................................................ 22 1 1 2.00 2 1 1 0 0 0
................................................GGTTGGGATTTCTTAGATCAGC............................................................................................................ 22 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTAGGTCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
................................................GGTTGGGATTTTTTAGATAAG............................................................................................................. 21 1 1 2.00 2 0 2 0 0 0
...................................................TTGGATTTTTTAGATCAGCA........................................................................................................... 20 1 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTCC....................................................................................................... 25 2 1 2.00 2 1 1 0 0 0
................................................GGTTGGGATTTTTTAGATCC.............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0
...................................................TGGGCTTTTTTAGATCAGCAG.......................................................................................................... 21 1 1 2.00 2 0 2 0 0 0
.................................................CTTGGGATTTTTTAGATCAGCAG.......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
..................................................TTGGAATTTTTTAGATCAGCA........................................................................................................... 21 1 1 2.00 2 0 2 0 0 0
................................................GGTTGGGATTTTTTAGATCAGG............................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
........................................................................................................TACTGGCCTACTAATTCCCAAC.................................................... 22 1 1 2.00 2 1 1 0 0 0
................................................GGTTGGGAATTTTTAGATCAGC............................................................................................................ 22 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTCAGATCAG............................................................................................................. 19 1 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCACCT........................................................................................................ 24 2 1 2.00 2 2 0 0 0 0
................................................GGTTGGGATTTTTTAAATCAGCA........................................................................................................... 23 1 1 2.00 2 0 2 0 0 0
...................................................TGGGATTTTTTAGATCAGAAGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
..................................................GTGGGATTTTTTAGATCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
....................................................GGGATTTTTTAGATCAGCAG.......................................................................................................... 20 0 1 2.00 2 0 2 0 0 0
................................................TGTTGGGATTTTTTAGATC............................................................................................................... 19 1 1 2.00 2 2 0 0 0 0
...................................................TGGGATTTTTTCGATCAGCAGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
.........................................................................TATTGCTACAAGTCAAAAATTTATT................................................................................ 25 0 1 2.00 2 0 2 0 0 0
................................................GGTAGGGATTTTTTAGATCAGC............................................................................................................ 22 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGATTTTTTACATCAGCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
.....................................................TGATTTTTTAGATCAGCAG.......................................................................................................... 19 1 1 2.00 2 0 2 0 0 0
...............................................CGGTTGGGATTTTTTAGATCAGC............................................................................................................ 23 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGAA........................................................................................................... 21 1 1 2.00 2 0 2 0 0 0
...................................................TGGGATTTTTTAGATCAGCCGT......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
......................................................GATTTTTTAGATCAGCAG.......................................................................................................... 18 0 1 2.00 2 1 1 0 0 0
...................................................TGGGATTTTTTAGATCAG............................................................................................................. 18 0 1 2.00 2 0 2 0 0 0
..................................................TTGGGATTTTTTAGATCACCAG.......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
...................................................TTGGGATTTTTAGATCAGCAG.......................................................................................................... 21 3 3 1.33 4 0 4 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAAT......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCCTACTAACTCCCA...................................................... 20 1 1 1.00 1 0 1 0 0 0
..................................................CTGGGATTTTTTAGATCAGCA........................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
...................................................CGGGATTTTTTAGATCAGCAGA......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTCAGATCAG............................................................................................................. 21 1 1 1.00 1 0 1 0 0 0
...................................................TGGGATTTTTTAGATCAGAAG.......................................................................................................... 21 1 1 1.00 1 0 0 0 0 1
................................................GGTTGGGATTTTTTAGATAAGCAG.......................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTCTAGATCAGCAGT......................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
................................................TGTTGGGATTTTTTAGATCAGCA........................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAGATCACA............................................................................................................ 22 2 1 1.00 1 0 1 0 0 0
........................................................................................................TACTCGCCTACTAAGTCCCAA..................................................... 21 1 1 1.00 1 0 1 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACTT.................................................. 23 1 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTCTAGATCAGCAGT......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
...................................................TGGGATTTTTTAGATCAGCATT......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAGACCAGCAG.......................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAGATCAC............................................................................................................. 21 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAAATCAG............................................................................................................. 21 1 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTATAGATCAGC............................................................................................................ 20 1 1 1.00 1 1 0 0 0 0
...................................................TTGGGATTTTTAGATCAGCAGT......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCTTACTAAGTCCCAAC.................................................... 22 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTCTTTAGATCAGCA........................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAGAACAGCA........................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
....................................................................................................CGTGGACTGGCCTACTAAGTCCCAACA................................................... 27 3 1 1.00 1 1 0 0 0 0
..................................................CTGGGATTTTTTAGATCAG............................................................................................................. 19 1 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCCC.......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCA...................................................... 19 0 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTTTAGATGAGCAG.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCCTACTAGGTCCCAAC.................................................... 22 1 1 1.00 1 0 1 0 0 0
...................................................TGGGATTCCTTAGATCAGCAGT......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
...................................................TGGCATTTTATAGATCAGCAGT......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGTCC....................................................................................................... 24 2 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTTTAGAGCAGCAGT......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
................................................GTTTGGGATTTTTTAGATCTGC............................................................................................................ 22 2 1 1.00 1 0 1 0 0 0
..................................................TTGGGGTTTTTTAGATCAGCAGT......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCACC.................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................TTGGGCTTTTTTAGATCAGCA........................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
................................................GGTTGGGCTTTTTTAGATC............................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAGGTCAG............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..................................................TTGGGATTTATTAGATCAGC............................................................................................................ 20 1 1 1.00 1 1 0 0 0 0
..................................................ATGGGATTTTTTAGATCAGCA........................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCATACTAAGTCCCA...................................................... 20 1 1 1.00 1 0 1 0 0 0
........................................................................................................AACTGGCCTACTAAGTCCCA...................................................... 20 1 1 1.00 1 0 1 0 0 0
...................................................TGGGATTTTTTAGATCCGCAG.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTCT....................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
................................................GGTTGGGATTTTTTAGATCCGCAG.......................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
................................................GGTTGGGATTTTTTAGATCAGCACT......................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
.................................................GTTGGGATTTTTTAGATCAGCAG.......................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
................................................TCTTGGGATTTTTTAGATCAGC............................................................................................................ 22 2 1 1.00 1 0 1 0 0 0
..................................................TTGGGATTTTTTAGATCATCA........................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................TTGGGATTTTTTATATCAGCAG.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................ATGGGATTTTTTAGATCAGCAGT......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTACCA...................................................... 20 1 1 1.00 1 0 1 0 0 0
.....................................................GGATTTTTTAGATAAGCAG.......................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAAG.................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................................................................TACTGACCTACTAAGTCCCA...................................................... 20 1 1 1.00 1 0 1 0 0 0

Anti-sense strand reads

AAAAAATAAAAAACTAAATTAATTAGTTAGACACACACGCGGGTAATACCAACCCTAAAAAATCTAGTCGTCAATAACGATGTTCAGTTTTTAAATAATAGTAGATGACCGGATGATTCAGGGTTGTATTACTCTCATTTTTGGTGACTGCTTTACTTAAATACACTTTTATAAACTG

*************************************.(((...(((((((.(((((((((..(((.((((.((...............................)).)))).)))..))))))))))))))))...)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 M020

head

 V117

male body		 V118

embryo

 V119

head
......................................................................................................AGATGACCGGATGATTCAGGGT...................................................... 22 0 1 15.00 15 10 0 2 2 1
.......................................................................................................GATGACCGGATGATTCAGGGT...................................................... 21 0 1 4.00 4 4 0 0 0 0
................................................CCAACCCTAAAAAATCTAGTC............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................ATAGTAGATGACCGGATGATTCAG......................................................... 24 0 1 1.00 1 0 0 0 1 0
.......................................................................CAATAACGATGTTCAGTTTTTA..................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.....................................................................................................TTGATGACCGGATGATTCAGGGT...................................................... 23 1 1 1.00 1 0 0 1 0 0
.........................................................................ATAACGATGTTCAGTTTTTA..................................................................................... 20 0 1 1.00 1 0 1 0 0 0
......................................................................TCAATAACGATGTTCAGTTTTTA..................................................................................... 23 0 1 1.00 1 0 1 0 0 0
.......................................................................................................GATGACCGGATGATTCAGGGTT..................................................... 22 0 1 1.00 1 1 0 0 0 0
.........................................................................ATAACGATGTTCAGTTTTTAA.................................................................................... 21 0 1 1.00 1 0 0 0 0 1
.........................GTTAGGCACGCGCGCGGGT...................................................................................................................................... 19 3 4 0.25 1 0 1 0 0 0
............................................................................................AAATAAGAGTAGAAGGCCGG.................................................................. 20 3 15 0.07 1 1 0 0 0 0
............................................................................................AAAAGATAGTAGTTGACCGGA................................................................. 21 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004540:1082173-1082350 - dwi_124 confident TTTTTTATTTTTTGATTTAATTA-------------------AT--CAATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAA-GTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGA------CG---AA-------AT-GAATTTA-TGTGAAAATATTTGA------------------------------------------------C
droVir3 scaffold_13049:17910652-17910763 + dvi-mir-193 Known_mirbase ----------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATG-TA--TCGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACC----------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:23178993-23179129 + dmo_328 confident ----------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA-----TT-ATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTT--CAA--------------TT-AATTTAA-TTTTAAAAT-----A-------------------------------------------------
droGri2 scaffold_10030:24065-24176 - dgr_57 candidate-rescued ----------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTT-TA--TCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCC----------------------------------------------------------------------------------------------------
dp5 XR_group6:2746008-2746161 - dps-mir-193 Known_mirbase -----------------------------------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG-TA-TTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-------------AAGACTA-TGTTAAAATGAGTGA-------------------------------------------------
droPer2 scaffold_9:1042474-1042627 - dpe_20 confident -----------------------------------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG-TA-TTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-------------AAGACTA-TGTTAAAATGAGTGA-------------------------------------------------
droAna3 scaffold_13337:17070785-17070947 - dan_319 confident -----------------------------------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCA-TA-TTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAT---------------------TG---AAAATA-----AAATACAAATTTTGGTGAAAAGTGTATTGAA--------------------------T
droBip1 scf7180000396641:558584-558704 - -----------------------------------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCA-TA-TTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACT-------------------------------------------------------------------------------------------------
droKik1 scf7180000302694:466999-467154 + TTTGTCAGTTTTTGATTAACTTAAATATAAGCTG-------------GTTCTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCA-TA-TTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTG------------------------------------------------------------------------------------------------
droFic1 scf7180000453831:395576-395697 + -----------------------------------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCA-TA-TTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGC----------------------------------------------------------------------------------------------
droEle1 scf7180000491255:2722775-2722890 - -----------------------------------------------TA----CGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCAC--------------------------------------------------------------------------------------------------
droRho1 scf7180000780059:195346-195541 - T--GCCAGTTATTTTTGAGATTTAAAAGAAGTCGGTTTCTTGATCGAAATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCA-TA-TTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATGATGAAGTGCAGT-T-------------------AGTGA------------------------------ATAT---------------
droBia1 scf7180000302377:1758753-1758871 - ------------------------------------------------ATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCAC--------------------------------------------------------------------------------------------------
droTak1 scf7180000415388:255411-255591 + TTTTTCAGTTTTTTATTTACCTTAACAGGTGTCAGG-GCTT------AAT-CGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCA---------------------TTAA-TGCAATAAT-----A-------------------------------------------------
droEug1 scf7180000409472:386352-386471 + -----------------------------------------------AATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCAC--------------------------------------------------------------------------------------------------
dm3 chr3L:21567107-21567268 + dme-mir-193 Known_mirbase ----------------------------------------------CAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCATGTGAAGATTA-GAAAAA-T-----ACAGACAAA-------------------------------------------------
droSim2 3l:21084419-21084583 + dsi-mir-193 Known_mirbase ----------------------------------------------CAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCATGTGAAGATTA---AAAA-TGTTAAACTGACAAA-------------------------------------------------
droSec2 scaffold_11:1487336-1487500 + dse_189 confident ----------------------------------------------CAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCATGTGAAGATTA---AAAA-TGTTAAACTGACAAA-------------------------------------------------
droYak3 v2_chr3L_random_283:15557-15699 + dya_104 confident -----------------------------------------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTGATGTGAAGAT--------------------------------------------------------------------------
droEre2 scaffold_4784:21221187-21221381 + der_131 confident TTA---------------------------------------ATCGGAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTT-----GAATATTA---AAAAAA-----AA------A-----------ATAGTAGTGAACTTAAAAAATATTTGATACATTTCTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTTTTATTTTTTGATTTAATTA-------------------AT--CAATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAA-GTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGA------CG---AA-------AT-GAATTTA-TGTGAAAATATTTGA------------------------------------------------CSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................20118331.0018331147100743610
.....................................................................GGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2215563.00556331310122429
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2212263.00226355111811692
