dwi_1142

CDS [Dwil\GK23871-cds]; exon [dwil_GLEANR_7826:7]; CDS [Dwil\GK23871-cds]; exon [dwil_GLEANR_7826:8]; intron [Dwil\GK23871-in]

Name	Class	Family	Strand
(ATG)n	Simple_repeat	Simple_repeat	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GATGTTGCAACAACAACAGCAACAATTACAAAATGTTTTATATGAGAATTGTGAAAAAGCACAAGCGCATATGCAAAAAATAATACAATCACCCTGATGACAATGATGATGATAATCTTATTGATAATAAGGATAATGATGATGATGATGATAATGGTCATGATAATGGTGGCCATGTTAAATGTAAATTATATGAATTGCCACCAGGCAGCAGGCATCATCAGCAAAGCCAATTCGCTGGCACCATGAGTCACTTG ************************************************((((....((....))((....))..............))))(((.....((((((.(((....)))))))))......)))......((.(((((.((....)).))))).))..((((((((((((............)))))....))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	M045 female body	V119 head
...............................................................................................................................................................................................................................................GGCACCATGAGTCACTTG	18	0	1	1.00	1	0	1	0
..................................................................................ATACACTCACCCTCATGACA...........................................................................................................................................................	20	2	1	1.00	1	1	0	0
.................AGAAACAATTACAAAATGT.............................................................................................................................................................................................................................	19	1	2	0.50	1	1	0	0
......................................................................................................................................AATGATGATGATGATGATAA.......................................................................................................	20	0	20	0.10	2	2	0	0
........................................................................................................................................TGATGATGATGATGATAATGG....................................................................................................	21	0	14	0.07	1	0	0	1
...................................................................................................................................GATAATGATGATGATGATG...........................................................................................................	19	0	20	0.05	1	1	0	0
.........ACAACAACAGCAACACTTAGAAAT................................................................................................................................................................................................................................	24	3	20	0.05	1	0	1	0

CTACAACGTTGTTGTTGTCGTTGTTAATGTTTTACAAAATATACTCTTAACACTTTTTCGTGTTCGCGTATACGTTTTTTATTATGTTAGTGGGACTACTGTTACTACTACTATTAGAATAACTATTATTCCTATTACTACTACTACTACTATTACCAGTACTATTACCACCGGTACAATTTACATTTAATATACTTAACGGTGGTCCGTCGTCCGTAGTAGTCGTTTCGGTTAAGCGACCGTGGTACTCAGTGAAC ************************************************((((....((....))((....))..............))))(((.....((((((.(((....)))))))))......)))......((.(((((.((....)).))))).))..((((((((((((............)))))....))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	M020 head	V118 embryo
..........................................................................................................................................................................................................TGGTCTGTAGTCCATAGTAG...................................	20	3	8	0.13	1	1	0	0
......................................................................................................................................................................................................................CGTAGTAGTCAATTCGGT.........................	18	2	9	0.11	1	1	0	0
........................................................................................AGTCGGACTACTGTCGCTAC.....................................................................................................................................................	20	3	20	0.10	2	0	2	0
...............................................TAACACTTCTTCGTGATC................................................................................................................................................................................................	18	2	12	0.08	1	1	0	0
.....................................................................................GTTAGTGTGACTACAGTT..........................................................................................................................................................	18	2	15	0.07	1	0	0	1
.........................................................................................GTGGGACTCCTGTTCCTGC.....................................................................................................................................................	19	3	19	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004516:712701-712957 +	dwi_1142	GATGTTG-CAACAACAACAGCAACAATTAC--------------------AA------------------------------------------AATGTTTTAT---------------------------------------------------------------ATGAGAATTGTGAAAAAGCACAAGCGCATATGCAAAAA-----------------------------ATAATACAATCAC---------------------------------------CC------TG---------------AT---GA------------------CAATGATGATGATAATCTTATTGA------------TAA---------TAAGGATAATGATG-----ATGATGATGATAATGGTCA--TG--------------------------------AT------------AATG-----GTGGCCAT--GTTAA-----ATGTAAATTATATGAATTGCCACCAG------------------------GCA-GCAGGCATCATCAGCAAAGCCAA--------------TTCG-C------------TGG------------------------------------------C-ACC--A--TGAG----TCA--------------CT-T--G----------------
