ID:

dwi_1141

 Coordinate:

scf2_1100000004516:683031-683181 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.3 -25.2

Flybase annnotation

exon [dwil_GLEANR_7765:1]; CDS [Dwil\GK23806-cds]; intron [Dwil\GK23806-in]; Antisense to intron [Dwil\GK23870-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCATCAACCACGCCTTTTGTCGTCAAGGATTCTTACAGTCGTGTCCAAGGTGAGCAAATACAAAACCGAAACCACAAAAATACAGTAAATTTACACGCAGCCATCACACACTTACACACAACTTAAAATCTGTGTGAACGTGCATGTTTGTATGTATGTGTGCACCAGCCCCCACACTCCGCGTAGTTTGTTTTTTGTTGTTTTTGTTTTTGCAAGAATTTAAAAATAGCCCCAGGCTGATTTGCTGGTT
**************************************************................................((((.((((..((((((.....(((((((....................)))))))(((((((....))))))).((((.((....))...))))....)))).))..)))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 M020
head
 V118
embryo
 V119
head
..CATCAACCACGCCTTTTGTCGT................................................................................................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0
..CATCAACCACGCCTTTTGTC..................................................................................................................................................................................................................................... 20 0 1 3.00 3 0 3 0 0 0
.....................CGTCAAGGATTCTTACAGT................................................................................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0
......................GTCAAGGATTCTTACAGTCGT................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 1 0 0
...ATCAACCACGCCTTTTGTCGTC.................................................................................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0
.....................CGTCAAGTATTCTTACAGTCGTGTC............................................................................................................................................................................................................. 25 1 1 2.00 2 0 0 2 0 0
.....CAACCACGCCTTTTGTCGT................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
................................CTTACAGTCGTGTCCAAGAA....................................................................................................................................................................................................... 20 2 2 1.50 3 2 1 0 0 0
..CATCAACCACGCCTTTTGTCGTCAAG............................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..CATCAACCACGCCTTTTGTCGTC.................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0
.......................TCAAGGATTCTTACAGTCGTGTC............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
..........................GGGATTCTTACAGTCGTGTCC............................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
......................GTCAAGGATTCTTACAGTC.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
.............................ATTCTTACAGTCGTGTCCAAG......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0
......AACCACGCCTTTTGTCGT................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
........................CAAGGATTCTTACAGTCGTGTC............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.............................ATTCTTACAGTCGTGTCCAA.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.................TTGTCGTCAAGGATTCTTACAGTCGTGTC............................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0
...............................................................................................................................AATCTGTGTGAACGTGCA.......................................................................................................... 18 0 1 1.00 1 0 0 0 1 0
............................GATTCTTACAGTCGTGTCCAAG......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1
.............................ATTCTTACAGTCGTGTCCAAGA........................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0
...ATCAACCACGCCTTTTGTCGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...................GTCGTCAAGGATTCTTACAGTCGTGTCCA........................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
..............CTTTTGTCGTCAAGGATT........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
.................................TTCCGGTCGTGTCCACGGTG...................................................................................................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0
..........................TGGATTCTTACAGGGGTGT.............................................................................................................................................................................................................. 19 3 10 0.10 1 0 1 0 0 0
...............................................................................................................................................................................CGCTCCGCGTAGATTGTG.......................................................... 18 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CGGTAGTTGGTGCGGAAAACAGCAGTTCCTAAGAATGTCAGCACAGGTTCCACTCGTTTATGTTTTGGCTTTGGTGTTTTTATGTCATTTAAATGTGCGTCGGTAGTGTGTGAATGTGTGTTGAATTTTAGACACACTTGCACGTACAAACATACATACACACGTGGTCGGGGGTGTGAGGCGCATCAAACAAAAAACAACAAAAACAAAAACGTTCTTAAATTTTTATCGGGGTCCGACTAAACGACCAA
**************************************************................................((((.((((..((((((.....(((((((....................)))))))(((((((....))))))).((((.((....))...))))....)))).))..)))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
...............................................................................................................................................................ACACGTGGTCGGGGGTGTGAGGC..................................................................... 23 0 1 1.00 1 1 0 0
.......................................................................................................................................................................TCGGGGGTGCGGGTCGCATC................................................................ 20 3 2 0.50 1 1 0 0
...................................................................................................TCGGTAGTGTGTGAACGTAT.................................................................................................................................... 20 2 3 0.33 1 0 1 0
...................................................................................................TCGGTAGTGTGTGAACGTA..................................................................................................................................... 19 2 4 0.25 1 0 1 0
