ID:

dwi_1189

 Coordinate:

scf2_1100000004517:15993-16143 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.5 -24.5 -24.5

Flybase annnotation

exon [dwil_GLEANR_19411:2]; CDS [Dwil\GK18764-cds]; intron [Dwil\GK18764-in]

Repeatable elements

NameClassFamilyStrand
Howilli4DNAhAT-hobo+
mature
  1. scf2_1100000001219:2052-2076 +
  2. scf2_1100000006232:695-719 -
  3. dwi_1189  scf2_1100000004517:16104-16128 -
  4. scf2_1100000004585:364893-364917 +
  5. scf2_1100000004590:3425143-3425167 -
  6. scf2_1100000004954:2291478-2291502 +
  7. scf2_1100000004958:2602847-2602871 +
  8. scf2_1100000007631:1395-1419 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGAGAAGCAATATACATTCACACTCACACACATTCACTCCAGTGTTAGCAAGCACTCACTCAATTCAATTCAATTCGAGTCCATTCATTTTTTTATATGTATTGAGTAAAGCCGAGCAGCTCTCTAATATATATATATAAATGGAATTGCTGGCATAAACCCTTCTGCTATTGATTTCGCACTTTATCTTGGTATTCCAGATGAACTTCTACTCATCCGTGAACTGCATGACCTCGACCTACCACTTCTT
**************************************************........((((((((......)))).))))...(((((((...(((((((((((((...(((......)))))).))))))))))...)))))))((((.(((((.((....)).))))).)))).............((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
...........................................TGTTAGCAAGCACTCACTCAATTCAAT..................................................................................................................................................................................... 27 0 9 3.00 27 22 5 0
...........TATACATTCACACTCACACACATTCAC..................................................................................................................................................................................................................... 27 0 10 2.50 25 25 0 0
..................TCACACTCACACACATTCACTCCAG................................................................................................................................................................................................................ 25 0 9 1.44 13 13 0 0
.................................................................TCAATTCAATTCGAGTCCATTCATT................................................................................................................................................................. 25 0 8 1.13 9 6 3 0
.....................................................................................................................................................................................................................TCATCCGTGAACTGCATGACCTCGACC........... 27 0 1 1.00 1 1 0 0
............................................................TCAATTCAATTCAATTCGAGTCCAT...................................................................................................................................................................... 25 0 9 0.89 8 6 2 0
.................................................................TCAATTCAATTCGAGTCCATTCATTT................................................................................................................................................................ 26 0 8 0.63 5 4 1 0
..................................TCACTCCAGTGTTAGCAAGCACTCACT.............................................................................................................................................................................................. 27 0 7 0.57 4 4 0 0
...........................................TGTTAGCAAGCACTCACTCAATTCA....................................................................................................................................................................................... 25 0 9 0.56 5 3 2 0
.............TACATTCACACTCACACACATTCAC..................................................................................................................................................................................................................... 25 0 10 0.50 5 5 0 0
......................................TCCAGTGTTAGCAAGCACTCACTCAAT.......................................................................................................................................................................................... 27 0 8 0.50 4 4 0 0
.................TTCACACTCACACACATTCACTCCAG................................................................................................................................................................................................................ 26 0 9 0.44 4 4 0 0
............................................GTTAGCAAGCACTCACTCAATTCAAT..................................................................................................................................................................................... 26 0 9 0.44 4 4 0 0
.............................CACATTCACTCCAGTGTTAGCAAGCACT.................................................................................................................................................................................................. 28 0 7 0.43 3 3 0 0
...........TATACATTCACACTCACACACATTCA...................................................................................................................................................................................................................... 26 0 10 0.40 4 4 0 0
..................................................................CAATTCAATTCGAGTCCATTCATT................................................................................................................................................................. 24 0 8 0.38 3 3 0 0
...................CACACTCACACACATTCACTCCAGTGT............................................................................................................................................................................................................. 27 0 8 0.38 3 2 1 0
.................................................................TCAATTCAATTCGAGTCCATTCAT.................................................................................................................................................................. 24 0 9 0.33 3 3 0 0
............................................................TCAATTCAATTCAATTCGAGTCCATT..................................................................................................................................................................... 26 0 9 0.33 3 3 0 0
....................................................................................................................................................................................................................................ATGACCTTGACCTACCTC..... 18 2 3 0.33 1 1 0 0
..............................................TAGCAAGCACTCACTCAATTCAATTCAAT................................................................................................................................................................................ 29 0 9 0.33 3 3 0 0
.............TACATTCACACTCACACACATTCACTC................................................................................................................................................................................................................... 27 0 9 0.33 3 3 0 0
...........TATACATTCACACTCACACACATTC....................................................................................................................................................................................................................... 25 0 10 0.30 3 3 0 0
...........................CACACATTCACTCCAGTGTTAGCAAGCAC................................................................................................................................................................................................... 29 0 7 0.29 2 0 0 2
..................................TCACTCCAGTGTTAGCAAGCACTCA................................................................................................................................................................................................ 25 0 7 0.29 2 2 0 0
.................................TTCACTCCAGTGTTAGCAAGCACTCACT.............................................................................................................................................................................................. 28 0 7 0.29 2 2 0 0
.................................................................TCAATTCAATTCGAGTCCATTCATTTG............................................................................................................................................................... 27 1 8 0.25 2 2 0 0
.........................CACACACATTCACTCCAGTGTTAGCAAG...................................................................................................................................................................................................... 28 0 8 0.25 2 2 0 0
..................TCACACTCACACACATTCACTCCAGTGT............................................................................................................................................................................................................. 28 0 8 0.25 2 2 0 0
........................TCACACACATTCACTCCAGTGTTAGC......................................................................................................................................................................................................... 26 0 8 0.25 2 2 0 0
.....................................................................TTCAATTCGAGTCCATTCATTTGTGTA........................................................................................................................................................... 27 2 8 0.25 2 2 0 0
...................CACACTCACACACATTCACTCCAG................................................................................................................................................................................................................ 24 0 9 0.22 2 2 0 0
.............................................................CAATTCAATTCAATTCGAGTCCAT...................................................................................................................................................................... 24 0 9 0.22 2 1 1 0
..............................................TAGCAAGCACTCACTCAATTCAAT..................................................................................................................................................................................... 24 0 9 0.22 2 1 1 0
................................................................TTCAATTCAATTCGAGTCCATTCAT.................................................................................................................................................................. 25 0 9 0.22 2 0 2 0
...........................................TGTTAGCAAGCACTCACTCAATTCAA...................................................................................................................................................................................... 26 0 9 0.22 2 1 1 0
.............................................TTAGCAAGCACTCACTCAATTCAAT..................................................................................................................................................................................... 25 0 9 0.22 2 2 0 0
............ATACATTCACACTCACACACATTCA...................................................................................................................................................................................................................... 25 0 10 0.20 2 2 0 0
......AGCAATATACATTCACACTCACACACA.......................................................................................................................................................................................................................... 27 0 10 0.20 2 2 0 0
..............................ACATTCACTCCAGTGTTAGCAAGCACT.................................................................................................................................................................................................. 27 0 7 0.14 1 1 0 0
......................................................................TCAATTCGAGTCCATTCATTTTTTTATA......................................................................................................................................................... 28 0 7 0.14 1 1 0 0
..................................TCACTCCAGTGTTAGCAAGCACTCAC............................................................................................................................................................................................... 26 0 7 0.14 1 1 0 0
......................................................................TCAATTCGAGTCCATTCATTTTTTTA........................................................................................................................................................... 26 0 7 0.14 1 1 0 0
.....................................................................TTCAATTCGAGTCCATTCATTTTTTTA........................................................................................................................................................... 27 0 7 0.14 1 1 0 0
.............................CACATTCACTCCAGTGTTAGCAAGCAC................................................................................................................................................................................................... 27 0 7 0.14 1 1 0 0
............................................................................CGAGTCCATTCATTTTTTTATATGTAT.................................................................................................................................................... 27 0 7 0.14 1 1 0 0
.......................................................................CAATTCGAGTCCATTCATTTTTT............................................................................................................................................................. 23 0 7 0.14 1 1 0 0
.....................................................................TTCAATTCGAGTCCATTCATTTTTTTATA......................................................................................................................................................... 29 0 7 0.14 1 1 0 0
..........................................................................TTCGAGTCCATTCATTTTTTTATAT........................................................................................................................................................ 25 0 7 0.14 1 1 0 0
......................................................................TCAATTCGAGTCCATTCATTTTTT............................................................................................................................................................. 24 0 7 0.14 1 1 0 0
...........................................................................TCGAGTCCATTCATTTTTTTATATGTAT.................................................................................................................................................... 28 0 7 0.14 1 1 0 0
......................................................................TCAATTCGAGTCCATTCATTTTTTTAT.......................................................................................................................................................... 27 0 7 0.14 1 1 0 0
.................................TTCACTCCAGTGTTAGCAAGCACTCAC............................................................................................................................................................................................... 27 0 7 0.14 1 1 0 0
..........................................GTGTTAGCAAGCACTCACTCAATTCA....................................................................................................................................................................................... 26 0 8 0.13 1 1 0 0
......................................TCCAGTGTTAGCAAGCAC................................................................................................................................................................................................... 18 0 8 0.13 1 1 0 0
........................TCACACACATTCACTCCAGTGTTAGCA........................................................................................................................................................................................................ 27 0 8 0.13 1 1 0 0