droVir3	scaffold_12970:11178235-11178500 -		GCCACAA-CCATAGCAAATGCAAAACTAAT--------------------CA------------------------------------------CAGGCCTCGCCGCGAC-----------------------------------------------------------------------TATGAACCAGAGCT--TGAAGAAAATGAGGCGGAGTTTGAGTACGATAATGATGAGG-AC---------------------------------------------AATGATGATG---------------AT---GATGATGATGATAATGATGATGATGATGATGATGATGGTGGTGATGATGATGACGA------------------------TGAATAT--------------------T----AT---------------G---ATGATGACGATGCGGACTTGGATAACTTTGAG----------------------------------A---------------------------------------ATGGCGAACAGCTGCTGC-------------------------TGGGTCTGCC--TCA------------------------------------------GCG-C-AG--TCAA----TCC--------------ATTTG-C----------------
droMoj3	scaffold_6496:3044250-3044494 -		ATGACAA-TGACAATGACAATGACAATGAC--------------------AA------------------------------------------TGACAATGACAATGACAATGACAATGACAA----------------------------------------------------------------------------------------------------------TGACAATG-ACAATGAC---------------------------------------AA------TG---------------AC---A------------------ATGACAATGACAATGACAATGACAATGACAATGACAATGACAATGACAA---------TGACA-----ATGATAA---------T--G-----AC------------------AATGGCAATA---------CCAATGACAATG----------------------------------------------------------------------------GCAATGGCCTATGACAAT--------------------------------------GACATTGACCGTTACCTAAAATATCATTAGCTAGCATGAAATGAT-ACT--A--TAA----------------------GT-C--A----------------
droGri2	scaffold_15252:16616595-16616811 -		GTTGCAA-CAACAGCAGCAACAGTTTTCGTCGTCCAAATTCAACT-----------------------------------CCTGCAGCCAA------------------C------AGCCAGAACAGATGTTGCAA---------------TTAGCTAATGT---------------------------------------------------------------------------------------------------------------------------------------------ATTTATTG------G------------------------------------------------------GCA---------TGATAATAATGTTG-----ATGCTGATGTTGATGATGA--TGATG---------------------TGGCAGCA----------------------------------ACAAGCCAACCAC-AACAGCAACAG----------------------------------TTG-CCACC-----ACAGCAGC-------------------------AGCAGCAACCACTTG------------------------------------------CCA-C-AG--TTGG----TCA--------------AC-T--T----------------
dp5	4_group3:3449304-3449475 -		GATGTTG-CAGCAACAACAACAACAGCTAG--------------------AC------------------------------------------CATGTTTTAT---------------------------------------------------------------ATGAGAATTGTGA------------------------------------------------------------------------------------------------------------------------GATAATCAATG------G------------------------------------------------------CAA---------AGAAGCTAATGCTA-----ATGATGATGTTGATGATGA--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-GC--CAGGCAGCAGCAAC-------------------------AGCAGCAGCATCTGA------------------------------------------TGG-C-AG--TGGG----GCA--------------AA-T--G----------------
droPer2	scaffold_1:4926790-4927033 -		ACAGCAG-CAGCAGCAACCAGAGCAAGAGC--------------------AAGAGCAATTAACTGAGACA---------ACCTGCAGCCAA------------------C------AGCAAGAACAGATGTTGCAGCAACAACAACAACAGCTAGACCATGTTTTATATGAGAATTGTGA------------------------------------------------------------------------------------------------------------------------GATAATCAATG------G------------------------------------------------------CAA---------AGAAGCTAATGCTA-----ATGATGATGTTGATGATGA--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-GC--CAGGCAGCAGCAAC-------------------------AGCAGCAGCATCTGA------------------------------------------TGG-C-AG--TGGG----GCA--------------AA-T--G----------------
droAna3	scaffold_13266:807598-807876 +		GATGTTGCCAGCAACAGCAGCAGCAAGCCC-----------AGTACTAGCACACGCGATAAGCTGAGCGAGTTGCCTCTACCAGCTGCCGA------------------C--------------------------------------------------------------------------------------------------------------------------------------AACAACAACCACAATA------------ATAATAATAATAACAA------CA------------ATCATAATAATAATAATAATAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAATTA------------------------TGAATTT--------------------A----AG---------------AGTTGTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAGCAG-------------------------------------------------------ATG-GCAGCCGTCAGCAGCAACAAGGA--------------GCCA-G------------TGG------------------------------------------C-TC----------------------------------C--A----------------
droBip1	scf7180000396730:1813308-1813529 +		GCTGCCG---ACAACACAAAAAACAACAAC--------------------AA------------------------------------------TAATAATAATAATAATAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------CA---------ACAATCATAATAATAATAATAACAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAATTA------------------------TGAGTTT--------------------A----AG---------------AGTTGTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAACAG-------------------------------------------------------ATG-GCAGCCGTCAGCAGCAACAAGGA--------------GCCA-G------------TGG------------------------------------------C-TC----------------------------------C--A----------------