....................................................................................................CGGTAGTGTGTGAACGTA..................................................................................................................................... 18 2 8 0.13 1 0 1 0
.............................................................................................................................................................ACAGACGTGGTCGTGGGT............................................................................ 18 2 10 0.10 1 1 0 0
...............................................................................................................................................................ATACGTGGTCGTGGGTGT.......................................................................... 18 2 20 0.10 2 2 0 0
...TGGTTGGTGCGGAAAAAA...................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 1
.....................................................................................................GGTAGTGTGTGAACGTATG................................................................................................................................... 19 2 11 0.09 1 1 0 0
....................................................................................................................................................................AGGTCGGTGGTGTGCGGCG.................................................................... 19 3 20 0.05 1 1 0 0
...............................................................................................GGAATCGGTAGTGTGTGAA......................................................................................................................................... 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004516:682981-683231 - dwi_1141 GCCATCAA------CCACGCCTTTTGTCGTCAAGGATTCTTACAGTCGTGTCCAAGGTGAG-CAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-AACCGAAAC-CA--------------CAAAAATACAGTAA-ATT---TACACGCAGCCA------------------------------------------------TCACACACTTACACACAACTTAAAATCTGTGTGAACGTGCATGTTTGTATGTATGTGT--GCACCAGCCCCCAC------ACTCC-----GCGTAGTTT------GT-----------T--TTTTGTTGT--TTTTGTTTTTGCAAGAATTTAAAAATAGCCCCAGGCTGATTTGCTGGTT-------------------------------------
droVir3 scaffold_12723:4619896-4620063 - AAAATGCATTTGTGTATGTATATGTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTCACATGA-----CAGCTACATACAGGCGCTCATTTGCTGTT-GT-T-A------ATACCCGCATTGT----GTGTTTTTGCAAGAATTTAAAAATAGCC--GCAATA-CTTATTGAAAATTCTCTTTCTGTGTATGTACATGCATATGTATGGTG
droMoj3 scaffold_6500:10589729-10589914 - GCACGCAAACAGTGCCAGCGCATATCCGGCCAAGGACTCCTACAGTCGAGTGCAAGGTATT-TTGA--------------------------------------------------------GCAA----------------------------------------------------------------------------------------------------ATTACATT---ATTC----------------A--T------AAAACCA--------------AGA-AATAA--T---------------AG--------------CGAAG----ACATCTAATTTGTTCTCATGCGTACGCTTACAATGCAACGTGT----------------------------------------------------------------------T------TTTG-A------TAGCGTGTAGCAT--------------------------A----------------------------------------TAT----GCACATGTATGTCA
droGri2 scaffold_15126:3572500-3572816 - GCATTCAAGCAGCGCCAGTCCGTATTCAACTAAGGATTCATACAGCAGAGTGCAAGGTAAT-TAAAAAAAAAAAAAATAATGCTGGTGAAAGGCAACTC-----------------------ACAATGCAAGC--GTGC------------------------GTCAGGCAAATGCAGTCATTATTCATGGCAGTTAGCTTTTTGTCATGCATATG-C-A------GATGTGTA---AAG--------------------------------------------------TA---TACGTGAA-----------C---AAAACGCA----------------------------------------------------------------------------------------TACACACACAAGCACGCACACACACACACACACTCAGTTTATGTTCACTTGATTCTGATTACCCACATTGTG-AGTTGTTTTTGCACTCATTTAAAAATAGCC--GCGATGTTTTTTTGAAT-------------------------------------
dp5 4_group4:3573780-3574010 + dps_1676 GTCGTCCAGCGCAGCATCCTCATGTGCCGTCAAGGATTCCTACAGTCGCGTCCAAGGTAAT-TATCG-----TTC-----------------------------------------------------------------------------------------------------------------------AGAGCTTTTCGTCGCC-------------ACCGCTGCACA---GCAGAGAGAGAGAGCAAAAC-AA--------------CAAAAACAT------GTT---TAAAAGCACCAACAAAAAT-AAGAAAA---------CCA-G--------------------------------------------------------------------------------------CCCCCCATTT-------------------------------T-A------TTGCGTGTATTGT--GGTTGTTTTTGTGAGAATTTAAAAATAGAC--AGCCTGATTTGATGTC--------------------------------------
droPer2 scaffold_10:2602820-2603050 + dpe_626 GTCGTCCAGCGCAGCATCCTCATGTGCCGTCAAGGATTCCTACAGTCGCGTCCAAGGTAAT-TATCG-----TTC-----------------------------------------------------------------------------------------------------------------------AGAGCTTTTCGTCGCC-------------ACCGCTGCACA---GCAGAGAGAGAGAGCAAAAC-AA--------------CAAAAACAT------GTT---TAAAAGCACCAACAAAAAT-AAGAAAA---------CCA-G--------------------------------------------------------------------------------------CCCCCCATTT-------------------------------T-A------TTGCGTGTATTGT--GGTTGTTTTTGTGAGAATTTAAAAATAGAC--AGCCTGATTTGATGTC--------------------------------------
droAna3 scaffold_12916:8726779-8727067 + dan_609 GTCCACCA------CCTCGCCCTATGCGGTCAAGGACTGCTATAGCCGCGTCCAAGGTAAC-TATCAC-------------------------------------------------------CGGAAGA-GA--CTCC-----A---T---CGGAGCTCCACTCCAGTC----------G--TGTCATAGCCTCCAGCTTTCAGTCAGTCAGTCGCCAT------AATGCACTATTGGGT----------------T--A------AA--------AAACAT------GTT---TTGCA------------------------------TT--CAGTATGTG-------TGTGT----------------------------------------------GTGTGT--GAGTGTGCCCCCACCACCACCTCCCCACCCC-----ACCACAGTT------GTGA-A------TTGCGTGTATTAT--TGTTGTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCGCG----------------------------------------
droBip1 scf7180000396535:1267714-1267987 + GTCCACCA------CATCGCCTTATGCGGTCAAGGACTGCTACAGCCGTGTCCAAGGTAAT-TATCTC------------------------------------------------------CCGAAAAAAGA--CTCC------------------------TCCAGTCGCATCCACTTGAGTGGCATAGCCGACAGCTTTTAGTCAGTCACTCGCCAT------AATGCATT---GGCT----------------T--TTAAGAAAA--------AAACAT------GTT---TGGCA------------------------------------TTATGGG-------TGT----------------------------------------------------GT--GAGT--GAA----CCCCCCCT-----GCTCC-ACC-ACCCCAGTT------GTGA-A------TTGCGTGTATTGT--TGTTGTTTTTGAAAGAATTTATAAATAGCC--AGCCTGATTTCGC-----------------------------------------
droKik1 scf7180000302382:931514-931823 - GACCACCA------CATCCCCGTATGCGGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAT-TGACGGGGC------------------------------------------CCCAAAA------------------------------AGTAGCG------ATTAGCG--A-----TAGTCACTCGGAGCAGGCAGCTTGCAGTCAGGGACTCG-C-AGTCGTAAGTGC---------------------------AGC------AA--------AAACAT------GCT---TTCGAGTA-----------G---AAAATACATACATA--CACTATGTG-------C------------------------------------A---ATACATATTCACACGTACGATG--GCACCCGCCCCCCTTTCGGAGCTCC-----GCTCACTTT------GTGA-A------TTGCGTGCGTTGTT-TGTTGTTTTTGCGAAAATTTATAAATAGCC--AGCCCGATTTTTCGTCT-----------------GT----G-------------
