ID:

dwi_1155

 Coordinate:

scf2_1100000004516:2323162-2323263 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.3 -5.4

Flybase annnotation

CDS [Dwil\GK23912-cds]; exon [dwil_GLEANR_7866:5]; CDS [Dwil\GK23912-cds]; exon [dwil_GLEANR_7866:6]; intron [Dwil\GK23912-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------##################################################
CAAGGAACGCAAAGAGAAGAAACGTGAGAAATTGAGGAATTTGGCTGGCGGCGAAACGAATTTTACCACCACTTCGAATGCCATTGGCAGCAATAGCAATGCCATTTGTGGTGTTCCCAGTGGTGCTACTAATGCCACCACCAGCACGACAACAACAGCAACATCAACAACCACTACCAACGATATCAGCAGCGAGAAACTG
****************************************************..........................(((.((((....)))).)))....**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 M020
head
 V119
head
................................TGGGGAGTTTGGCTGGCGG....................................................................................................................................................... 19 2 3 31.33 94 72 22 0 0 0
...............................GTGGGGAGTTTGGCTGGCGG....................................................................................................................................................... 20 3 11 18.55 204 174 29 1 0 0
...............................GTGGGGAGTTTGGCTGGCGGC...................................................................................................................................................... 21 3 4 16.75 67 35 31 0 0 1
................................TGGGGAGTTTGGCTGGCGGC...................................................................................................................................................... 20 2 3 11.33 34 18 14 2 0 0
................................TGGGGAGTTTGGCTGGCGGCA..................................................................................................................................................... 21 3 6 5.17 31 27 4 0 0 0
.................................GGGGAGTTTGGCTGGCGG....................................................................................................................................................... 18 2 8 2.63 21 15 6 0 0 0
.............................AATTGAGGAATTTGGCTGGCGGC...................................................................................................................................................... 23 0 1 2.00 2 0 1 1 0 0
..................................................................................ATTGGCAGCAATAGCAATGC.................................................................................................... 20 0 1 2.00 2 0 0 2 0 0
..............................ATTGAGGAATTTGGCTGGC......................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0
...........................GAAATTGAGGAATTTGGCTGGCGGC...................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0
.............................AATTGAGGAATTTGGCTGGC......................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0
................................TGGGGAGTTTGGCGGGCGGC...................................................................................................................................................... 20 3 7 1.29 9 4 5 0 0 0
......................................................................................................................................................................................ATATCAGCAGCGAGAAACT. 19 0 1 1.00 1 1 0 0 0 0
............................AAATTGAGGAATTTGGCTGGC......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
....................................................GAAACGAATTTTACCACCACTTC............................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
...........................GAAATTGAGGAATTTGGCTGGC......................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
....................................................................CCACTTCGAATGCCATTGGCA................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0
...............................................................................................................................ACTAATGCCACCACCAGCACGACAACA................................................ 27 0 1 1.00 1 1 0 0 0 0
...........AAGAGAAGAAACGTGAGAAATT......................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.........................................................GAATTTTACCACCACTTCG.............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
............................................................................................................................GCTACTAATGCCACCACCAGCA........................................................ 22 0 1 1.00 1 0 0 1 0 0
.................................GGGGAGTTTGGCTGGCGGC...................................................................................................................................................... 19 2 5 1.00 5 4 1 0 0 0
............................................................................................................TGGTGTTCCCAGTGGTGC............................................................................ 18 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................ACTACCAACGATATCAGCAGC......... 21 0 1 1.00 1 0 0 1 0 0
............................AAATTGAGGAATTTGGCTGGCGGC...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..AGGAACGCAAAGAGAAGAAACGTGA............................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0
.........................GAGAAATTGAGGAATTTGGCTGGC......................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0
..............AGAAGAAACGTGAGAAATT......................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
......................................................................................................CATTTGTGGTGTTCCCAGTGGTG............................................................................. 23 0 1 1.00 1 0 1 0 0 0
.......................................................................................................ATTTGTGGTGTTCCCAGTG................................................................................ 19 0 1 1.00 1 0 0 1 0 0
.................................GAGGAATTTGGCTGGCGGC...................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
.......................................................................................................ATTTGTGGTGTTCCCAGTGG............................................................................... 20 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................CTACCAACGATATCAGCAGC......... 20 0 1 1.00 1 0 1 0 0 0