droKik1	scf7180000302274:149136-149361 -		CT-GCAA-CAGCAGCAGCAGCAACT-TGCC--------------------AC------------------------------------CGGCAACAACAGCAACACCAGTCCCGGCAGCAACAA----------------------------------------------------------------------------------------------------------TAACAACA-AC---------------------------------------------AT---------------ACTCAATCACAACAATCTCAATATCATTATCAATAACCATAATAATAGTAACAATAATAATAACAA---------------------------CA--------A-----------------TC------------------------CAGCAACA----------------------------------CCAA-----ATGCAAATCTTGTGGCTAGCAACAATGCCACGCCCACGG-----------TTA--------------ATACCGCCGT--------------TGCG------------------------------------------------------------------G--TGGC----GCA-----------------A--C----------------
droFic1	scf7180000454073:810104-810308 +		ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----AT------------------AATAATAATAAT------------------AAT-------------------------------------------------------------------------A----------ATAATAAT-------------------------AATAATAATAAT-AA------------------------------------------TAA-T-AATTA-A-TATT-----------------AA-T--T----------------
droEle1	scf7180000490214:28290-28495 +		GCGGCGA-TAACAATAGCAGCAACAGCAGC--------------------AA------------------------------------------AATGAATGAGACCTACAGCAGCTGCAGCAG----------------------------------------------------------------------------------------------------------CAACATTGCACGGCAAC---------------------------------------GC------CG---------------AT---GA------------------TAATGATGATAATAATAATAATAATGATGACGATGA----------------------------------------------------TGCA-----------------------------------------------------GACGAAGTCGCTCAA----------------------------------------GCGCATGATGACGACGTT-GT--CGAGTTGCAATTTC-------------------------AAGAGCCACAAC-----------------------------------------ACAAT-G----CCAA-G-TGCC-----------------AG-C--A----------------
droRho1	scf7180000776936:32791-32957 -		ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATGATAA---------T--A-----AT------------------AATA---------------------------GC----------------------------------------------------------------------------AGT-----------------------------------------------------------------------------------------------------GTCCA-A-CA-------------------------T----------------
droBia1	scf7180000301754:1198899-1199181 -		GCAACAG-CAACAGCAAACCCAGTTCAAGC--------------------ACGCGAGATAAACTAAGCGAGTTGCCGCTGCCGACTGTTGA---C-----------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAACCACATCATCAGCAACAAC------------AACAA------CAACAATACAA------ATAATAATAATAATAACAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAATTA------------------------TGAATTT--------------------A----AG---------------T---GTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAACAG-------------------------------------------------------ATG-GCAGCAGTCAGCAGCAACCAGGA--------------GCCA-G------------TGG------------------------------------------C-TCCAAG--TGTG----GCC-----------------A--A----------------
droTak1	scf7180000414983:492-692 -		ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----AT------------------AATAATAATAAT------------------AAT-------------------------------------------------------------------------AATAATAAGTAATAATAAT--------------------------------------AA--------------------------------------------------------------T-----------------AATACAGCTGACGT-----C
droEug1	scf7180000408961:938155-938302 -		GATGTTG-CAGTTGCAGCAGCAACAGCAGC--------------------AG------------------------------------------CTAGAGCATGTTTTGT---------------------------------------------------------ATGAGAATGGCCA------------------------------------------------------------------------------------------------------------------------G----CCAAGG------G------------------------------------------------------CT-----------GAAAATGATGATGGGG--TTGAGGATCGTGATGATGA--TATA-----------------------------------------------------------------------------------------------------------------------------G-GCAAACGGCAGCAGCAAC-------------------------------------TGG------------------------------------------CGG-T-AG--TGGG----TCA--------------AA-T--T----------------
dm3	chrUextra:25783352-25783542 -		ATAATAA-TAATAATAATAATAATAATTAT--------------------AA------------------------------------------TAATAATAAAATTAATAGTAATAATAATAG----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA------------------------TA--------ATAA---------T---A----AT---------------A---ATAATAATAATAATAATGTTAATAATAATAAT----------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------ATG-----------------TA-T----------------
droSim2	2r:7813524-7813844 +		GATGCTGCTAGTGGCAACAGCAACAGCAGC--AGCAAACCCAGCACGAGCACACGAGATAAGCTAGGCGAGGTGCCGCTGCCGACTGTTGA---C-----------------------------------------------------------------------------------------------------------------------------------------------------AGC---AACCACATCATCAGCAACAACAATAATAATAATAACAATAACAACA---------------CA---AATAATAATAACAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAGTTA------------------------TGAATTT--------------------A----AG---------------A---GTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAACAG-------------------------------------------------------ATG-GCAGCAGTCAGCAGCAACCAGGA--------------GCCA-G------------TGG------------------------------------------C-TCCCAA--TGTG----GCCAACACGATGAGCAACT-C--G----------------