droFic1 scf7180000454082:584635-584892 - GACCACGT------CCTCTCCACACGCGGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAACTTTTG-----TTCGGAATCGGGGAA----GCCT-------C----------CCCAAAA--------AGGGAGATAACT---TA---TACATAGC------------------------------TATATCAGTTAGCTTTCAGTCGCAGTC--C--------CCAATGCACT---GAGC----------------A--AAAAA--AA--------AAACAG--A--AGA-GATA---A-------------------------------A--CAGCATGTT-------GGTGTT-------------------------------------------------------------------------------------------------G------GTGG-A------CTGCGTGTGTTGCT-TGTTGTTTTTGCAAGAGTTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------------------------------
droEle1 scf7180000491028:1868764-1869022 - ATCCACCA------CATCCCCTCATGCGGTCAAAGATTGCTACAGTCGAGTGCAAGGTAAT-TTTT---------------TTTGGTCAG-ACCATCTCCAT-AAGGCGGTAATCCAA------------------------------ACCATAGTT-----------------------------AAAAGCGTTAAACTTTGAATCGTATACGCG-C-A------AATGCACT---GGGG----------------A--A------AAAAACA--------------AGA-GATAA--A---------------GA--------------AAAAAGCACGTTCCTCAGTTGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGTTGTT-TGTTGTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCTTGGTC-------------------------------------
droRho1 scf7180000780252:572-805 + ATCCACCA------CATCCCCTCATGCGGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAT-TTTTG-----TGG--------------ATAGCATCTG-----------------------T---AAATGGAGA-----------------------------------------------------TAGCGGTTAAACTACTGTCGCATACCCT-C-A------AATGCACT---GGGG----------------A--A------AAAAC-A--------------AGA-GATA---A----------------A--------------GAAAAGCACGTTCCGTAGTTGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGGTGTT-TGTTGTTTTTGCAAGAGTTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------------------------------
droBia1 scf7180000302408:995108-995320 - GTCCACCA------GTTCCCCCCATGCGGTCAAGGATTGCTACAGCCGAGTGCAAGGTAAT-TTGG--------------------------------------------------------GCGATAA---------CC---TG--------------------------------------------------CA-----GGGTCGCATAGCACCCAA------AATGCACT---GCGC----------------G--G------AAAACGT--------------AGA-GATA---A---------------AA--------------CCAGGGCACGTTCCGCGCCTGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGTTGTT-CGTTGTTTTTGCAAGCACTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------------------------------
droTak1 scf7180000415115:403644-403884 + GTCCACCA------ATTCCCCGCATGCTGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAA-AATA---------------TGGGGT---------------C----------CCTAAAAAGGCGATAA---------CC---TA-----------------------------------------TAGACCACTGAGCTTTTCGTCATCCTGTGGGTAG------AATGCACT---GGGG----------------A--A------AAAAT----------------AGA-GATA---A---------------AA--------------CCAGAGCACGTTCCTTGGTGGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGTTGTT-TGTTGTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCTTGGTC-------------------------------------
droEug1 scf7180000409752:1078912-1079171 - ATCCACAA------CCTCTCAGCATGCGGTCAAGGATTGTTACAGTCGAGTGCAAGGTAAT-TTACTTTTCCTTTAGTATTTGGGAT----------------GAG----------------GCGACAA---------CC---TCCTACTGACTGCT---------------A-------------TATAGCACATAGCTTTCAGTCGTTTATCAGAT-A------AATGCACT---GGGG----------------A--A------AAAGA----------------AGA-CA--A--A---------------AA--------------CCAGAGCACGTTTCTCAGATGTATT-------------------------------------------------------------------------------------------------T------GTGA-G------TTGCGTGTGTTGTT-TGTGTTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCTTAGCT-------------------------------------
dm3 chr2L:20084410-20084627 - GTCCACCA------CTTCCTCACACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGAAAAAACAGA---------------------------------------------------------------------------TAGCGCTCAG------AATGCACT---GGCA----------------A--A------AAAGGGG--------------CGA-GATTG--A---------------AA--------------GCA-GACGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------T------GTGT-A------TTGCGTGTGTTGTTTTGTTGTTTTTGCAACCATTTATAAATAGCC--AGCCTGATTTCTTAGCC-------------CCATGT----GCATA---------
droSim2 2l:19576265-19576480 - dsi_23906 GTCCACCA------CCTCCTCGCACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAAT-TTTG--------------------------------------------------------GCGAAAAACCAGA---------------------------------------------------------------------------TAGCACTCAG------AATGCACT---GGCA----------------A--A------AAGGGGG--------------CGA-GATTA--A----------------A--------------ACCGGGCGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------C------GTGT-A------TTGCGTGTGTTGTT-TGTTGTTTTTGCAACCATTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------CCATGT----GCATA---------
droSec2 scaffold_7:3696977-3697193 - GTCCACCA------CCTCCTCGCACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGAAAAACCAGA---------------------------------------------------------------------------TAGCACTCAG------AATGCACT---GGCA----------------A--A------AAGGGGG--------------CGA-GTTTA--A---------------AA--------------CCA-GGCGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------C------GTGT-A------TTGCGTGTGTTGTT-TTTTGTTTTTGCAACCATTTATAAATACCC--AGCCTGATTTCTTGGCC-------------CCATGT----GCATA---------
droYak3 2R:6556259-6556492 - GTCCACCA------CCTCCTCACATGCGGTCAAGGACTGTTACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGACAAGCAAGATAGCTCCGTA---CAC---------------------A-----------------------------------TATCGCGCACAG------AATGCACT---GTCA----------------A--A------AAAGGAG--------------CGA-GATA--------------------A--------------GCAAGGCGCGTTTCCAACTTGTATT-------------------------------------------------------------------------------------------------C------AAGT-A--TTGCGTGCGTGTGTTGTT-TGTTGTTTTTGCAACAATTTATAAATAGCC--AGCCTGATTTCTTGGCC--------------CATGT----GCATT---------
droEre2 scaffold_4845:4245708-4245761 + GTCCACCA------ACTCCTCACACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GCCATCAA------CCACGCCTTTTGTCGTCAAGGATTCTTACAGTCGTGTCCAAGGTGAG-CAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-AACCGAAAC-CA--------------CAAAAATACAGTAA-ATT---TACACGCAGCCA------------------------------------------------TCACACACTTACACACAACTTAAAATCTGTGTGAACGTGCATGTTTGTATGTATGTGT--GCACCAGCCCCCAC------ACTCC-----GCGTAGTTT------GT-----------T--TTTTGTTGT--TTTTGTTTTTGCAAGAATTTAAAAATAGCCCCAGGCTGATTTGCTGGTT-------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..CATCAA------CCACGCCTTTTGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.00400400