.....................................AATTTGGCTGGCGGCGAAACG................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................CATTTGTGGTGTTCCCAGTGGT.............................................................................. 22 0 1 1.00 1 1 0 0 0 0
.AAGGAACGCAAAGAGAAGA...................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
.................................................................................................................................................................................CAACGATATCAGCAGCGAG...... 19 0 1 1.00 1 0 0 1 0 0
..................................GGGAGTTTGGCTGGCGGC...................................................................................................................................................... 18 2 8 1.00 8 2 6 0 0 0
...........................................................................................................................TGCTACTAATGCCACCACCA........................................................... 20 0 1 1.00 1 1 0 0 0 0
......................................................................................................CATTTGTGGTGTTCCCAGTG................................................................................ 20 0 1 1.00 1 1 0 0 0 0
................................TGGGGAGTTTGGCTGGGGGC...................................................................................................................................................... 20 3 13 0.62 8 8 0 0 0 0
.............................AGTTGGGGAGTTTGGCTGGCGG....................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
..............................AGTGGGGAGTTTGGCTGGCGGC...................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
...............................TTGGGGAGTTTGGCTGGCGG....................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
.............................AGTTGGGGAGTTTGGCTGGCG........................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0
....................................GAATTTGGGTAGGGGCGAAA.................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0
..............................GTTGGGGAGTTTGGCTGGCGG....................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0
.................................GGGGAGTTTGGCTGGGGGCG..................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
...............................GTGGGGATTTTGGCTGGCGG....................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
.............................................................................ATGCCATTGGCCGCAGTAGA......................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
................................TTGGGAGTTTGGCTGGCGGC...................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
..............................................................................................................GTGTTTCCAGTGGTGCAATT........................................................................ 20 3 19 0.05 1 1 0 0 0 0
....................................GAATTTGGGTTGGGGCGAAA.................................................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0
..............................GGTGAGGAGTTTGGCTGGC......................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
................................TGGGGAGTTTGTCTGGCGG....................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GTTCCTTGCGTTTCTCTTCTTTGCACTCTTTAACTCCTTAAACCGACCGCCGCTTTGCTTAAAATGGTGGTGAAGCTTACGGTAACCGTCGTTATCGTTACGGTAAACACCACAAGGGTCACCACGATGATTACGGTGGTGGTCGTGCTGTTGTTGTCGTTGTAGTTGTTGGTGATGGTTGCTATAGTCGTCGCTCTTTGAC
****************************************************************************************************..........................(((.((((....)))).)))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V117
male body
..................................................................................................................................TTACGATAGGGGTCGTGCTG.................................................... 20 3 4 0.75 3 3 0 0
........................................................................................................................................................................................TAGTCGTGGATCTTTGAC 18 2 3 0.33 1 0 1 0
...........................................................TTAAATGGTGGTGAATCT............................................................................................................................. 18 2 15 0.13 2 1 0 1
....................................................................................................................................ACGGGGGTGGGCGTGCTG.................................................... 18 2 8 0.13 1 1 0 0
......................................................................................................................................GGTGGGGGTGGTGCTGTTGTT............................................... 21 2 11 0.09 1 0 0 1
..........................................................................................................ACACGACACGGGTCGCCAC............................................................................. 19 3 12 0.08 1 1 0 0
....................................................................................................................................................TGTTGTTGTCGTTGTAGTT................................... 19 0 18 0.06 1 0 0 1
...................................................................................................................................TAAGGTGGTAGTCGTGCGG.................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004516:2323112-2323313 + dwi_1155 CAAGGAACGCAAAGAGAAGAAACGTGAGAAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGCGGCGAAACGAATTTTACCACCACTTCGAATGCCATT----------------------GGCAGCAATAGCAATGCCA--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTGGTGCTACTAAT-------G------CCA------CCACCAGCACG-------------------------------------------------------------ACAACAA------C---AGCAACATCAACA----------------------------------ACCACT---ACCAAC----G---ATATCAG----------CAGCGAGAAACTG
droVir3 scaffold_12875:15671131-15671342 + TAAAAAACAGAACGAAAAAAATTTGAGTAAGCAGTT-GGCTGTC-GGCAGTTTATGACCTTTTCGAAAGGTGGCGACAGGCTGCTGATTGCAGCTTAGCCTTAATAATGGCCCACAAAACGGTTTTAGACCAGC---------------------------T---------------AGTAAAGCTTT---AAA----------------------------TAA-----------------------CCT---TAAA-----------------------------------------------------------------------------------------------------------------GTA----ACAGCAACAGCAAC------------------------------------------------------------------------AGCAA------C---AACAACATC------------------------------------------------------------------AACAAACATCAGAGTCGAATAGC--