droSec2	scaffold_11927:804-1055 +		GTAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATACTAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAGGAATA-ATGATAAT---------------------------------------AA------TA---------------AT---A------------------ATATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--G-----AT------------------AATAATAATAAT------------AATA-----GTAACAAT--GATAA-----T----------------AATAATAATATTA--------------------GTG-ATAATAATTAATAATAATAAT-AATCAATAATACTAATAATCC------------TAA------------------------------------------T---------AATA----ATA--------------AT-A--A----------------
droYak3	v2_chrUn_6486:449-624 -		ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----ATGTTGGGTCAAAACCCAATTATAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------
droEre2	scaffold_4929:24510157-24510339 +		ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----AT------------------TATAATAATA------------------ATAAT-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------A--TAGA----GTA--------------TT-T--A----------GCTCGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

GATGTTG-CAACAACAACAGCAACAATTAC--------------------AA------------------------------------------AATGTTTTAT---------------------------------------------------------------ATGAGAATTGTGAAAAAGCACAAGCGCATATGCAAAAA-----------------------------ATAATACAATCAC---------------------------------------CC------TG---------------AT---GA------------------CAATGATGATGATAATCTTATTGA------------TAA---------TAAGGATAATGATG-----ATGATGATGATAATGGTCA--TG--------------------------------AT------------AATG-----GTGGCCAT--GTTAA-----ATGTAAATTATATGAATTGCCACCAG------------------------GCA-GCAGGCATCATCAGCAAAGCCAA--------------TTCG-C------------TGG------------------------------------------C-ACC--A--TGAG----TCA--------------CT-T--G----------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------------------------------------C-ACC--A--TGAG----TCA--------------CT-T--G----------------	18	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AATGATG-----ATGATGATGATAA.........................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGATG-----ATGATGATGATAATGG......................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................GATAATGATG-----ATGATGATG.............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0

droVir3

GCCACAA-CCATAGCAAATGCAAAACTAAT--------------------CA------------------------------------------CAGGCCTCGCCGCGAC-----------------------------------------------------------------------TATGAACCAGAGCT--TGAAGAAAATGAGGCGGAGTTTGAGTACGATAATGATGAGG-AC---------------------------------------------AATGATGATG---------------AT---GATGATGATGATAATGATGATGATGATGATGATGATGGTGGTGATGATGATGACGA------------------------TGAATAT--------------------T----AT---------------G---ATGATGACGATGCGGACTTGGATAACTTTGAG----------------------------------A---------------------------------------ATGGCGAACAGCTGCTGC-------------------------TGGGTCTGCC--TCA------------------------------------------GCG-C-AG--TCAA----TCC--------------ATTTG-C----------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................TGATGATG---------------AT---GATGATGATGA..................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.65	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGGTGATGATGATGACGA------------------------TGAATAT--------------------..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTTTGAG----------------------------------A---------------------------------------ATGGCGAACAGC..................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATAGCAAATGCAAAACTAAT--------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGATGATG---------------AT---GATGATGATGATA................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.60	12	0	0	0	0	0	0	1	3	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGATG---------------AT---GATGATGATGATA................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.45	9	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGA..........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ATGATGATAATGATGATGATGAT..................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.40	8	1	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGATGATG---------------AT---GATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGATG........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGATG---------------AT---GATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGATGGT......................................................................................................................................................................................................................................................................................................................................................................	25	18	0.17	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................G-AC---------------------------------------------AATGATGATG---------------AT---GATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGGT......................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................C---------------------------------------------AATGATGATG---------------AT---GATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................	22	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATGATAATGATGATGATGATGA................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ATGATGATG---------------AT---GATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GATAATGATGATGATGATGATGAT............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGATGATAATGATGATGATGAT..................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ATGATGATAATGATGATGATGA...