......................................................................TCAATTCGAGTCCATTCATTTGTG............................................................................................................................................................. 24 2 8 0.13 1 1 0 0
....................................TCTCCAGTGTTAGCAAGCACTCACTCA............................................................................................................................................................................................ 27 1 8 0.13 1 1 0 0
...........................CACACATTCACTCCAGTGTTAGCAAG...................................................................................................................................................................................................... 26 0 8 0.13 1 1 0 0
................................................................TTCAATTCAATACGAGTCCATTCATT................................................................................................................................................................. 26 1 8 0.13 1 0 1 0
................................................................TTCAATTCAATTCGAGTCCATTCATT................................................................................................................................................................. 26 0 8 0.13 1 1 0 0
.......................................CCAGTGTTAGCAAGCACTCACTCAAT.......................................................................................................................................................................................... 26 0 8 0.13 1 1 0 0
.......................................................................CAATTCGAGTCCATTCATT................................................................................................................................................................. 19 0 8 0.13 1 1 0 0
...................................CACTCCAGTGTTAGCAAGCACTCACT.............................................................................................................................................................................................. 26 0 8 0.13 1 1 0 0
.....................................................................TTCAATTCGAGTCCATTCATT................................................................................................................................................................. 21 0 8 0.13 1 1 0 0
........................TCACACACATTCACTCCAGTGT............................................................................................................................................................................................................. 22 0 8 0.13 1 1 0 0
......................................................................TCAATTCGAGTCCATTCATTTGTGT............................................................................................................................................................ 25 2 8 0.13 1 1 0 0
..........................ACACACATTCACTCCAGTGTTAGCAA....................................................................................................................................................................................................... 26 0 8 0.13 1 1 0 0
......................................TCCAGTGTTAGCAAGCACTCACTCAA........................................................................................................................................................................................... 26 0 8 0.13 1 1 0 0
...................................CACTCCAGTGTTAGCAAGCACTCACTCAA........................................................................................................................................................................................... 29 0 8 0.13 1 1 0 0
...........................................................................TCGAGTCCATTCATCTTTTTATATGTA..................................................................................................................................................... 27 1 8 0.13 1 0 1 0
..............................ACATTCACTCCAGTGTTAGCAAGCA.................................................................................................................................................................................................... 25 0 8 0.13 1 1 0 0
..................................................................CAATTCAATTCGAGTCCATTCATTT................................................................................................................................................................ 25 0 8 0.13 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAATTCAATTC................................................................................................................................................................................... 29 0 9 0.11 1 1 0 0
...........................................................................TCGAGTCCATTCATTTGTGTAT.......................................................................................................................................................... 22 2 9 0.11 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAATTCAAA..................................................................................................................................................................................... 27 1 9 0.11 1 1 0 0
............................................................TCAATTCAATTCAATTCGAGTCCC....................................................................................................................................................................... 24 1 9 0.11 1 1 0 0
............................................................TCAATTCAACTCAATTCGAGTCCAT...................................................................................................................................................................... 25 1 9 0.11 1 0 1 0
..................TCACACTCACACACATTCACTCCAGTG.............................................................................................................................................................................................................. 27 0 9 0.11 1 1 0 0
.............................................TTAGCAAGCACTCACTCAATTCAA...................................................................................................................................................................................... 24 0 9 0.11 1 1 0 0
.................................................................TCAATTCAATTCGAGTCCATTCA................................................................................................................................................................... 23 0 9 0.11 1 1 0 0
............................................................TCAATTCAATTCAATTCGACTCCATT..................................................................................................................................................................... 26 1 9 0.11 1 0 1 0
...................CACACTCACACACATTCACTCCAGTG.............................................................................................................................................................................................................. 26 0 9 0.11 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAATTCAATT.................................................................................................................................................................................... 28 0 9 0.11 1 1 0 0
..................TCACACTCACACACATTCACTCCAGT............................................................................................................................................................................................................... 26 0 9 0.11 1 1 0 0
...........TATACATTCACACTCACACACATTCACTC................................................................................................................................................................................................................... 29 0 9 0.11 1 1 0 0
.TGAGAAGCAATATACATTCACACTCACA.............................................................................................................................................................................................................................. 28 0 9 0.11 1 1 0 0
..........................................CTGTTAGCAAGCACTCACTCAATTCAAT..................................................................................................................................................................................... 28 1 9 0.11 1 1 0 0
............................................GTTAGCAAGCACTCACTCAATTCAATT.................................................................................................................................................................................... 27 0 9 0.11 1 1 0 0
.............................................................CAATTCAATTCAATTCGAGTCCATTC.................................................................................................................................................................... 26 0 9 0.11 1 0 1 0
.............................................TTAGCAAGCACTCACTCAATTCAATT.................................................................................................................................................................................... 26 0 9 0.11 1 0 1 0
................................................................TTCAATTCAATTCGAGTCCATTCA................................................................................................................................................................... 24 0 9 0.11 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAATTCAATA.................................................................................................................................................................................... 28 1 9 0.11 1 1 0 0
...........................................................GTCAATTCAATTCAATTCGAGTCCAT...................................................................................................................................................................... 26 1 9 0.11 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAATTC........................................................................................................................................................................................ 24 0 9 0.11 1 1 0 0
.....................CACTCACACACATTCACTCCAG................................................................................................................................................................................................................ 22 0 9 0.11 1 1 0 0
.................................................CAAGCACTCACTCAATTCA....................................................................................................................................................................................... 19 0 9 0.11 1 1 0 0
...........TATACATTCACACTCACACACATTCACA.................................................................................................................................................................................................................... 28 1 10 0.10 1 1 0 0
............ATACATTCACACTCACACACATTCAC..................................................................................................................................................................................................................... 26 0 10 0.10 1 1 0 0
............ATACATTCACACTCACACACATT........................................................................................................................................................................................................................ 23 0 10 0.10 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAAT.......................................................................................................................................................................................... 22 0 10 0.10 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAATA......................................................................................................................................................................................... 23 1 10 0.10 1 1 0 0
................ATTCACACTCACACACATTCAC..................................................................................................................................................................................................................... 22 0 10 0.10 1 1 0 0
.............TACATTCACACTCACACACATTCA...................................................................................................................................................................................................................... 24 0 10 0.10 1 1 0 0
................ATTCACACTCACACACATTCA...................................................................................................................................................................................................................... 21 0 10 0.10 1 1 0 0
...............CATTCACACTCACACACATTCAC..................................................................................................................................................................................................................... 23 0 10 0.10 1 1 0 0
...........................................TGTTAGCAAGCACTCACTCAA........................................................................................................................................................................................... 21 0 10 0.10 1 1 0 0

Anti-sense strand reads

TACTCTTCGTTATATGTAAGTGTGAGTGTGTGTAAGTGAGGTCACAATCGTTCGTGAGTGAGTTAAGTTAAGTTAAGCTCAGGTAAGTAAAAAAATATACATAACTCATTTCGGCTCGTCGAGAGATTATATATATATATTTACCTTAACGACCGTATTTGGGAAGACGATAACTAAAGCGTGAAATAGAACCATAAGGTCTACTTGAAGATGAGTAGGCACTTGACGTACTGGAGCTGGATGGTGAAGAA
**************************************************........((((((((......)))).))))...(((((((...(((((((((((((...(((......)))))).))))))))))...)))))))((((.(((((.((....)).))))).)))).............((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
..........................................................................................................CATTCCGGCTCGTCGTGAGAA............................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0
....................................................CGTGAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 23 0 9 0.56 5 4 0 0 0 1
...................................................TCGTGAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 24 0 9 0.56 5 4 0 1 0 0
.....................................................GTGAGTGAGTTAAGTTAAGTTAAGCT............................................................................................................................................................................ 26 0 9 0.44 4 0 3 1 0 0
.....................................................GTGAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 22 0 10 0.40 4 3 1 0 0 0
.......................GAGTGTGTGTAAGTGAGGTCACAAT........................................................................................................................................................................................................... 25 0 8 0.38 3 3 0 0 0 0
..................................................TTCGTGAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 25 0 9 0.33 3 2 0 1 0 0
.........................................................................TAAGCTCAGGTAAGTAAACACATATC........................................................................................................................................................ 26 3 9 0.33 3 0 0 0 3 0
................................................CGTTCGTGAGTGAGTTAAGTTAAGT.................................................................................................................................................................................. 25 0 9 0.33 3 1 2 0 0 0