..CATCAA------CCACGCCTTTTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00303000
...........................CGTCAAGGATTCTTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000
............................GTCAAGGATTCTTACAGTCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00210100
...ATCAA------CCACGCCTTTTGTCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200
.....CAA------CCACGCCTTTTGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
......................................CTTACAGTCGTGTCCAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.50301200
..CATCAA------CCACGCCTTTTGTCGTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
..CATCAA------CCACGCCTTTTGTCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................TCAAGGATTCTTACAGTCGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
............................GTCAAGGATTCTTACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...................................ATTCTTACAGTCGTGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......AA------CCACGCCTTTTGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..............................CAAGGATTCTTACAGTCGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................ATTCTTACAGTCGTGTCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......................TTGTCGTCAAGGATTCTTACAGTCGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................AATCTGTGTGAACGTGCA.................................................................................................................................................................................1811.00100010
..................................GATTCTTACAGTCGTGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
...................................ATTCTTACAGTCGTGTCCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
...ATCAA------CCACGCCTTTTGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................GTCGTCAAGGATTCTTACAGTCGTGTCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
....................CTTTTGTCGTCAAGGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
droVir3
AAAATGCATTTGTGTATGTATATGTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTCACATGA-----CAGCTACATACAGGCGCTCATTTGCTGTT-GT-T-A------ATACCCGCATTGT----GTGTTTTTGCAAGAATTTAAAAATAGCC--GCAATA-CTTATTGAAAATTCTCTTTCTGTGTATGTACATGCATATGTATGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCACATGA-----CAGCTACATACAGGC................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATTTAAAAATAGCC--......................................................1811.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAAGAATTTAAAAAT............................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACATGA-----CAGCTACATAC....................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
GCACGCAAACAGTGCCAGCGCATATCCGGCCAAGGACTCCTACAGTCGAGTGCAAGGTATT-TTGA--------------------------------------------------------GCAA----------------------------------------------------------------------------------------------------ATTACATT---ATTC----------------A--T------AAAACCA--------------AGA-AATAA--T---------------AG--------------CGAAG----ACATCTAATTTGTTCTCATGCGTACGCTTACAATGCAACGTGT----------------------------------------------------------------------T------TTTG-A------TAGCGTGTAGCAT--------------------------A----------------------------------------TAT----GCACATGTATGTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................GCCAAGGACTCCTACAGTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............GCCAGCGCATATCCGGCCAAGGACTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.......................ATCCGGCCAAGGACTCCTACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............CAGCGCATATCCGGCCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........GTGCCAGCGCATATCCGGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..ACGCAAACAGTGCCAGCGCATATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................ATCCGGCCAAGGACTCCTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........ACAGTGCCAGCGCATATCCGGCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................CCGGCCAAGGACTCCTACAGTCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................ACTCCTACAGTCGAGTGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........................CCGGCCAAGGACTCCTACAGTCGAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................GGCCAAGGACTCCTACAGTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........ACAGTGCCAGCGCATATCCGGCCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....................CATATCCGGCCAAGGACTCCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
GCATTCAAGCAGCGCCAGTCCGTATTCAACTAAGGATTCATACAGCAGAGTGCAAGGTAAT-TAAAAAAAAAAAAAATAATGCTGGTGAAAGGCAACTC-----------------------ACAATGCAAGC--GTGC------------------------GTCAGGCAAATGCAGTCATTATTCATGGCAGTTAGCTTTTTGTCATGCATATG-C-A------GATGTGTA---AAG--------------------------------------------------TA---TACGTGAA-----------C---AAAACGCA----------------------------------------------------------------------------------------TACACACACAAGCACGCACACACACACACACACTCAGTTTATGTTCACTTGATTCTGATTACCCACATTGTG-AGTTGTTTTTGCACTCATTTAAAAATAGCC--GCGATGTTTTTTTGAAT-------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....CAAGCAGCGCCAGTCCGTATTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202
..............CCAGTCCGTATTCAACTAAGGATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACATTGTG-AGTTGTTTTTG...........................................................................2211.00110
............................ACTAAGGATTCATACAGCAGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101
dp5
GTCGTCCAGCGCAGCATCCTCATGTGCCGTCAAGGATTCCTACAGTCGCGTCCAAGGTAAT-TATCG-----TTC-----------------------------------------------------------------------------------------------------------------------AGAGCTTTTCGTCGCC-------------ACCGCTGCACA---GCAGAGAGAGAGAGCAAAAC-AA--------------CAAAAACAT------GTT---TAAAAGCACCAACAAAAAT-AAGAAAA---------CCA-G--------------------------------------------------------------------------------------CCCCCCATTT-------------------------------T-A------TTGCGTGTATTGT--GGTTGTTTTTGTGAGAATTTAAAAATAGAC--AGCCTGATTTGATGTC--------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............ATCCTCATGTGCCGTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
............................GTCAAGGATTCCTACAGTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...GTCCAGCGCAGCATCCTCATGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................GCCGTCAAGGATTCCTACAGTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................CATGTGCCGTCAAGGATTCCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
....................CATGTGCCGTCAAGGATTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............CATCCTCATGTGCCGTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............AGCATCCTCATGTGCCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............ATCCTCATGTGCCGTCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................GATTCCTACAGTCGCGTCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................CTCATGTGCCGTCAAGGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......AGCGCAGCATCCTCATGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................GATTCCTACAGTCGCGTCCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
...GTCCAGCGCAGCATCCTCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............AGCATCCTCATGTGCCGTCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................GCCGTCAAGGATTCCTACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................GTGCCGTCAAGGATTCCTACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
GTCGTCCAGCGCAGCATCCTCATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................GTCAAGGATTCCTACAGTCGCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGT--GGTTGTTTTTGTGT........................................................................2020.5010000001000
droPer2
GTCGTCCAGCGCAGCATCCTCATGTGCCGTCAAGGATTCCTACAGTCGCGTCCAAGGTAAT-TATCG-----TTC-----------------------------------------------------------------------------------------------------------------------AGAGCTTTTCGTCGCC-------------ACCGCTGCACA---GCAGAGAGAGAGAGCAAAAC-AA--------------CAAAAACAT------GTT---TAAAAGCACCAACAAAAAT-AAGAAAA---------CCA-G--------------------------------------------------------------------------------------CCCCCCATTT-------------------------------T-A------TTGCGTGTATTGT--GGTTGTTTTTGTGAGAATTTAAAAATAGAC--AGCCTGATTTGATGTC--------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................ATTCCTACAGTCGCGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
....................CATGTGCCGTCAAGGATTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
............................GTCAAGGATTCCTACAGTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droAna3
GTCCACCA------CCTCGCCCTATGCGGTCAAGGACTGCTATAGCCGCGTCCAAGGTAAC-TATCAC-------------------------------------------------------CGGAAGA-GA--CTCC-----A---T---CGGAGCTCCACTCCAGTC----------G--TGTCATAGCCTCCAGCTTTCAGTCAGTCAGTCGCCAT------AATGCACTATTGGGT----------------T--A------AA--------AAACAT------GTT---TTGCA------------------------------TT--CAGTATGTG-------TGTGT----------------------------------------------GTGTGT--GAGTGTGCCCCCACCACCACCTCCCCACCCC-----ACCACAGTT------GTGA-A------TTGCGTGTATTAT--TGTTGTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCGCG----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................GT----------------T--A------AA--------AAACAT------GTT---TTGCA------------------------------TT--CAGT...........................................................................................................................................................................................................................................2611.001000010
...........................GGTCAAGGACTGCTATAGCCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................GCCCTATGCGGTCAAGGACTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
..............................CAAGGACTGCTATAGCCGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGTT------GTGA-A------TTGCGT...............................................................................................2011.001000010
.........................................................................................................................................CC-----A---T---CGGAGCTCCACTCCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................GGTCAAGGACTGCTATAGCCGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
GTCCACCA------CCTCGCCCTATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................TG-------TGTGT----------------------------------------------GTGTGT--GAGTGT..............................................................................................................................................................19200.102000002
................................................................................................................................................................................................................................................................................................................................................GTATGTG-------TGTGT----------------------------------------------GTGTGT--GAG.................................................................................................................................................................21160.061100000
...................................................................................................................................................................................................................................................................................................................................................TGTG-------TGTGT----------------------------------------------GTGTGT--GAGT................................................................................................................................................................19200.051000001
....................................................................................................................................................................................................................................................................................................................................................GTG-------TGTGT----------------------------------------------GTGTGT--GAGTGTG.............................................................................................................................................................21200.051000001
.....................................................................................................................................................................................................................................................................................................................................................TG-------TGTGT----------------------------------------------GTGTGT--GAGTGTG.............................................................................................................................................................20200.051100000
droBip1