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGATGATG---------------AT---GATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AATGATGATGATGATGATGAT............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGATG---------------AT---GATGATGATGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGATGATG---------------AT---GATGATGATGATAA...............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGATGATGATAATGATGATGA......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ATGATGATAATGATGATGATG....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GATGATAATGATGATGATGAT..................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GATGATAATGATGATGATGATGAT...............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATGATAATGATGATGATGA...................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATG...........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AC---------------------------------------------AATGATGATG---------------AT---GATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................	23	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AC---------------------------------------------AATGATGATG---------------AT---GATGATG......................................................................................................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATG---------------AT---GATGATGATGATAATGATG..........................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................T---GATGATGATGATAATGATGATGA......................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ATGATGATAATGATGATGATGATGA................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................G---------------AT---GATGATGATGATAATGATGAT........................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GATGATGATAATGATGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AC---------------------------------------------AATGATGATG---------------AT---GATGA........................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GATG---------------AT---GATGATGATGATAATGA............................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GATAATGATGATGATGATGATGATGAT.........................................................................................................................................................................................................................................................................................................................................................................	27	17	0.06	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ATGATGATAATGATGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGATGGTG.....................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ATGATGATG---------------AT---GATGATGATGATA................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GATGATGATGATAATGAT...........................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATGA..........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATGATAATGATGATGATGAT..................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGATGATAATGATGATGATGA...................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................AATGATGATG---------------AT---GATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GATGATAATGATGATGATGA...................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................AATGATGATG---------------AT---GATGATG......................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAATGATGATGATGATGATGA.............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................TGATAATGATGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GATGATGATGATAATGATGAT........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GATGATGATAATGATGATGATG....................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATGGT......................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATGATAATGATGATGATGATGAT...............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGATGG.......................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGATG---------------AT---GATGATGATGATAA...............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATGATAATGATGATGATGATGATG..............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAATGATGATGATGATGATGAT............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................G---------------AT---GATGATGATGATAATGA............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATGACAA-TGACAATGACAATGACAATGAC--------------------AA------------------------------------------TGACAATGACAATGACAATGACAATGACAA----------------------------------------------------------------------------------------------------------TGACAATG-ACAATGAC---------------------------------------AA------TG---------------AC---A------------------ATGACAATGACAATGACAATGACAATGACAATGACAATGACAATGACAA---------TGACA-----ATGATAA---------T--G-----AC------------------AATGGCAATA---------CCAATGACAATG----------------------------------------------------------------------------GCAATGGCCTATGACAAT--------------------------------------GACATTGACCGTTACCTAAAATATCATTAGCTAGCATGAAATGAT-ACT--A--TAA----------------------GT-C--A----------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..GACAA-TGACAATGACAATGACAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