...................................................TCGTGAGTGAGTTAAGTTAAGTT................................................................................................................................................................................. 23 0 9 0.33 3 1 0 2 0 0
.....................................................................................................................................................................................................................................ACAGGAGCTGTATGGTGA.... 18 2 3 0.33 1 1 0 0 0 0
..............................................................................TCAGGCAAGTGAAAAAATA.......................................................................................................................................................... 19 2 16 0.25 4 2 0 2 0 0
.................................................................AGTTAAGTTAAGCTCAGGT....................................................................................................................................................................... 19 0 9 0.22 2 2 0 0 0 0
...............................................TCGTTCGTGAGTGAGTTAAGTTA..................................................................................................................................................................................... 23 0 9 0.22 2 0 1 1 0 0
.......................GAGTGTGTGTAAGTGAGGTCA............................................................................................................................................................................................................... 21 0 9 0.22 2 1 0 1 0 0
.....................................................................................................................................................................................................................AGTAGGCACTTGACGTACTGG................. 21 0 5 0.20 1 0 0 0 1 0
......................................................TGAGTGAGTTAAGTTAAGTTAA............................................................................................................................................................................... 22 0 10 0.20 2 2 0 0 0 0
..............................TGTAAGTGAGGTCACAATCGT........................................................................................................................................................................................................ 21 0 8 0.13 1 0 1 0 0 0
.....................................................................AAGTTAAGCTCAGGTAAGTAAACAC............................................................................................................................................................. 25 2 8 0.13 1 1 0 0 0 0
.....................................GAGGTCACAATCGTTCGTGAGTGAGTTA.......................................................................................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0
...................................................................TTAAGTTAAGCTCAGGTAAGTAA................................................................................................................................................................. 23 0 8 0.13 1 1 0 0 0 0
.............................GTGTAAGTCAGGTCACAATCGTTC...................................................................................................................................................................................................... 24 1 8 0.13 1 0 0 1 0 0
....................................................................TAAGTTAAGCTCAGGTAAGTAAACACA............................................................................................................................................................ 27 2 8 0.13 1 1 0 0 0 0
......................................AGGTCACAATCGTTCGTGAGTGAGTTA.......................................................................................................................................................................................... 27 0 8 0.13 1 1 0 0 0 0
...........................GTGTGTAAGTGAGGTCACAATCGTTC...................................................................................................................................................................................................... 26 0 8 0.13 1 1 0 0 0 0
.......................................................................GTTAAGCTCAGGTAAGTAAACAC............................................................................................................................................................. 23 2 8 0.13 1 1 0 0 0 0
..........................................................TGAGTTAAGTTAAGTTAAGCTC........................................................................................................................................................................... 22 0 8 0.13 1 1 0 0 0 0
...........................GTGTGTAAGTGAGGTCACAATCGT........................................................................................................................................................................................................ 24 0 8 0.13 1 0 1 0 0 0
..................................................................GTTAAGTTAAGCTCAGGTAAGTAA................................................................................................................................................................. 24 0 8 0.13 1 1 0 0 0 0
........................................................................TTAAGCTCAGGTAAGTAAACACA............................................................................................................................................................ 23 2 8 0.13 1 1 0 0 0 0
.................................................TTTCGTGAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 26 1 9 0.11 1 0 1 0 0 0
............................................................AGTTAAGTTAAGTTAAGCTC........................................................................................................................................................................... 20 0 9 0.11 1 1 0 0 0 0
.................................................GTTCGTGAGTGAGTTAAGTTAAGTT................................................................................................................................................................................. 25 0 9 0.11 1 1 0 0 0 0
............................................................AGTTAAGTTAAGTTAAGCTCAGGT....................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0
............................................CAATCGTTCGTGAGTGAGTTAAGTTA..................................................................................................................................................................................... 26 0 9 0.11 1 1 0 0 0 0
..............................................ATCGTTCGTGAGTGAGTTAAGTTA..................................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0
.............................................AATCGTTCGTGAGTGAGTTAAGTTA..................................................................................................................................................................................... 25 0 9 0.11 1 0 1 0 0 0
....................................................CGTGAGTGAGTTAAGTTAAGT.................................................................................................................................................................................. 21 0 9 0.11 1 0 1 0 0 0
...........................................................................AGCTCAGGTAAGTAAACACATATC........................................................................................................................................................ 24 3 9 0.11 1 1 0 0 0 0
............................................CAATCGTTCGTGAGTGAGTTAAGTT...................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0
....................................................CGTTAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 23 1 9 0.11 1 1 0 0 0 0
............................................AAATCGTTCGTGAGTGAGTTAAGTTAA.................................................................................................................................................................................... 27 1 9 0.11 1 0 1 0 0 0
.....................................................GTGAGTGAGTTAAGTTAAGTTAAGC............................................................................................................................................................................. 25 0 9 0.11 1 1 0 0 0 0
................................................CGTTCGTGAGTGAGTTAAGTTA..................................................................................................................................................................................... 22 0 9 0.11 1 0 1 0 0 0
.................................................GTTCGTGAGTGAGTTAAGTTAAGT.................................................................................................................................................................................. 24 0 9 0.11 1 1 0 0 0 0
..................................................TTCGTGAGTGAGTTAAGTTAAGT.................................................................................................................................................................................. 23 0 9 0.11 1 0 1 0 0 0
...........................................ACAATCGTTCGTGAGTGAGTTAAGT....................................................................................................................................................................................... 25 0 9 0.11 1 0 1 0 0 0
...................................................TCGTGAGTGAGTTAAGTTAAGTTAA............................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0
.................................................GTTCGTGAGTGAGTTAAGTTAA.................................................................................................................................................................................... 22 0 9 0.11 1 1 0 0 0 0
.............................................................GTTAAGTTAAGTTAAGCTCAGGTA...................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0
....................................................CGTGAGTTAGTTAAGTTAAGTTA................................................................................................................................................................................ 23 1 9 0.11 1 0 1 0 0 0
....................................................CGCGAGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 23 1 9 0.11 1 0 0 1 0 0
............................................CAATCGTTCGTGAGTGAGTTAAGT....................................................................................................................................................................................... 24 0 9 0.11 1 0 1 0 0 0
.....................................................GTGAGTGAGTTAAGTTAAGTTAA............................................................................................................................................................................... 23 0 10 0.10 1 0 1 0 0 0
........................................................AGTGAGTTAAGTTAAGTTA................................................................................................................................................................................ 19 0 10 0.10 1 1 0 0 0 0
...........................................ACAATCGTTCGTGAGTGAGTTAA......................................................................................................................................................................................... 23 0 10 0.10 1 0 1 0 0 0
...........ATATGTAAGTGTGAGTGTGTGTAAGT...................................................................................................................................................................................................................... 26 0 10 0.10 1 0 1 0 0 0
..........................................CACAATCGTTCGAGAAAGAGT............................................................................................................................................................................................ 21 3 11 0.09 1 1 0 0 0 0
....................................................CGTGAGTGAGTTAAGTTA..................................................................................................................................................................................... 18 0 12 0.08 1 0 1 0 0 0
...................GTGTGAGTGTGTGTAAGTGCG................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004517:15943-16193 - dwi_1189 ATGAGAAGCA-ATA-TACATTCACA-CTCACACACATTCACTCCAGTGTTAGCAA-GCACTCA----CTC-AATTCAATTCAATTCGAGTCCATTCATTTTTTTATATGTATTGAGTAAAGCCGAGCAGCTCTCTAATATATATATATAAA-------------T-GGAATTGCTGGCATAAACCCTTCTGCTATTGATTTCGCACTTTATCTTGGTATTCCAGATGAACTTCTACTCATCCGTGAACTGCATGACCTCGACCTACCACTTCTT
droVir3 scaffold_12736:521304-521448 + ATGTGACACA-ACA-CGCACTCACA-TTGTTACGCATGCCTTTCATTGTGTGCCTCGCACTCA----CTC-AATTTAATTTAATTCGAGTCCATTCAATTTAACGTATATTGTGAGTGAAGCCATTTTCCTCTCTAAATC-TATTTGAAAA-------------TAG-----------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:1643060-1643230 + ATGGGATATT-GAG-TGCATGCGAT-CTCCCACTCTATCAACACATTGTATGCCTATCAATCA----CTC-ATTCAGCCTCAATTCGAGTACACTTAATTTTGC-TAGGTTATGAGTGCGGCCATGCAGCTCTCTAATATAAAAATATAAA-------------C-AAGTAAGCTAGTCGAGACTGCTCGACTA--------------------------------------------------------------------------------
droGri2 scaffold_15101:125585-125593 + CCGATTCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group5:293491-293636 + ATGAAGCCCACACT-CACACTCGTA-TTCCTATAGACTAAATTTATTGTGTGCGTCGCACTCA----TTC-AACTCAATTCAACTCGAATGCATCCTATTGGACTTATGTTTTGAGTGGATCCATACAGATCTCCAGTACATACATACATA-------------T-G-----------------------------------------------------------------------------------------------------------
droPer2 scaffold_58:119522-119667 - ATGAAGCCCACACT-CACACTCGTA-TTCCTATAGACTAAATTTATTGTGTGCGTCGCACTCA----TTC-AACTCAATTCAACTCGAATGCATCCTATTGGACTTATGTTTTGAGTGGAGCCATACAGATCTCCAGTACATACATACATA-------------T-G-----------------------------------------------------------------------------------------------------------
droAna3 scaffold_13089:609439-609622 + ACGAGACGA--ACC-TAAGCTTACA-TTCATACAATTTCATTTCATTTCCAACATTCCACTCA----CTC-CATTCTATTCGATTCGAATGTACTCTATTAGACATATGTTATGAATGTAATCATGCAGATGTCTAGTGTGTATGTGTGAAATAAACTTGAAAAT-------ATTGTCTAAATTCTTTCAACTTTTAGTT--------------------------------------------------------------------------
droBip1 scf7180000395875:3204-3351 + TGAACTCAA---------------A--TCACATAACTTAATTTCGCT-TTTGCGTCGTATTCACTAAATTCAGTTCAATTCAATTAGAATTAATTCATTTTATTGTATGCTATGAGTGAAGCCATGCATATGTTAAGTTGGCATGCCCGTG----------------------------TAAAT--TTCAGCTATT------------------------------------------------------------------------------
droKik1 scf7180000300028:6067-6221 - ATGAAGCAAA-ACG-AGAACGCATACCTGATACAATGTCGCTTCATTTCTTGCATTCCACTCA----TTC-CATTCTATTTCATTCGAATGTATTCAATGAAGCGTATGTTGTGAGTGGTTTCATGCAGACGTCTAGTCTGAATACCCATC-------------G-A--ACTGTAGGC------------------------------------------------------------------------------------------------
droFic1 scf7180000451907:12854-12998 - AAGAGAGGA--AAA-CAGGCTTGCA-CTCATACAATGTCATTTCATTTGCATCATTCCACTCA----CTC-CATTCTATTCGATTCGAATGTATTCATTTAGACGTATGTTATGAATGTAATCATGCAGACGTCTAGTGAGCATACTACAA-------------TGG-----------------------------------------------------------------------------------------------------------
droEle1 scf7180000490505:16290-16424 + GTCAGATTCT-ATA-CGCACTCACA-TTAATACAACTTCGTTTTATTGTGTTCAAGGGACTCA----CTC-AACTCAATTCAATTCGAATACATTCAGCTTAAAGTGTGTAGTAAGTGATGCCATGCAGATGTCTAATACATA-----------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000761120:5057-5088 + TT---------------------------------------------------------------------------------------------------------------GAGTGCAGCCGTGCAGCTCTCTAATACACA-----------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302304:82310-82336 + ATAC------------ACATTCATA-TTCATACACATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415126:14344-14480 + GTCAAACTCA-GTA--TCATTCAAA-TTCACTCGCTTTCATTTGACTGTG-GGATGTCACTCA----ATT-CATTCATGATAATTCGAATTAATTCAAATATATTCAACTTTCGAATGAATTTAAGCAGACCTCTAATACAAGCATA-------------------------------------------------------------------------------------------------------------------------------