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211819.00819545021271
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221707.007070281696
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231433.00433180021250
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................221310.00310881000212
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................201288.0028816700265
.....................................................................GGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231283.0028359100223
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211252.002522111247
.....................................................................GGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241193.001938300182
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................211153.001531440009
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................211129.001295400120
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................191116.001165501060
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23189.00893700151
.....................................................................GGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................21187.00871300074
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22169.00694500024
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................22167.00672901037
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................19161.00614600015
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19149.0049500044
.....................................................................GGTTGGGATTTTTTAGATC...................................................................................................................................................................................19148.00482000028
.....................................................................GGTTGGGATTTTTTAGATCA..................................................................................................................................................................................20146.0046300043
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................18141.00412300018
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................22140.00403000010
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................23134.00341610017
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................21132.0032240008
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................20122.0022700015
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................20122.00221000012
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................21120.0020140006
.....................................................................GGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................24119.0019100018
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................22119.0019130015
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................22118.0018000117
.......................................................................TTGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................23118.0018120006
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................23118.0018170001
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................23115.001525008
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20115.0015000015
.....................................................................GGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................25112.0012000012
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24112.0012120000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAT......................................................................................................................22111.001120009
.....................................................................GGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................22111.001120009
.......................................................................TTGGGATTTTTTAGATCAGG................................................................................................................................................................................2028.0016160000
.......................................................................TTGGGATTTTTTAGATCAGCATA.............................................................................................................................................................................2318.00860002
.....................................................................GGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2218.00830005
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................2117.00723002
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2116.00660000
.......................................................................TTGGGATTTTTTAGATCT..................................................................................................................................................................................1816.00620004
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2316.00600006
...............................................................................................................................TACTGGCCTACTAAGTCCCAACC.....................................................................................................................2316.00631002
................................................................................................................................ACTGGCCTACTAAGTCCCAACT.....................................................................................................................2216.00620004
..................................................................................................................................TGGCCTACTAAGTCCCAACATT...................................................................................................................2215.00511003
................................................................................................................................ACTGGCCTACTAAGTCCC.........................................................................................................................1815.00550000
.....................................................................GGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2315.00520003
.....................................................................GGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2315.00520003
...............................................................................................................................TACTGGCCTACTAAGTCCCAAA......................................................................................................................2215.00500005
........................................................................TGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2214.00400004
.......................................................................TTGGGATTTTTTAGATCAGCACC.............................................................................................................................................................................2313.00320001
...............................................................................................................................TACTGGCCTACTAAGTCC..........................................................................................................................1813.00320001
.....................................................................GGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2313.00330000
.......................................................................TTGGGATTTTTTAGATCAGCTC..............................................................................................................................................................................2213.00330000
.....................................................................GGTTGGGATTTTTTAGATCT..................................................................................................................................................................................2013.00300003
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2313.00300003
.........................................................................GGGATTTTTTAGATCAGC................................................................................................................................................................................1813.00330000
.........................................................................GGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2112.00200002
...............................................................................................................................TACTGGCCTACTAAGTCCCAT.......................................................................................................................2112.00201001
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2212.00200002
.......................................................................TTGGGATTTTTTAGATCAGCCT..............................................................................................................................................................................2212.00220000
.....................................................................GGTTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2412.00210001
.......................................................................TTGGGATTTTTTAGATCAGCAGTTC...........................................................................................................................................................................2512.00210001
.......................................................................TTGGGATTTTTTAGATCAGCATC.............................................................................................................................................................................2312.00220000
........................................................................TGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2112.00200002
.......................................................................TTGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2412.00220000
.....................................................................GGTTGGGATTTTTTAGATCAA.................................................................................................................................................................................2112.00210001
..............................................................................................TATTGCTACAA-GTCAAAAATTTAT-TAT................................................................................................................................................2712.00200002
................................................................................................................................ACTGGCCTACTAAGTCCCAACATT...................................................................................................................2412.00200002
.......................................................................TTGGGATTTTTTAGATCAGCAGTCC...........................................................................................................................................................................2512.00210001
.....................................................................GGTTGGGATTTTTTAGATCC..................................................................................................................................................................................2012.00200002
.....................................................................GGTTGGGATTTTTTAGATCAGG................................................................................................................................................................................2212.00220000
.........................................................................GGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2012.00200002
..............................................................................................TATTGCTACAA-GTCAAAAATTTAT-T..................................................................................................................................................2512.00200002
...........................................................................GATTTTTTAGATCAGCAG..............................................................................................................................................................................1812.00210001
........................................................................TGGGATTTTTTAGATCAG.................................................................................................................................................................................1812.00200002
.....................................................................GGTTGGGATTTTTTAGATCACA................................................................................................................................................................................2211.00100001
.....................................................................GGTTGGGATTTTTTAGATCAC.................................................................................................................................................................................2111.00100001
.......................................................................TTGGGATTTTTTAGATCAGCCC..............................................................................................................................................................................2211.00100001
................................................................................................................................ACTGGCCTACTAAGTCCCA........................................................................................................................1911.00100001
........................................................................TGGGATTTTTTAGATCAGCAGTCC...........................................................................................................................................................................2411.00100001
.......................................................................TTGGGATTTTTTAGATCAGCAGTCT...........................................................................................................................................................................2511.00110000
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2311.00100001
...............................................................................................................................TACTGGCCTACTAAGTCCCAAG......................................................................................................................2211.00100001
droVir3
----------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATG-TA--TCGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACC----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................AGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2219659.0096592873721000010020000248146718139920138236000002212000000020000000000000002088001099500000066111400000
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2112013.002013813625012000100003325143722037590001111000000000000000000000000000600399300000001030000000
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2011689.001689151148200000000000138232412029140000000000000000000000000000000000100417100000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2211545.00154506570020000000020012912281606511242920001012050010001000000000000000000100442400200000000000000
.....................................................................AGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2111382.00138203130000000000086673592501481130000130000000000100000000000000000000871500200000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAAT......................................................................................................................2211333.00133303673900000000000203109122786720168170000102202000000000000000000000000030067100010000001000000
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2111102.00110200501220000000238154311122540792030000012020000001000000000000000000000219200001000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTC.........................................................................................................................191616.00616659430000000000021100001200000000000000000000000000000000000006000000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTC.........................................................................................................................181544.00544153610000000000003000101000000000000000000000000000000000000001000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................231505.0050501200010000100076460544271251030000000010100011000000000000000000000158100100000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231446.004460632000000000004429152618031600000000010000000000000000000000000200164000000000000000000
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221431.00431003001000000005024354425034500000001000000001000000000000000000300184300000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................221407.004070253000000000005039124216046570000010010000000000000000000000000000124000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCA..................................................................................................................................................................................201406.004060109100000000000660012607130000000000000000000000000000000000000245100000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211365.003650311000000000003631163925137440000012010000000000000000000000000000107100100000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAA.......................................................................................................................211327.003270331000000000000493821332606048000000100000000000000000000000000010025000000000000000000
.....................................................................AGTTGGGATTTTTTAGATC...................................................................................................................................................................................191312.003120292200000000000010000000000000000000000000000000000000000010016000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCA........................................................................................................................201310.003102332300000000000322623252305252000000000000000000000000000000000030034000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241296.00296071000000000005018201212011370000000000000000000000000000000000000146000000000000000000
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................201166.001660300000000000013015300120001012000000000000000000000000000000133100000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231143.0014323110000000000097011440613000000000000000000000000000000000000053200000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCAAT......................................................................................................................211107.00107122110000000000011722860161400000000000000000000000000000000000007000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................231102.00102052000000000000141120005000000000000000000000000000000000000036000000000000000000
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20191.0091001000000000001713019501218000000000000000000000000000000000000015000000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCAATA.....................................................................................................................22189.008906700000000000136141280171400000000000000000000000000000000000001000000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCAATT.....................................................................................................................22153.0053082000000000007211520111100000000100000000000000000000000000000000200000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCAATAT....................................................................................................................23148.0048121000000000007101034011800000000000000000000000000000000000000000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAATT.....................................................................................................................23144.004401910000000000030221204800000000000000000000000000000000001001000000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCA........................................................................................................................19135.00350770000000000032103202100000000000000000000000000000000003004000000000000000000
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19130.003008100000000000100001014000000000000000000000000000000000000014000000000000000000
