ID:

dwi_1093

 Coordinate:

scf2_1100000004515:3427701-3427851 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.2 -25.2 -24.9

Flybase annnotation

exon [dwil_GLEANR_2397:11]; CDS [Dwil\GK19778-cds]; intron [Dwil\GK19778-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
(CTG)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000004401:59027-59048 -
  2. scf2_1100000004510:1677054-1677075 -
  3. scf2_1100000004510:3150298-3150319 -
  4. scf2_1100000004511:6202445-6202466 -
  5. scf2_1100000004511:7496426-7496447 -
  6. scf2_1100000004511:9311538-9311559 -
  7. scf2_1100000004515:1952977-1952998 -
  8. dwi_1093  scf2_1100000004515:3427759-3427780 -
  9. scf2_1100000004515:4081932-4081953 -
  10. scf2_1100000004577:842985-843006 -
  11. dwi_5349  scf2_1100000004577:2093964-2093985 -
  12. scf2_1100000004585:5338888-5338909 -
  13. scf2_1100000004590:3260513-3260534 -
  14. scf2_1100000004643:59255-59276 -
  15. scf2_1100000004830:306740-306761 -
  16. scf2_1100000004943:12809094-12809115 -
  17. scf2_1100000004902:4050505-4050526 -
  18. scf2_1100000004902:8382116-8382137 -
  19. scf2_1100000004954:4544991-4545012 -
  20. scf2_1100000004963:3702606-3702627 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTATCGACAGGAAGCAGCAGCAACAGCAGCAACAGCAGCAGCATCAACAGTAGTCGAAGCAGTCGGGAGCATGTGGAGGAGCAACAACATCCACAACAACAACAACAACATCCACATCCACAACAACAACAACAACAAGAGCAAAGCATAAGCACTAGCACTGACTCTGATACTGACACTGAGGATGAGGACGGTGATGGTATTGATAAAAGTCCGCTTTTAGGTTTGTACCACAAGCAACAACAACAAC
**************************************************((..((((.....))))..)).((((((............)))))).......((.((...(((.(((((.((...............((((((..((..........))..)).))))...........)).))))).)))...)).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
.................................................AGTAGTCGAAGCAGTCGGGAGCATGT................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0
.......................................................................................................................................................................CTGATACTGACACTGAGGT................................................................. 19 1 2 1.00 2 1 1 0 0
........................................................................................................................................................................TGATACTGACACTGAGGTG................................................................ 19 2 3 0.67 2 2 0 0 0
..........................................................................................................................................................................................................................TTTTAAGTCTGTACCACAAACA........... 22 3 2 0.50 1 0 1 0 0
...........................................................................................................................................................................................GATGACGGTGACGGTATTG............................................. 19 2 3 0.33 1 1 0 0 0
......................................................................................................................................................................ACTGATACTGACACTGAG................................................................... 18 1 3 0.33 1 1 0 0 0
......................................................................................................................................................................ACTGATACTGACACTGAGGT................................................................. 20 2 5 0.20 1 1 0 0 0
.....................................................................................................................................................................GACTGATACTGACACTGAGG.................................................................. 20 2 12 0.17 2 2 0 0 0
......................................................................................................................................................................ACTGATACTGACACTGAGGTG................................................................ 21 3 12 0.17 2 2 0 0 0
........................................................................................................................................................................TAATACTGACACTGAGGC................................................................. 18 2 6 0.17 1 1 0 0 0
........................................................................................................................................................................TGATACTGACACTGAGGTGC............................................................... 20 3 8 0.13 1 1 0 0 0
....................................................................................................................................................................GGACTGATACTGACACTGAGG.................................................................. 21 3 19 0.05 1 1 0 0 0
....................................................................................................................................................................................AGAGGAGGAGGACGGTGAT.................................................... 19 2 19 0.05 1 1 0 0 0
.......................................................................................................................................................................CTCATACTGACGCTGAGGC................................................................. 19 3 20 0.05 1 1 0 0 0
.............................................................................................................................................................................CTGACGCTGAGGGTAAGGA........................................................... 19 3 20 0.05 1 0 1 0 0
...........................................................................................................................................................................................CAGGACGGTGATGGAAGT.............................................. 18 3 20 0.05 1 0 0 0 1
..........................................................................................................................................................................ATACTGACACTGAGGTGC............................................................... 18 3 20 0.05 1 1 0 0 0
..GGACGACAGGAAGCAGCAGCA.................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 1 0
................................................................................................................................................................CCTGACTGTGATAGTGACA........................................................................ 19 3 20 0.05 1 1 0 0 0
.........................................................................................................................CAACAACAACAACAACAAGAGC............................................................................................................ 22 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

TAATAGCTGTCCTTCGTCGTCGTTGTCGTCGTTGTCGTCGTCGTAGTTGTCATCAGCTTCGTCAGCCCTCGTACACCTCCTCGTTGTTGTAGGTGTTGTTGTTGTTGTTGTAGGTGTAGGTGTTGTTGTTGTTGTTGTTCTCGTTTCGTATTCGTGATCGTGACTGAGACTATGACTGTGACTCCTACTCCTGCCACTACCATAACTATTTTCAGGCGAAAATCCAAACATGGTGTTCGTTGTTGTTGTTG
**************************************************((..((((.....))))..)).((((((............)))))).......((.((...(((.(((((.((...............((((((..((..........))..)).))))...........)).))))).)))...)).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V119
head
 M020
head
 V118
embryo
.........TCCTTCGTAGTCGTGGTCGT.............................................................................................................................................................................................................................. 20 2 20 3.45 69 69 0 0 0
.........TCCTTCGTAGTCGTGGTCG............................................................................................................................................................................................................................... 19 2 20 1.90 38 38 0 0 0
..........................................GGAGTTGGCATCAGGTTCGT............................................................................................................................................................................................. 20 3 6 0.83 5 0 5 0 0
........................................TCGTGGTTGTCATCAGAT................................................................................................................................................................................................. 18 2 8 0.25 2 0 0 2 0
......................................CCTCGTGGTTGTCATCAGAT................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0
.........................................................................................................TGTGGCAGGTGTAGGTGT................................................................................................................................ 18 2 20 0.05 1 0 0 0 1
............................................................................CTCCTCGTTGTAGTTGGTGT........................................................................................................................................................... 20 2 20 0.05 1 0 0 0 1