droMoj3 scaffold_6473:14568994-14569171 + GAAAAGGGGAAAAAAGAGCAACTGCT-GAGGACGAGGCGAACAA-----------------------------------------------------------------------------------------------------------------CAACTATGAATAAGGCAGGCGGA-------------------ACAGCCGCACGA--------------------------------------------------TTCG----------------------CTA--------------------AAT----------------------CCGAATTGAAATGT--------TGCCGCC---TCG----GCTAGCAGCAACAGCAAC------------------------------------------------------------------------AACAA------C---AACAACATGTTAA----------------------------------ACTAGC---AACAAC----A---ACAACAG--------------CAACTATAA
droGri2 scaffold_14846:183762-183975 - CAAAGGAGGCAATAAAAA---ATTCAAAAACTTGAA---TCTGGCC-------------------------------------------------------------------------------------AGAGCGGAGGTGATGTTGCCCTCAACGTCGAAACTCA------------------------AGCAACAACAACAATTGCAACTTAATTGCCC--------------------------------------TTC-----------------------ATC--------------------AT---------------------------------------CCTC-------------------------------------------------------------------ATCGTCAACTGCTGCTGCTGC---TGTTGCTGCTCCTACGACAACGA------CAAC---AACAGCAGCA---A------CTATAGCGAGTG--CGAGTGC--AA-CGCT----------------------GG--------------CAGCGA-CG
dp5 4_group1:4426724-4426940 - dps_1419 CAAGGAGCGCAAGGAGAAGAAACGCGAGAAGATGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGAC----------------------------AAACACCATCGCTG-----------------------------GGTCTGCCACCA-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCACCATCACACATGAGCAGCGGCAGCAGCAGC-ACACCAGCTGCACCGCCAGCAGCAA------CAGC---AGCAGCAGCG---GCTGT------G---------CCGGTTC-CGTCTGCCGGCAGCAACGATCTCGGGGAAAAG-----------CTGGAGAAGCTA
droPer2 scaffold_5:783361-783577 + CAAGGAGCGCAAGGAGAAGAAACGCGAGAAGATGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGAC----------------------------AAACACCATCGCTG-----------------------------GGTCTGCCACCA-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCACCACCACACATGAGCAGCGGCAGCAGCAGC-ACACCAGCTGCACCGCCAGCAGCAA------CAGC---AGCAGCAGCG---GCTGT------G---------CCGGTTC-CGTCTGCCGGCAGCAACGATCTCGGGGAGAAG-----------CTGGAGAAGCTA
droAna3 scaffold_12943:4205269-4205395 - CAAGGAGCGGAAGGAGAAGAAGCGAGAGAAGCTGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---GAGGC----------------------------CAA-----------------------CAG---CACCACT----------------------------------------------------------------------------------------------------------GCGAACA----GCAGCAACTCCACCA-------------------------------------------------------------------------------------------------------------CCAA---------------CTC-CGCCACC---ACCAAT----G---ATGTGAC----------TTCAGAGAAACTC
droBip1 scf7180000395973:424936-425065 - CAAGGAGCGCAAGGAGAAGAAGCGCGAGAAGCTGAGGAATCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---GAGGC----------------------------CAA-----------------------CAGTGCCACCACA----------------------------------------------------------------------------------------------------------GCGATTG----GCGGCAACTCCACCG-------------------------------------------------------------------------------------------------------------CCAA---------------CTC-CGCCACA---CCCAAC----G---ATGTGAC----------ATCCGAGAAGCTC
droKik1 scf7180000302273:156753-156888 + TAAGGAGCGCAAGGAGAAGAAGCGCGAGAAGCTGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CA---GAGAC----------------------------CAACGCAACCGTTG-----------------------------GAAGCG-----------------------------------------------------------------------------------------------------------------------------TGACCACAGTA--A-----------------------------------------------------------------A---CACAA------------------CCAA------TCCTCC---AAT-GGTTACA------AAT----GAGGTGATTAG----------CTCTGAGAAACTT
droFic1 scf7180000453316:88080-88249 + GAG----TTCAATGCAAAGACATGTGCATAAATGAAGAGCTACA--------------------------------------------------------------------------------------------------------------------------------------------GC---CAATT----------------------------TAATTTAAACGCCG---------CCG-------------CCC-CGCCCGCCATTG--------CATACGACAATTCAGTTGTAAATCCAAACGG-------------------TTCGCCTTTAGA----------------------------------T------------------------------------------CAGCAACAACAAC------------------------------AA------C---AGC---------A---A------CAACAACAAGCG--------------CAGC----------------------AG--------------CAGCAG-CG
droEle1 scf7180000490216:115762-115879 + CAAGGAGCGGAAGGAAAAGAAACGCGAGAAACTGAGGAATATGG--------------------------------------------------------------------------------------------------------------------------------------------CA---GATAC----------------------------CAA-----------------------TAACAGCACCACC----------------------------------------------------------------------------------------------------------GTAAG-------C---------GCCA-------------------------------------------------------------------------------------------------------------CTAA---------------TAC-TCCTACC---ACCAAT----G---ATATTAG----------CTTGGAGAAATTG
droRho1 scf7180000777787:21642-21805 - AACAGACAACAAGCGAAAGCAACAACAACAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGGGCGTTGGCT-------------C-----------ACCAGGCAACCACACAC--------------------AATCACAC----------------------------------------------------------------------------------------------------------CAACAACAGCAGCAACAGCAACAACAGCTGCATCA-------CAACAACAACACC---AGCAACAACAGCAAT--T------G---------CCACCAC--AGTCACC----------------------AG--------------CAGCAACAA
droBia1 scf7180000301665:2004-2129 - CCACCAACATCGGCAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCTACAACATCGCCAGCTGAAACGCCC---------------------------------------------------------------------------------------------------------------------------------AAAGGCGCCGCTAA-------------CATCA------------------------------------------------------------------------ACGCCAGCGCCAA------C---AACAACATCGGCA----------------------------------GCCAGC---GCCAAC----A---ACATCGG----------CAGCCAGCAAC--
droTak1 scf7180000414118:36918-37089 - AC------CCAAAAAAACGAAACGAAAGAAAATAAGAGAGGCGG--------------------------------------------------------------------------------------------------------------------------------------------CTACGAATTC----------------------------GAA----------------------------------------------------------TATGTTC--------------------AATCATACCAAACTTTTTTCAGATTTTTGATTTTGTATCCCCATCATCACCACCACC-------A------CTA------CCACCACAACT-------------------------------ATAAC------------------------------AA------C---AAC---------A---A------CCAG---------------TAC-AAGCACC---AACAAC----A---ACATCAA----------C------------
droEug1 scf7180000409154:180218-180329 + CAAGGAAAGAAAAGAAAAGAAACGTGAGAAGTTGCGGAATATAA--------------------------------------------------------------------------------------------------------------------------------------------CG---GAGAT----------------------------CAA-----------------------TAGCATCACTAC--------------------------------------------------------------------------------------------------------------------------------TATAG-------------------------------------------------------------------------------------------------------------GCAA---------------TTC-GCCTACC---AGCAAT----G---ATTTAAG----------TTCTGAAAAATTA