GTCCACCA------CATCGCCTTATGCGGTCAAGGACTGCTACAGCCGTGTCCAAGGTAAT-TATCTC------------------------------------------------------CCGAAAAAAGA--CTCC------------------------TCCAGTCGCATCCACTTGAGTGGCATAGCCGACAGCTTTTAGTCAGTCACTCGCCAT------AATGCATT---GGCT----------------T--TTAAGAAAA--------AAACAT------GTT---TGGCA------------------------------------TTATGGG-------TGT----------------------------------------------------GT--GAGT--GAA----CCCCCCCT-----GCTCC-ACC-ACCCCAGTT------GTGA-A------TTGCGTGTATTGT--TGTTGTTTTTGAAAGAATTTATAAATAGCC--AGCCTGATTTCGC-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GACCACCA------CATCCCCGTATGCGGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAT-TGACGGGGC------------------------------------------CCCAAAA------------------------------AGTAGCG------ATTAGCG--A-----TAGTCACTCGGAGCAGGCAGCTTGCAGTCAGGGACTCG-C-AGTCGTAAGTGC---------------------------AGC------AA--------AAACAT------GCT---TTCGAGTA-----------G---AAAATACATACATA--CACTATGTG-------C------------------------------------A---ATACATATTCACACGTACGATG--GCACCCGCCCCCCTTTCGGAGCTCC-----GCTCACTTT------GTGA-A------TTGCGTGCGTTGTT-TGTTGTTTTTGCGAAAATTTATAAATAGCC--AGCCCGATTTTTCGTCT-----------------GT----G-------------SizeHit CountTotal NormTotal
No Reads
droFic1
GACCACGT------CCTCTCCACACGCGGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAACTTTTG-----TTCGGAATCGGGGAA----GCCT-------C----------CCCAAAA--------AGGGAGATAACT---TA---TACATAGC------------------------------TATATCAGTTAGCTTTCAGTCGCAGTC--C--------CCAATGCACT---GAGC----------------A--AAAAA--AA--------AAACAG--A--AGA-GATA---A-------------------------------A--CAGCATGTT-------GGTGTT-------------------------------------------------------------------------------------------------G------GTGG-A------CTGCGTGTGTTGCT-TGTTGTTTTTGCAAGAGTTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATCCACCA------CATCCCCTCATGCGGTCAAAGATTGCTACAGTCGAGTGCAAGGTAAT-TTTT---------------TTTGGTCAG-ACCATCTCCAT-AAGGCGGTAATCCAA------------------------------ACCATAGTT-----------------------------AAAAGCGTTAAACTTTGAATCGTATACGCG-C-A------AATGCACT---GGGG----------------A--A------AAAAACA--------------AGA-GATAA--A---------------GA--------------AAAAAGCACGTTCCTCAGTTGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGTTGTT-TGTTGTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCTTGGTC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATCCACCA------CATCCCCTCATGCGGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAT-TTTTG-----TGG--------------ATAGCATCTG-----------------------T---AAATGGAGA-----------------------------------------------------TAGCGGTTAAACTACTGTCGCATACCCT-C-A------AATGCACT---GGGG----------------A--A------AAAAC-A--------------AGA-GATA---A----------------A--------------GAAAAGCACGTTCCGTAGTTGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGGTGTT-TGTTGTTTTTGCAAGAGTTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTCCACCA------GTTCCCCCCATGCGGTCAAGGATTGCTACAGCCGAGTGCAAGGTAAT-TTGG--------------------------------------------------------GCGATAA---------CC---TG--------------------------------------------------CA-----GGGTCGCATAGCACCCAA------AATGCACT---GCGC----------------G--G------AAAACGT--------------AGA-GATA---A---------------AA--------------CCAGGGCACGTTCCGCGCCTGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGTTGTT-CGTTGTTTTTGCAAGCACTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTCCACCA------ATTCCCCGCATGCTGTCAAGGATTGCTACAGTCGAGTGCAAGGTAAA-AATA---------------TGGGGT---------------C----------CCTAAAAAGGCGATAA---------CC---TA-----------------------------------------TAGACCACTGAGCTTTTCGTCATCCTGTGGGTAG------AATGCACT---GGGG----------------A--A------AAAAT----------------AGA-GATA---A---------------AA--------------CCAGAGCACGTTCCTTGGTGGTATT-------------------------------------------------------------------------------------------------T------GTGA-A------TTGCGTGTGTTGTT-TGTTGTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCTTGGTC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATCCACAA------CCTCTCAGCATGCGGTCAAGGATTGTTACAGTCGAGTGCAAGGTAAT-TTACTTTTCCTTTAGTATTTGGGAT----------------GAG----------------GCGACAA---------CC---TCCTACTGACTGCT---------------A-------------TATAGCACATAGCTTTCAGTCGTTTATCAGAT-A------AATGCACT---GGGG----------------A--A------AAAGA----------------AGA-CA--A--A---------------AA--------------CCAGAGCACGTTTCTCAGATGTATT-------------------------------------------------------------------------------------------------T------GTGA-G------TTGCGTGTGTTGTT-TGTGTTTTTTGCAAGAATTTATAAATAGCC--AGCCTGATTTCTTAGCT-------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GTCCACCA------CTTCCTCACACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGAAAAAACAGA---------------------------------------------------------------------------TAGCGCTCAG------AATGCACT---GGCA----------------A--A------AAAGGGG--------------CGA-GATTG--A---------------AA--------------GCA-GACGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------T------GTGT-A------TTGCGTGTGTTGTTTTGTTGTTTTTGCAACCATTTATAAATAGCC--AGCCTGATTTCTTAGCC-------------CCATGT----GCATA---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................GGTCAAGGACTGCTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000001000001000000000000000000000000
.................................................................................................................................................................................................................................................................................G--------------CGA-GATTG--A---------------AA--------------GCA-GACGCG........................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000100000000000000000000000000000000000
....................................CTGCTACAGTCGAGTGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTACAGTCGAGTGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................TCAAGGACTGCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGA---------------------------------------------------------------------------TAGCGCTCAG------AATGCAC....................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..........................CGGTCAAGGACTGCTACAGTCGAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAAAACAGA---------------------------------------------------------------------------TAGCGCTCAG------A..........................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GATTG--A---------------AA--------------GCA-GACGCGTTTCT...................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GA-GATTG--A---------------AA--------------GCA-GACGCGTT......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................CACGCGGTCAAGGACTGCTACAGTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCTCACACGCGGTCAAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAGGACTGCTACAGTCGAGTGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AT-TTTTG-------------------------------------------------------GCGAAAAAACAGA---------------------------------------------------------------------------T..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTG--A---------------AA--------------GCA-GACGCGTTT.....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAATAGCC--AGCCTGATTTCTTAGC......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TT-------------------------------------------------------------------------------------------------T------GTGT-A------TTGCGTGTGTTG.........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