droSim2 node_112381:41-73 + AT------------------------------------------------------------------TC-AATTCAATTCAATTCAATTCTATTCAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrX_random_001:75591-75733 + ATGAGTGGA--ATGAGAACCTCTCA-CTTATACAATGTCGTTTCATTTCGTGCGTTTCACTCA----TTC-AATTCAATTCCATTCGAATGTATTCTATGTGACGTATGTTATGAGTGGAATCATGCAGATGTCTAGTACATATGTGCCAA---------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:9165186-9165320 - ATAATAAA---ATA-TACCTATGTA-TCTATACAACTTTGCCCCATTTCGATCAAGGAACTCG----CTC-AATTCAATTCGATTTGAGTGCATTCATTTAACAGTAAGTTGTGAATGATGCCGTGCAGATGTTTAGTATACATA---------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATGAGAAGCA-ATA-TACATTCACA-CTCACACACATTCACTCCAGTGTTAGCAA-GCACTCA----CTC-AATTCAATTCAATTCGAGTCCATTCATTTTTTTATATGTATTGAGTAAAGCCGAGCAGCTCTCTAATATATATATATAAA-------------T-GGAATTGCTGGCATAAACCCTTCTGCTATTGATTTCGCACTTTATCTTGGTATTCCAGATGAACTTCTACTCATCCGTGAACTGCATGACCTCGACCTACCACTTCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCAAT...................................................................................................................................................................................................2793.0027022050
............TA-TACATTCACA-CTCACACACATTCAC.........................................................................................................................................................................................................................................27102.5025025000
....................TCACA-CTCACACACATTCACTCCAG....................................................................................................................................................................................................................................2591.4413013000
..........................................................................TCAATTCAATTCGAGTCCATTCATT...............................................................................................................................................................................2581.13906030
............................................................................................................................................................................................................................................TCATCCGTGAACTGCATGACCTCGACC...........2711.00101000
....................................................................TC-AATTCAATTCAATTCGAGTCCAT....................................................................................................................................................................................2590.89806020
..........................................................................TCAATTCAATTCGAGTCCATTCATTT..............................................................................................................................................................................2680.63504010
.....................................TCACTCCAGTGTTAGCAA-GCACTCA----CT.............................................................................................................................................................................................................2770.57404000
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCA.....................................................................................................................................................................................................2590.56503020
...............TACATTCACA-CTCACACACATTCAC.........................................................................................................................................................................................................................................25100.50505000
.........................................TCCAGTGTTAGCAA-GCACTCA----CTC-AAT........................................................................................................................................................................................................2780.50404000
...................TTCACA-CTCACACACATTCACTCCAG....................................................................................................................................................................................................................................2690.44404000
...............................................GTTAGCAA-GCACTCA----CTC-AATTCAAT...................................................................................................................................................................................................2690.44404000
................................CACATTCACTCCAGTGTTAGCAA-GCACT.....................................................................................................................................................................................................................2870.43303000
............TA-TACATTCACA-CTCACACACATTCA..........................................................................................................................................................................................................................................26100.40404000
...........................................................................CAATTCAATTCGAGTCCATTCATT...............................................................................................................................................................................2480.38303000
.....................CACA-CTCACACACATTCACTCCAGTGT.................................................................................................................................................................................................................................2780.38302010
..........................................................................TCAATTCAATTCGAGTCCATTCAT................................................................................................................................................................................2490.33303000
....................................................................TC-AATTCAATTCAATTCGAGTCCATT...................................................................................................................................................................................2690.33303000
.................................................TAGCAA-GCACTCA----CTC-AATTCAATTCAAT..............................................................................................................................................................................................2990.33303000
...............TACATTCACA-CTCACACACATTCACTC.......................................................................................................................................................................................................................................2790.33303000
............TA-TACATTCACA-CTCACACACATTC...........................................................................................................................................................................................................................................25100.30303000
..............................CACACATTCACTCCAGTGTTAGCAA-GCAC......................................................................................................................................................................................................................2970.29220000
.....................................TCACTCCAGTGTTAGCAA-GCACTCA----...............................................................................................................................................................................................................2570.29202000
....................................TTCACTCCAGTGTTAGCAA-GCACTCA----CT.............................................................................................................................................................................................................2870.29202000
..........................................................................TCAATTCAATTCGAGTCCATTCATTTG.............................................................................................................................................................................2780.25202000
............................CACACACATTCACTCCAGTGTTAGCAA-G.........................................................................................................................................................................................................................2880.25202000
....................TCACA-CTCACACACATTCACTCCAGTGT.................................................................................................................................................................................................................................2880.25202000
...........................TCACACACATTCACTCCAGTGTTAGC.............................................................................................................................................................................................................................2680.25202000
.....................CACA-CTCACACACATTCACTCCAG....................................................................................................................................................................................................................................2490.22202000
.....................................................................C-AATTCAATTCAATTCGAGTCCAT....................................................................................................................................................................................2490.22201010
.................................................TAGCAA-GCACTCA----CTC-AATTCAAT...................................................................................................................................................................................................2490.22201010
.........................................................................TTCAATTCAATTCGAGTCCATTCAT................................................................................................................................................................................2590.22200020
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCAA....................................................................................................................................................................................................2690.22201010
................................................TTAGCAA-GCACTCA----CTC-AATTCAAT...................................................................................................................................................................................................2590.22202000
.............A-TACATTCACA-CTCACACACATTCA..........................................................................................................................................................................................................................................25100.20202000
......AGCA-ATA-TACATTCACA-CTCACACACA..............................................................................................................................................................................................................................................27100.20202000
.................................ACATTCACTCCAGTGTTAGCAA-GCACT.....................................................................................................................................................................................................................2770.14101000
...............................................................................TCAATTCGAGTCCATTCATTTTTTTATA.......................................................................................................................................................................2870.14101000
.....................................TCACTCCAGTGTTAGCAA-GCACTCA----C..............................................................................................................................................................................................................2670.14101000
...............................................................................TCAATTCGAGTCCATTCATTTTTTTA.........................................................................................................................................................................2670.14101000
..............................................................................TTCAATTCGAGTCCATTCATTTTTTTA.........................................................................................................................................................................2770.14101000
................................CACATTCACTCCAGTGTTAGCAA-GCAC......................................................................................................................................................................................................................2770.14101000
.....................................................................................CGAGTCCATTCATTTTTTTATATGTAT..................................................................................................................................................................2770.14101000
................................................................................CAATTCGAGTCCATTCATTTTTT...........................................................................................................................................................................2370.14101000
..............................................................................TTCAATTCGAGTCCATTCATTTTTTTATA.......................................................................................................................................................................2970.14101000
...................................................................................TTCGAGTCCATTCATTTTTTTATAT......................................................................................................................................................................2570.14101000
...............................................................................TCAATTCGAGTCCATTCATTTTTT...........................................................................................................................................................................2470.14101000
....................................................................................TCGAGTCCATTCATTTTTTTATATGTAT..................................................................................................................................................................2870.14101000
...............................................................................TCAATTCGAGTCCATTCATTTTTTTAT........................................................................................................................................................................2770.14101000
....................................TTCACTCCAGTGTTAGCAA-GCACTCA----C..............................................................................................................................................................................................................2770.14101000
.............................................GTGTTAGCAA-GCACTCA----CTC-AATTCA.....................................................................................................................................................................................................2680.13101000
.........................................TCCAGTGTTAGCAA-GCAC......................................................................................................................................................................................................................1880.13101000