GTTGCAA-CAACAGCAGCAACAGTTTTCGTCGTCCAAATTCAACT-----------------------------------CCTGCAGCCAA------------------C------AGCCAGAACAGATGTTGCAA---------------TTAGCTAATGT---------------------------------------------------------------------------------------------------------------------------------------------ATTTATTG------G------------------------------------------------------GCA---------TGATAATAATGTTG-----ATGCTGATGTTGATGATGA--TGATG---------------------TGGCAGCA----------------------------------ACAAGCCAACCAC-AACAGCAACAG----------------------------------TTG-CCACC-----ACAGCAGC-------------------------AGCAGCAACCACTTG------------------------------------------CCA-C-AG--TTGG----TCA--------------AC-T--T----------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................ACAGATGTTGCAA---------------TTAGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dp5

GATGTTG-CAGCAACAACAACAACAGCTAG--------------------AC------------------------------------------CATGTTTTAT---------------------------------------------------------------ATGAGAATTGTGA------------------------------------------------------------------------------------------------------------------------GATAATCAATG------G------------------------------------------------------CAA---------AGAAGCTAATGCTA-----ATGATGATGTTGATGATGA--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-GC--CAGGCAGCAGCAAC-------------------------AGCAGCAGCATCTGA------------------------------------------TGG-C-AG--TGGG----GCA--------------AA-T--G----------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGATGA--TGTG-----------------------------------------------------GTGGG...................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-GC--..........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-GC--CAGGCAGCAGCAAC-------------------------AGCAGC.............................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................A--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-GC--..........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGA------------------------------------------TGG-C-AG--TGGG----GCA--------------AA-T--.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-------------------------AGCAGCAGCATCT......................................................................................................	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC-------------------------AGCAGCAGCATC.......................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAC-------------------------AGCAGCAGCATC.......................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

ACAGCAG-CAGCAGCAACCAGAGCAAGAGC--------------------AAGAGCAATTAACTGAGACA---------ACCTGCAGCCAA------------------C------AGCAAGAACAGATGTTGCAGCAACAACAACAACAGCTAGACCATGTTTTATATGAGAATTGTGA------------------------------------------------------------------------------------------------------------------------GATAATCAATG------G------------------------------------------------------CAA---------AGAAGCTAATGCTA-----ATGATGATGTTGATGATGA--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-GC--CAGGCAGCAGCAAC-------------------------AGCAGCAGCATCTGA------------------------------------------TGG-C-AG--TGGG----GCA--------------AA-T--G----------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................CAAGAGC--------------------AAGAGCAATTAACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GATGA--TGTG-----------------------------------------------------GTGGGGATCCATCAA-------------------------------------------------------GTG-..............................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTTGATGATGA--TGT..............................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTTGATGATGA--TGTG-----------------------------------------------------T.......................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	1

droAna3

GATGTTGCCAGCAACAGCAGCAGCAAGCCC-----------AGTACTAGCACACGCGATAAGCTGAGCGAGTTGCCTCTACCAGCTGCCGA------------------C--------------------------------------------------------------------------------------------------------------------------------------AACAACAACCACAATA------------ATAATAATAATAACAA------CA------------ATCATAATAATAATAATAATAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAATTA------------------------TGAATTT--------------------A----AG---------------AGTTGTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAGCAG-------------------------------------------------------ATG-GCAGCCGTCAGCAGCAACAAGGA--------------GCCA-G------------TGG------------------------------------------C-TC----------------------------------C--A----------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................GAATAATTA------------------------TGAATTT--------------------A----AG---------------AGTT........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................GATAAGCTGAGCGAGTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.............................................................GCTGAGCGAGTTGCCTCTACCAGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................................................GCACACGCGATAAGCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AATTA------------------------TGAATTT--------------------A----AG---------------AGTTGTAGAG..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