dm3 chr2L:11255602-11255739 + GATGCAGCAGCAGGAGCAGCAGCAGCGTCAACTGTTTGACC------------------------------------------------------------------------------------------AGC-------------------------------------------GGCGCAGCCAC---CAC----------------------------CAG-----------------------CCT---CACCATC----------------------------------------------------------------------------------------------------------ACCACCA----GCCGCATCATCATCG---CCACCACC------------------------------------------------------------------------------ATCAT----C---A--CC-AGCAA------CG--------------CATC---AACAAC-------------AA--------------TAACAATAA
droSim2 3r:15722632-15722820 + AATGAAAGA-AAAAAAAAAAAACGAAAGAAAATAAGAGACGCCA----------------------------------------------------------------------------------------G---------------------------------------------------CTACGAATTC----------------------------GAA----------------------------------------------------------TATGTTC--------------------AATCATACCAAACTTTTTTCAGATTTTTGATTTTGTATCCCCATCATCACCACCACC-------A------CTA------CCACCACAACT-------------------------------------------------------------------ACAACAAC---AACAAC------A---A------CCAG---------------TAC-AAGCACC---AACAAC----A---ACATCAA--------------CAACAACAA
droSec2 scaffold_3:6259721-6259888 - AATTTGAATTT---GAACCAAAAGCGTTTGGCCGGTGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-----------------------------A--------------------------------------------------------------------------------ATCCCCTGCAGCAACAA---------------------------------------------CAACAGCATC-CACAGCAACAGCTTCAACAAC------AACAACAACAACAACAACAACAA------CAAC---AACAACAACA---ACAAC------A---------TCAACAT-CATC-AACAACAGCAACAG-----------------------G-TCATGCAATTG
droYak3 2R:17620353-17620491 + AATTAAAATATTTTGGCATCAG---------------------T------------------------------------------------------------------------------------------------ACTAATC----CAACACTTTCTATTCACTTTGCAGTTGG-------------------------------------------------------------CGCTGGCG-------------CTC-----------------------------------------------------------------------TTGGCCTTTGGAGTTGCCTCATC-----------A----TC---------CTCCACCACCAGCACA-------------------------------------------------------------ACCACAT------C---GGTGAAGCCAA--------------------------------------------------------------------------------AGACCAATA
droEre2 scaffold_4929:237579-237678 + CAAGGAAAGGAAGGAGAAGAAACGTGAGAAGCTTAGGAACATGA--------------------------------------------------------------------------------------------------------------------------------------------CG---GAATC----------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTACCCAA---------------TTC-GCCTACC---ACCAAT----G---ACACAAG----------TTCCGAAAAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CAAGGAACGCAAAGAGAAGAAACGTGAGAAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGCGGCGAAACGAATTTTACCACCACTTCGAATGCCATT----------------------GGCAGCAATAGCAATGCCA--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTGGTGCTACTAAT-------G------CCA------CCACCAGCACG-------------------------------------------------------------ACAACAA------C---AGCAACATCAACA----------------------------------ACCACT---ACCAAC----G---ATATCAG----------CAGCGAGAAACTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................AATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
.......................................................................................................................................................................ATT----------------------GGCAGCAATAGCAATGC..................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
..............................ATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
...........................GAAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200
.............................AATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAG----------CAGCGAGAAACT.1911.00101000
............................AAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................................................................................................................................GAAACGAATTTTACCACCACTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...........................GAAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.........................................................................................................................................................CCACTTCGAATGCCATT----------------------GGCA...............................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.........................................................................................................................................................................................................................................................................................................................................................................ACTAAT-------G------CCA------CCACCAGCACG-------------------------------------------------------------ACAACA...............................................................................................................2711.00101000
...........AAGAGAAGAAACGTGAGAAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..............................................................................................................................................GAATTTTACCACCACTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
......................................................................................................................................................................................................................................................................................................................................................................GCTACTAAT-------G------CCA------CCACCAGCA....................................................................................................................................................................................2211.00100010
................................................................................................................................................................................................................................................................................................................................................TG------GTGTTCCCAGTGGTGC...........................................................................................................................................................................................................................1811.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT---ACCAAC----G---ATATCAG----------CAGC.........2111.00100010