.......................................................................................................................................................................................................CCAAGATTATTTTCAGGCGA................................ 20 3 20 0.05 1 0 0 1 0
...............................................................................................................AGGTCTAGGTATTGTTGATG........................................................................................................................ 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004515:3427651-3427901 - dwi_1093 ATTATC------GACAGGAAGCA------------------------------------GCA---------------GCAAC---------AGCAGCA---------ACAGCAGCAGCATCAACAGTAGTCGAA----------------------------------------------------------------GCA---GT----------------------------CGGGAG---CATGTGGAG---GAGCAACAACATCCACAA------CAACAACAAC------------------AACATC-C---A-------------------------------------------------------------------C---ATCCACAACAA------------CAACAACAACAAGAG------CAAA---------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAGCACTAGCAC------TGACTCTGATACTGACAC---------------------------------------------------TGAGGATGAGGACGG-TGATGGTATTGATA--AAAGTCCGCTTT--------------------------TAGGTTTGTACC---ACAA-G------CAACAACAACAAC
droVir3 scaffold_13042:442099-442361 - GCTGTC------CACGGCCAGCAG------------------------CAGC---------A---------------GCAGC---------AGCAGCAACAGCAGCAG---C---------AACAGCAGCTTAG----------------------------------------------------------------GCA-----GCAAGAG--------------------------T---CAGCAGCAGCAACAACA------------ACAACAACTACAAC---------------------ATTGTG-T---A---CAGCAGACAGCAGCA---------------------------------A----CA---A-----CAACAACAACAACAA---------------CAACAACAACAA------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------CATTTGCACTAGCAC------TCAATCAGACACAGACAC---------------------------------------------------TGAGGATGAGGATGG-TGATGGTATTGATA--AGAGTCCGCTTT--------------------------TAGGTTTGTACC---ATAA-A------CAACAACAACAAC
droMoj3 scaffold_6359:1013089-1013399 + dmo_546 GCTGTC------GACGGCCAGCAGCACGGCA------------------AGC---------A---------------GCAGC---------AACAGCAACAGCA---ACAGC---------AACAGCAGCTTGG-----GCGGCAGCA----G--------------CAATC---------AGGAACAACAACAACA-ACA-----GCAGCAACA------------------ACAACAA---CAGCAGCAACAACAACA------------ACAACAACAACAAC---------------------ATAGTG-T---A---CAGCAGCCAGCAGCA---------------------------------A----CA---A-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCTACAGCT---------ACTACTACAACAACAACAAA------------------------CATTTGCACTAGCAC------TCAATCAGACACAGACAC---------------------------------------------------TGATGATGAGGATGG-TGATGGTATTGATA--AGAGTCCGCTTT--------------------------TAGGTTTGTACC---ATAA-A------CAACAAAAACAAC
droGri2 scaffold_14853:4041208-4041452 + TTTGTC------CACGGCGAGCAG------------------------TAGC---------A---------------GCAGC---------AGTAGCAACAGCA---ACAGC---------AACAGCTCAACCA----------------------------------------------------------------GCAGCAGT----------------------------CAGGAG---CAGCTACAAAAA---CA------------G---CAACAACAAC---------------------AATGTG-T---TCAACAACATGC------------------------AGCA---GCAGCACCAACA-A--------CA------------------------------------------A------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------CATTTGCACTAGCAC------TCAATCAGACACAGACAC---------------------------------------------------TGAGGATGAGGATGG-TGATGGTATTGATA--AGAGTCCGCTTT--------------------------TAGGTTTGTACC---ATAA-A------CAACAACAACAAC
dp5 XR_group6:6664625-6664881 + GACAGA--------------------------------------------GAAGCAGCAGCG---------------ACAAC---------AGCAGCA---------GCAGCAGCAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAATAC---CAGCAGCAACATCAGCA------------ACACTATCAGCAACATTATCA-------------------------A---CAAC-------------------------AGCAGCAGCAGCAG---CAGCA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------CAGCAG---C------A---GCACTTGTACCAGCATCATCCCAGCCTGTCGTCGGTGCTGCCACCCGCTGTCGA------------GACGGTG-GTGG---------------AGTTGCAGTTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--AC-------AGC--------------------------TAGTGCAGCAGC---AACA-G------CAACAGCAGCAGC
droPer2 scaffold_41:27851-28080 + GACAGA--------------------------------------------GAAGCAGCAGCG---------------ACAAC---------AGCAGCA---------GCAGCAGCAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAATAC---CAGCAGCAACATCAGCA------------ACACTATCAGCAACATTATCA-------------------------A---CAAC-------------------------AGCAGCA------------G----CAGCAACA--GC---AACAGCA---A---------------CAGCAGCA-----------------------------------------------------------------------GCAG---C------A---GCACTTGTACCAGCATCATCCCAGCCTGTCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCTGCCAC---------------------------------------------------CCGCTGTCGAGACGG-TGGTGGAG---------------------------------------------------------------TT-G------CAGTTGCAACAAC
droAna3 scaffold_13117:4522522-4522767 - AGTCGC------AGCAGC-------------------------------ATC---AGTAGCA---------------ACAGC---------AGCAGCA---------T---CAGCAGCAGCAACAGCAGCAGCA----------------------------------------------------------------GCG--------------------------------GCGGAAG---CAGAAGCGGTAGCATCA---------A---CGCTACCAACAACAACATCAACAATAACAACAACAACA---------------------------------------------------------------------ACA--AC---AACAACA--------------------------------------------------------------------------------------------ACAACAATAGCAAC------A------GCCGAAATAGCAGC----------------------------------------------------AGCTCGAAAAGCAGCAGCCACCGCAGCAGCCGTCGTCGCAGCCGAAGTCACAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCAGCGTTG-G------CAGCGACGCCAGC
droBip1 scf7180000396383:32379-32627 - AGGAGC------AACAGC-------------------------------AAC------AGCAGCA------------GCAGC---------ATCA------------------------ACATCAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAACAG---CAGCAGCAACAGAAGCAACATCA---T---CGCCAGCAACAACAATATCAGCAGGAGCTGCAGCAGCA---------------------------------------------------------------------ACA--GG---AGCTGCA--------------------------------------------------------------------------------------------ACAGCAACAGCAGG------A------GCTGCAGC----------------------------------------------------AGCGTCAGCAGCAAATGGAACTGTTGAAGCAGCAGCGTCAGCAGCAGGAGATGCTACTGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------CATA--------CAT-C--------------------ACACT---ATCA-G------CAACAGCAACAAC
droKik1 scf7180000302685:196209-196444 + TC-ATC------AACAGC-------------------------------AGCAGCAGCAACA---------------ACAAC---------AGCATCT---------ACAGCAGCAGCAACAACAGCATTTACA-----GCAGCA-------G--------------CA----------------------------------------------------------------ACAACAG---CATTTACAG---CAGCAGCAGCATTTACA---------------------------GCAGCAGCAACA---------------------------------------------------------------------ACA--GC---ATCTACA--------------------------------------------------------------------------------------------GCAGCAGCAACAAC------A------GCATTTACAGCAGC----------------------------------------------AGCAGCAGCAG------CATTTACAGCAGCAGCAGCAACAGCA---TCTACAGCAGCAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCACCA-G------CAGCAACAACAAC
droFic1 scf7180000454065:89535-89791 - ACACTC------AGCAGC-------------------------------AGC---------A---------------ACAAC---------AGCAGCA---------ACAGCAGCAGCAGCAACAGCAGCAGCAGCAAC---------AGCAG--------------CAGCAGCAACAACA-------------------------GCAG---------------------------------------------------------------------CAGCAA---------------------CAACAA----------CAGC----------------------------AGCAGCAGCAG---CAGCA-------A--CAGC---AGCAACAGCAGTTGCAACTGCAG------CAGCAGAAT------GAT--------------------------ATTTTACTGCG--------------------------------------------------------------------------------------------------------CGAGGACATCG-----------------------------------------------------------ATGATATAGATGCCTTTCTCAACA----------------------------------------------------------------------------------------------------------------TGTCT-CC--CCTGCAATCCCT-----------------CGGTTCGCA-GT-------CC---ACAA-TTAATCCCTTCAACGCCAGC
droEle1 scf7180000491023:86060-86318 + AACAAT------AA--GC------------AAGCAGGAGCAGCAG---CAGC---------A---------------ACAGC---------AGCAACAACAGCAACAT---C---------AGCAGCAGCATCA----------------------------------------------------------------GCA-----------GCA------------------GCATCAGCAGCAGCATCAGCAG------CAGCATCAGCAG---CAGCATCAGC---------------------AATATG-T---GCAACTAC----------------------------------------------------------------------AACAG------------CAACAACAGCAACAG------C-----------------------------------------------------AGCAGCAACAG---C------A---ACATTT---GCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CCAGCGGCAACAC---------------------------------------------------CAGCGATTCGGTAGC-TGTTCCCATCG-CA--GCAGCTGACCTC--------------------------CAGTTCGACACC---CTGA-A------TAACAACAATGTA
