dwi_1191

Name	Class	Family	Strand
Homo3	DNA	hAT-Ac	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCTGGAAAAACATCGATGTTTGAGACCATCGATGTTTCGATGTTTGCGCGGTATTTTTAAAATCATTCATTTATTTCGCGAATCTTAATAGAATAAAGAAATATAGCAACAATAGTTAAAGCGATAAAAACGAAGCGACTAAGTAAGATTTGGGGTTATATTTTAATTATAAGCTAAAATTTAGTAAATAACAATTCATTCATTTGGTAAATTTTTTTGTAACTAACTAAAATTAAAAGAAATACGTTCTT ************************************************************************.....((..((((..........................((((....((.......))....))))...)))).))***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body
............................................................................................................................TAAAAACGAAGCGACTAAGTAAGATT.....................................................................................................	26	0	1	2.00	2	0	2	0
...........................................................................................................................................TAAGTAAGATTTGGGGTTATATTT........................................................................................	24	0	1	2.00	2	2	0	0
..................TTTGAGACCATCGATGTTTCGATGT................................................................................................................................................................................................................	25	0	1	2.00	2	0	2	0
.......................................................................................................................................................................................................TCATTTGGTAAATTTTTTTGTAACT...........................	25	0	1	2.00	2	1	1	0
..................................................................................................................................CGAAGAGACTAAGTAAGATTTGGGGT...............................................................................................	26	1	1	1.00	1	0	1	0
.......................................................................................................................................................................................................TCATTTGGTAAATTTTTTTGTAACTAA.........................	27	0	1	1.00	1	1	0	0
..........................................................................TTCGCGAATCTTAATAGAATAAAGAAATA....................................................................................................................................................	29	0	1	1.00	1	1	0	0
.......................................................................................................................................................................................................TCATTTGGTAAATTTTTTTGTAAC............................	24	0	1	1.00	1	0	1	0
...................................................................................................................................................................................................TCATTCATTTGGTAAATTTTTTTGTAAC............................	28	0	1	1.00	1	1	0	0
...................TTGAGACCATCGATGTTTCGATGTT...............................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0
..TGGAAAAACATCGATGTTTGAGA..................................................................................................................................................................................................................................	23	0	2	0.50	1	1	0	0
..TGGAAAAACATCGATGTTTGAGACCATTA............................................................................................................................................................................................................................	29	2	2	0.50	1	1	0	0
..........................................................AAAATCATTCATTTATTTCGCGAATCT......................................................................................................................................................................	27	0	3	0.33	1	1	0	0
.......................................................................................................TAGCAACAATAGTTAAAGCGATAAAAA.........................................................................................................................	27	0	3	0.33	1	1	0	0
......................................................TTTTAAAATCATTCATTTATTTCGCGAA.........................................................................................................................................................................	28	0	5	0.20	1	1	0	0
...............................................................................................................................................TAAGATTTGGGGTTATATTTTAAT....................................................................................	24	0	12	0.17	2	0	2	0
...............................................................................................................................................TAAGATTTGGGGTTATATTTTAATT...................................................................................	25	0	12	0.17	2	1	1	0
.....................................................................................................................................................................................TAGTAAATAACAATTCATTCATTTGG............................................	26	0	14	0.14	2	2	0	0
.......................................................TTTAAAATCATTCATTTATTTCGCG...........................................................................................................................................................................	25	0	15	0.13	2	2	0	0
...............................................................................................................................................TAAGATTTGGGGTTATATTTTAATTA..................................................................................	26	0	12	0.08	1	1	0	0
......................................................................................................................................................TGGGGTTATATTTTAATTATAAGCT............................................................................	25	0	14	0.07	1	0	1	0
................................................................................................................................................AAGATTTGGGGTTATATTTTAAT....................................................................................	23	0	14	0.07	1	1	0	0
............................TCGATGTTTCGATGTTTGCGCGGT.......................................................................................................................................................................................................	24	0	15	0.07	1	1	0	0
............................TCGATGTTTCGATGTTTGCGC..........................................................................................................................................................................................................	21	0	15	0.07	1	1	0	0
...................................TTCGATGTTTGCGCGGTATTTTTAAAAT............................................................................................................................................................................................	28	0	15	0.07	1	0	0	1
...................................TTCGATGTTTGCGCGGTATTTTTA................................................................................................................................................................................................	24	0	16	0.06	1	0	1	0