............................AAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..AGGAACGCAAAGAGAAGAAACGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.........................GAGAAATTGAGGAATTTGGCT-------------------------------------------------------------------------------------GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............AGAAGAAACGTGAGAAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.................................................................................................................................................................................................................CA--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTGGTG............................................................................................................................................................................................................................2311.00100100
..................................................................................................................................................................................................................A--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTG...............................................................................................................................................................................................................................1911.00100010
.................................GAGGAATTTGGCT-------------------------------------------------------------------------------------GGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................A--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTGG..............................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---ACCAAC----G---ATATCAG----------CAGC.........2011.00100100
.....................................AATTTGGCT-------------------------------------------------------------------------------------GGCGGCGAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.................................................................................................................................................................................................................CA--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTGGT.............................................................................................................................................................................................................................2211.00101000
.AAGGAACGCAAAGAGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC----G---ATATCAG----------CAGCGAG......1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................TGCTACTAAT-------G------CCA------CCACCA.......................................................................................................................................................................................2011.00101000
.................................................................................................................................................................................................................CA--------------------------------------------------TTT-----------------------------------------------------------------------GTG------GTGTTCCCAGTG...............................................................................................................................................................................................................................2011.00101000
droVir3
TAAAAAACAGAACGAAAAAAATTTGAGTAAGCAGTT-GGCTGTC-GGCAGTTTATGACCTTTTCGAAAGGTGGCGACAGGCTGCTGATTGCAGCTTAGCCTTAATAATGGCCCACAAAACGGTTTTAGACCAGC---------------------------T---------------AGTAAAGCTTT---AAA----------------------------TAA-----------------------CCT---TAAA-----------------------------------------------------------------------------------------------------------------GTA----ACAGCAACAGCAAC------------------------------------------------------------------------AGCAA------C---AACAACATC------------------------------------------------------------------AACAAACATCAGAGTCGAATAGC--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC------------------------------------------------------------------------AGCAA------C---AACAACATC------------------------------------------------------------------AA.......................2640.251001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC------------------------------------------------------------------------AGCAA------C---AACAACATC------------------------------------------------------------------A........................2560.171001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAAC------------------------------------------------------------------------AGCAA------C---AACAACAT............................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAAC------------------------------------------------------------------------AGCAA------C---....................................................................................................19200.051000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................A----ACAGCAACAGCAAC------------------------------------------------------------------------AGCAA------C---AACAA...............................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------C---AACAACATC------------------------------------------------------------------AACA.....................19200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAAC------------------------------------------------------------------------AGCAA------C---AACAA...............................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................A----ACAGCAACAGCAAC------------------------------------------------------------------------AGCAA------C---A...................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA------C---AACAACATC------------------------------------------------------------------AACAA....................19200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC------------------------------------------------------------------------AGCAA------C---AACAACA.............................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GAAAAGGGGAAAAAAGAGCAACTGCT-GAGGACGAGGCGAACAA-----------------------------------------------------------------------------------------------------------------CAACTATGAATAAGGCAGGCGGA-------------------ACAGCCGCACGA--------------------------------------------------TTCG----------------------CTA--------------------AAT----------------------CCGAATTGAAATGT--------TGCCGCC---TCG----GCTAGCAGCAACAGCAAC------------------------------------------------------------------------AACAA------C---AACAACATGTTAA----------------------------------ACTAGC---AACAAC----A---ACAACAG--------------CAACTATAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AACAAC----A---ACAACAG--------------CAACT....22200.051100000