......................................................................GTTGGGATTTTTTAGATCA..................................................................................................................................................................................19126.002603100000000000000011001000000000000000000000000000000000000019000000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCAA.......................................................................................................................20125.00250220000000000033005303400000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................22125.0025010000000000000110010000000000000000000000000000000000000000012000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22121.00210200000000000010112201300000000000000000000000000000000000008000000000000000000
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19120.00200010000000000010002303000000000000000000000000000000000001009000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................21120.002001800000000000000000100000000000000000000000000000000000000001000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAAC......................................................................................................................22118.001801610000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGG................................................................................................................................................................................22116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GTTGGGATTTTTTAGATC...................................................................................................................................................................................18115.001501500000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TGGCCTACTAAGTCTCAATATT...................................................................................................................22114.00140620000000000001001000200000000000000000000000000000000000002000000000000000000
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23114.00140000000000000011001002400000000000000000000000000000000000005000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23113.00130100000000000021001001000000000000000000000000000000000000007000000000000000000
.....................................................................AGTTGGGATTTTTTAGAT....................................................................................................................................................................................18113.00130700000000000001000000000000000000000000000000000000000000005000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................23112.00120100000000000001001200101000010000000000000000000000000000004000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24112.00120300000000000011010101100000000000000000000000000000000000003000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................24111.00110300000000000040000001200000000000000000000000000000000000001000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................22110.00100010000000000011002101100000000000000000000000000000000000002000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................22110.00100300000000000000000100000000000000000000000000000000000000006000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAT.................................................................................................................................................................................2119.0090000000000000000000100200000000000000000000000000000000000006000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2219.0090600000000000000001000000000000000000000000000000000000000000002000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2419.0090000000000000020000200000000000000000000000000000000000000005000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2218.0080200000000000000000001000000000000000000000000000000000000005000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2517.0070100000000000000000201000000000000000000000000000000000000003000000000000000000
.....................................................................AGTTGGGATTTTTTAGATT...................................................................................................................................................................................1917.0070100000000000000000000000000000000000000000000000000000000006000000000000000000
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................1816.0060200000000000020001000100000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2316.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAAA......................................................................................................................2216.0060210000000000010000101000000000000000000000000000000000000000000000000000000000
........................................................................TGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2115.0050000000000000010000001100000000000000000000000000000000000002000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGG................................................................................................................................................................................2115.0050500000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCT........................................................................................................................2015.0050400000000000000000100000000000000000000000000000000000000000000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2315.0050000000000000001001000000000000000000000000000000000000000003000000000000000000
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2215.0050000000000000011000000000000000000000000000000000000000000003000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2414.0040000000000000000000101100000000000000000000000000000000000001000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCT..........................................................................................................................1814.0040200000000000001000001000000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAC.................................................................................................................................................................................2114.0040000000000000000000000100000000000000000000000000000000000003000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2314.0040200000000000000000000000000000000000000000000000000000000002000000000000000000
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2214.0040000000000000010001000000000000000000000000000000000000000002000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCG..................................................................................................................................................................................2013.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2413.0030000000000000000000001000000000000000000000000000000000000002000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2013.0030100000000000000000000000000000000000000000000000000000000002000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2313.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGG................................................................................................................................................................................2013.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGGGATTTTTTAGATCT..................................................................................................................................................................................2013.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2113.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................GATTTTTTAGATCAGCAG..............................................................................................................................................................................1812.0020000000000000000000001100000000000000000000000000000000000000000000000000000000
..............................................................................................................................CTACTGGCCTACTAAGTCTCAAT......................................................................................................................2312.0020000000000000011000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACTGGCCTACTAAGTCTCAATATT...................................................................................................................2412.0020100000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................TGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2112.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAATAA....................................................................................................................2412.0020000000000000010000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAAG......................................................................................................................2212.0020100000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCAT.......................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.................................................................................................................................CTGGCCTACTAAGTCTCAAT......................................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................CTGGCCTACTAAGTCTCAA.......................................................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2312.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCTCC........................................................................................................................2012.0020100000000000000000001000000000000000000000000000000000000000000000000000000000
droMoj3
----------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA-----TT-ATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTT--CAA--------------TT-AATTTAA-TTTTAAAAT-----A-------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................AGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2212092.0020921107691282228
.....................................................................AGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2111484.00148420597867018
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................221561.005616120933609
.....................................................................AGTTGGGATTTTTTAGATCA..................................................................................................................................................................................201401.004013015324203
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................201373.003731014123001
.....................................................................AGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231178.00178104612902
.....................................................................AGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241152.0015210678211
.....................................................................AGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................231147.0014700569001
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221140.0014000498605
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211110.0011000367301
...............................................................................................................................TACTGGCCTACTAAGTCTCAAT......................................................................................................................22178.0078120283800
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................23167.006700273703
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................21162.006200253601
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................23147.004700242201
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................21143.004320172301
...............................................................................................................................TACTGGCCTACTAAGTCTCA........................................................................................................................20136.003610191600
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................22129.002900111800
.....................................................................AGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................22126.002600101600
.....................................................................AGTTGGGATTTTTTAGATC...................................................................................................................................................................................19120.00200051500
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19120.00200061400
...............................................................................................................................TACTGGCCTACTAAGTCTCAA.......................................................................................................................21120.0020209900
................................................................................................................................ACTGGCCTACTAAGTCTCAATAT....................................................................................................................23120.00203061100
................................................................................................................................ACTGGCCTACTAAGTCTCAATA.....................................................................................................................22118.0018506700
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................20116.0016008800
.....................................................................AGTTGGGATTTTTTAGAT....................................................................................................................................................................................18115.00150051000
.....................................................................AGTTGGGATTTTTTAGATCAT.................................................................................................................................................................................21110.0010007300
.....................................................................AGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................24110.0010006400
................................................................................................................................ACTGGCCTACTAAGTCTCAAT......................................................................................................................21110.0010105400
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2219.009005400
................................................................................................................................ACTGGCCTACTAAGTCTCAATT.....................................................................................................................2218.008004400
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2318.008004400
.....................................................................AGTTGGGATTTTTTAGATT...................................................................................................................................................................................1917.007005200
.....................................................................AGTTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2416.006002400
.....................................................................AGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2215.005002300
..................................................................................................................................TGGCCTACTAAGTCTCAATATT...................................................................................................................2214.004002110
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2414.004001300
................................................................................................................................ACTGGCCTACTAAGTCTCAA.......................................................................................................................2014.004001300
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................1814.004000400
......................................................................GTTGGGATTTTTTAGATCA..................................................................................................................................................................................1913.003001200
..................................................................................................................................TGGCCTACTAAGTCTCAATAT....................................................................................................................2113.003002100
.....................................................................AGTTGGGATTTTTTAGATCT..................................................................................................................................................................................2013.003001200
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2213.003002100
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................1912.002001100
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2212.002000200
.....................................................................AGTTGGGATTTTTTAGATCAGTTT..............................................................................................................................................................................2412.002000200
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2312.002001100
.....................................................................AGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2312.002000200
................................................................................................................................ACTGGCCTACTAAGTCTCA........................................................................................................................1912.002001100
......................................................................................................................................CTACTAAGTCTCAATA.....................................................................................................................1611.001000100
.....................................................................AGTTGGGATTTTTTAGAA....................................................................................................................................................................................1811.001001000
................................................................................................................................ACTGGCCTACTAAGTCTC.........................................................................................................................1811.001001000
....................................................................TAGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2311.001000100
.....................................................................AGTTGGGATTTTTTAGATCATA................................................................................................................................................................................2211.001000100
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2111.001001000
.....................................................................AGTTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2411.001001000
...............................................................................................................................TACTGGCCTACTAAGTCTCAT.......................................................................................................................2111.001001000
....................................................................TAGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2211.001001000
.....................................................................AGTTGGGATTTTTTAGATCAGAT...............................................................................................................................................................................2311.001000100
......................................................................GTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2211.001001000
droGri2
----------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTT-TA--TCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCC----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...............................................................................................................................TACTGGCCTACTAAGTCCCAAT......................................................................................................................2219.00990
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2112.00211
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................2011.00110
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2211.00110
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2311.00110