GTCCACCA------CTTCCTCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATTTCTTAGCC-------------CCATGT----GCATA---------2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAGCC--AGCCTGATTTCT..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTATAAATAGCC--AGCCTG................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
................TCCTCACACGCGGTCAAGGACTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................A------AAAGGGG--------------CGA-GATTG--A---------------AA--------------GC................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCC--AGCCTGATTTCTTA........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGTCAAGGACTGCTACAGTCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TTGCGTGTGTTGTTTTGTTG.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................CGCGGTCAAGGACTGCTACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCACACGCGGTCAAGGACTGCTACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CCA------CTTCCTCACACGCGGTCAAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TACAGTCGAGTGCAAGGTAAT-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTT-------------------------------------------------------------------------------------------------T------GTGT-A------TTGCGTGTGTTG.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A------CTTCCTCACACGCGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GTCAAGGACTGCTACAGTCGAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................A--------------GCA-GACGCGTTTCTCACTT..............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................A---------------------------------------------------------------------------TAGCGCTCAG------AATGCACT---GG..............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTCACACGCGGTCAAGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCAAGGACTGCTACAGTCGAGTGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TG-------------------------------------------------------GCGAAAAAACAGA---------------------------------------------------------------------------TAGCGC.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CACACGCGGTCAAGGACTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CACCA------CTTCCTCACACGCGGTCAAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AGGGG--------------CGA-GATTG--A---------------AA--------------GCA-GACGCG........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTTTGTTGTTTTTGCAAC.......................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTCCACCA------CTTCCTCACACGCGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------T------.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................AGA---------------------------------------------------------------------------TAGCGCTCAG------AATGCA.....................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCACACGCGGTCAAGGACTGCTACAGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................A----------------A--A------AAAGGGG--------------CGA-GATTG--A---------------..................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCTACAGTCGAGTGCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................ACAGA---------------------------------------------------------------------------TAGCGCTCAG------AATGCC.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CACACGCGGTCAAGGACTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTCCACCA------CCTCCTCGCACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAAT-TTTG--------------------------------------------------------GCGAAAAACCAGA---------------------------------------------------------------------------TAGCACTCAG------AATGCACT---GGCA----------------A--A------AAGGGGG--------------CGA-GATTA--A----------------A--------------ACCGGGCGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------C------GTGT-A------TTGCGTGTGTTGTT-TGTTGTTTTTGCAACCATTTATAAATAGCC--AGCCTGATTTCTTGGCC-------------CCATGT----GCATA---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................CGCACGCGGTCAAGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00411200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-TGTTGTTTTTGCAACC......................................................................1913.00300300000000000000
.....................GCACGCGGTCAAGGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00321000000000000000
............................GTCAAGGACTGCTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00303000000000000000
....................CGCACGCGGTCAAGGACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201100000000000000
.....................GCACGCGGTCAAGGACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
..............................CAAGGACTGCTACAGTCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...............................AAGGACTGCTACAGTCGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...CACCA------CCTCCTCGCACGCGGTCAAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
....................CGCACGCGGTCAAGGACTGCTACAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.......A------CCTCCTCGCACGCGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
...........................GGTCAAGGACTGCTACAGTCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..............................CAAGGACTGCTACAGTCGAGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.....................................................................................................................................................................................................................................................................................................ATTA--A----------------A--------------ACCGGGCGCGTT......................................................................................................................................................................................................................................1811.00100001000000000000
..................................GACTGCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
................TCCTCGCACGCGGTCAAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................GCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTT-TGTTGTTTTTGCAA........................................................................2111.00100000001000000000
...................................ACTGCTACAGTCGAGTGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
............................GTCAAGGACTGCTACAGTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................CGCACGCGGTCAAGGACTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...........................GGTCAAGGACTGCTACAGTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
....................CGCACGCGGTCAAGGACTGCTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................GGTCAAGGACTGCTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
...........................GGTCAAGGACTGCTACAGTCGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..................CTCGCACGCGGTCAAGGACTGCTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..................CTCGCACGCGGTCAAGGACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
GTCCACCA------CCTCCTCGCACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGAAAAACCAGA---------------------------------------------------------------------------TAGCACTCAG------AATGCACT---GGCA----------------A--A------AAGGGGG--------------CGA-GTTTA--A---------------AA--------------CCA-GGCGCGTTTCTCACTTGTTTT-------------------------------------------------------------------------------------------------C------GTGT-A------TTGCGTGTGTTGTT-TTTTGTTTTTGCAACCATTTATAAATACCC--AGCCTGATTTCTTGGCC-------------CCATGT----GCATA---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................GCACGCGGTCAAGGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...........................GGTCAAGGACTGCTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
GTCCACCA------CCTCCTCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...............................................GAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
......................................GCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................CGCACGCGGTCAAGGACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
......CA------CCTCCTCGCACGCGGTCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................TCCTCGCACGCGGTCAAGGACTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...........................GGTCAAGGACTGCTACAGTCGAGTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
....................CGCACGCGGTCAAGGACTGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
droYak3
GTCCACCA------CCTCCTCACATGCGGTCAAGGACTGTTACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGACAAGCAAGATAGCTCCGTA---CAC---------------------A-----------------------------------TATCGCGCACAG------AATGCACT---GTCA----------------A--A------AAAGGAG--------------CGA-GATA--------------------A--------------GCAAGGCGCGTTTCCAACTTGTATT-------------------------------------------------------------------------------------------------C------AAGT-A--TTGCGTGCGTGTGTTGTT-TGTTGTTTTTGCAACAATTTATAAATAGCC--AGCCTGATTTCTTGGCC--------------CATGT----GCATT---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-A--TTGCGTGCGTGTGTTGTT-T.....................................................................................2212.00202000000000
.............................................................................................................................................................................................................................................................................................................................................................TTGTATT-------------------------------------------------------------------------------------------------C------AAGT-A--TTGCGTGCGTGTGTT..........................................................................................2811.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-A--TTGCGTGCGTGTGTTG.........................................................................................1911.00100000010000
................................................................................................................................................................................................................................................A----------------A--A------AAAGGAG--------------CGA-GATA--------------------A--------------GCAAGGCGC.........................................................................................................................................................................................................................................2711.00100000010000
.........................................ACAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATAAATAGCC--AGCCTG................................................2111.00101000000000
..........................................CAGTCGAGTGCAAGGTAAT-TTTTG-------------------------------------------------------GCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...CACCA------CCTCCTCACATGCGGTCAAGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
..............CCTCCTCACATGCGGTCAAGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AAGT-A--TTGCGTGCGTGTGTTGTT-TGTT..................................................................................2811.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................GTATT-------------------------------------------------------------------------------------------------C------AAGT-A--TTGCGTGCGTGTGTT..........................................................................................2611.00100000010000
...........................GGTCAAGGACTGTTACAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..CCACCA------CCTCCTCACATGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................CCTCACATGCGGTCAAGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................TGTATT-------------------------------------------------------------------------------------------------C------AAGT-A--TTGCGTGCGTGTGTTGT........................................................................................2911.00100000010000
...........................GGTCAAGGACTGTTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
GTCCACCA------ACTCCTCACACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................GGTCAAGGACTGCTACAGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
......................................GCTACAGTCGAGTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..............ACTCCTCACACGCGGTCAAGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...CACCA------ACTCCTCACACGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/18/2015 at 12:45 AM