droRho1 scf7180000777882:8252-8488 - AACATC------AACAGC-------------------------------TAC------AACAGCA------------GCAGC---------AACA---ACAGCAGCAA---C---------AACAACAGCTTCAACAGC---------AGCAA--------------TACCAGCAACAACT-------------------------GCAGCAGCA------------------ACAACAA----------------------------------------------------------------------------------CTGC----------------------------AGCAGCAGCAA---CAACA-------A--CAAC---ATCAACACCAACACTATCTGCAA------CAGCAGCAA------CAA--------------------------ACCCTGCCACCGCCTCCAATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCAGCAATACAA-CACAGCGGCTATAACGCCCACATACC---AACA-A------CTCCAACAGCAAC
droBia1 scf7180000302113:637709-637935 + ATCCTC------CTCAGC-------------------------------AGC---------A---------------ACACC---------AGCAGCA---------GCAGCAGCAACAGCAACAGCAGCAGC---------------A----TGTGGCCCATGGGA------------------AGAAGGCAGCCAGAAA-----ACACCAGCAACACCTACAGCAGCAACAGCAGCAG---CAGCAGCAGCAGCA---------------G------CAGCAGC------------------AACAGCAACA----GCAGCAACA-GC------------------------AGCA---ACAGCAGCAGCA-A--------CA------------------------------------------A------CAG--------------------------AC---------------------------------------------------------------------CAGT----------------------------GCGCCTATGT---------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------CAATAAC---AATA-G------TAGTAGCAACCAC
droTak1 scf7180000415352:1162807-1163065 - CTTGTC------ATCGGCCAGCTG------------------------CAGC---------A---------------GCAGC---------AGT-----------------------------CAGGATGTGC---------------A----TGTGGATCTCAAGG------------------ATCTCCAGGCCAA--------------------------------------------------AGAACAC---CC------------C------AAG--------------------------------------------------------------------------------------------------------------------------------------------CAAGAG------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------AATCTGCAGCGGCACAAAATCCCATTCAGACACCGAAACCGACTCAGAGGATGAGGATGAGGAGGGGCCGGTGACCAAGGATGGGGCTGTTGCCGATGAGGATGGCTGGTGGTATTGATAGAAAAGTCGACTTT--------TTT-C-------------TAGGTTTGTACC--CACAAGA------CAA-CACAACAAC
droEug1 scf7180000409759:960465-960695 - AACAGC------AGCAGC-------------------------------AAC---------A---------------ACAAC---------A------GCAGCA---ACAGC---------AACAGCACTCTCT-----GCAGCAGCA----A--------------CAGTT---------CG-----------------------------------------------------CACT---CAGCAGCAGCAATCTCA---------ATGG--C---CA------------------GCAGCAACAGCA---------------------------------------------------------------------ACA--CC---AGC------------------------------------------TCA---------------------------------------------------CCTTGAACAATCGCACCAAGA------GC---------------------------------------------------------------CAGCAG------------------------------------------------------------------------------------------------------------AATTTCCAGCACACCC---------------------------------------------------TGCGCATGCAGCAGA-TGATGGCACCTTC---AATGCCCAACATCA------------------------GCAACATGTACC---ACCA-C------CAGCAGCAGCAAC
dm3 chr3R:26186483-26186728 + ATCAGC------AGCAG----------------------------------GTGCGGCAGCA---------------GCAAC---------AGCAGCA---------GCAGCAGCAGCAACCACAGCAGCAAC---------------A------------------------------------------------------------------------------------ACAACAG---CAGCAGCAACAGAC---------------A------CAACAAC------------------AACAGTCACA----ACAACAACA-GC------------------------AGCA---GCAGCAGCAGCA-A--------CATC---AGC------------------------------------------CTGTGGTCAGCACTTTTCAGAGGGGCAACTTCCCTCAACAGTCCCATAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGAACATGATGGCCATGGCGGATGTGATGAGCAAGTACC---AGCA-G------CAGCAGCACCAAC
droSim2 3l:2754357-2754604 - AGCAGC------AGCATC-------------------------------ACG------CCCAGCAGCAACATCAGCAGCAGCAGCAGCAACA------GCAGCA---GCAGC---------AGCAG-----------------------------------------CAC-----------TGGGACTACTATGCCAGGCA-----GCAGCAGCA------------------ACATCAACAGCAGCAGCAGCAA---------------------------------------------------CAGCAACAGCCAG---CGGCCGCCACCGGCAACACC------------AACGGCAACAG---CAGCAA-CA---A--------------------------------------CGGCAA-----------------------------------------------------------CAACAACAGCAACGC---C------GACGGCAGCAATACCACG---GTTCCA------------------------------GCGCCTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---AGCA-G------CAGCAACAGCAGC
droSec2 scaffold_2:2891359-2891574 - C--AGC------A----------------------------------------------------------------GCAGCAGCAGCAACA------GCAGCA---GCAGC---------AGCAGCAC----------------------------------------------------TGGGACTACTATGCCAGGCA-----GCAGCAGCA------------------ACATCAACAGCAGCAGCAGCAACAGCA------------ACA---------------------------------------GCCAG---CGGCCGCCACCGGCAACACCAACGGCAACAGCAGCA------------A----CA---A--CGGC---AACAACAGCAA--------------------------------------------------------------------------------------------CGCCGA------------CGGCAGCAATACCACG---GTTCCA------------------------------GCGCCTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---AGCA-G------CAGCAACAGCAGC
droYak3 2L:2082037-2082274 - GCTGCTGATGTCGACGTCG-----------------------CAGCAGCAGCAGCAGCAGTG---------------GCAGC---------AACA---TCAGTG---GCAGC---------AACAGCAACTGCA----------------------------------------------------------------GCA--------G------CAGCA------------ACAGCAG---CAGCAACAACAG---CA------------G------CAGCAACAG------------------CAGCAACA----GCAGCAACA-GC------------------------AGCA---GCAGCAGCAGCA-A--------CAG---------------------------------CAGCA---GCAACAACAA-----------------------------------------------------------------------------------GGGC----------------------------------------------------AGCGGCGACGACGCGCGCAGTTATTATAATAATGGCGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTAGC---ATAATG------CAGCAGCAGCAAC
droEre2 scaffold_4690:5954377-5954597 + GC-AGC------AACAGC-------------------------------AGC------AGCA---------------AC------------A------GCAGCAGCAA---C---------AACAGCAGCTGCAGCAGC---------AGCAA--------------CAACAGCAGCTACA-------------------------GCAGCAGCA------------------ACAACAG---CAG---------------------------------CTGCA---------------GCAGCAGCAACA---------------------------------------------------------------------ACA--GC---AGCTGCA--------------------------------------------------------------------------------------------GCAGCAACAACTGC------A------GCAGCAAC----------------------------------------------------TGCAACAACAGCAGCTGCAACTGCAACAGCAGCTGCAACTGCAACAGCA---GCTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAAC---AGCA-G------CAGCAGCAACAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATTATC------GACAGGAAGCA------------------------------------GCA---------------GCAAC---------AGCAGCA---------ACAGCAGCAGCATCAACAGTAGTCGAA----------------------------------------------------------------GCA---GT----------------------------CGGGAG---CATGTGGAG---GAGCAACAACATCCACAA------CAACAACAAC------------------AACATC-C---A-------------------------------------------------------------------C---ATCCACAACAA------------CAACAACAACAAGAG------CAAA---------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAGCACTAGCAC------TGACTCTGATACTGACAC---------------------------------------------------TGAGGATGAGGACGG-TGATGGTATTGATA--AAAGTCCGCTTT--------------------------TAGGTTTGTACC---ACAA-G------CAACAACAACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................AGTAGTCGAA----------------------------------------------------------------GCA---GT----------------------------CGGGAG---CATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATACTGACAC---------------------------------------------------TGAGGT........................................................................................................1921.00201010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATACTGACAC---------------------------------------------------TGAGGTG.......................................................................................................1930.67202000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATACTGACAC---------------------------------------------------TGAGGTGC......................................................................................................2080.13101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGACAC---------------------------------------------------TGAGGTGC......................................................................................................18200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAACAA------------CAACAACAACAAGAG------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
droVir3
GCTGTC------CACGGCCAGCAG------------------------CAGC---------A---------------GCAGC---------AGCAGCAACAGCAGCAG---C---------AACAGCAGCTTAG----------------------------------------------------------------GCA-----GCAAGAG--------------------------T---CAGCAGCAGCAACAACA------------ACAACAACTACAAC---------------------ATTGTG-T---A---CAGCAGACAGCAGCA---------------------------------A----CA---A-----CAACAACAACAACAA---------------CAACAACAACAA------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------CATTTGCACTAGCAC------TCAATCAGACACAGACAC---------------------------------------------------TGAGGATGAGGATGG-TGATGGTATTGATA--AGAGTCCGCTTT--------------------------TAGGTTTGTACC---ATAA-A------CAACAACAACAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACAGACAC---------------------------------------------------TGAGGATGAGGAT.................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAC---------------------------------------------------TGAGGATGAGGATGG-T.............................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