CGACCTTTTTGTAGCTACAAACTCTGGTAGCTACAAAGCTACAAACGCGCCATAAAAATTTTAGTAAGTAAATAAAGCGCTTAGAATTATCTTATTTCTTTATATCGTTGTTATCAATTTCGCTATTTTTGCTTCGCTGATTCATTCTAAACCCCAATATAAAATTAATATTCGATTTTAAATCATTTATTGTTAAGTAAGTAAACCATTTAAAAAAACATTGATTGATTTTAATTTTCTTTATGCAAGAA ***************************************************************************************************.....((..((((..........................((((....((.......))....))))...)))).))************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo
...............................................................................................................................TTTGCTTCGCTGATTCATTCTAAACC..................................................................................................	26	0	1	2.00	2	2	0
.................................................................................................................................TGCTTCGCTGATTCATTCTAAACC..................................................................................................	24	0	1	1.00	1	1	0
.............GCTACAAACTCTGGTAGCTACAAAGCT...................................................................................................................................................................................................................	27	0	1	1.00	1	1	0
......................................................................................................................TTCGCTATTTTTGCTTCGCTGATTCATT.........................................................................................................	28	0	1	1.00	1	0	1
......................................................................................................................TTCGCTATTTTTGCTTCGCTGATTCAT..........................................................................................................	27	0	1	1.00	1	0	1
..........................................................................................................................................GATTCATTCTAAACCCCAATATAAAAT......................................................................................	27	0	1	1.00	1	1	0
.....TTTTTGTAGCTACAAACTCTGGT...............................................................................................................................................................................................................................	23	0	2	0.50	1	1	0
.GACCCTTTTGTAGCTATCAACTCTG.................................................................................................................................................................................................................................	25	3	2	0.50	1	1	0
......................................................................................................................................................................................TCATTTATTGTTAAGTAAGTAAACCAT..........................................	27	0	14	0.14	2	2	0
...............................TACAAAGCTACAAACGCGCCATAAAAAT................................................................................................................................................................................................	28	0	15	0.13	2	2	0
.......................................................................................................................................................................................CATTTATTGTTAAGTAAGTAAACCAT..........................................	26	0	14	0.07	1	1	0
.....................................................................................................................................................................TAATATTCGATTTTAAATCATTTAT.............................................................	25	0	14	0.07	1	0	1
...........................................................................................................................................................................................TATTGTTAAGTAAGTAAACCA...........................................	21	0	15	0.07	1	1	0
............................AGCTACAAAGCTACAAACGCGCCATAA....................................................................................................................................................................................................	27	0	15	0.07	1	1	0
................................ACAAAGCTACAAACGCGCCATAAAAATT...............................................................................................................................................................................................	28	0	15	0.07	1	1	0
.........................................CAAACGCGCCATAAAAATTTTAGTAAG.......................................................................................................................................................................................	27	0	18	0.06	1	0	1
........................................................................................................................................................................................................................................AGTTGTCTTTATGCAAGA.	18	2	20	0.05	1	1	0