...........................................................AAGCTGAGCGAGTTGCCTCTACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGTCAGCAGCAACAAGGA--------------.........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................C-----------AGTACTAGCACACGCGATAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAAGGA--------------GCCA-G------------TG.....................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................CTACCAGCTGCCGA------------------C--------------------------------------------------------------------------------------------------------------------------------------AACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................GAGTTGCCTCTACCAGCTGCCGA------------------C--------------------------------------------------------------------------------------------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAATGACGCTACAGCA..........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------------------------------------ATG-GCAGCCGTCAGCAGC...............................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCAG-------------------------------------------------------ATG-GCAGCCGTCAGC..................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GAATTT--------------------A----AG---------------AGTTGTAGAGATAAAGC...........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCAGCAACAAGGA--------------GCCA-G------------TGG------------------------------------------C-TC----------------------------------C--.................	29	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATAACAACAACCACCACAGT...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCAGCAGCAACAAGG........................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................AACAACCACAATA------------ATAATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GCTGCCG---ACAACACAAAAAACAACAAC--------------------AA------------------------------------------TAATAATAATAATAATAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------CA---------ACAATCATAATAATAATAATAACAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAATTA------------------------TGAGTTT--------------------A----AG---------------AGTTGTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAACAG-------------------------------------------------------ATG-GCAGCCGTCAGCAGCAACAAGGA--------------GCCA-G------------TGG------------------------------------------C-TC----------------------------------C--A----------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CT-GCAA-CAGCAGCAGCAGCAACT-TGCC--------------------AC------------------------------------CGGCAACAACAGCAACACCAGTCCCGGCAGCAACAA----------------------------------------------------------------------------------------------------------TAACAACA-AC---------------------------------------------AT---------------ACTCAATCACAACAATCTCAATATCATTATCAATAACCATAATAATAGTAACAATAATAATAACAA---------------------------CA--------A-----------------TC------------------------CAGCAACA----------------------------------CCAA-----ATGCAAATCTTGTGGCTAGCAACAATGCCACGCCCACGG-----------TTA--------------ATACCGCCGT--------------TGCG------------------------------------------------------------------G--TGGC----GCA-----------------A--C----------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----AT------------------AATAATAATAAT------------------AAT-------------------------------------------------------------------------A----------ATAATAAT-------------------------AATAATAATAAT-AA------------------------------------------TAA-T-AATTA-A-TATT-----------------AA-T--T----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCGGCGA-TAACAATAGCAGCAACAGCAGC--------------------AA------------------------------------------AATGAATGAGACCTACAGCAGCTGCAGCAG----------------------------------------------------------------------------------------------------------CAACATTGCACGGCAAC---------------------------------------GC------CG---------------AT---GA------------------TAATGATGATAATAATAATAATAATGATGACGATGA----------------------------------------------------TGCA-----------------------------------------------------GACGAAGTCGCTCAA----------------------------------------GCGCATGATGACGACGTT-GT--CGAGTTGCAATTTC-------------------------AAGAGCCACAAC-----------------------------------------ACAAT-G----CCAA-G-TGCC-----------------AG-C--A----------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATGATAA---------T--A-----AT------------------AATA---------------------------GC----------------------------------------------------------------------------AGT-----------------------------------------------------------------------------------------------------GTCCA-A-CA-------------------------T----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAACAG-CAACAGCAAACCCAGTTCAAGC--------------------ACGCGAGATAAACTAAGCGAGTTGCCGCTGCCGACTGTTGA---C-----------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAACCACATCATCAGCAACAAC------------AACAA------CAACAATACAA------ATAATAATAATAATAACAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAATTA------------------------TGAATTT--------------------A----AG---------------T---GTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAACAG-------------------------------------------------------ATG-GCAGCAGTCAGCAGCAACCAGGA--------------GCCA-G------------TGG------------------------------------------C-TCCAAG--TGTG----GCC-----------------A--A----------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----AT------------------AATAATAATAAT------------------AAT-------------------------------------------------------------------------AATAATAAGTAATAATAAT--------------------------------------AA--------------------------------------------------------------T-----------------AATACAGCTGACGT-----C	