....................GCAG------------------------CAGC---------A---------------GCAGC---------AGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.357000000000000000000000000000070000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CAGACAGCAGCA---------------------------------A----CA---A-----CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141000000000000000000000000000000000000000100000000000000000000000
................................................................................................CAACAGCAGCAG---C---------AACAGCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.071000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AACAA---------------CAACAACAACAA------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------CA......................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................AGC---------AGCAGCAACAGCAGCAG---C---------AACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
...................................................C---------A---------------GCAGC---------AGCAGCAACAGCAGCAG---C---------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................AGCAGCAACAGCAGCAG---C---------AACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAGCAGCAACAACA------------ACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGCAGCA---------------------------------A----CA---A-----CAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AGCA---------------------------------A----CA---A-----CAACAACAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................CAACAGCAGCAG---C---------AACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...............GGCCAGCAG------------------------CAGC---------A---------------GCAGC---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GCAGCAGCAACAACA------------ACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAGCAGCAACAACA------------ACAACAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---------------CAACAACAACAA------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------C.......................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCTGTC------GACGGCCAGCAGCACGGCA------------------AGC---------A---------------GCAGC---------AACAGCAACAGCA---ACAGC---------AACAGCAGCTTGG-----GCGGCAGCA----G--------------CAATC---------AGGAACAACAACAACA-ACA-----GCAGCAACA------------------ACAACAA---CAGCAGCAACAACAACA------------ACAACAACAACAAC---------------------ATAGTG-T---A---CAGCAGCCAGCAGCA---------------------------------A----CA---A-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCTACAGCT---------ACTACTACAACAACAACAAA------------------------CATTTGCACTAGCAC------TCAATCAGACACAGACAC---------------------------------------------------TGATGATGAGGATGG-TGATGGTATTGATA--AGAGTCCGCTTT--------------------------TAGGTTTGTACC---ATAA-A------CAACAAAAACAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGTATTGATA--AGAGTCCGCTTT--------------------------........................................2611.001000001
.........................................................................................................................AACAGCAGCTTGG-----GCGGCAGCA----G--------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...................AGCAGCACGGCA------------------AGC---------A---------------GCAGC---------AAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTATTGATA--AGAGTCCGCT....................................................................2311.001000001
...................................................................................................CAGCA---ACAGC---------AACAGCAGCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.252200000
.................................................................................................AACAGCA---ACAGC---------AACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153201000
..........................................................................................................................................................................................................................................................AACAACAACA------------ACAACAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
...................................................................................................CAGCA---ACAGC---------AACAGCAGCTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102001010
..............................................................................................................................................................................................AACAACA-ACA-----GCAGCAACA------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
.................................................................................................................................................................................................................GCAACA------------------ACAACAA---CAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
.............................................................................GCAGC---------AACAGCAACAGCA---AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000020
.......................................................................................................................................................................................GAACAACAACAACA-ACA-----GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................AGCA---ACAGC---------AACAGCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
.................................................................................................AACAGCA---ACAGC---------AACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.............................................................................................................................................................................................CAACAACA-ACA-----GCAGCAACA------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
...............................................................................................................................................................................................................................................A---CAGCAGCAACAACAACA------------ACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
................................................................................................................................................................................................................AGCAACA------------------ACAACAA---CAGCAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000010
...............................................................................................................................................................................................................................................A---CAGCAGCAACAACAACA------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
..................................................................................................ACAGCA---ACAGC---------AACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
..................................................................................................................................................................................................ACA-ACA-----GCAGCAACA------------------ACAACAA---CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.....................................................................................................................................................................................................................CA------------------ACAACAA---CAGCAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
......................................................................................................................................................................................................................A------------------ACAACAA---CAGCAGCAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.............................................................A---------------GCAGC---------AACAGCAACAGCA---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
......................................................................................................................................................................................................................A------------------ACAACAA---CAGCAGCAACAACAACA------------ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
............................................................................................................................................................................................................................................ACAA---CAGCAGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