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2311.00101
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2211.00101
dp5
-----------------------------------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG-TA-TTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-------------AAGACTA-TGTTAAAATGAGTGA-------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................AGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2211375.00137512220572075412012
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2011320.00132031602140107413000
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2211111.00111103915619995208
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................2211054.001054041129570440000
.....................................................................AGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231523.0052301203404770000
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211486.0048611203804341000
.....................................................................AGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241466.00466030604543000
.....................................................................AGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................211397.00397090403813000
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................211354.0035407059027530100
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221259.002590713502133000
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211164.00164050601520001
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231134.001340102601070000
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................20185.00850210360280000
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................22178.007803073020000
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................23172.007205259060000
.....................................................................AGTTGGGATTTTTTAGATCA..................................................................................................................................................................................20172.007213020651000
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................21170.007006063010000
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................21166.00660230200230000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................23158.005804052020000
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19143.004304000381000
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................19136.003602031030000
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23132.003201070231000
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19130.003001050240000
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24130.0030010100190000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACC.....................................................................................................................23127.002701026000000
................................................................................................................................ACTGGCCTACTAAGTCCCAACC.....................................................................................................................22126.002600025010000
..............................................................................................................................CTACTGGCCTACTAAGTCCCAAC......................................................................................................................23125.002501024000000
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................20120.002001000180010
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23117.001700000170000
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20116.001600000140020
.....................................................................AGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................23114.001400040100000
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................22113.001300000130000
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................18113.001300000130000
.....................................................................AGTTGGGATTTTTTAGATC...................................................................................................................................................................................19112.00121304040000
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................22112.001200012000000
.....................................................................AGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2519.0090001080000
..................................................................................................................................TGGCCTACTAAGTCCCAACATT...................................................................................................................2219.0090108000000
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2118.0080004040000
................................................................................................................................ACTGGCCTACTAAGTCCCAACAC....................................................................................................................2318.0080008000000
...............................................................................................................................TACTGGCCTACTAAGTCC..........................................................................................................................1817.0070007000000
..............................................................................................TATTGCTATACAGCCG-TA-TTAAT....................................................................................................................................................2317.0070000070000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2316.0060006000000
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2216.0060004020000
......................................................................GTTGGGATTTTTTAGATCA..................................................................................................................................................................................1915.0050000050000
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2215.0050000050000
................................................................................................................................ACTGGCCTACTAAGTCCCAACT.....................................................................................................................2215.0050005000000
.....................................................................AGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2415.0050000050000
.......................................................................TTGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2514.0040000040000
.....................................................................AGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2414.0040001030000
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2314.0040011020000
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2214.0040000040000
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................2014.0040000040000
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2114.0040003010000
.................................................................................................................................CTGGCCTACTAAGTCCCAACA.....................................................................................................................2113.0030102000000
........................................................................TGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2413.0030100020000
.....................................................................AGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2213.0030000030000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAA......................................................................................................................2213.0030002010000
................................................................................................................................ACTGGCCTACTAAGTCCCAA.......................................................................................................................2013.0030200010000
.....................................................................AGTTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2513.0030001020000
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2213.0030100020000
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2012.0020001010000
.....................................................................AGTTGGGATTTTTTAGATCAT.................................................................................................................................................................................2112.0020000020000
.......................................................................TTGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2412.0020000020000
.................................................................................................................................CTGGCCTACTAAGTCCCAAC......................................................................................................................2012.0020002000000
..................................................................................................................................TGGCCTACTAAGTCCCAAC......................................................................................................................1912.0020101000000
..................................................................................................................................TGGCCTACTAAGTCCCAACAT....................................................................................................................2112.0020002000000
......................................................................GTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2212.0020001010000
.....................................................................AGTTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2612.0020000020000
.......................................................................TTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2212.0020001010000
.....................................................................AGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2212.0020001010000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAT......................................................................................................................2212.0020001010000
................................................................................................................................ACTGGCCTACTAAGTCCCA........................................................................................................................1912.0020001010000
.............................................................................................TTATTGCTATACAGCCG-TA-TT.......................................................................................................................................................2112.0020000020000
.............................................................................................................................TCTACTGGCCTACTAAGTCCCAAC......................................................................................................................2412.0020002000000
........................................................................TGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2212.0020000020000
......................................................................GTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2112.0020000020000
.........................................................................GGGATTTTTTAGATCAGC................................................................................................................................................................................1811.0010100000000
..............................................................................................TATTGCTATACAGCCG-TA-TT.......................................................................................................................................................2011.0010000010000
.....................................................................AGTTGGGATTTTTTAGATCAGG................................................................................................................................................................................2211.0010000010000
........................................................................................................................AATCTTCTACTGGCCTACTAAGTCCCAAC......................................................................................................................2911.0010001000000
........................................................................TGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2011.0010000010000
...................................................................................................................................GGCCTACTAAGTCCCAAC......................................................................................................................1811.0010001000000
droPer2
-----------------------------------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG-TA-TTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-------------AAGACTA-TGTTAAAATGAGTGA-------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2212903.00290303201329151527
.....................................................................AGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2211640.001640511074586613
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2011546.00154681205729477
.....................................................................AGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2311386.00138601406377323
.....................................................................AGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2411321.00132108076154012
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2211016.00101605042456918
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211902.0090201003285622
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211726.0072601102894224
.....................................................................AGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................211677.0067700024342311
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................211586.0058607028728111
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231321.003210101471703
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................221190.00190024081850
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................211140.00140014049770
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................201113.00113010039640
.....................................................................AGTTGGGATTTTTTAGATCA..................................................................................................................................................................................201101.0010101026722
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23175.007500030432
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19155.005504017340
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20149.004904019260
.....................................................................AGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................25143.004300023200
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................22140.004000016240
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24139.003900014250
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23138.003800016220
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................20136.003600019161
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................23135.003501014200
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19130.003001015140
.....................................................................AGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................24130.003000012180
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................22127.00270207180
.....................................................................AGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................23124.00240004200
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................18119.00190004150
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22118.00180002160
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................22117.00170007100
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................19116.00160006100
..............................................................................................TATTGCTATACAGCCG-TA-TTAAT....................................................................................................................................................23115.0015000780
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................23113.0013000760
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................22113.0013000490
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................22111.0011000380
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................21111.00110000101
.....................................................................AGTTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................25111.0011000470
......................................................................GTTGGGATTTTTTAGATCA..................................................................................................................................................................................19111.0011000470
................................................................................................................................ACTGGCCTACTAAGTCCCAA.......................................................................................................................20110.0010000460
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2317.007010330
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2117.007000340
.....................................................................AGTTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2417.007000340
.....................................................................AGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2417.007000340
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................2317.007010330
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................2117.007010240
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2216.006000222
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2016.006000060
.............................................................................................TTATTGCTATACAGCCG-TA-TT.......................................................................................................................................................2115.005000050
.....................................................................AGTTGGGATTTTTTAGATC...................................................................................................................................................................................1915.005110210
..............................................................................................TATTGCTATACAGCCG-TA-TT.......................................................................................................................................................2014.004000130
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2314.004010030
..................................................................................................................................TGGCCTACTAAGTCCCAACATT...................................................................................................................2214.004000040
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................2014.004000130
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2114.004000220
.....................................................................AGTTGGGATTTTTTAGAT....................................................................................................................................................................................1814.004000220
.....................................................................AGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2313.003000030
.....................................................................AGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2213.003000300
.......................................................................TTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2213.003000030
.......................................................................TTGGGATTTTTTAGATCAGCCT..............................................................................................................................................................................2213.003000030
.....................................................................AGTTGGGATTTTTTAGATCAT.................................................................................................................................................................................2113.003000030