...........................TCACACACATTCACTCCAGTGTTAGCA............................................................................................................................................................................................................................2780.13101000
..............................CACACATTCACTCCAGTGTTAGCAA-G.........................................................................................................................................................................................................................2680.13101000
.........................................................................TTCAATTCAATTCGAGTCCATTCATT...............................................................................................................................................................................2680.13101000
..........................................CCAGTGTTAGCAA-GCACTCA----CTC-AAT........................................................................................................................................................................................................2680.13101000
................................................................................CAATTCGAGTCCATTCATT...............................................................................................................................................................................1980.13101000
......................................CACTCCAGTGTTAGCAA-GCACTCA----CT.............................................................................................................................................................................................................2680.13101000
..............................................................................TTCAATTCGAGTCCATTCATT...............................................................................................................................................................................2180.13101000
...........................TCACACACATTCACTCCAGTGT.................................................................................................................................................................................................................................2280.13101000
.............................ACACACATTCACTCCAGTGTTAGCAA-..........................................................................................................................................................................................................................2680.13101000
.........................................TCCAGTGTTAGCAA-GCACTCA----CTC-AA.........................................................................................................................................................................................................2680.13101000
......................................CACTCCAGTGTTAGCAA-GCACTCA----CTC-AA.........................................................................................................................................................................................................2980.13101000
.................................ACATTCACTCCAGTGTTAGCAA-GCA.......................................................................................................................................................................................................................2580.13101000
...........................................................................CAATTCAATTCGAGTCCATTCATTT..............................................................................................................................................................................2580.13101000
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCAATTC.................................................................................................................................................................................................2990.11101000
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCAAA...................................................................................................................................................................................................2790.11101000
....................................................................TC-AATTCAATTCAATTCGAGTCCC.....................................................................................................................................................................................2490.11101000
....................TCACA-CTCACACACATTCACTCCAGTG..................................................................................................................................................................................................................................2790.11101000
................................................TTAGCAA-GCACTCA----CTC-AATTCAA....................................................................................................................................................................................................2490.11101000
..........................................................................TCAATTCAATTCGAGTCCATTCA.................................................................................................................................................................................2390.11101000
.....................CACA-CTCACACACATTCACTCCAGTG..................................................................................................................................................................................................................................2690.11101000
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCAATT..................................................................................................................................................................................................2890.11101000
....................TCACA-CTCACACACATTCACTCCAGT...................................................................................................................................................................................................................................2690.11101000
............TA-TACATTCACA-CTCACACACATTCACTC.......................................................................................................................................................................................................................................2990.11101000
.TGAGAAGCA-ATA-TACATTCACA-CTCACA..................................................................................................................................................................................................................................................2890.11101000
...............................................GTTAGCAA-GCACTCA----CTC-AATTCAATT..................................................................................................................................................................................................2790.11101000
.....................................................................C-AATTCAATTCAATTCGAGTCCATTC..................................................................................................................................................................................2690.11100010
................................................TTAGCAA-GCACTCA----CTC-AATTCAATT..................................................................................................................................................................................................2690.11100010
.........................................................................TTCAATTCAATTCGAGTCCATTCA.................................................................................................................................................................................2490.11101000
..............................................TGTTAGCAA-GCACTCA----CTC-AATTCAATA..................................................................................................................................................................................................2890.11101000
..............................................TGTTAGCAA-GCACTCA----CTC-AATTC......................................................................................................................................................................................................2490.11101000
.......................CA-CTCACACACATTCACTCCAG....................................................................................................................................................................................................................................2290.11101000
....................................................CAA-GCACTCA----CTC-AATTCA.....................................................................................................................................................................................................1990.11101000
............TA-TACATTCACA-CTCACACACATTCACA........................................................................................................................................................................................................................................28100.10101000
.............A-TACATTCACA-CTCACACACATTCAC.........................................................................................................................................................................................................................................26100.10101000
.............A-TACATTCACA-CTCACACACATT............................................................................................................................................................................................................................................23100.10101000
..............................................TGTTAGCAA-GCACTCA----CTC-AAT........................................................................................................................................................................................................22100.10101000
..............................................TGTTAGCAA-GCACTCA----CTC-AATA.......................................................................................................................................................................................................23100.10101000
..................ATTCACA-CTCACACACATTCAC.........................................................................................................................................................................................................................................22100.10101000
...............TACATTCACA-CTCACACACATTCA..........................................................................................................................................................................................................................................24100.10101000
..................ATTCACA-CTCACACACATTCA..........................................................................................................................................................................................................................................21100.10101000
.................CATTCACA-CTCACACACATTCAC.........................................................................................................................................................................................................................................23100.10101000
..............................................TGTTAGCAA-GCACTCA----CTC-AA.........................................................................................................................................................................................................21100.10101000
droVir3
ATGTGACACA-ACA-CGCACTCACA-TTGTTACGCATGCCTTTCATTGTGTGCCTCGCACTCA----CTC-AATTTAATTTAATTCGAGTCCATTCAATTTAACGTATATTGTGAGTGAAGCCATTTTCCTCTCTAAATC-TATTTGAAAA-------------TAG-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ATGGGATATT-GAG-TGCATGCGAT-CTCCCACTCTATCAACACATTGTATGCCTATCAATCA----CTC-ATTCAGCCTCAATTCGAGTACACTTAATTTTGC-TAGGTTATGAGTGCGGCCATGCAGCTCTCTAATATAAAAATATAAA-------------C-AAGTAAGCTAGTCGAGACTGCTCGACTA--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................TGTATGCCTATCAATCA----CTC-ATTCAGCC...................................................................................................................................................................................................28110.0010500050
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCATG....................................................................................................................................................2466.834127200012
..............................................TGTATGCCTATCAATCA----CTC-ATTCAGC....................................................................................................................................................................................................2714.004400000
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCATGC...................................................................................................................................................2563.67223000316
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCATGCAGC................................................................................................................................................2862.8317720026
..............................................TGTATGCCTATCAATCA----CTC-ATTCAG.....................................................................................................................................................................................................2612.002200000
...............................................................................TCAATTCGAGTACACTTAATTTTGC-TAGG.....................................................................................................................................................................2911.001100000
.............................................TTGTATGCCTATCAATCA----CTC-...........................................................................................................................................................................................................2111.001100000
.................................TCTATCAACACATTGTATGCCTATCAA......................................................................................................................................................................................................................2711.001100000
..................................................TGCCTATCAATCA----CTC-ATTCAGCC...................................................................................................................................................................................................2411.001000010
...........................................CATTGTATGCCTATCAATCA----CTC-A..........................................................................................................................................................................................................2411.001100000
......................................................................................................GC-TAGGTTATGAGTGCGGCCATG....................................................................................................................................................2360.674400000
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCAT.....................................................................................................................................................2370.574200011
.....................................................................................................TGC-TAGGTTATGAGTGCGGC........................................................................................................................................................2070.574210001
...............TGCATGCGAT-CTCCCACTCTAT............................................................................................................................................................................................................................................2220.501100000