TTTGTC------CACGGCGAGCAG------------------------TAGC---------A---------------GCAGC---------AGTAGCAACAGCA---ACAGC---------AACAGCTCAACCA----------------------------------------------------------------GCAGCAGT----------------------------CAGGAG---CAGCTACAAAAA---CA------------G---CAACAACAAC---------------------AATGTG-T---TCAACAACATGC------------------------AGCA---GCAGCACCAACA-A--------CA------------------------------------------A------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------CATTTGCACTAGCAC------TCAATCAGACACAGACAC---------------------------------------------------TGAGGATGAGGATGG-TGATGGTATTGATA--AGAGTCCGCTTT--------------------------TAGGTTTGTACC---ATAA-A------CAACAACAACAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GACAGA--------------------------------------------GAAGCAGCAGCG---------------ACAAC---------AGCAGCA---------GCAGCAGCAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAATAC---CAGCAGCAACATCAGCA------------ACACTATCAGCAACATTATCA-------------------------A---CAAC-------------------------AGCAGCAGCAGCAG---CAGCA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------CAGCAG---C------A---GCACTTGTACCAGCATCATCCCAGCCTGTCGTCGGTGCTGCCACCCGCTGTCGA------------GACGGTG-GTGG---------------AGTTGCAGTTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--AC-------AGC--------------------------TAGTGCAGCAGC---AACA-G------CAACAGCAGCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CAGCA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------CAGCA......................................................................................................................................................................................................................................................................................................................................................................................23200.1530200100000
....................................................................................................................GCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
.................................................................................................A---------GCAGCAGCAGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..................................................................................................................................................................................................................................................................................................................................................................................GCA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------CAGCAG---C------A---G......................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..................................................................................................................CAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
.............................................................G---------------ACAAC---------AGCAGCA---------GCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.0910100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AACA-G------CAACAGCAGCA..21200.0510010000000
.....................................................................................................................................................................................................................................................................................................................................C-------------------------AGCAGCAGCAGCAG---CAGCA-------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
...................................................................................................................................................................................................................................................................................................CA-------------------------A---CAAC-------------------------AGCAGCAGCAGCAG---CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAG---CAGCA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
.............................................................................................................AGCAGCAGCAACAACAGCAGCAGC---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.................................................................................................A---------GCAGCAGCAGCAACAACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000100
...............................................................................AAC---------AGCAGCA---------GCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................................AAC-------------------------AGCAGCAGCAGCAG---CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...............................................................................................GCA---------GCAGCAGCAGCAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................GCAGCAGCAGCAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
...................................................................................................................................................................................................................................................................................................................................................................................CA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------CAGCAG---C------A---GC.....................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
...........................................................................................................GCAGCAGCAGCAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
............................................................................................GCAGCA---------GCAGCAGCAGCAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................GCAGCAG---CAGCA-------A--CAG---------------------------------CAG-----------------------------------------------------------------------CA.........................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000001
............................................................................................GCAGCA---------GCAGCAGCAGCAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510010000000
...................................................................................................................................................................................................................................................................................................CA-------------------------A---CAAC-------------------------AGCAGCAGCAGCAG---CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
................................................................................................CA---------GCAGCAGCAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510001000000
...............................................................................................................CAGCAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000001000
droPer2
GACAGA--------------------------------------------GAAGCAGCAGCG---------------ACAAC---------AGCAGCA---------GCAGCAGCAGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAATAC---CAGCAGCAACATCAGCA------------ACACTATCAGCAACATTATCA-------------------------A---CAAC-------------------------AGCAGCA------------G----CAGCAACA--GC---AACAGCA---A---------------CAGCAGCA-----------------------------------------------------------------------GCAG---C------A---GCACTTGTACCAGCATCATCCCAGCCTGTCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCTGCCAC---------------------------------------------------CCGCTGTCGAGACGG-TGGTGGAG---------------------------------------------------------------TT-G------CAGTTGCAACAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................AGCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.....................................................................................................................CAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCA---A---------------CAGCAGCA-----------------------------------------------------------------------GCAG---C------A---.......................................................................................................................................................................................................................................................................................................................................................................19200.051001000
....................................................................................................................GCAACAACAGCAGCAGC---------------A------------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
..............................................................................CAAC---------AGCAGCA---------GCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................CA-------------------------A---CAAC-------------------------AGCAGCA------------G----CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
..................................................................................................................................................................................................................................................................................................................................CAAC-------------------------AGCAGCA------------G----CAGCAACA--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................CA-------------------------A---CAAC-------------------------AGCAGCA------------G----CAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droAna3