...............................................................................................................................TACTGGCCTACTAAGTCC..........................................................................................................................1813.003000030
.............................................................................................TTATTGCTATACAGCCG-TA-TTAAT....................................................................................................................................................2413.003000210
.....................................................................AGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2213.003010020
.....................................................................AGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2313.003000030
......................................................................GTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2113.003000210
..............................................................................................TATTGCTATACAGCCG-TA-TTA......................................................................................................................................................2113.003000030
........................................................................TGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2113.003000030
.......................................................................TTGGGATTTTTTAGATCAGCACC.............................................................................................................................................................................2313.003000120
........................................................................TGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2412.002000020
.....................................................................AGTTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2612.002000110
........................................................................TGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2312.002010100
.......................................................................TTGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2512.002000200
.....................................................................AGTTGGGATTTTTTAGATCAGCAAA.............................................................................................................................................................................2512.002000110
droAna3
-----------------------------------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCA-TA-TTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAT---------------------TG---AAAATA-----AAATACAAATTTTGGTGAAAAGTGTATTGAA--------------------------TSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................GGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2211950.00195020063111874
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2011933.001933000265221646
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2211347.001347141064056636
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221738.0073841020549479
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211736.00736160033216372
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................211474.00474200435424
.....................................................................GGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231306.00306200455254
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211295.002952001727114
.....................................................................GGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................211285.00285400518222
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................221269.0026911420205128
.....................................................................GGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241229.00229000334192
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................201213.002133700130163
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................201156.00156000165135
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231136.00136210501073
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................211128.00128220016288
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................191115.0011500017098
.....................................................................GGTTGGGATTTTTTAGATCA..................................................................................................................................................................................201106.0010610015486
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................22165.006537007021
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19152.005210023127
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................22147.004710013033
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22141.004100017024
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20141.004120015123
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................23140.00400007132
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23126.00260007019
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................22126.00260001223
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................22125.00250008215
.....................................................................GGTTGGGATTTTTTAGATC...................................................................................................................................................................................19124.00240001023
.....................................................................GGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................24123.00230000023
......................................................................GTTGGGATTTTTTAGATCA..................................................................................................................................................................................19121.00210002019
.....................................................................GGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................22119.00190000019
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23118.00180007011
......................................................................GTTGGGATTTTTTAGATC...................................................................................................................................................................................18116.00160000016
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................23115.0015300615
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................21114.00141200200
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................23113.0013600007
......................................................................GTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................23112.00120001011
........................................................................TGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................21111.0011000308
.....................................................................GGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................22110.0010000118
................................................................................................................................ACTGGCCTACTAAGTCCCAA.......................................................................................................................2019.009500103
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................1819.009000702
.....................................................................GGTTGGGATTTTTTAGAT....................................................................................................................................................................................1818.008000008
......................................................................GTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2118.008000107
.........................................................................GGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2017.007600100
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................1917.007200005
.....................................................................GGTTGGGATTTTTTAGATCAT.................................................................................................................................................................................2117.007000115
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2016.006000204
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2316.006000105
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................2016.006000105
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2416.006000303
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2115.005000401
.....................................................................GGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2315.005000302
................................................................................................................................ACTGGCCTACTAAGTCCCAACT.....................................................................................................................2215.005200003
..................................................................................................................................TGGCCTACTAAGTCCCAACAT....................................................................................................................2114.004200101
..................................................................................................................................TGGCCTACTAAGTCCCAACATT...................................................................................................................2214.004300100
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2114.004000202
.......................................................................TTGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2513.003000102
.....................................................................GGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2413.003000012
.....................................................................GGTTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2413.003000003
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2213.003000102
........................................................................TGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2113.003000102
.......................................................................TTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2213.003000201
.....................................................................GGTTGGGATTTTTTAGATCAA.................................................................................................................................................................................2113.003000003
........................................................................TGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2312.002000200
.......................................................................TTGGGATTTTTTAGATCAGCATA.............................................................................................................................................................................2312.002000200
...............................................................................................................................TACTGGCCTACTAAGTCCCAAT......................................................................................................................2212.002200000
..................................................................................................................................TGGCCTACTAAGTCCCAACA.....................................................................................................................2012.002200000
...............................................................................................................................TACTGGCCTACTAAGTCCCT........................................................................................................................2012.002000002
........................................................................TGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2412.002000101
.........................................................................GGGATTTTTTAGATCAGC................................................................................................................................................................................1812.002000101
.......................................................................TTGGGATTTTTTAGATCAGCTA..............................................................................................................................................................................2212.002000101
.......................................................................TTGGGATTTTTTAGATCAGG................................................................................................................................................................................2012.002000101
...............................................................................................................................TACTGGCCTACTAAGTCCCAT.......................................................................................................................2112.002000101
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2312.002100001
........................................................................TGGGATTTTTTAGATCAGCAGTC............................................................................................................................................................................2312.002000110
......................................................................GTTGGGATTTTTTAGATCT..................................................................................................................................................................................1912.002000002
..............................................................................................TATTGCTATATTGCCA-TA-TTC......................................................................................................................................................2112.002100001
...............................................................................................................................TACTGGCCTACTAAGTCCCAAA......................................................................................................................2212.002000002
........................................................................TGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2112.002000101
.................................................................................................................................CTGGCCTACTAAGTCCCAACA.....................................................................................................................2112.002200000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2512.002000101
................................................................................................................................ACTGGCCTACTAAGTCCCA........................................................................................................................1912.002100001
........................................................................TGGGATTTTTTAGATCAG.................................................................................................................................................................................1812.002000011
.......................................................................TTGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2412.002000002
......................................................................GTTGGGATTTTTTAGATCAT.................................................................................................................................................................................2012.002000002
.............................................................................................TTATTGCTATATTGCCA-TA-TT.......................................................................................................................................................2112.002000002
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2112.002000200
.....................................................................GGTTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2512.002000002
.....................................................................GGTTGGGATTTTTTAGATCT..................................................................................................................................................................................2012.002000002
........................................................................TGGGATTTTTTAGATCAGCAGTTC...........................................................................................................................................................................2411.001000001
................................................................................................................................ACTGGCCTACTAAGTCCCAACATT...................................................................................................................2411.001000001
.....................................................................GGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2311.001000001
droBip1
-----------------------------------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCA-TA-TTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACT-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTTGTCAGTTTTTGATTAACTTAAATATAAGCTG-------------GTTCTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCA-TA-TTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTG------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCA-TA-TTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGC----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------------------------------TA----CGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCAC--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T--GCCAGTTATTTTTGAGATTTAAAAGAAGTCGGTTTCTTGATCGAAATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCA-TA-TTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATGATGAAGTGCAGT-T-------------------AGTGA------------------------------ATAT---------------SizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------ATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCAC--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTTTTCAGTTTTTTATTTACCTTAACAGGTGTCAGG-GCTT------AAT-CGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCA---------------------TTAA-TGCAATAAT-----A-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
-----------------------------------------------AATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCAC--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
----------------------------------------------CAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCATGTGAAGATTA-GAAAAA-T-----ACAGACAAA-------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
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droSim2
----------------------------------------------CAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCATGTGAAGATTA---AAAA-TGTTAAACTGACAAA-------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................20111546.00115461104515270445302000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................2216117.006117110001133587300000000000
.....................................................................GGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2214547.00454742916601423000000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................2011870.001870800129183200000000000
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2211830.00183056620321122920241000000
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................2311539.001539200033150400000000000
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2111426.00142638200114102900000000000
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................2211168.001168500034112900000000000
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................211888.0088880002585500000000000
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................181771.00771270011872500000000000
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................191619.00619410001556300000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................211619.0061960001859500000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231494.00494332301215500010000000
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................191427.0042778100834000000000000
................................................................................................................................ACTGGCCTACTAAGTCCCA........................................................................................................................191419.004191000641200000000000