...............TGCATGCGAT-CTCCCACTCTATCAACAC......................................................................................................................................................................................................................................2820.501100000
...............TGCATGCGAT-CTCCCACTCTATCAACACA.....................................................................................................................................................................................................................................2920.501100000
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCA......................................................................................................................................................2270.433200001
......TATT-GAG-TGCATGCGAT-CTCCCA..................................................................................................................................................................................................................................................2330.331100000
......TATT-GAG-TGCATGCGAT-CTCCCACT................................................................................................................................................................................................................................................2530.331100000
..............................CACTCTATCAACACATTGTATGCCC...........................................................................................................................................................................................................................2530.331000010
.........................................................................................................TAGGTTATGAGTGCGGCCATGCAGC................................................................................................................................................2570.292100001
.....................................................................................................TGC-TAGGTTATGAGTGCGGCC.......................................................................................................................................................2170.292200000
............................CCCACTCTATCAACACATTGTAT...............................................................................................................................................................................................................................2340.251100000
.................................TCTATCAACACATTGTATGCCTATCA.......................................................................................................................................................................................................................2650.201100000
......................................................................................................GC-TAGGTTATGAGTGCGGCCATGCAGC................................................................................................................................................2760.171100000
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCATGCA..................................................................................................................................................2660.171100000
....................................................................................................TTGC-TAGGTTATGAGTGCGGCCATG....................................................................................................................................................2560.171000001
......................................................................................................GC-TAGGTTATGAGTGCGGCCATGC...................................................................................................................................................2460.171100000
.....................................................................................................TGC-TAGGTTATGAGTGCGGCCATT....................................................................................................................................................2470.141100000
...................................................................................................TTTGC-TAGGTTATGAGTGCGGCCAT.....................................................................................................................................................2570.141000001
.........................................................................................................TAGGTTATGAGTGCGGCCATG....................................................................................................................................................2170.141100000
...................................................................................................TTTGC-TAGGTTATGAGTGCGGCC.......................................................................................................................................................2370.141000001
...................................................................................................TTTGC-TAGGTTATGAGTGCGG.........................................................................................................................................................2190.111000001
............................................................................................................GTTATGAGTGCGGCCATGCAGC................................................................................................................................................2290.111100000
..............................................................................................................TATGAGTGCGGCCATGCAGC................................................................................................................................................20120.081000010
droGri2
CCGATTCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
ATGAAGCCCACACT-CACACTCGTA-TTCCTATAGACTAAATTTATTGTGTGCGTCGCACTCA----TTC-AACTCAATTCAACTCGAATGCATCCTATTGGACTTATGTTTTGAGTGGATCCATACAGATCTCCAGTACATACATACATA-------------T-G-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................CGTCGCACTCA----TTC-AACTCA.....................................................................................................................................................................................................2020.5010100000000
....................................................CGTCGCACTCA----TTC-AACTCAA....................................................................................................................................................................................................2120.5010100000000
..................................................TGCGTCGCACTCA----TTC-AACTC......................................................................................................................................................................................................2120.5010100000000
droPer2
ATGAAGCCCACACT-CACACTCGTA-TTCCTATAGACTAAATTTATTGTGTGCGTCGCACTCA----TTC-AACTCAATTCAACTCGAATGCATCCTATTGGACTTATGTTTTGAGTGGAGCCATACAGATCTCCAGTACATACATACATA-------------T-G-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACGAGACGA--ACC-TAAGCTTACA-TTCATACAATTTCATTTCATTTCCAACATTCCACTCA----CTC-CATTCTATTCGATTCGAATGTACTCTATTAGACATATGTTATGAATGTAATCATGCAGATGTCTAGTGTGTATGTGTGAAATAAACTTGAAAAT-------ATTGTCTAAATTCTTTCAACTTTTAGTT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................TGTACTCTATTAGACATATGTTATGAATG............................................................................................................................................................2911.001100000
droBip1
TGAACTCAA---------------A--TCACATAACTTAATTTCGCT-TTTGCGTCGTATTCACTAAATTCAGTTCAATTCAATTAGAATTAATTCATTTTATTGTATGCTATGAGTGAAGCCATGCATATGTTAAGTTGGCATGCCCGTG----------------------------TAAAT--TTCAGCTATT------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGAAGCAAA-ACG-AGAACGCATACCTGATACAATGTCGCTTCATTTCTTGCATTCCACTCA----TTC-CATTCTATTTCATTCGAATGTATTCAATGAAGCGTATGTTGTGAGTGGTTTCATGCAGACGTCTAGTCTGAATACCCATC-------------G-A--ACTGTAGGC------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAGAGAGGA--AAA-CAGGCTTGCA-CTCATACAATGTCATTTCATTTGCATCATTCCACTCA----CTC-CATTCTATTCGATTCGAATGTATTCATTTAGACGTATGTTATGAATGTAATCATGCAGACGTCTAGTGAGCATACTACAA-------------TGG-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTCAGATTCT-ATA-CGCACTCACA-TTAATACAACTTCGTTTTATTGTGTTCAAGGGACTCA----CTC-AACTCAATTCAATTCGAATACATTCAGCTTAAAGTGTGTAGTAAGTGATGCCATGCAGATGTCTAATACATA-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TT---------------------------------------------------------------------------------------------------------------GAGTGCAGCCGTGCAGCTCTCTAATACACA-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAC------------ACATTCATA-TTCATACACATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTCAAACTCA-GTA--TCATTCAAA-TTCACTCGCTTTCATTTGACTGTG-GGATGTCACTCA----ATT-CATTCATGATAATTCGAATTAATTCAAATATATTCAACTTTCGAATGAATTTAAGCAGACCTCTAATACAAGCATA-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
AT------------------------------------------------------------------TC-AATTCAATTCAATTCAATTCTATTCAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.T------------------------------------------------------------------TC-AATTCAATTCAATTCAATTCTA.....................................................................................................................................................................................25150.07100000010000000000
droYak3
ATGAGTGGA--ATGAGAACCTCTCA-CTTATACAATGTCGTTTCATTTCGTGCGTTTCACTCA----TTC-AATTCAATTCCATTCGAATGTATTCTATGTGACGTATGTTATGAGTGGAATCATGCAGATGTCTAGTACATATGTGCCAA---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................TACAATGTCGTTTCATTTCGTGCGT...........................................................................................................................................................................................................................25439.2515703845100100072
..............................TACAATGTCGTTTCATTTCGTGCGTT..........................................................................................................................................................................................................................26438.5015409016000000048
.........................................................................................TGTATTCTATGTGACGTATGTTATGAG..............................................................................................................................................................27423.7595088210000004
....................................................................................................................TGGAATCATGCAGATGTCTAGTACATA...................................................................................................................................27115.0015012100000002
.........................................................................................TGTATTCTATGTGACGTATGTTATG................................................................................................................................................................25414.00560163910000000
.TGAGTGGA--ATGAGAACCTCTCA-CT......................................................................................................................................................................................................................................................24413.7555025300000000
.........................................................................................................................TCATGCAGATGTCTAGTACATATG.................................................................................................................................24110.001006040000000
.........................................................................................................................TCATGCAGATGTCTAGTACATATGTGC..............................................................................................................................2719.00907200000000
....................................................................................................................TGGAATCATGCAGATGTCTAGTACA.....................................................................................................................................2519.00905130000000
.........................................................................................TGTATTCTATGTGACGTATGTTATGAGT.............................................................................................................................................................2845.75230111000000011
....................TCTCA-CTTATACAATGTCGTTTCATT...................................................................................................................................................................................................................................2614.00403100000000
............................TATACAATGTCGTTTCATTTCGTGCGT...........................................................................................................................................................................................................................2714.00400400000000
.TGAGTGGA--ATGAGAACCTCTCA-CC......................................................................................................................................................................................................................................................2444.0016001600000000
........................................................TCACTCA----TTC-AATTCAATTCCATTCGAA.........................................................................................................................................................................................2833.671108300000000
.......................................................TTCACTCA----TTC-AATTCAATTCCATTCGAA.........................................................................................................................................................................................2933.671108300000000
............TGAGAACCTCTCA-CTTATACAATGTCG..........................................................................................................................................................................................................................................2713.00303000000000
............TGAGAACCTCTCA-CTTATACAATGTCGT.........................................................................................................................................................................................................................................2813.00303000000000
.........................................................................................TGTATTCTATGTGACGTATGTTAT.................................................................................................................................................................2442.501001000000009
............................TATACAATGTCGTTTCATTTCGTGCGTT..........................................................................................................................................................................................................................2812.00201100000000
....................TCTCA-CTTATACAATGTCGTTTCAT....................................................................................................................................................................................................................................2512.00202000000000
............TGAGAACCTCTCA-CTTATACAATGTCGTT........................................................................................................................................................................................................................................2912.00200200000000
..............................TACAATGTCGTTTCATTTCGTGCGC...........................................................................................................................................................................................................................2542.00800800000000
........................................................................................................................ATCATGCAGATGTCTAGTACATATG.................................................................................................................................2512.00201010000000
......................................................................................................................GAATCATGCAGATGTCTAGTACATA...................................................................................................................................2512.00202000000000
.....................................................................................................................GGAATCATGCAGATGTCTAGTACATA...................................................................................................................................2612.00202000000000
..............................TACAATGTCGTTTCATTTCGTGCGTTT.........................................................................................................................................................................................................................2741.75706100000000
...............................ACAATGTCGTTTCATTTCGTGCGTT..........................................................................................................................................................................................................................2541.75706100000000
.........................................................................................TGTATTCTATGTGACGTATGTTATGA...............................................................................................................................................................2641.50606000000000
.........................................................................................TGTATTCTATGTGACGTATGTTA..................................................................................................................................................................2341.50604200000000
................................................................................................................TGAGTGGAATCATGCAGATGTCTAG.........................................................................................................................................2541.50604110000000
..............................................................................................................TATGAGTGGAATCATGCAGATGTCTAG.........................................................................................................................................2741.25503200000000
..............................TACAATGTCGTTTCATTTCGTGCGTC..........................................................................................................................................................................................................................2641.25500500000000
...................................TGTCGTTTCATTTCGTGCGTTTCACT.....................................................................................................................................................................................................................2641.25501400000000
..................................................................................................................AGTGGAATCATGCAGATGTCTAGTACA.....................................................................................................................................2711.00101000000000
....................TCTCA-CTTATACAATGTCGTTTCAC....................................................................................................................................................................................................................................2511.00100100000000
.TGAGTGGA--ATGAGAACCTCTCA-CTT.....................................................................................................................................................................................................................................................2511.00101000000000
...................................................................................................................GTGGAATCATGCAGATGTCTAGTACATA...................................................................................................................................2811.00101000000000
........................................................TCACTCA----TTC-AATTCAATTCCATTCG...........................................................................................................................................................................................2631.00303000000000
.....................................................................................CGAATGTATTCTATGTGACGTATGT....................................................................................................................................................................2541.00400000000004
............................TATACAATGTCGTTTCATTTCGTGCGC...........................................................................................................................................................................................................................2711.00100100000000
.......................CA-CTTATACAATGTCGTTTCATTTCG................................................................................................................................................................................................................................2611.00101000000000
...........................TTATACAATGTCGTTTCAT....................................................................................................................................................................................................................................1911.00101000000000
.........................................................CACTCA----TTC-AATTCAATTCCATTCGAA.........................................................................................................................................................................................2731.00301200000000
............................TATACAATGTCGTTTCATT...................................................................................................................................................................................................................................1911.00101000000000
...................CTCTCA-CTTATACAATGTCGTTTCATT...................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................CATGCAGATGTCTAGTACATATG.................................................................................................................................2311.00101000000000
.......................................................TTCACTCA----TTC-AATTCAATTCCATTCG...........................................................................................................................................................................................2731.00302100000000
.........................................................................................................................TCATGCAGATGTCTAGTACATATGTG...............................................................................................................................2611.00100100000000
.....TGGA--ATGAGAACCTCTCA-CTTATACAA...............................................................................................................................................................................................................................................2711.00101000000000
...........................TTATACAATGTCGTTTCATTTCGTGCGC...........................................................................................................................................................................................................................2811.00100100000000
............................TATACAATGTCGTTTCATTTCGTGCG............................................................................................................................................................................................................................2611.00100000010000
.......................................................TTCACTCA----TTC-AATTCAATTCCATTCGA..........................................................................................................................................................................................2831.00303000000000
............TGAGAACCTCTCA-CTTATACAATGTC...........................................................................................................................................................................................................................................2611.00100100000000
....................................................................................................TGACGTATGTTATGAGTGGAATCATG....................................................................................................................................................2641.00404000000000
......................TCA-CTTATACAATGTCGTTTCATTTCC................................................................................................................................................................................................................................2711.00100100000000
...............................................................................TCCATTCGAATGTATTCTATGTGACG.........................................................................................................................................................................2641.00403010000000
.........................................................................................................................TCATGCAGATGTCTAGTACATATGTGCC.............................................................................................................................2811.00101000000000
...................................................................................TTCGAATGTATTCTATGTGACGTATGT....................................................................................................................................................................2740.75300210000000
.........................................................................................TGTATTCTATGTGACGTATGTT...................................................................................................................................................................2240.75301110000000
...........................................................................................TATTCTATGTGACGTATGTTATGAG..............................................................................................................................................................2540.75302010000000
..........................................................................................GTATTCTATGTGACGTATGTTATGAG..............................................................................................................................................................2640.75303000000000
..........................................................................................GTATTCTATGTGACGTATGTTATG................................................................................................................................................................2440.75303000000000
..............................TACAATGTCGTTTCATTTCGTGCG............................................................................................................................................................................................................................2440.75301110000000
...............................ACAATGTCGTTTCATTTCGTGCGT...........................................................................................................................................................................................................................2440.75302100000000
................................................................................................TATGTGACGTATGTTATGAGTGGAA.........................................................................................................................................................2540.75302100000000
........................................................TCACTCA----TTC-AATTCAATTCCATTCGA..........................................................................................................................................................................................2730.67202000000000
.........................................................................TTCAATTCCATTCGAATGTATTCTA................................................................................................................................................................................2530.67201100000000
..................................................TGCGTTTCACTCA----TTC-AATTCAATTCCA...............................................................................................................................................................................................2830.67201100000000
...................................TGTCGTTTCATTTCGTGCGTTTCACC.....................................................................................................................................................................................................................2640.50200200000000
..........................................................................................GTATTCTATGTGACGTATGTTATGAGT.............................................................................................................................................................2740.50202000000000
..............................TACAATGTCGTTTCATTTCGTGC.............................................................................................................................................................................................................................2340.50201010000000
................................................................................................................TGAGTGGAATCATGCAGATGTCTAGTA.......................................................................................................................................2720.50100100000000
................................................................................................TATGTGACGTATGTTATGAGTGGAATC.......................................................................................................................................................2740.50200200000000
.............................ATACAATGTCGTTTCATTTCGTGCGTT..........................................................................................................................................................................................................................2740.50200110000000
.................................................................................................ATGTGACGTATGTTATGAGTGGAA.........................................................................................................................................................2440.50202000000000
.............................ATACAATGTCGTTTCATTTCGTGCGT...........................................................................................................................................................................................................................2640.50200200000000
........................................................................................ATGTATTCTATGTGACGTATGTTATG................................................................................................................................................................2640.50200200000000
...........................................................................................................TGTTATGAGTGGAATCATGCAGATGTC............................................................................................................................................2750.40200200000000