AGTCGC------AGCAGC-------------------------------ATC---AGTAGCA---------------ACAGC---------AGCAGCA---------T---CAGCAGCAGCAACAGCAGCAGCA----------------------------------------------------------------GCG--------------------------------GCGGAAG---CAGAAGCGGTAGCATCA---------A---CGCTACCAACAACAACATCAACAATAACAACAACAACA---------------------------------------------------------------------ACA--AC---AACAACA--------------------------------------------------------------------------------------------ACAACAATAGCAAC------A------GCCGAAATAGCAGC----------------------------------------------------AGCTCGAAAAGCAGCAGCCACCGCAGCAGCCGTCGTCGCAGCCGAAGTCACAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCAGCGTTG-G------CAGCGACGCCAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................AGTAGCA---------------ACAGC---------AGCAGCA---------T---CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................GCA---------------ACAGC---------AGCAGCA---------T---CAGCAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.501010000
............................................................CA---------------ACAGC---------AGCAGCA---------T---CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.222000002
............................................................................................GCAGCA---------T---CAGCAGCAGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.152200000
..............................................................................................................................................................................................................................................................................................................ACAACAACA---------------------------------------------------------------------ACA--AC---AACAACA--------------------------------------------------------------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
............................................................CA---------------ACAGC---------AGCAGCA---------T---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000011
.............................................................................ACAGC---------AGCAGCA---------T---CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000001
.................................................................................................A---------T---CAGCAGCAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081010000
..............................................................................................................................................................................................................................................................................................................................................................................................A--AC---AACAACA--------------------------------------------------------------------------------------------ACAACAATAGCA...................................................................................................................................................................................................................................................................................................................................................................................22140.071100000
..........................................................AGCA---------------ACAGC---------AGCAGCA---------T---CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061000001
.....................................................................................................................................................................................................................................................................................................................CA---------------------------------------------------------------------ACA--AC---AACAACA--------------------------------------------------------------------------------------------ACAACAATA......................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.................................................................................................................GCAGCAGCAACAGCAGCAGCA----------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.........................................................................................................................................................................................................................................................................................................TAACAACAACAACA---------------------------------------------------------------------ACA--AC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...........................................................GCA---------------ACAGC---------AGCAGCA---------T---CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
.......................................................................................................................................................................................................................................................................................................AATAACAACAACAACA---------------------------------------------------------------------ACA--AC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droBip1
AGGAGC------AACAGC-------------------------------AAC------AGCAGCA------------GCAGC---------ATCA------------------------ACATCAGCAGCAGC---------------A------------------------------------------------------------------------------------GCAACAG---CAGCAGCAACAGAAGCAACATCA---T---CGCCAGCAACAACAATATCAGCAGGAGCTGCAGCAGCA---------------------------------------------------------------------ACA--GG---AGCTGCA--------------------------------------------------------------------------------------------ACAGCAACAGCAGG------A------GCTGCAGC----------------------------------------------------AGCGTCAGCAGCAAATGGAACTGTTGAAGCAGCAGCGTCAGCAGCAGGAGATGCTACTGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------CATA--------CAT-C--------------------ACACT---ATCA-G------CAACAGCAACAACSizeHit CountTotal NormTotal
No Reads
droKik1
TC-ATC------AACAGC-------------------------------AGCAGCAGCAACA---------------ACAAC---------AGCATCT---------ACAGCAGCAGCAACAACAGCATTTACA-----GCAGCA-------G--------------CA----------------------------------------------------------------ACAACAG---CATTTACAG---CAGCAGCAGCATTTACA---------------------------GCAGCAGCAACA---------------------------------------------------------------------ACA--GC---ATCTACA--------------------------------------------------------------------------------------------GCAGCAGCAACAAC------A------GCATTTACAGCAGC----------------------------------------------AGCAGCAGCAG------CATTTACAGCAGCAGCAGCAACAGCA---TCTACAGCAGCAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCACCA-G------CAGCAACAACAACSizeHit CountTotal NormTotal
No Reads
droFic1
ACACTC------AGCAGC-------------------------------AGC---------A---------------ACAAC---------AGCAGCA---------ACAGCAGCAGCAGCAACAGCAGCAGCAGCAAC---------AGCAG--------------CAGCAGCAACAACA-------------------------GCAG---------------------------------------------------------------------CAGCAA---------------------CAACAA----------CAGC----------------------------AGCAGCAGCAG---CAGCA-------A--CAGC---AGCAACAGCAGTTGCAACTGCAG------CAGCAGAAT------GAT--------------------------ATTTTACTGCG--------------------------------------------------------------------------------------------------------CGAGGACATCG-----------------------------------------------------------ATGATATAGATGCCTTTCTCAACA----------------------------------------------------------------------------------------------------------------TGTCT-CC--CCTGCAATCCCT-----------------CGGTTCGCA-GT-------CC---ACAA-TTAATCCCTTCAACGCCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
AACAAT------AA--GC------------AAGCAGGAGCAGCAG---CAGC---------A---------------ACAGC---------AGCAACAACAGCAACAT---C---------AGCAGCAGCATCA----------------------------------------------------------------GCA-----------GCA------------------GCATCAGCAGCAGCATCAGCAG------CAGCATCAGCAG---CAGCATCAGC---------------------AATATG-T---GCAACTAC----------------------------------------------------------------------AACAG------------CAACAACAGCAACAG------C-----------------------------------------------------AGCAGCAACAG---C------A---ACATTT---GCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CCAGCGGCAACAC---------------------------------------------------CAGCGATTCGGTAGC-TGTTCCCATCG-CA--GCAGCTGACCTC--------------------------CAGTTCGACACC---CTGA-A------TAACAACAATGTASizeHit CountTotal NormTotal
No Reads
droRho1
AACATC------AACAGC-------------------------------TAC------AACAGCA------------GCAGC---------AACA---ACAGCAGCAA---C---------AACAACAGCTTCAACAGC---------AGCAA--------------TACCAGCAACAACT-------------------------GCAGCAGCA------------------ACAACAA----------------------------------------------------------------------------------CTGC----------------------------AGCAGCAGCAA---CAACA-------A--CAAC---ATCAACACCAACACTATCTGCAA------CAGCAGCAA------CAA--------------------------ACCCTGCCACCGCCTCCAATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCAGCAATACAA-CACAGCGGCTATAACGCCCACATACC---AACA-A------CTCCAACAGCAACSizeHit CountTotal NormTotal
No Reads
droBia1