droGri2
CAAAGGAGGCAATAAAAA---ATTCAAAAACTTGAA---TCTGGCC-------------------------------------------------------------------------------------AGAGCGGAGGTGATGTTGCCCTCAACGTCGAAACTCA------------------------AGCAACAACAACAATTGCAACTTAATTGCCC--------------------------------------TTC-----------------------ATC--------------------AT---------------------------------------CCTC-------------------------------------------------------------------ATCGTCAACTGCTGCTGCTGC---TGTTGCTGCTCCTACGACAACGA------CAAC---AACAGCAGCA---A------CTATAGCGAGTG--CGAGTGC--AA-CGCT----------------------GG--------------CAGCGA-CGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---A------CTATAGCGAGTG--CGAGTG.........................................................2811.00101
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AACAGCAGCA---A------CTATAGCG.....................................................................2011.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA------CAAC---AACAGCAGCA---A------CT...........................................................................2020.50110
dp5
CAAGGAGCGCAAGGAGAAGAAACGCGAGAAGATGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGAC----------------------------AAACACCATCGCTG-----------------------------GGTCTGCCACCA-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCACCATCACACATGAGCAGCGGCAGCAGCAGC-ACACCAGCTGCACCGCCAGCAGCAA------CAGC---AGCAGCAGCG---GCTGT------G---------CCGGTTC-CGTCTGCCGGCAGCAACGATCTCGGGGAAAAG-----------CTGGAGAAGCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACCATCACACATGAGCAGC....................................................................................................................................................2011.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GCTGT------G---------CCGGTTC-CGTCTG.................................................2011.0010100000000
.....AGCGCAAGGAGAAGAAACGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA------CAGC---AGCAGCAGCG---GC..................................................................................20200.0510010000000
droPer2
CAAGGAGCGCAAGGAGAAGAAACGCGAGAAGATGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGAC----------------------------AAACACCATCGCTG-----------------------------GGTCTGCCACCA-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCACCACCACACATGAGCAGCGGCAGCAGCAGC-ACACCAGCTGCACCGCCAGCAGCAA------CAGC---AGCAGCAGCG---GCTGT------G---------CCGGTTC-CGTCTGCCGGCAGCAACGATCTCGGGGAGAAG-----------CTGGAGAAGCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCGGCAGCAACGATCTCGG..............................2412.002200000
.................................................................................................................................................................................................C----------------------------AAACACCATCGCTG-----------------------------GGT.......................................................................................................................................................................................................................................................................................................................1812.002200000
......................CGCGAGAAGATGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATCTCGGGGAGAAG-----------CTGGAGG.....2511.001100000
...............................................................................................................................................................................................GAC----------------------------AAACACCATCGCTG-----------------------------GGTCT.....................................................................................................................................................................................................................................................................................................................2211.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACCACCACACATGAGCAGCGGC.................................................................................................................................................2311.001010000
..........................AGAAGATGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGAC----------------------------.....................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................CACATGAGCAGCGGCAGCA.............................................................................................................................................1911.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGGGGAGAAG-----------CTGGAGA.....2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATCTCGGGGAGAAG-----------CT..........2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGATCTCGGGGAGA.........................1911.001001000
...........................GAAGATGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................AACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGAT----------------------------C....................................................................................................................................................................................................................................................................................................................................................................1870.141000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------CAGC---AGCAGCAGCG---G...................................................................................2280.131100000
....................................GAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCGGAGTT----------------------------.....................................................................................................................................................................................................................................................................................................................................................................18150.071000010
droAna3