...............................................................................................................................TACTGGCCTACTAAGTCC..........................................................................................................................181375.0037510000735800000000000
................................................................................................................................ACTGGCCTACTAAGTCCCAA.......................................................................................................................201288.002880001528200000000000
.....................................................................GGTTGGGATTTTTTAGAT....................................................................................................................................................................................181253.002534000324600000000000
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211236.002360000522900110000000
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221223.002230000221413120000000
.....................................................................GGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231190.0019058000312900000000000
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................211173.0017313801013300000000000
................................................................................................................................ACTGGCCTACTAAGTCCC.........................................................................................................................181167.001675000415800000000000
..................................................................................................................................TGGCCTACTAAGTCCCAACAT....................................................................................................................211161.001610000915200000000000
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................211149.001491490000000000000000
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................201143.001430000314000000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................231138.001380000513300000000000
.....................................................................GGTTGGGATTTTTTAGATCA..................................................................................................................................................................................201117.0011712000110400000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................231103.001031020000000000001000
.....................................................................GGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241101.00101500029400000000000
.....................................................................GGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................21199.00991400058000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24195.00955610013700000000000
.....................................................................GGTTGGGATTTTTTAGATC...................................................................................................................................................................................19191.00913600015300001000000
........................................................................TGGGATTTTTTAGATCAG.................................................................................................................................................................................18184.0084000028200000000000
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23176.0076000017500000000000
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19167.0067200016400000000000
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22158.0058580000000000000000
..................................................................................................................................TGGCCTACTAAGTCCCAACA.....................................................................................................................20152.0052000005200000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................23142.0042420000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................23126.0026260000000000000000
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................20121.0021210000000000000000
.......................................................................TTGGGATTTTTTAGATCAGG................................................................................................................................................................................20119.0019190000000000000000
................................................................................................................................ACTGGCCTACTAAGTCCCAACATA...................................................................................................................24119.0019000001900000000000
.......................................................................TTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................22116.0016160000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACAT....................................................................................................................24113.0013000001300000000000
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................21112.0012120000000000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................25112.0012200001000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................22110.0010100000000000000000
..................................................................................................................................TGGCCTACTAAGTCCCAACATA...................................................................................................................2219.00900000900000000000
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2219.00990000000000000000
..................................................................................................................................TGGCCTACTAAGTCCCAA.......................................................................................................................1819.00900000900000000000
..................................................................................................................................TGGCCTACTAAGTCCCAAC......................................................................................................................1919.00900000900000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................2318.00880000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2118.00880000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2517.00750000000000002000
.....................................................................GGTTGGGATTTTTTAGATCAGG................................................................................................................................................................................2216.00660000000000000000
.........................................................................GGGATTTTTTAGATCAGC................................................................................................................................................................................1816.00660000000000000000
......................................................................GTTGGGATTTTTTAGATCA..................................................................................................................................................................................1915.00500000500000000000
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2315.00510000400000000000
...................................................................................................................................GGCCTACTAAGTCCCAAC......................................................................................................................1815.00500000500000000000
....................................................................TGGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2315.00540001000000000000
......................................................................GTTGGGATTTTTTAGATC...................................................................................................................................................................................1814.00400000400000000000
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2214.00420000200000000000
.........................................................................GGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2014.00400000400000000000
........................................................................TGGGATTTTTTAGATCAGCAGTTAT..........................................................................................................................................................................2514.00400000400000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGAA............................................................................................................................................................................2413.00330000000000000000
.....................................................................GGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2213.00330000000000000000
.................................................................................................................................CTGGCCTACTAAGTCCCAAC......................................................................................................................2013.00300000300000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2413.00330000000000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2513.00330000000000000000
...........................................................................GATTTTTTAGATCAGCAG..............................................................................................................................................................................1812.00210000100000000000
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................2012.00220000000000000000
...................................................................ATGGTTGGGATTTTTTAGATC...................................................................................................................................................................................2112.00220000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAAA.............................................................................................................................................................................2312.00210000000001000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACATA...................................................................................................................2512.00200000200000000000
...................................................................................................................................GGCCTACTAAGTCCCAACAT....................................................................................................................2012.00200000200000000000
.......................................................................TTGGGATTTTTTAGATCAC.................................................................................................................................................................................1912.00220000000000000000
............................................................................ATTTTTTAGATCAGCAGT.............................................................................................................................................................................1812.00220000000000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2312.00220000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGTTA...........................................................................................................................................................................2512.00200000200000000000
.....................................................................GGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2212.00220000000000000000
...................................................................................................................................GGCCTACTAAGTCCCAACA.....................................................................................................................1912.00200000200000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCT........................................................................................................................2012.00220000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCATA.............................................................................................................................................................................2312.00220000000000000000
........................................................................TGGGATTTTTTAGATCAGCAGTTA...........................................................................................................................................................................2412.00200000200000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACATAA..................................................................................................................2612.00200000200000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACC.....................................................................................................................2312.00220000000000000000
..............................................................................................................................CTACTGGCCTACTAAGTCCCAAC......................................................................................................................2312.00200000200000000000
.......................................................................TTGGGATTTTTTAGATCT..................................................................................................................................................................................1812.00220000000000000000
..................................................................TATGGTTGGGATTTTTTAGATC...................................................................................................................................................................................2212.00220000000000000000
.........................................................................GGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2112.00200000200000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGTC............................................................................................................................................................................2412.00220000000000000000
.....................................................................GGTTGGGATTTTTTAGATCT..................................................................................................................................................................................2011.00110000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGACT...........................................................................................................................................................................2511.00110000000000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2511.00110000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAGAC............................................................................................................................................................................2411.00110000000000000000
.................................................................................................................................CTGGCCTACTAAGTCCCAA.......................................................................................................................1911.00100000100000000000
....................................................................TGGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2211.00100000100000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2611.00100000100000000000
.......................................................................TTGGGATTTTTTAGATCAGCACG.............................................................................................................................................................................2311.00110000000000000000
.................................................................................................................................CTGGCCTACTAAGTCCCAACAT....................................................................................................................2211.00100000100000000000
..................................................................................................................................TGGCCTACTAAGTCCCAACATAA..................................................................................................................2311.00100000100000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2311.00110000000000000000
.......................................................................TTGGGATTTTTTAGATCAGCAAAA............................................................................................................................................................................2411.00110000000000000000
................................................................................................................................ACTGGCCTACTAAGTCCCAACATAA..................................................................................................................2511.00100000100000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGAC............................................................................................................................................................................2611.00110000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACGC....................................................................................................................2411.00110000000000000000
........................................................................TGGGATTTTTTAGATCAGCAGTTATT.........................................................................................................................................................................2611.00100000100000000000
......................................................................GTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2111.00110000000000000000
...............................................................................................................................TACTGGCCTACTAAGTCCT.........................................................................................................................1911.00110000000000000000
................................................................................................................................ACTGGCCTACTAAGTCCCAATT.....................................................................................................................2211.00110000000000000000
.....................................................................GGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2411.00110000000000000000
.......................................................................TTGGGATTTTTTAGATCTT.................................................................................................................................................................................1980.13110000000000000000
.......................................................................................................................................................................................................AAA-TGTTAAACTGAA....................................................15200.05100000001000000000
droSec2
----------------------------------------------CAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCATGTGAAGATTA---AAAA-TGTTAAACTGACAAA-------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2011541.0015411121537
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................221924.00924725910
.....................................................................GGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................221538.00538000538
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................221393.00393001392
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211275.00275101273
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231228.00228001227
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................231189.00189010188
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211186.00186010185
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................201147.00147400143
.....................................................................GGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................21174.007401073
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................21172.007250067
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................22171.007160065
.....................................................................GGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................23161.006100061
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................21149.004900049