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004519:68061-68311 -	dwi_1191	GCTGGAAAAACATCGATGTTTGAGACCATCGATGTT--TCG----------------------------------ATGTTTG----------------------------------------------------C-GCGGTA-----------TTTTTAAA------------------------------ATCATTCATTTATTTC------------------------GCGAATCTTAATAGAATAAAGAAATATAGCAACAATAGTTAAAGCGATAAAAACGAAGCGACTAAGTAAGATTTGGGGTTATATTTTAATTATAAGCTAAAATTTAGTAAATAACAATTCATTCATTT--GGTAAATTTTTTTGTAACTAAC-TAAAATTAAAAGAAATACGTTCTT
droMoj3	scaffold_6473:15809254-15809375 -		GCTGGAATATCATCGATGTTTGCCACCATCGATGTT-TTCG----------------------------------ATATTTG----------------------------------------------------C-GCGAAA-----------TATTTAAA------------------------------ATTATTGTTTTCTGTCAAATTGTTTATATTCATTCAGGATACAGAGCTTAATAAAATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	4_group4:1563652-1563720 -		GCTGGAGAAACATCGGTGTTAGCGACCATCGATG---------------------------------AAACATCGATGTTTC----------------------------------------------------C-GATGTT-----------TTTTTAAT------------------------------ATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_10:568241-568309 -		GCTGGAGAAACATCGGTGTTAGCGACCATCGATG---------------------------------AAACATCGATGTTTC----------------------------------------------------C-GATGTT-----------TTTTTAAT------------------------------ATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396390:11710-11924 +		GGTGCAAAAACATCGATGTATGGAGACATCGATGTTTTTCGATGTTTTTCCCAA--AACATCGA-TGAAACATCGATGTTTTTAAAAATTAAAAAAATATTTTTTAAATAAGTTAAATAGA-TAAATAG-ACATACGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATAAAATTTTA-----AAATTT----AAAATTAAAATTTTTAAATTTTTAAAATTTTTA-------AATTTAAAATTT-AAAATTTACGTACCT
droFic1	scf7180000453928:246594-246815 -		GCTGGAAAAACATCGATGTTCACCTACATCGATGTT--TCGATGTTTTTCAGAA--AA--------AAAACATCGATGTATC----------------------------------------------------GCGAT--AGCGATAGCGTGTACTTAAAAAATTTTTTTTAGTAATATCAAATATTAAAATAATATATTTATTTA------------------------ATTTAAATAAA--------------------------------------------------------------------------------------TAAAATAAAATAAAAAATAATATATTTATTTAATTTAAATGAATA-------AATTAAATGTGA-AAA--AGTTGTTCTT
droRho1	scf7180000775549:11049-11234 +		GGTGCAGAAACATCGATGTTCGTGCCCATCGATGTT-TTCGATGTTTT-CAAAAAAAATATCGAGTTAAACATCGATGTTTTAAAAAAAAAAAAGA-------------------AA-AGGCAAAACAGTACAAACGAT--AACAATGAGGTATATTTGAG------------------------------ATCAT---------TTAAAGTGTCTATTTTTGTTGAGGAT-------------------------------------------------------------------------------------------------AAGAAGTTGATCAACAAC--------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

GCTGGAAAAACATCGATGTTTGAGACCATCGATGTT--TCG----------------------------------ATGTTTG----------------------------------------------------C-GCGGTA-----------TTTTTAAA------------------------------ATCATTCATTTATTTC------------------------GCGAATCTTAATAGAATAAAGAAATATAGCAACAATAGTTAAAGCGATAAAAACGAAGCGACTAAGTAAGATTTGGGGTTATATTTTAATTATAAGCTAAAATTTAGTAAATAACAATTCATTCATTT--GGTAAATTTTTTTGTAACTAAC-TAAAATTAAAAGAAATACGTTCTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................TAAAAACGAAGCGACTAAGTAAGATT........................................................................................................	26	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................TAAGTAAGATTTGGGGTTATATTT...........................................................................................	24	1	2.00	2	0	2	0	0	0
..................TTTGAGACCATCGATGTT--TCG----------------------------------ATGT.........................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................TCATTT--GGTAAATTTTTTTGTAACT............................	25	1	2.00	2	0	1	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TCATTT--GGTAAATTTTTTTGTAACTAA..........................	27	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................TTC------------------------GCGAATCTTAATAGAATAAAGAAATA.......................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCATTT--GGTAAATTTTTTTGTAAC.............................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................TCATTCATTT--GGTAAATTTTTTTGTAAC.............................	28	1	1.00	1	0	1	0	0	0
...................TTGAGACCATCGATGTT--TCG----------------------------------ATGTT........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..TGGAAAAACATCGATGTTTGAGA...............................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0
..TGGAAAAACATCGATGTTTGAGACCATTA.........................................................................................................................................................................................................................................................................................................................................................................................	29	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................AAA------------------------------ATCATTCATTTATTTC------------------------GCGAATCT.........................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................TAGCAACAATAGTTAAAGCGATAAAAA............................................................................................................................	27	3	0.33	1	0	1	0	0	0
..........................................................................................................................................................TTTTAAA------------------------------ATCATTCATTTATTTC------------------------GCGAA............................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................TAAGATTTGGGGTTATATTTTAAT.......................................................................................	24	12	0.17	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................TAAGATTTGGGGTTATATTTTAATT......................................................................................	25	12	0.17	2	0	1	0	1	0
...............................................................................................................................................................................................................................................................................................................................................TAGTAAATAACAATTCATTCATTT--GG.............................................	26	14	0.14	2	0	2	0	0	0
...........................................................................................................................................................TTTAAA------------------------------ATCATTCATTTATTTC------------------------GCG..............................................................................................................................................................................	25	15	0.13	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................TAAGATTTGGGGTTATATTTTAATTA.....................................................................................	26	12	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................TGGGGTTATATTTTAATTATAAGCT...............................................................................	25	14	0.07	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................AAGATTTGGGGTTATATTTTAAT.......................................................................................	23	14	0.07	1	0	1	0	0	0
............................TCGATGTT--TCG----------------------------------ATGTTTG----------------------------------------------------C-GCGGT...........................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0
............................TCGATGTT--TCG----------------------------------ATGTTTG----------------------------------------------------C-GC..............................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0
...................................T--TCG----------------------------------ATGTTTG----------------------------------------------------C-GCGGTA-----------TTTTTAAA------------------------------AT.......................................................................................................................................................................................................................	28	15	0.07	1	0	0	1	0	0
...................................T--TCG----------------------------------ATGTTTG----------------------------------------------------C-GCGGTA-----------TTTTTA.........................................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	1	0