CAAGGAGCGGAAGGAGAAGAAGCGAGAGAAGCTGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---GAGGC----------------------------CAA-----------------------CAG---CACCACT----------------------------------------------------------------------------------------------------------GCGAACA----GCAGCAACTCCACCA-------------------------------------------------------------------------------------------------------------CCAA---------------CTC-CGCCACC---ACCAAT----G---ATGTGAC----------TTCAGAGAAACTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........GGAAGGAGAAGAAGCGAGAGAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002020000
................................TGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---GAGGC----------------------------CAA-----------------------CAG---.....................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................AGCAACTCCACCA-------------------------------------------------------------------------------------------------------------CCAA---------------CTC-CGCCACC---AC..........................................2911.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................CTCCACCA-------------------------------------------------------------------------------------------------------------CCAA---------------CTC-CGC...................................................1811.001010000
...................AAGCGAGAGAAGCTGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---G.....................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........GGAAGGAGAAGAAGCGAGAGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................GAAGCTGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---GAG...................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
CAAGGAGCGCAAGGAGAAGAAGCGCGAGAAGCTGAGGAATCTCA--------------------------------------------------------------------------------------------------------------------------------------------CC---GAGGC----------------------------CAA-----------------------CAGTGCCACCACA----------------------------------------------------------------------------------------------------------GCGATTG----GCGGCAACTCCACCG-------------------------------------------------------------------------------------------------------------CCAA---------------CTC-CGCCACA---CCCAAC----G---ATGTGAC----------ATCCGAGAAGCTCSizeHit CountTotal NormTotal
No Reads
droKik1
TAAGGAGCGCAAGGAGAAGAAGCGCGAGAAGCTGAGGAACCTCA--------------------------------------------------------------------------------------------------------------------------------------------CA---GAGAC----------------------------CAACGCAACCGTTG-----------------------------GAAGCG-----------------------------------------------------------------------------------------------------------------------------TGACCACAGTA--A-----------------------------------------------------------------A---CACAA------------------CCAA------TCCTCC---AAT-GGTTACA------AAT----GAGGTGATTAG----------CTCTGAGAAACTTSizeHit CountTotal NormTotal
No Reads
droFic1
GAG----TTCAATGCAAAGACATGTGCATAAATGAAGAGCTACA--------------------------------------------------------------------------------------------------------------------------------------------GC---CAATT----------------------------TAATTTAAACGCCG---------CCG-------------CCC-CGCCCGCCATTG--------CATACGACAATTCAGTTGTAAATCCAAACGG-------------------TTCGCCTTTAGA----------------------------------T------------------------------------------CAGCAACAACAAC------------------------------AA------C---AGC---------A---A------CAACAACAAGCG--------------CAGC----------------------AG--------------CAGCAG-CGSizeHit CountTotal NormTotal
No Reads
droEle1
CAAGGAGCGGAAGGAAAAGAAACGCGAGAAACTGAGGAATATGG--------------------------------------------------------------------------------------------------------------------------------------------CA---GATAC----------------------------CAA-----------------------TAACAGCACCACC----------------------------------------------------------------------------------------------------------GTAAG-------C---------GCCA-------------------------------------------------------------------------------------------------------------CTAA---------------TAC-TCCTACC---ACCAAT----G---ATATTAG----------CTTGGAGAAATTGSizeHit CountTotal NormTotal
No Reads
droRho1
AACAGACAACAAGCGAAAGCAACAACAACAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGGGCGTTGGCT-------------C-----------ACCAGGCAACCACACAC--------------------AATCACAC----------------------------------------------------------------------------------------------------------CAACAACAGCAGCAACAGCAACAACAGCTGCATCA-------CAACAACAACACC---AGCAACAACAGCAAT--T------G---------CCACCAC--AGTCACC----------------------AG--------------CAGCAACAASizeHit CountTotal NormTotal
No Reads
droBia1
CCACCAACATCGGCAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCTACAACATCGCCAGCTGAAACGCCC---------------------------------------------------------------------------------------------------------------------------------AAAGGCGCCGCTAA-------------CATCA------------------------------------------------------------------------ACGCCAGCGCCAA------C---AACAACATCGGCA----------------------------------GCCAGC---GCCAAC----A---ACATCGG----------CAGCCAGCAAC--SizeHit CountTotal NormTotal
No Reads
droTak1
AC------CCAAAAAAACGAAACGAAAGAAAATAAGAGAGGCGG--------------------------------------------------------------------------------------------------------------------------------------------CTACGAATTC----------------------------GAA----------------------------------------------------------TATGTTC--------------------AATCATACCAAACTTTTTTCAGATTTTTGATTTTGTATCCCCATCATCACCACCACC-------A------CTA------CCACCACAACT-------------------------------ATAAC------------------------------AA------C---AAC---------A---A------CCAG---------------TAC-AAGCACC---AACAAC----A---ACATCAA----------C------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAAGGAAAGAAAAGAAAAGAAACGTGAGAAGTTGCGGAATATAA--------------------------------------------------------------------------------------------------------------------------------------------CG---GAGAT----------------------------CAA-----------------------TAGCATCACTAC--------------------------------------------------------------------------------------------------------------------------------TATAG-------------------------------------------------------------------------------------------------------------GCAA---------------TTC-GCCTACC---AGCAAT----G---ATTTAAG----------TTCTGAAAAATTASizeHit CountTotal NormTotal
No Reads
dm3
GATGCAGCAGCAGGAGCAGCAGCAGCGTCAACTGTTTGACC------------------------------------------------------------------------------------------AGC-------------------------------------------GGCGCAGCCAC---CAC----------------------------CAG-----------------------CCT---CACCATC----------------------------------------------------------------------------------------------------------ACCACCA----GCCGCATCATCATCG---CCACCACC------------------------------------------------------------------------------ATCAT----C---A--CC-AGCAA------CG--------------CATC---AACAAC-------------AA--------------TAACAATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......GCAGCAGGAGCAGCAGCAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000
........AGCAGGAGCAGCAGCAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000001000000
...................CAGCAGCGTCAACTGTTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.....................................GACC------------------------------------------------------------------------------------------AGC-------------------------------------------GGCGCAGCCAC---C...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCAGCAGCGTCAACTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AC---CAC----------------------------CAG-----------------------CCT---CACCATC----------------------------------------------------------------------------------------------------------A...................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
GATGCAGCAGCAGGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GATGCAGCAGCAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCAGCGTCAACTGTTTGATT------------------------------------------------------------------------------------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......GCAGCAGGAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCAGCAGCAGGAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGCAGGAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CAGCAGGAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......CAGCAGGAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AATGAAAGA-AAAAAAAAAAAACGAAAGAAAATAAGAGACGCCA----------------------------------------------------------------------------------------G---------------------------------------------------CTACGAATTC----------------------------GAA----------------------------------------------------------TATGTTC--------------------AATCATACCAAACTTTTTTCAGATTTTTGATTTTGTATCCCCATCATCACCACCACC-------A------CTA------CCACCACAACT-------------------------------------------------------------------ACAACAAC---AACAAC------A---A------CCAG---------------TAC-AAGCACC---AACAAC----A---ACATCAA--------------CAACAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................CCACCACC-------A------CTA------CCACCACA.....................................................................................................................................................................................2012.00200002000000000000
...........................................................................................................................................................................................................................................................................................................................................................TCCCCATCATCACCA.........................................................................................................................................................................................................................1511.00100000000010000000
.........................................................................................................................................................................................TACGAATTC----------------------------GAA----------------------------------------------------------TATGT...................................................................................................................................................................................................................................................................................................1720.50100000000001000000
................................TAAGAGACGCCA----------------------------------------------------------------------------------------G---------------------------------------------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................15150.07100000001000000000
droSec2
AATTTGAATTT---GAACCAAAAGCGTTTGGCCGGTGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-----------------------------A--------------------------------------------------------------------------------ATCCCCTGCAGCAACAA---------------------------------------------CAACAGCATC-CACAGCAACAGCTTCAACAAC------AACAACAACAACAACAACAACAA------CAAC---AACAACAACA---ACAAC------A---------TCAACAT-CATC-AACAACAGCAACAG-----------------------G-TCATGCAATTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
AATTTGAATTT---GAACCAAAAGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.......................GCGTTTGGCCGGTGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-----------------------------A--------------------------------------------------------------------------------.........................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AACAACAACA---ACAAC------A---------TCA............................................................2150.2011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---AACAACAACA---ACAAC------A---------T..............................................................2190.1110100
droYak3
AATTAAAATATTTTGGCATCAG---------------------T------------------------------------------------------------------------------------------------ACTAATC----CAACACTTTCTATTCACTTTGCAGTTGG-------------------------------------------------------------CGCTGGCG-------------CTC-----------------------------------------------------------------------TTGGCCTTTGGAGTTGCCTCATC-----------A----TC---------CTCCACCACCAGCACA-------------------------------------------------------------ACCACAT------C---GGTGAAGCCAA--------------------------------------------------------------------------------AGACCAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAAGGAAAGGAAGGAGAAGAAACGTGAGAAGCTTAGGAACATGA--------------------------------------------------------------------------------------------------------------------------------------------CG---GAATC----------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTACCCAA---------------TTC-GCCTACC---ACCAAT----G---ACACAAG----------TTCCGAAAAATTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................GA--------------------------------------------------------------------------------------------------------------------------------------------CG---GAATC----------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTACCC...........................................................................1911.0010100000
...............................................................................................................................................................................................ATC----------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTACCCAA---------------TTC-GC....................................................2011.0011000000

Generated: 05/18/2015 at 12:46 AM