ATCCTC------CTCAGC-------------------------------AGC---------A---------------ACACC---------AGCAGCA---------GCAGCAGCAACAGCAACAGCAGCAGC---------------A----TGTGGCCCATGGGA------------------AGAAGGCAGCCAGAAA-----ACACCAGCAACACCTACAGCAGCAACAGCAGCAG---CAGCAGCAGCAGCA---------------G------CAGCAGC------------------AACAGCAACA----GCAGCAACA-GC------------------------AGCA---ACAGCAGCAGCA-A--------CA------------------------------------------A------CAG--------------------------AC---------------------------------------------------------------------CAGT----------------------------GCGCCTATGT---------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------CAATAAC---AATA-G------TAGTAGCAACCACSizeHit CountTotal NormTotal
No Reads
droTak1
CTTGTC------ATCGGCCAGCTG------------------------CAGC---------A---------------GCAGC---------AGT-----------------------------CAGGATGTGC---------------A----TGTGGATCTCAAGG------------------ATCTCCAGGCCAA--------------------------------------------------AGAACAC---CC------------C------AAG--------------------------------------------------------------------------------------------------------------------------------------------CAAGAG------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------AATCTGCAGCGGCACAAAATCCCATTCAGACACCGAAACCGACTCAGAGGATGAGGATGAGGAGGGGCCGGTGACCAAGGATGGGGCTGTTGCCGATGAGGATGGCTGGTGGTATTGATAGAAAAGTCGACTTT--------TTT-C-------------TAGGTTTGTACC--CACAAGA------CAA-CACAACAACSizeHit CountTotal NormTotal
No Reads
droEug1
AACAGC------AGCAGC-------------------------------AAC---------A---------------ACAAC---------A------GCAGCA---ACAGC---------AACAGCACTCTCT-----GCAGCAGCA----A--------------CAGTT---------CG-----------------------------------------------------CACT---CAGCAGCAGCAATCTCA---------ATGG--C---CA------------------GCAGCAACAGCA---------------------------------------------------------------------ACA--CC---AGC------------------------------------------TCA---------------------------------------------------CCTTGAACAATCGCACCAAGA------GC---------------------------------------------------------------CAGCAG------------------------------------------------------------------------------------------------------------AATTTCCAGCACACCC---------------------------------------------------TGCGCATGCAGCAGA-TGATGGCACCTTC---AATGCCCAACATCA------------------------GCAACATGTACC---ACCA-C------CAGCAGCAGCAACSizeHit CountTotal NormTotal
No Reads
dm3
ATCAGC------AGCAG----------------------------------GTGCGGCAGCA---------------GCAAC---------AGCAGCA---------GCAGCAGCAGCAACCACAGCAGCAAC---------------A------------------------------------------------------------------------------------ACAACAG---CAGCAGCAACAGAC---------------A------CAACAAC------------------AACAGTCACA----ACAACAACA-GC------------------------AGCA---GCAGCAGCAGCA-A--------CATC---AGC------------------------------------------CTGTGGTCAGCACTTTTCAGAGGGGCAACTTCCCTCAACAGTCCCATAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGAACATGATGGCCATGGCGGATGTGATGAGCAAGTACC---AGCA-G------CAGCAGCACCAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
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ML-DmD21		V028
CME-W1-Cl.8+		V029
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S3		V075
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ML-DmBG3-C2		V077
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S2-R+		V095
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CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
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Head		V138
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Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGGCCATGGCGGATGT..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCCATGGCGGATGTGAA.......................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAGCAACAGAC---------------A------CAACAAC------------------AACAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATGATGGCCATGGCGGA.............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAAGTACC---AGCA-G------CAGCAG.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................CAGCAGCAACAGAC---------------A------CAACAAC------------------AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................AAC---------AGCAGCA---------GCAGCAGCAGCAACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCACTTTTCAGAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCATGGCGGATGTGATGAGCAAG................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CATC---AGC------------------------------------------CTGTGGTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGATGAGCAAGTACC---AGC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGAACATGATGGC......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................A-A--------CATC---AGC------------------------------------------CTGTGGTCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CA---------------GCAAC---------AGCAGCA---------GCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000400000000000000000000000000000000000000000000000000000400
......................................................................................................................AACCACAGCAGCAAC---------------A------------------------------------------------------------------------------------ACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................CAGCAGCAGCAACCACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TC---AGC------------------------------------------CTGTGGTCAGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAACCACAGCAGCAAC---------------A------------------------------------------------------------------------------------ACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GCAACAGAC---------------A------CAACAAC------------------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CA----ACAACAACA-GC------------------------AGCA---GCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000080000000000000000000000001000
...AGC------AGCAG----------------------------------GTGCGGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GCAGCAAC---------------A------------------------------------------------------------------------------------ACAACAG---CAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................A---------------GCAAC---------AGCAGCA---------GCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CACA----ACAACAACA-GC------------------------AGCA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AACAACA-GC------------------------AGCA---GCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000001010
...........................................................GCA---------------GCAAC---------AGCAGCA---------GCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
........................................................................................................................................................................................................................................................................................................................................GC------------------------AGCA---GCAGCAGCAGCA-A--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CAGCAAC---------------A------------------------------------------------------------------------------------ACAACAG---CAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2550000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................................................................................................................AGCAGCAAC---------------A------------------------------------------------------------------------------------ACAACAG---CAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CGGCAGCA---------------GCAAC---------AGCAGCA---------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AACAACA-GC------------------------AGCA---GCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
droSim2
AGCAGC------AGCATC-------------------------------ACG------CCCAGCAGCAACATCAGCAGCAGCAGCAGCAACA------GCAGCA---GCAGC---------AGCAG-----------------------------------------CAC-----------TGGGACTACTATGCCAGGCA-----GCAGCAGCA------------------ACATCAACAGCAGCAGCAGCAA---------------------------------------------------CAGCAACAGCCAG---CGGCCGCCACCGGCAACACC------------AACGGCAACAG---CAGCAA-CA---A--------------------------------------CGGCAA-----------------------------------------------------------CAACAACAGCAACGC---C------GACGGCAGCAATACCACG---GTTCCA------------------------------GCGCCTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---AGCA-G------CAGCAACAGCAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................TCAGCAGCAGCAGCAGCAACA------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23101.1011000001100000000000
............................................................................................................................................................................................................................................................................................................................................................................G---CAGCAA-CA---A--------------------------------------CGGCAA-----------------------------------------------------------CAACA...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................................CA---GCAGC---------AGCAG-----------------------------------------CAC-----------TGGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................AGCAGCAACA------GCAGCA---GCAGC---------AGCAG-----------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000000100000