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................22146.004600046
.....................................................................GGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................24142.004210140
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19141.004100041
.....................................................................GGTTGGGATTTTTTAGATCA..................................................................................................................................................................................20133.003300033
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22131.003101030
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19130.003000030
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................19128.002800028
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................18117.001700017
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23115.001500015
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................22111.00112009
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2019.0090108
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................2118.0080008
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2018.0080008
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2318.0080008
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2218.0080008
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2418.0080008
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................2017.0070007
.....................................................................GGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2216.0060006
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2116.0060006
.....................................................................GGTTGGGATTTTTTAGATC...................................................................................................................................................................................1916.0060006
.....................................................................GGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2416.0060006
...............................................................................................................................TACTGGCCTACTAAGTCCCAAT......................................................................................................................2216.0060006
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................2314.0040004
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2014.0040004
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2214.0040004
...............................................................................................................................TACTGGCCTACTAAGTCCCAAA......................................................................................................................2214.0042002
................................................................................................................................ACTGGCCTACTAAGTCCCA........................................................................................................................1913.0031002
........................................................................TGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2413.0030003
................................................................................................................................ACTGGCCTACTAAGTCCCAA.......................................................................................................................2013.0030003
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................2313.0030003
...............................................................................................................................TACTGGCCTACTAAGTCCCAT.......................................................................................................................2113.0030003
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2213.0030003
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2313.0030003
.....................................................................GGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2413.0030003
.....................................................................GGTTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2512.0020002
........................................................................TGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2112.0020002
.......................................................................TTGGGATTTTTTAGATCAGCATA.............................................................................................................................................................................2312.0020002
......................................................................GTTGGGATTTTTTAGATC...................................................................................................................................................................................1812.0020002
.....................................................................GGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2512.0020002
..................................................................................................................................TGGCCTACTAAGTCCCAACA.....................................................................................................................2012.0020002
...............................................................................................................................TACTGGCCTACTAAGTCCCTT.......................................................................................................................2112.0020011
.....................................................................GGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2212.0020002
.......................................................................TTGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2312.0020002
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2112.0020002
..............................................................................................TATTGCTATATAGCCA-TA-TTTATAAAT................................................................................................................................................2711.0010001
...............................................................................................................................TACTGGCCTACTAAGTCCCT........................................................................................................................2011.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAGTCT...........................................................................................................................................................................2511.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAAAA............................................................................................................................................................................2411.0010001
...............................................................................................................................TACTGGCCTACTAAGTCCCAACG.....................................................................................................................2311.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAGTTTG..........................................................................................................................................................................2611.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2311.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAGAA............................................................................................................................................................................2411.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAGAAC...........................................................................................................................................................................2511.0010001
.............................................................................................TTATTGCTATATAGCCA-TA-TT.......................................................................................................................................................2111.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2511.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAAA.............................................................................................................................................................................2311.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2311.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGCGA..............................................................................................................................................................................2411.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGG................................................................................................................................................................................2211.0010001
........................................................................TGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2111.0010001
........................................................................TGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2111.0010001
..........................................................................................................................................TAAGTCCCAACATAATGAGAGT...........................................................................................................2211.0010001
...............................................................................................................................TACTGGCCTACTAAGTCCCATT......................................................................................................................2221.0020002
................................................................................................................................ACTGGCCTACTAAGTCCTT........................................................................................................................1911.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGTT...............................................................................................................................................................................2311.0010001
................................................................................................................................ACTGGCCTACTAAGTCCCAACT.....................................................................................................................2211.0010001
..........................................................................GGATTTTTTAGATCAGCA...............................................................................................................................................................................1811.0010001
........................................................................TGGGATTTTTTAGATCAGCAGTG............................................................................................................................................................................2311.0010001
.......................................................................TTGGGATTTTTTAGATCAGG................................................................................................................................................................................2011.0010001
.....................................................................GGTTGGGATTTTTTAGATCAGCAGAA............................................................................................................................................................................2611.0010001
...............................................................................................................................TACTGGCCTACTAAGTCC..........................................................................................................................1811.0010001
.......................................................................TTGGGATTTTTTAGATCAGCAGTCC...........................................................................................................................................................................2511.0010001
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2211.0011000
.......................................................................TTGGGATTTTTTAGATCAGCAGTAT...........................................................................................................................................................................2511.0010001
........................................................................TGGGATTTTTTAGATCAGCAGAA............................................................................................................................................................................2311.0010001
...............................................................................................................................TACTGGCCTACTAAGTCCCC........................................................................................................................2011.0010001
.......................................................................TTGGGATTTTTTAGATCAGTT...............................................................................................................................................................................2120.5010001
................................................................................................................................ACTGGCCTACTAAGTCCCATT......................................................................................................................2120.5010001
.......................................................................TTGGGATTTTTTAGATCACAG...............................................................................................................................................................................2140.2510001
droYak3
-----------------------------------------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTGATGTGAAGAT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2022212.004424366420021454220000
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2221449.5028992800008091794160000
.....................................................................GGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2221230.50246122760106312100000
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................222556.001112020032577780000
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................212358.5071718920013439200000
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................212294.00588130019438730000
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................212266.505333150006914540000
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................232183.003661410006615810000
.....................................................................GGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................232104.50209413004811520000
.....................................................................GGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................24269.0013813000358910000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................22264.5012962720243400000
.....................................................................GGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................21244.50896000305210000
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................21239.50792600244700000
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19228.50571400083500000
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23228.005611000133200000
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................20226.50537400172500000
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................21225.0050430001600000
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22224.00483000103500000
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20216.50330000112200000
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24214.00281100061100000
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................23213.5027000052200000
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2229.501930007900000
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................1829.001850004900000
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................2329.0018310041000000
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2329.0018140002200000
.......................................................................TTGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2328.5017170000000000
.....................................................................GGTTGGGATTTTTTAGATC...................................................................................................................................................................................1927.5015150000000000
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................1927.0014000041000000
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2227.001450000900000
.....................................................................GGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2527.001410006700000
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2326.501321003700000
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................2226.501300005710000
.....................................................................GGTTGGGATTTTTTAGATCA..................................................................................................................................................................................2026.001210005510000
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................2226.001250002500000
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................2225.501124003200000
.......................................................................TTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2125.001070001200000
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2024.50900003510000
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2224.50900002700000
.......................................................................TTGGGATTTTTTAGATCAGG................................................................................................................................................................................2024.50990000000000
........................................................................TGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2123.50700003400000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................2323.50731002100000
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2123.00630000300000
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................1922.50511003000000
.....................................................................GGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2322.00430000100000
.....................................................................GGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2222.00430000100000
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2322.00400003100000
........................................................................TGGGATTTTTTAGATCAGCAGG.............................................................................................................................................................................2222.00400002200000
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2021.50310000200000
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................2121.50300001200000
.....................................................................GGTTGGGATTTTTTAGATCAGG................................................................................................................................................................................2221.50330000000000
........................................................................TGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2321.50300000300000
.....................................................................GGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2421.50300000300000
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................2021.50330000000000
........................................................................TGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2121.50300000300000
.........................................................................GGGATTTTTTAGATCAGC................................................................................................................................................................................1821.50330000000000
.......................................................................TTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2221.50310000200000
.......................................................................TTGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2521.00210001000000
....................................................................TGGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2321.00220000000000