droMoj3

GCTGGAATATCATCGATGTTTGCCACCATCGATGTT-TTCG----------------------------------ATATTTG----------------------------------------------------C-GCGAAA-----------TATTTAAA------------------------------ATTATTGTTTTCTGTCAAATTGTTTATATTCATTCAGGATACAGAGCTTAATAAAATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..TGGAATATCATCGATGTTTGCCACCATC..........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................TTCTGTCAAATTGTTTATATTCAT........................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0

dp5

GCTGGAGAAACATCGGTGTTAGCGACCATCGATG---------------------------------AAACATCGATGTTTC----------------------------------------------------C-GATGTT-----------TTTTTAAT------------------------------ATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GCTGGAGAAACATCGGTGTTAGCGACCATCGATG---------------------------------AAACATCGATGTTTC----------------------------------------------------C-GATGTT-----------TTTTTAAT------------------------------ATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droBip1

GGTGCAAAAACATCGATGTATGGAGACATCGATGTTTTTCGATGTTTTTCCCAA--AACATCGA-TGAAACATCGATGTTTTTAAAAATTAAAAAAATATTTTTTAAATAAGTTAAATAGA-TAAATAG-ACATACGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATAAAATTTTA-----AAATTT----AAAATTAAAATTTTTAAATTTTTAAAATTTTTA-------AATTTAAAATTT-AAAATTTACGTACCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTGGAAAAACATCGATGTTCACCTACATCGATGTT--TCGATGTTTTTCAGAA--AA--------AAAACATCGATGTATC----------------------------------------------------GCGAT--AGCGATAGCGTGTACTTAAAAAATTTTTTTTAGTAATATCAAATATTAAAATAATATATTTATTTA------------------------ATTTAAATAAA--------------------------------------------------------------------------------------TAAAATAAAATAAAAAATAATATATTTATTTAATTTAAATGAATA-------AATTAAATGTGA-AAA--AGTTGTTCTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGTGCAGAAACATCGATGTTCGTGCCCATCGATGTT-TTCGATGTTTT-CAAAAAAAATATCGAGTTAAACATCGATGTTTTAAAAAAAAAAAAGA-------------------AA-AGGCAAAACAGTACAAACGAT--AACAATGAGGTATATTTGAG------------------------------ATCAT---------TTAAAGTGTCTATTTTTGTTGAGGAT-------------------------------------------------------------------------------------------------AAGAAGTTGATCAACAAC--------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

-3.8	-3.8	-3.7	-3.7

dwi_1191

scf2_1100000004519:68111-68261 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads