ID:

dwi_1188

 Coordinate:

scf2_1100000004516:3916536-3916686 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.3 -4.0 -4.0

Flybase annnotation

CDS [Dwil\GK23703-cds]; exon [dwil_GLEANR_7671:1]; intron [Dwil\GK23703-in]

No Repeatable elements found

mature
  1. scf2_1100000004516:3097609-3097635 +
  2. scf2_1100000004516:3772952-3772978 +
  3. scf2_1100000004516:3813012-3813038 +
  4. scf2_1100000004516:3844042-3844068 +
  5. scf2_1100000004516:3854255-3854281 +
  6. scf2_1100000004516:3869748-3869774 -
  7. dwi_1188  scf2_1100000004516:3916609-3916635 -
  8. scf2_1100000004521:82184-82210 +
  9. scf2_1100000004521:10098492-10098518 +
star
  1. scf2_1100000004513:2870088-2870110 -
  2. scf2_1100000004516:3097577-3097599 +
  3. scf2_1100000004516:3772920-3772942 +
  4. scf2_1100000004516:3773944-3773966 +
  5. scf2_1100000004516:3812980-3813002 +
  6. scf2_1100000004516:3844010-3844032 +
  7. scf2_1100000004516:3854223-3854245 +
  8. scf2_1100000004516:3869784-3869806 -
  9. dwi_1188  scf2_1100000004516:3916645-3916667 -
  10. scf2_1100000004521:82152-82174 +
  11. scf2_1100000004585:2181084-2181106 -
  12. scf2_1100000004585:2191996-2192018 -
  13. scf2_1100000004585:3082205-3082227 +
  14. scf2_1100000004585:3100266-3100288 +
  15. scf2_1100000004585:3700200-3700222 +

Sense Strand Reads

----------------------------------------------####---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATCGTTTCCAAACTAAAGCGGCGAAACCCACTTTAAATACTTTAATGGGTTATATTTTCCTTTATATTATAATTCAAACTTAAAGTGATGAAAACTCAATAGGCAAGCTCGGTCGTGATGAATTGTTTCCAGACTTCAATATTTTCCTTAATACTAACATCCAAAATTAAAGTACGAACTCGATATGCAAGTTCCATCAGGACACATAATTAAATTTCTTGATATATTCCTTAATACCAAAATCCAAAA
*********************************************************************.((...(((...................(((...(((.......))).))))))...))*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M020
head
 V119
head
 M045
female body
 V118
embryo
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGT........................................................................................................................... 27 0 9 69.89 629 620 3 6 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 26 0 9 69.44 625 590 19 16 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTT.......................................................................................................................... 28 0 9 13.44 121 68 53 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATT............................................................................................................................. 25 0 9 2.67 24 19 3 2 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAAT.............................................................................................................................. 24 0 9 1.33 12 11 1 0 0 0
..............................................................................................................TCGGTCGTGATGAATTGTTTCCAGAC................................................................................................................... 26 0 2 1.00 2 0 2 0 0 0
......................................................................................................AGGCAAGCTCGGTCGTGATGAATTGT........................................................................................................................... 26 0 9 1.00 9 7 0 1 1 0
.........................................................................................................................................................................................TATGCAAGTTCCATAAGGACAC............................................ 22 1 1 1.00 1 0 0 1 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGA................................................................................................................................ 22 0 11 0.91 10 10 0 0 0 0
......................................................................................................AGGCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 25 0 9 0.89 8 8 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTG.......................................................................................................................... 28 1 9 0.89 8 8 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTTT......................................................................................................................... 29 0 9 0.78 7 6 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAA............................................................................................................................... 23 0 9 0.67 6 5 1 0 0 0
..........................................................................................TGAAAACTCAATAGGCAAGCTCGGTCG...................................................................................................................................... 27 0 12 0.58 7 6 0 0 1 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGA........................................................................................................................... 27 1 9 0.56 5 5 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTC.......................................................................................................................... 28 1 9 0.56 5 3 2 0 0 0
..........................................................................................................AAGCTCGGTCGTGATGAATTGTTTCCAG..................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
......................................................................................................AGGCAAGCTCGGTCGTGATGAATTGTT.......................................................................................................................... 27 0 9 0.44 4 2 1 0 1 0
.....................................................................................................TAGGCAAGCTCGGCCGTGATGAATTG............................................................................................................................ 26 1 9 0.44 4 4 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATAAATTGT........................................................................................................................... 27 1 9 0.33 3 3 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTA.......................................................................................................................... 28 1 9 0.33 3 1 2 0 0 0
.......................................................................................................................................................................................GGTATGCAAGTTCAATCAGGT............................................... 21 3 3 0.33 1 0 0 1 0 0
............................................................................................................................................................................................................CACATAATTAAATTTCTTGAT.......................... 21 0 3 0.33 1 0 0 0 0 1
.....................................................................................................TAGGCAAGCTCGGTCGCGATGAATTGTT.......................................................................................................................... 28 1 9 0.33 3 1 2 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGC........................................................................................................................... 27 1 9 0.33 3 3 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATG................................................................................................................................. 21 0 12 0.33 4 4 0 0 0 0
.....................................................................................................TAGGCAATCTCGGTCGTGATGAATTGT........................................................................................................................... 27 1 10 0.30 3 3 0 0 0 0
..............................................................................................AACTCAATAGGCAAGCTCGGTCGTGA................................................................................................................................... 26 0 12 0.25 3 3 0 0 0 0
........ACCAAACTAAAGCGGCGAAACCCACTT........................................................................................................................................................................................................................ 27 1 4 0.25 1 0 0 0 1 0
.............................................................................................AAACTCAATAGGCAAGCTCGGTCGTGA................................................................................................................................... 27 0 12 0.25 3 3 0 0 0 0
.....................................................................................................TAGGCAAGCTCGCTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCAGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.22 2 1 1 0 0 0
.....................................................................................................TAGACAAGCTCGGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGACGAATTGT........................................................................................................................... 27 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGCCGTGATGAATTGT........................................................................................................................... 27 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTCATGAATTGTT.......................................................................................................................... 28 1 9 0.22 2 0 2 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCATGATGAATTGT........................................................................................................................... 27 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGCCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGCCGTGATGAATTGTT.......................................................................................................................... 28 1 9 0.22 2 0 2 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTTG......................................................................................................................... 29 1 9 0.22 2 1 1 0 0 0
....................................................................................................CTAGGCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 27 1 9 0.22 2 2 0 0 0 0
.....................................................................................................TAGGCAAACTCGGTCGTGATGAATTGT........................................................................................................................... 27 1 10 0.20 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTT............................................................................................................................ 26 1 10 0.20 2 2 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTTC........................................................................................................................... 27 2 10 0.20 2 2 0 0 0 0
.....................................................................................................TAGGCAATCTCGGTCGTGATGAATTG............................................................................................................................ 26 1 10 0.20 2 2 0 0 0 0
............................................................................................................GCTCGGTCGTGATGAATTGTTTCCA...................................................................................................................... 25 0 11 0.18 2 1 1 0 0 0
...............................................................................................ACTCAATAGGCAAGCTCGGTCGTGA................................................................................................................................... 25 0 12 0.17 2 2 0 0 0 0
..................................................................................TAAAGTGATGAAAACTCAATAGGCAAGCT............................................................................................................................................ 29 0 12 0.17 2 1 1 0 0 0
......TTTCCAAACTAAAGCGGC................................................................................................................................................................................................................................... 18 0 8 0.13 1 0 1 0 0 0
......................................................................................................AGGCAAGCTCGGTCGTGATGAATTGG........................................................................................................................... 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGGGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGCATTG............................................................................................................................ 26 1 9 0.11 1 0 0 1 0 0
.....................................................................................................TAGGCCAGCTCGGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCTGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCCTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTTGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAAATG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCACGCTCGGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCATGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAACTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCTTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGCCAAGCTCGGTCGTGATGAATTGTT.......................................................................................................................... 28 1 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCTGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGGTCGGTCGTGATGCATTG............................................................................................................................ 26 2 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTTC......................................................................................................................... 29 1 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATAAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGAA.......................................................................................................................... 28 2 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCCCGGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGGTCGGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGGGATGAATTGTT.......................................................................................................................... 28 1 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGAT.......................................................................................................................... 28 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATG............................................................................................................................. 25 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTTGGTCGTGATGAATTGTT.......................................................................................................................... 28 1 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGTTA......................................................................................................................... 29 1 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGCTGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCAGTCGTGATGAATTGTT.......................................................................................................................... 28 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGGG.......................................................................................................................... 28 2 9 0.11 1 1 0 0 0 0
.....................................................................................................CAGGCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTC............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTTATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGATCGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTAGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTGAG.......................................................................................................................... 28 2 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCATGCTCGGTCGTGATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGTTCGGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCCGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGATCGGTCGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTTGTGATGAATTGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATCGT........................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTCATGAATTG............................................................................................................................ 26 1 9 0.11 1 1 0 0 0 0
.........................................................................................................CAAGCTCGGTCGCGATGAATTGTTTCCA...................................................................................................................... 28 1 9 0.11 1 1 0 0 0 0
.....................................................................................................TAGGCAAACTCGGTCGTGATGAATTGTT.......................................................................................................................... 28 1 10 0.10 1 1 0 0 0 0
.....................................................................................................TAGGCAATCTCGGTCGTGATGAATTGTT.......................................................................................................................... 28 1 10 0.10 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGTTGAATTGT........................................................................................................................... 27 1 10 0.10 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGAATTTTT.......................................................................................................................... 28 1 10 0.10 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGACTTG............................................................................................................................ 26 1 11 0.09 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGACTTGT........................................................................................................................... 27 1 11 0.09 1 0 1 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGATGACTTGTT.......................................................................................................................... 28 1 11 0.09 1 0 1 0 0 0
.......................................................................................................GGCAAGCTCGGTCGTGATGAATTGTT.......................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0
..........................................................................................TGAAAACTCAATAGGCAAGCTCGGT........................................................................................................................................ 25 0 12 0.08 1 0 0 0 1 0
..............................................................................................AACTCAATAGGCAAGCTCGGTCGTG.................................................................................................................................... 25 0 12 0.08 1 0 0 0 1 0
...................................................................................AAAGTGATGAAAACTCAATAGGCAAG.............................................................................................................................................. 26 0 12 0.08 1 0 0 0 1 0
..................................................................................TAAAGTGATGAAAACTCAATAGGCA................................................................................................................................................ 25 0 12 0.08 1 0 0 0 1 0
.........................................................................................................CAAGCTCGGTCGTGATGAATTGTT.......................................................................................................................... 24 0 12 0.08 1 1 0 0 0 0
.....................................................................................AGTGATGAAAACTCAATAGGCAAGC............................................................................................................................................. 25 0 12 0.08 1 0 0 0 1 0
......................................................................................................CGGCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 25 1 12 0.08 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGAT.................................................................................................................................. 20 0 12 0.08 1 1 0 0 0 0
..........................................................................................TGAAAACTCAATAGGCAAGCTCGG......................................................................................................................................... 24 0 12 0.08 1 1 0 0 0 0
...........................................................................................GAAAACTCAATAGGCAAGCTCGGTCG...................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0
.......................................................................................TGATGAAAACTCAATAGGCAAGCTCG.......................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0
.....................................................................................................TGGGCAAGCTCGGTCGTGATGAATTG............................................................................................................................ 26 1 12 0.08 1 1 0 0 0 0
.....................................................................................................TAGGCAAGCTCGGTCGTGG................................................................................................................................... 19 1 12 0.08 1 0 1 0 0 0
.......................................................................................TGATGAAAACTCAATAGGCAAGCTCGG......................................................................................................................................... 27 0 12 0.08 1 0 0 0 1 0
....................................................................................................CTAGGCAAGCTCGGTCGTGA................................................................................................................................... 20 1 12 0.08 1 1 0 0 0 0
...............................................................................................ACTCAATAGGCAAGCTCGGTC....................................................................................................................................... 21 0 12 0.08 1 1 0 0 0 0
................................................................................................CTCAATAGGCAAGCTCGGTCG...................................................................................................................................... 21 0 12 0.08 1 0 0 0 0 1
.......................................................................................................GGCAAGCTCGGTCGTGATGAATTGT........................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0
.......................................................................................................GGCAAGCTCGGTCGTGATGAATTGTTG......................................................................................................................... 27 1 12 0.08 1 1 0 0 0 0
.........................................................................................................TAGGCTCGGTCGTGATGAATTGT........................................................................................................................... 23 2 14 0.07 1 1 0 0 0 0
.....................................................................TATAATTCAAACTTAAAGTGATG............................................................................................................................................................... 23 0 15 0.07 1 1 0 0 0 0

Anti-sense strand reads

TTTAGCAAAGGTTTGATTTCGCCGCTTTGGGTGAAATTTATGAAATTACCCAATATAAAAGGAAATATAATATTAAGTTTGAATTTCACTACTTTTGAGTTATCCGTTCGAGCCAGCACTACTTAACAAAGGTCTGAAGTTATAAAAGGAATTATGATTGTAGGTTTTAATTTCATGCTTGAGCTATACGTTCAAGGTAGTCCTGTGTATTAATTTAAAGAACTATATAAGGAATTATGGTTTTAGGTTTT
***************************************************************************************************************************.((...(((...................(((...(((.......))).))))))...))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V117
male body
..........................................................................................................................................................................................TCCGTCCAAGGTAGTCCTGT............................................. 20 2 5 0.20 1 0 1 0 0
..................................................................................................................................................................GGTTTCAATTTGATGCTCGA..................................................................... 20 3 8 0.13 1 1 0 0 0
......................CGCTTCGGGAGAAATTTA................................................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0
...................................................................................................................................................AGAATTATGATTGTAGGTTTT................................................................................... 21 1 10 0.10 1 0 0 0 1
.............................................................................................................................ACAAAGGTCGGAAGTTAAA........................................................................................................... 19 2 12 0.08 1 0 0 1 0
...............................................................................................................................................AAAAGGAAGGATGATTGTA......................................................................................... 19 2 19 0.05 1 0 0 1 0
.............................................................................................................................ACAAAGGTCGGAAGTTAA............................................................................................................ 18 2 20 0.05 1 0 0 1 0
...............................................................................................................GCCGGCACTACTTAGCGA.......................................................................................................................... 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004516:3916486-3916736 - dwi_1188 AAATCGTTTCCAAAC-------TAAAGC------------GGCG--AAACCCACTTTAAATACTTTAATGGGTTATATTTTCCTTTATATTATAATTCAAACTTA-----------------------------------------AAGT-GATGAAAACTCAATAGGCAAGCTCGGTCGTGATGAATT---------GTTTCCAGACTTCAATATTTTCCTTAATACTAACATCCAAAATTAAAGTACGAACTCGATATGCAAGTTCCATCAGGACACATAATTAAATTTCTTGATATAT-------TCCTTAATACCAAAAT--CCAAAA
droVir3 scaffold_12875:15492777-15492883 + GGTTGTT---TTCCA-------------AC-----ACTCAAGTGCTCCACTTACTTGGCA-------------AAA--------GTATAT---------------CCGCTGGCGATAAATTTCTTTGTTTTCG--CAGC-------AAAAC-AAT-----------------------------------------------------------------------------------------AAAAACAAATTG-------------------------------------------------------------------A--TGAAAA
droMoj3 scaffold_6500:16048936-16049042 - CTTAGAT---T-----------------------------------------------------------GCTTATATTTTTTTTTAATTTTTAAATGAGATTAA-----------------------------------------AGGC-AATGGCAACAGTATAAATAAATTCTGTTAAGATTTTTTCTGCATTTATTTTC-----------------------------------------------------------------------------------------------------------------------CA--AACTTC
droGri2 scaffold_15126:8162634-8162769 - TTTTTTC---TTAACTAAAA----------------------TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACAATAATAAACTTTAGAGTTTGAGTACTAGCTAAATTTCTTTGCTCAATAATTTTGCTTAACCCAATTTATTGGGAAATATATATGTCCTTAGGATTTAAATAAAAGTGC
dp5 4_group3:905456-905498 - CCTAAAG---G-----------------------------------------------------------GGTTTTGTTTTTTTTTATCATATAATTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AGTTTA
droPer2 scaffold_9823:939-1010 - ACGTCAG---A-----------------------------------------------------------GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGATTTTATTTGGTAAAATGCGAGGTTTATATACAAGTTCTA----------------------------------------------------TG--AGTATA
droAna3 scaffold_13266:19596577-19596620 + ATATTTT-----------------------------------------------------------AATATATTATATTTTAATATATATTCTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CAAATT
droBip1 scf7180000392940:31111-31187 + AAATTTT---TTAAAGACTATTT--------------------TTTTAAGGCTT---------TTTAAGCCTTTTTTTTTTTTTATTAAATAAACTTTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CAAAAT
droKik1 scf7180000302592:1856082-1856160 - AACAAGTTTCCATAA---------------------CAAAGGCATCCATCCCACTTTAATTACTTTT--------------------------------------AGGTTTGTGCTTTTCTTTTCTGTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ATTAAA
droFic1 scf7180000451693:6568-6648 + CAAAGCC---CCCTTG------------AT-----A--------------------------GTCCAATGGAGTACATTTTTCTTCAAATTAAGAATTCACCTGA-----------------------------------------CAAG-AGTAAAATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TA--ATAGGC
droEle1 scf7180000490988:16812-16883 - AAACCAC---TTAAC-------------AT-----A--------------------------TTTTAATGGTTTACATTTTTTTATTTGATGTATCTTGTACTTA-----------------------------------------AATGT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTAAAA
droRho1 scf7180000780093:129451-129513 + GTTACAG----------------------------------------------------------------------TTTTTGTCTTAATTATATTTTAAACTTA-----------------------------------------AAGAC-AAGACAACTGAATT-----------------------------------------------------------------------------------------G------------------------------------------------------------------CT--AATCTC
droBia1 scf7180000301589:35019-35093 + GATTTATTTTCAAAC--------CGTTC------------AGAAAT-----TGGTT-----------------TAA--------ATATATTAAGTCCAAAACTAA-------------------------------------------------------------------------------------------------------------------------------------------AATATGAATTCAAT--------------------------------------------------------------------ATATAA
droTak1 scf7180000415912:253232-253367 - TGTAATT---TTAAT-------------TTAATTTATTGAACTGTTGAACTCAA-----TAAATATT--------------------------------------AGTATTGCAATTATAATTTGTTTTTTCATTAAATATATTTAAATAT-AT---------------------------------------------------------TTTATTTTCTTTAATACTAACAACGAAAATAAAAG-----------------------------------------------------------------------------T--ACAAAC
droEug1 scf7180000407600:40726-40802 - TTATTTC---CAAAGGGAAATTTAAATT------------GGTG--AAATCCAATATTAATCCACTATTCAAATATATATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--ATTATA
dm3 chr3L:11892599-11892643 + CACAATT---AAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGATTTAT-------TTCTTAATCACAAGGA--ACAACA
droSec2 scaffold_40:282937-283010 + GTTATTT---TTAAT-------------AA----------AGCGTTTT---AATTCTGTATTCTTTAATAATATATATTTTCCATTGT----------------------------------------------------------AATAT-AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--AAAATT
droYak3 v2_chrUn_232:3243-3310 + TCCTGTC---CCAAT-------CAACTC------------GGTGATTATCTCGTTTTAAATCCTTTATTGGGCTATGTATACCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAT
droEre2 scaffold_4845:9062816-9062867 + TTAAATT---GTAAT---------------------------------------------------------------------CTATATTATTGTTGAAACTTA-----------------------------------------AATC-GATTAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAATCGTTTCCAAAC-------TAAAGC------------GGCG--AAACCCACTTTAAATACTTTAATGGGTTATATTTTCCTTTATATTATAATTCAAACTTA-----------------------------------------AAGT-GATGAAAACTCAATAGGCAAGCTCGGTCGTGATGAATT---------GTTTCCAGACTTCAATATTTTCCTTAATACTAACATCCAAAATTAAAGTACGAACTCGATATGCAAGTTCCATCAGGACACATAATTAAATTTCTTGATATAT-------TCCTTAATACCAAAAT--CCAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GT....................................................................................................................................27969.896293062006
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------G.....................................................................................................................................26969.44625190590016
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTT...................................................................................................................................28913.441215306800
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------......................................................................................................................................2592.6724301902
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAAT................................................................................................................................................2491.3312101100
.............................................................................................................................................................................TCGGTCGTGATGAATT---------GTTTCCAGAC............................................................................................................................2621.00220000
.....................................................................................................................................................................AGGCAAGCTCGGTCGTGATGAATT---------GT....................................................................................................................................2691.00901701
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGA..................................................................................................................................................22110.9110001000
.....................................................................................................................................................................AGGCAAGCTCGGTCGTGATGAATT---------G.....................................................................................................................................2590.89800800
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTG...................................................................................................................................2890.89800800
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTTT..................................................................................................................................2990.78710600
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAA.................................................................................................................................................2390.67610500
.........................................................................................................................................................TGAAAACTCAATAGGCAAGCTCGGTCG........................................................................................................................................................27120.58701600
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GA....................................................................................................................................2790.56500500
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTC...................................................................................................................................2890.56520300
.........................................................................................................................................................................AAGCTCGGTCGTGATGAATT---------GTTTCCAG..............................................................................................................................2820.50100100
.....................................................................................................................................................................AGGCAAGCTCGGTCGTGATGAATT---------GTT...................................................................................................................................2790.44411200
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTA...................................................................................................................................2890.33320100
....................................................................................................................................................................................................................................................................................CACATAATTAAATTTCTTGAT...................................2130.33100010
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GC....................................................................................................................................2790.33300300
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATG...................................................................................................................................................21120.33400400
.............................................................................................................................................................AACTCAATAGGCAAGCTCGGTCGTGA.....................................................................................................................................................26120.25300300
............................................................................................................................................................AAACTCAATAGGCAAGCTCGGTCGTGA.....................................................................................................................................................27120.25300300
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTTG..................................................................................................................................2990.22210100
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------T.....................................................................................................................................26100.20200200
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------TC....................................................................................................................................27100.20200200
...........................................................................................................................................................................GCTCGGTCGTGATGAATT---------GTTTCCA...............................................................................................................................25110.18210100
..............................................................................................................................................................ACTCAATAGGCAAGCTCGGTCGTGA.....................................................................................................................................................25120.17200200
.......................................................................................................TA-----------------------------------------AAGT-GATGAAAACTCAATAGGCAAGCT..............................................................................................................................................................29120.17210100
......TTTCCAAAC-------TAAAGC------------GGC.................................................................................................................................................................................................................................................................................................1880.13110000
.....................................................................................................................................................................AGGCAAGCTCGGTCGTGATGAATT---------GG....................................................................................................................................2690.11100100
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTTC..................................................................................................................................2990.11110000
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GAA...................................................................................................................................2890.11110000
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATG---------......................................................................................................................................2590.11100100
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GTTA..................................................................................................................................2990.11110000
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GGG...................................................................................................................................2890.11100100
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------C.....................................................................................................................................2690.11100100
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGATGAATT---------GAG...................................................................................................................................2890.11100100
......................................................................................................................................................................GGCAAGCTCGGTCGTGATGAATT---------GTT...................................................................................................................................26120.08100100
.........................................................................................................................................................TGAAAACTCAATAGGCAAGCTCGGT..........................................................................................................................................................25120.08101000
.............................................................................................................................................................AACTCAATAGGCAAGCTCGGTCGTG......................................................................................................................................................25120.08101000
........................................................................................................A-----------------------------------------AAGT-GATGAAAACTCAATAGGCAAG................................................................................................................................................................26120.08101000
.......................................................................................................TA-----------------------------------------AAGT-GATGAAAACTCAATAGGCA..................................................................................................................................................................25120.08101000
........................................................................................................................................................................CAAGCTCGGTCGTGATGAATT---------GTT...................................................................................................................................24120.08100100
...................................................................................................................................................AGT-GATGAAAACTCAATAGGCAAGC...............................................................................................................................................................25120.08101000
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGAT....................................................................................................................................................20120.08100100
.........................................................................................................................................................TGAAAACTCAATAGGCAAGCTCGG...........................................................................................................................................................24120.08100100
..........................................................................................................................................................GAAAACTCAATAGGCAAGCTCGGTCG........................................................................................................................................................26120.08100100
.....................................................................................................................................................T-GATGAAAACTCAATAGGCAAGCTCG............................................................................................................................................................26120.08100100
....................................................................................................................................................................TAGGCAAGCTCGGTCGTGG.....................................................................................................................................................19120.08110000
.....................................................................................................................................................T-GATGAAAACTCAATAGGCAAGCTCGG...........................................................................................................................................................27120.08101000
..............................................................................................................................................................ACTCAATAGGCAAGCTCGGTC.........................................................................................................................................................21120.08100100
...............................................................................................................................................................CTCAATAGGCAAGCTCGGTCG........................................................................................................................................................21120.08100010
......................................................................................................................................................................GGCAAGCTCGGTCGTGATGAATT---------GT....................................................................................................................................25120.08100100
......................................................................................................................................................................GGCAAGCTCGGTCGTGATGAATT---------GTTG..................................................................................................................................27120.08100100
..........................................................................................TATAATTCAAACTTA-----------------------------------------AAGT-GATG.................................................................................................................................................................................23150.07100100
droVir3
GGTTGTT---TTCCA-------------AC-----ACTCAAGTGCTCCACTTACTTGGCA-------------AAA--------GTATAT---------------CCGCTGGCGATAAATTTCTTTGTTTTCG--CAGC-------AAAAC-AAT-----------------------------------------------------------------------------------------AAAAACAAATTG-------------------------------------------------------------------A--TGAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CTTAGAT---T-----------------------------------------------------------GCTTATATTTTTTTTTAATTTTTAAATGAGATTAA-----------------------------------------AGGC-AATGGCAACAGTATAAATAAATTCTGTTAAGATTTTTTCTGCATTTATTTTC-----------------------------------------------------------------------------------------------------------------------CA--AACTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTTTTC---TTAACTAAAA----------------------TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACAATAATAAACTTTAGAGTTTGAGTACTAGCTAAATTTCTTTGCTCAATAATTTTGCTTAACCCAATTTATTGGGAAATATATATGTCCTTAGGATTTAAATAAAAGTGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
CCTAAAG---G-----------------------------------------------------------GGTTTTGTTTTTTTTTATCATATAATTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AGTTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACGTCAG---A-----------------------------------------------------------GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGATTTTATTTGGTAAAATGCGAGGTTTATATACAAGTTCTA----------------------------------------------------TG--AGTATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................TTTCGTACTGATTTTATTTGGTAAAATG....................................................................................28200.459090000
............................................................................................................................................................................................................................TTTCGTACTGATTTTATTTGGTAAA.......................................................................................25200.357070000
........................................................................................................................................................................................................................................................CGAGGTTTATATACAAGTTCTA----------------------------------------------------TG--AG....26150.335050000
............................................................................................................................................................................................................................TTTCGTACTGATTTTATTTGGTA.........................................................................................23200.255050000
.............................................................................................................................................................................................................................TTCGTACTGATTTTATTTGGTAAAA......................................................................................25200.204040000
....................................................................................................................................................................................................................................TGATTTTATTTGGTAAAATGCGAGGT..............................................................................26130.152020000
...TCAG---A-----------------------------------------------------------GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGATTT..................................................................................................25200.153030000
....................................................................................................................................................................................................................................TGATTTTATTTGGTAAAATGCGAGG...............................................................................25150.132020000
.......................................................................................................................................................................................................................................TTTTATTTGGTAAAATGCGAGGTT.............................................................................24150.132020000
.................................................................................................................................................................................................................................TACTGATTTTATTTGGTAAAATGCGAGG...............................................................................28150.132020000
.................................................................................................................................................................................................................................................TAAAATGCGAGGTTTATATACAAGT..................................................................25160.132020000
............................................................................................................................................................................................................................TTTCGTACTGATTTTATTTGGTAAAAT.....................................................................................27200.102101000
............................................................................................................................................................................................................................................................GTTTATATACAAGTTCTA----------------------------------------------------TG--AGTA..24130.081010000
............................................................................................................................................................................................................................................................GTTTATATACAAGTTCTA----------------------------------------------------TG--AGT...23130.081010000
.....................................................................................................................................................................................................................................GATTTTATTTGGTAAAATGCGAGGTT.............................................................................26130.081010000
...................................................................................................................................................................................................................................................................TACAAGTTCTA----------------------------------------------------TG--AGTAT.18130.081010000
.............................................................................................................................................................................................................................................TTGGTAAAATGCGAGGTTTATATA.......................................................................24150.071010000
.........................................................................................................................................................................................................................................TTATTTGGTAAAATGCGAGGTTTATA.........................................................................26150.071010000
.........................................................................................................................................................................................................................................................GAGGTTTATATACAAGTTCTA----------------------------------------------------TG--AG....25150.071010000
...............................................................................................................................................................................................................................................................TATATACAAGTTCTA----------------------------------------------------TG--AG....19150.071010000
..............................................................................................................................................................................................................................................TGGTAAAATGCGAGGTTTATATACAAG...................................................................27150.071010000
..........................................................................................................................................................................................................................................TATTTGGTAAAATGCGAGGTTTATA.........................................................................25150.071010000
........................................................................................................................................................................................................................................................CGAGGTTTATATACAAGTTCTA----------------------------------------------------TG--AGA...27170.061010000
.............................................................................................................................................................................................................................................................TTTATATACAAGTTCTA----------------------------------------------------TG--AGA...22170.061010000
........................................................................................................................................................................................................................................................CGAGGTTTATATACAAGTTC................................................................20180.061010000
............................................................................................................................................................................................................................TTTCGTACTGATTTTATTTGGT..........................................................................................22200.051010000
.....AG---A-----------------------------------------------------------GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGATT...................................................................................................22200.051010000
..........................................................................................................................................................................................................................TCTTTCGTACTGATTTTATTTG............................................................................................22200.051010000
.............................................................................................................................................................................................................................TTCGTACTGATTTTATTTGGTAAAATG....................................................................................27200.051010000
......................................................................GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGAT....................................................................................................18200.051100000
.CGTCAG---A-----------------------------------------------------------GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGATA...................................................................................................26200.051010000
...TCAG---A-----------------------------------------------------------GTTT------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCGTACTGATTTTAT...............................................................................................28200.051010000
...............................................................................................................................................................................................................................CGTACTGATTTTATTTGGTAAAA......................................................................................23200.051010000
............................................................................................................................................................................................................................TTTCGTACTGATTTTATTTGGTAAAA......................................................................................26200.051100000
..........................................................................................................................................................................................................................TCTTTCGTACTGATTTTATTTGGTAAAAT.....................................................................................29200.051010000
..........................................................................................................................................................................................................................TCTTTCGTACTGATTTTATTTGGTAA........................................................................................26200.051010000
droAna3
ATATTTT-----------------------------------------------------------AATATATTATATTTTAATATATATTCTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CAAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAATTTT---TTAAAGACTATTT--------------------TTTTAAGGCTT---------TTTAAGCCTTTTTTTTTTTTTATTAAATAAACTTTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
AACAAGTTTCCATAA---------------------CAAAGGCATCCATCCCACTTTAATTACTTTT--------------------------------------AGGTTTGTGCTTTTCTTTTCTGTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ATTAAASizeHit CountTotal NormTotal
No Reads
droFic1
CAAAGCC---CCCTTG------------AT-----A--------------------------GTCCAATGGAGTACATTTTTCTTCAAATTAAGAATTCACCTGA-----------------------------------------CAAG-AGTAAAATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TA--ATAGGCSizeHit CountTotal NormTotal
No Reads
droEle1
AAACCAC---TTAAC-------------AT-----A--------------------------TTTTAATGGTTTACATTTTTTTATTTGATGTATCTTGTACTTA-----------------------------------------AATGT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTAAAASizeHit CountTotal NormTotal
No Reads
droRho1
GTTACAG----------------------------------------------------------------------TTTTTGTCTTAATTATATTTTAAACTTA-----------------------------------------AAGAC-AAGACAACTGAATT-----------------------------------------------------------------------------------------G------------------------------------------------------------------CT--AATCTCSizeHit CountTotal NormTotal
No Reads
droBia1
GATTTATTTTCAAAC--------CGTTC------------AGAAAT-----TGGTT-----------------TAA--------ATATATTAAGTCCAAAACTAA-------------------------------------------------------------------------------------------------------------------------------------------AATATGAATTCAAT--------------------------------------------------------------------ATATAASizeHit CountTotal NormTotal
No Reads
droTak1
TGTAATT---TTAAT-------------TTAATTTATTGAACTGTTGAACTCAA-----TAAATATT--------------------------------------AGTATTGCAATTATAATTTGTTTTTTCATTAAATATATTTAAATAT-AT---------------------------------------------------------TTTATTTTCTTTAATACTAACAACGAAAATAAAAG-----------------------------------------------------------------------------T--ACAAACSizeHit CountTotal NormTotal
No Reads
droEug1
TTATTTC---CAAAGGGAAATTTAAATT------------GGTG--AAATCCAATATTAATCCACTATTCAAATATATATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--ATTATASizeHit CountTotal NormTotal
No Reads
dm3
CACAATT---AAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGATTTAT-------TTCTTAATCACAAGGA--ACAACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSec2
GTTATTT---TTAAT-------------AA----------AGCGTTTT---AATTCTGTATTCTTTAATAATATATATTTTCCATTGT----------------------------------------------------------AATAT-AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--AAAATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCCTGTC---CCAAT-------CAACTC------------GGTGATTATCTCGTTTTAAATCCTTTATTGGGCTATGTATACCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................TATCTCGTTTTAAATCCTTTATTGGG....................................................................................................................................................................................................................................................................2644.2517000000000017
.............................................TTATCTCGTTTTAAATCCTTTATT.......................................................................................................................................................................................................................................................................2440.25101000000000
.............................................TTATCTCGTTTTAAATCCTTTATTGG.....................................................................................................................................................................................................................................................................2640.25101000000000
.............................................TTATCTCGTTTTAAATCCTTTATTGGG....................................................................................................................................................................................................................................................................2740.25101000000000
....................................................GTTTTAAATCCTTTATTG......................................................................................................................................................................................................................................................................1840.25101000000000
..............................................TATCTCGTTTTAAATCCTTTATTGG.....................................................................................................................................................................................................................................................................2540.25101000000000
droEre2
TTAAATT---GTAAT---------------------------------------------------------------------CTATATTATTGTTGAAACTTA-----------------------------------------AATC-GATTAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:57 AM