.........................................................................TTCAATTCCATTCGAATGTATTCTATG..............................................................................................................................................................................2730.33101000000000
..................................................TGCGTTTCACTCA----TTC-AATTCAATTCC................................................................................................................................................................................................2730.33100100000000
........................................................TCACTCA----TTC-AATTCAATTCCATTCGAAT........................................................................................................................................................................................2930.33100100000000
........................................................TCACTCA----TTC-AATTCAATTCCATTC............................................................................................................................................................................................2530.33101000000000
..........................................................................TCAATTCCATTCGAATGTATTCTATG..............................................................................................................................................................................2630.33101000000000
.........................................................CACTCA----TTC-AATTCAATTCCATTCGAATG.......................................................................................................................................................................................2930.33101000000000
....................................................................TC-AATTCAATTCCATTCGAATGTAT....................................................................................................................................................................................2530.33100100000000
.......................................................TTCACTCA----TTC-AATTCAATTCCA...............................................................................................................................................................................................2330.33101000000000
............................................................TCA----TTC-AATTCAATTCCATTCGAA.........................................................................................................................................................................................2430.33101000000000
........................................................TCACTCA----TTC-AATTCAATTCCATT.............................................................................................................................................................................................2430.33101000000000
........................................................TCACTCA----TTC-AATTCAATTCCATTCGAAA........................................................................................................................................................................................2930.33100100000000
.........................................................CACTCA----TTC-AATTCAATTCCATT.............................................................................................................................................................................................2330.33101000000000
....................................................................................TCGAATGTATTCTATGTGACGTATGTT...................................................................................................................................................................2740.25101000000000
...........................................................................................TATTCTATGTGACGTATGTTATGAGTG............................................................................................................................................................2740.25101000000000
...............................ACAATGTCGTTTCATTTCGTGCGTTT.........................................................................................................................................................................................................................2640.25101000000000
...............................................................................TCCATTCGAATGTATTCTATGTGA...........................................................................................................................................................................2440.25101000000000
.........................................TTCATTTCGTGCGTTTCACTCA----TTC-AA.........................................................................................................................................................................................................2740.25101000000000
..................................ATGTCGTTTCATTTCGTGCGTT..........................................................................................................................................................................................................................2240.25101000000000
ATGAGTGGA--ATGAGAACC..............................................................................................................................................................................................................................................................1840.25101000000000
.................................AATGTCGTTTCATTTCGTGCGTTTCAC......................................................................................................................................................................................................................2740.25100100000000
...............................................................................................................ATGAGTGGAATCATGCAGATGTCTAGT........................................................................................................................................2740.25101000000000
...............................................................................TCCATTCGAATGTATTCTATGTGACGTA.......................................................................................................................................................................2840.25100100000000
...................................................................................TTCGAATGTATTCTATGTGACGTATG.....................................................................................................................................................................2640.25100100000000
..............................................TTCGTGCGTTTCACTCA----TTC-AATC.......................................................................................................................................................................................................2440.25100100000000
..................................................................................................................AGTGGAATCATGCAGATGTCTAG.........................................................................................................................................2340.25100100000000
.............................................................................................TTCTATGTGACGTATGTTATGAG..............................................................................................................................................................2340.25101000000000
..........................................................................................GTATTCTATGTGACGTATGTTA..................................................................................................................................................................2240.25101000000000
.TGAGTGGA--ATGAGAACCTCTCA-C.......................................................................................................................................................................................................................................................2340.25100100000000
....................................................................................TCGAATGTATTCTATGTGACGTA.......................................................................................................................................................................2340.25101000000000
...............................................................................................................ATGAGTGGAATCATGCAGATGTCTAG.........................................................................................................................................2640.25101000000000
...................................................................................TTCGAATGTATTCTATGTGACGTATGC....................................................................................................................................................................2740.25100100000000
............................................................................................ATTCTATGTGACGTATGTTATGAG..............................................................................................................................................................2440.25101000000000
...........................................................................................TATTCTATGTGACGTATGTTATGAGC.............................................................................................................................................................2640.25100100000000
..............................TACAATGTCGTTTCATTTCGTG..............................................................................................................................................................................................................................2240.25101000000000
........................................TTTCATTTCGTGCGTTTCACTCA----TTC-...........................................................................................................................................................................................................2640.25101000000000
..........................................................................................GTATTCTATGTGACGTATGTTATGA...............................................................................................................................................................2540.25101000000000
....................................................................................TCGAATGTATTCTATGTGACG.........................................................................................................................................................................2140.25101000000000
............................................................................................ATTCTATGTGACGTATGTTATGAGTG............................................................................................................................................................2640.25101000000000
....................................................................................TCGAATGTATTCTATGTGACGTATG.....................................................................................................................................................................2540.25101000000000
.....................................................................................................GACGTATGTTATGAGTGGAATCATGCA..................................................................................................................................................2740.25101000000000
.....................................................................................CGAATGTATTCTATGTGACGTATGTT...................................................................................................................................................................2640.25100100000000
.........................................................................................TGTATTCTATGTGACGTATGTTATGAT..............................................................................................................................................................2740.25100000100000
.............................................................................................TTCTATGTGACGTATGTTATGAGTG............................................................................................................................................................2540.25101000000000
................................................................................................................TGAGTGGAATCATGCAGATGTCTAGT........................................................................................................................................2640.25100010000000
......................................................................................GAATGTATTCTATGTGACGTATGTTA..................................................................................................................................................................2640.25101000000000
..............................................................................TTCCATTCGAATGTATTCTATGTGACG.........................................................................................................................................................................2740.25101000000000
.....................................................................................................GACGTATGTTATGAGTGGAATCATGC...................................................................................................................................................2640.25101000000000
.........................................TTCATTTCGTGCGTTTCACTCA----TTC-...........................................................................................................................................................................................................2540.25101000000000
................................CAATGTCGTTTCATTTCGTGCGT...........................................................................................................................................................................................................................2340.25101000000000
.....................................TCGTTTCATTTCGTGCGTTTCACTCA----...............................................................................................................................................................................................................2640.25101000000000
....................................................................................TCGAATGTATTCTATGTGACGTATGT....................................................................................................................................................................2640.25101000000000
.........................................................................................TGTATTCTATGTGACGTATGTTATGAGC.............................................................................................................................................................2840.25100100000000
.......................................................................................AATGTATTCTATGTGACGTATGTT...................................................................................................................................................................2440.25100100000000
.........................................................................................................TATGTTATGAGTGGAATCATGCAGATG..............................................................................................................................................2750.20101000000000
..............................................................................................................TATGAGTGGAATCATGCAGATGTC............................................................................................................................................2450.20100100000000
droEre2
ATAATAAA---ATA-TACCTATGTA-TCTATACAACTTTGCCCCATTTCGATCAAGGAACTCG----CTC-AATTCAATTCGATTTGAGTGCATTCATTTAACAGTAAGTTGTGAATGATGCCGTGCAGATGTTTAGTATACATA---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:55 AM