..............................................................................................TATTGCTATATAGCCA-TA-TTT......................................................................................................................................................2121.00201001000000
.....................................................................GGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2321.00220000000000
........................................................................TGGGATTTTTTAGATCAG.................................................................................................................................................................................1821.00200000200000
.......................................................................TTGGGATTTTTTAGATCAGCCT..............................................................................................................................................................................2221.00200001100000
.......................................................................TTGGGATTTTTTAGATCAC.................................................................................................................................................................................1921.00210000100000
......................................................................GTTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2321.00220000000000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAA......................................................................................................................2221.00200001100000
...............................................................................................................................TACTGGCCTACTAAGTCCCAT.......................................................................................................................2121.00210000100000
...............................................................................................................................TACTGGCCTACTAAGTCCCG........................................................................................................................2021.00220000000000
......................................................................GTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2221.00210000100000
.....................................................................GGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2421.00200000200000
...............................................................................................................................TACTGGCCTACTAAGTCCCAAT......................................................................................................................2221.00200001100000
.............................................................................TTTTTTAGATCAGCAGT.............................................................................................................................................................................1721.00200000200000
................................................................................................................................ACTGGCCTACTAAGTCCCAACT.....................................................................................................................2221.00220000000000
.....................................................................GGTTGGGATTTTTTAGATCAT.................................................................................................................................................................................2121.00200000200000
.....................................................................GGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2321.00200000200000
droEre2
TTA---------------------------------------ATCGGAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCA-TA-TTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTT-----GAATATTA---AAAAAA-----AA------A-----------ATAGTAGTGAACTTAAAAAATATTTGATACATTTCTTCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................TTGGGATTTTTTAGATCAGC................................................................................................................................................................................2013907.0039072040301534870
.......................................................................TTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................2213613.00361341083107826630
........................................................................TGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2211044.001044601710358320
.....................................................................GGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................221960.009602048029080
.......................................................................TTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................211844.00844302410135870
........................................................................TGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................211844.00844130193096290
.......................................................................TTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................231382.0038210480103230
.....................................................................GGTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................231274.002741030042390
...............................................................................................................................TACTGGCCTACTAAGTCCCA........................................................................................................................201201.0020110016001750
...............................................................................................................................TACTGGCCTACTAAGTCCCAAC......................................................................................................................221181.0018151324011020
.....................................................................GGTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................241149.001491015021310
...............................................................................................................................TACTGGCCTACTAAGTCCCAA.......................................................................................................................211122.001221802000840
.....................................................................GGTTGGGATTTTTTAGATCAG.................................................................................................................................................................................211108.00108001302930
.......................................................................TTGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................23187.0087001101750
........................................................................TGGGATTTTTTAGATCAGC................................................................................................................................................................................19177.007700701690
.......................................................................TTGGGATTTTTTAGATCAG.................................................................................................................................................................................19176.0076001901560
......................................................................GTTGGGATTTTTTAGATCAGC................................................................................................................................................................................21163.006300900540
........................................................................TGGGATTTTTTAGATCAGCA...............................................................................................................................................................................20133.003310801230
.......................................................................TTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................22133.0033001300200
................................................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................................................................................................22131.0031130001170
.......................................................................TTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................22131.003100401260
...............................................................................................................................TACTGGCCTACTAAGTCCCAACT.....................................................................................................................23123.002330100190
.......................................................................TTGGGATTTTTTAGATCA..................................................................................................................................................................................18122.002200100210
......................................................................GTTGGGATTTTTTAGATCAGCAG..............................................................................................................................................................................23120.002000200180
........................................................................TGGGATTTTTTAGATCAGCAGA.............................................................................................................................................................................22116.001600201130
.....................................................................GGTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................24115.001500000150
.......................................................................TTGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................24114.001400301100
...............................................................................................................................TACTGGCCTACTAAGTCCC.........................................................................................................................19114.001420100110
......................................................................GTTGGGATTTTTTAGATCAGCA...............................................................................................................................................................................22114.001400300110
................................................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................................................................................................23113.00136010060
.......................................................................TTGGGATTTTTTAGATCAGA................................................................................................................................................................................20112.001200000120
.....................................................................GGTTGGGATTTTTTAGATCA..................................................................................................................................................................................20112.00120030090
........................................................................TGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................21110.00100020080
................................................................................................................................ACTGGCCTACTAAGTCCCAAC......................................................................................................................2119.0098000010
.....................................................................GGTTGGGATTTTTTAGATCAGA................................................................................................................................................................................2219.0090000090
...............................................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................................................................................................2318.0080000080
........................................................................TGGGATTTTTTAGATCAGCAGTT............................................................................................................................................................................2318.0080010070
.....................................................................GGTTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2317.0070000070
...............................................................................................................................TACTGGCCTACTAAGTCC..........................................................................................................................1817.0071000060
.......................................................................TTGGGATTTTTTAGATCAGT................................................................................................................................................................................2016.0060010050
.....................................................................GGTTGGGATTTTTTAGATCAGCAT..............................................................................................................................................................................2415.0050010040
......................................................................GTTGGGATTTTTTAGATCAG.................................................................................................................................................................................2015.0050000050
...............................................................................................................................TACTGGCCTACTAAGTCCCAAA......................................................................................................................2215.0050010040
..................................................................................................................................TGGCCTACTAAGTCCCAACATT...................................................................................................................2214.0042000020
....................................................................TGGTTGGGATTTTTTAGATCAGC................................................................................................................................................................................2314.0040010030
.....................................................................GGTTGGGATTTTTTAGATCAGCAGT.............................................................................................................................................................................2514.0040010030
.......................................................................TTGGGATTTTTTAGATCAGCC...............................................................................................................................................................................2114.0040010030
.....................................................................GGTTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2314.0040010030
.....................................................................GGTTGGGATTTTTTAGATC...................................................................................................................................................................................1914.0040000040
.......................................................................TTGGGATTTTTTAGATCAGCT...............................................................................................................................................................................2114.0040010030
.....................................................................GGTTGGGATTTTTTAGATCAGCG...............................................................................................................................................................................2313.0030000030
.......................................................................TTGGGATTTTTTAGATCAGCAC..............................................................................................................................................................................2213.0030000030
........................................................................TGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2213.0030010020
...............................................................................................................................TACTGGCCTACTAAGTCCCAT.......................................................................................................................2112.0020000020
.....................................................................GGTTGGGATTTTTTAGATCAGT................................................................................................................................................................................2212.0020000020
........................................................................TGGGATTTTTTAGATCAG.................................................................................................................................................................................1812.0020000020
.......................................................................TTGGGATTTTTTAGATCAGCAGTA............................................................................................................................................................................2412.0020000020
......................................................................GTTGGGATTTTTTAGATCAGCAA..............................................................................................................................................................................2312.0020000020
................................................................................................................................ACTGGCCTACTAAGTCCCA........................................................................................................................1912.0020000020
.......................................................................TTGGGATTTTTTAGATCAGCAGTTT...........................................................................................................................................................................2512.0020000020
.......................................................................TTGGGATTTTTTAGATCAGCAGC.............................................................................................................................................................................2312.0020000020
..............................................................................................TATTGCTACATAGCCA-TA-TTT......................................................................................................................................................2112.0020000020
.......................................................................TTGGGATTTTTTAGATCAGCATA.............................................................................................................................................................................2312.0020000020
.....................................................................GGTTGGGATTTTTTAGATCAGCTT..............................................................................................................................................................................2411.0010000010
........................................................................TGGGATTTTTTAGATCAGCAAA.............................................................................................................................................................................2211.0010000010
................................................................................................................................ACTGGCCTACTAAGTCCCAAT......................................................................................................................2111.0010000010
.......................................................................TTGGGATTTTTTAGATCAGCACA.............................................................................................................................................................................2311.0010000010
..............................................................................................TATTGCTACATAGCCA-TA-T........................................................................................................................................................1911.0010000010
..............................................................................................................................CTACTGGCCTACTAAGTCCCA........................................................................................................................2111.0010010000
..........................................................................GGATTTTTTAGATCAGCAG..............................................................................................................................................................................1911.0010000010

Generated: 10/20/2015 at 11:21 PM