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GATGTTG-CAGTTGCAGCAGCAACAGCAGC--------------------AG------------------------------------------CTAGAGCATGTTTTGT---------------------------------------------------------ATGAGAATGGCCA------------------------------------------------------------------------------------------------------------------------G----CCAAGG------G------------------------------------------------------CT-----------GAAAATGATGATGGGG--TTGAGGATCGTGATGATGA--TATA-----------------------------------------------------------------------------------------------------------------------------G-GCAAACGGCAGCAGCAAC-------------------------------------TGG------------------------------------------CGG-T-AG--TGGG----TCA--------------AA-T--T----------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATAATAA-TAATAATAATAATAATAATTAT--------------------AA------------------------------------------TAATAATAAAATTAATAGTAATAATAATAG----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA------------------------TA--------ATAA---------T---A----AT---------------A---ATAATAATAATAATAATGTTAATAATAATAAT----------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------ATG-----------------TA-T----------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................T--------------------AA------------------------------------------TAATAATAAAATTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ATAATAATAATAATAATAA......................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------A---ATAATAATAATAATAATGTT....................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GATGCTGCTAGTGGCAACAGCAACAGCAGC--AGCAAACCCAGCACGAGCACACGAGATAAGCTAGGCGAGGTGCCGCTGCCGACTGTTGA---C-----------------------------------------------------------------------------------------------------------------------------------------------------AGC---AACCACATCATCAGCAACAACAATAATAATAATAACAATAACAACA---------------CA---AATAATAATAACAACAACAACCACCACAGTGATAATAGTATTAGTGAGAATAGTTA------------------------TGAATTT--------------------A----AG---------------A---GTAGAGATAAAGCAAGTCTAAGTGATAGCAAAATGACGCTACAACAG-------------------------------------------------------ATG-GCAGCAGTCAGCAGCAACCAGGA--------------GCCA-G------------TGG------------------------------------------C-TCCCAA--TGTG----GCCAACACGATGAGCAACT-C--G----------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------A----AG---------------A---GTAGAGATAAAGCAAGTCTA....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------A----AG---------------A---GTAGAGATAAAGCAAGTCTA....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGATAATAGTATTAGTGAGAATAGT.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TAGTTA------------------------TGAATTT--------------------A----AG---------------A---GTAGAGATAA..............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TTT--------------------A----AG---------------A---GTAGAGATAAAGCAAGTCTA....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACACGATGAGCAACT-C--.................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AGCAACAACAATAATAATAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATAAAGCAAGTCTAAGT.................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA------------------------TGAATTT--------------------A----AG---------------A---GTAGAGATAAAGCA..........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TAATAGTATTAGTGAGAATAGTTA------------------------TGAAT........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................CTAGGCGAGGTGCCGCTGCCGACTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GCTGCCGACTGTTGA---C-----------------------------------------------------------------------------------------------------------------------------------------------------AGC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ACACGAGATAAGCTAGGCGAGGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTCTAAGTGATAGC...........................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AACAGCAACAGCAGC--AGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GTAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATACTAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAGGAATA-ATGATAAT---------------------------------------AA------TA---------------AT---A------------------ATATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--G-----AT------------------AATAATAATAAT------------AATA-----GTAACAAT--GATAA-----T----------------AATAATAATATTA--------------------GTG-ATAATAATTAATAATAATAAT-AATCAATAATACTAATAATCC------------TAA------------------------------------------T---------AATA----ATA--------------AT-A--A----------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----ATGTTGGGTCAAAACCCAATTATAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

ATAATAA-TAATAATAATAATAATAATAAT--------------------AA------------------------------------------TAATAATAATAATAATAATAATAATAATAA----------------------------------------------------------------------------------------------------------TAATAATA-ATAATAAT---------------------------------------AA------TA---------------AT---A------------------ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------TAATA-----ATAATAA---------T--A-----AT------------------TATAATAATA------------------ATAAT-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------A--TAGA----GTA--------------TT-T--A----------GCTCGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------A--TAGA----GTA--------------TT-T--A----------GCT...	20	1	1.00	1	1	0	0	0	0	0	0

dwi_1142

scf2_1100000004516:712751-712907 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-29.5	-29.5	-29.5