......................................................................................................................................................................................................................................................CAGCAGCAA---------------------------------------------------CAGCAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000000000
droSec2
C--AGC------A----------------------------------------------------------------GCAGCAGCAGCAACA------GCAGCA---GCAGC---------AGCAGCAC----------------------------------------------------TGGGACTACTATGCCAGGCA-----GCAGCAGCA------------------ACATCAACAGCAGCAGCAGCAACAGCA------------ACA---------------------------------------GCCAG---CGGCCGCCACCGGCAACACCAACGGCAACAGCAGCA------------A----CA---A--CGGC---AACAACAGCAA--------------------------------------------------------------------------------------------CGCCGA------------CGGCAGCAATACCACG---GTTCCA------------------------------GCGCCTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---AGCA-G------CAGCAACAGCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................AGC---------AGCAGCAC----------------------------------------------------TGGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACG---GTTCCA------------------------------GCGCCTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---AGC......................2511.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---AGCA-G------CAGCAACA.....1911.0010010
................................................................................................................................................................................................................................................................................................................................................AACACCAACGGCAACAGCAGCA------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................CGGC---AACAACAGCAA--------------------------------------------------------------------------------------------CGCC.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................CAACGGCAACAGCAGCA------------A----CA---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410010
..........................................................................................................................................................................................................................................CATCAACAGCAGCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.1310010
...................................................................................................................................................................................................................AGCA------------------ACATCAACAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.1310010
......................................................................................................................................................................................................................A------------------ACATCAACAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910010
...................................................................................................................................................................................................................AGCA------------------ACATCAACAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810010
............................................................................................................................................................................................................................................TCAACAGCAGCAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710010
............................................................................................................................................................................................................................................TCAACAGCAGCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610010
..........................................................................................................................................................................................................................................CATCAACAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
GCTGCTGATGTCGACGTCG-----------------------CAGCAGCAGCAGCAGCAGTG---------------GCAGC---------AACA---TCAGTG---GCAGC---------AACAGCAACTGCA----------------------------------------------------------------GCA--------G------CAGCA------------ACAGCAG---CAGCAACAACAG---CA------------G------CAGCAACAG------------------CAGCAACA----GCAGCAACA-GC------------------------AGCA---GCAGCAGCAGCA-A--------CAG---------------------------------CAGCA---GCAACAACAA-----------------------------------------------------------------------------------GGGC----------------------------------------------------AGCGGCGACGACGCGCGCAGTTATTATAATAATGGCGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTAGC---ATAATG------CAGCAGCAGCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................CA---GCAGCAGCAGCA-A--------CAG---------------------------------CAGCA---GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.30600000000006
...............................................................................................................................................................................................................................................G---CAGCAACAACAG---CA------------G------CAGCAACAG------------------CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29180.06100100000000
...............................................................................................................................................................................................................................................G---CAGCAACAACAG---CA------------G------CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
............................................................................................................................................................................................................................A------------ACAGCAG---CAGCAACAACAG---CA------------G------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
....................................................................................................................................................................................................................................................AGCAACAACAG---CA------------G------CAGCAACAG------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
..............................................................................................................................................................................................................................................AG---CAGCAACAACAG---CA------------G------CAGCAACAG------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
.................................................................................................................................................................................................................................................................................................................................................................................AGCA-A--------CAG---------------------------------CAGCA---GCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
............................................................................................................................................................................................................................A------------ACAGCAG---CAGCAACAACAG---CA------------G------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.........................................................................................................................................................................................................................AGCA------------ACAGCAG---CAGCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
GC-AGC------AACAGC-------------------------------AGC------AGCA---------------AC------------A------GCAGCAGCAA---C---------AACAGCAGCTGCAGCAGC---------AGCAA--------------CAACAGCAGCTACA-------------------------GCAGCAGCA------------------ACAACAG---CAG---------------------------------CTGCA---------------GCAGCAGCAACA---------------------------------------------------------------------ACA--GC---AGCTGCA--------------------------------------------------------------------------------------------GCAGCAACAACTGC------A------GCAGCAAC----------------------------------------------------TGCAACAACAGCAGCTGCAACTGCAACAGCAGCTGCAACTGCAACAGCA---GCTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAAC---AGCA-G------CAGCAGCAACAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................AGCAA--------------CAACAGCAGCTACA-------------------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAACAGCAGCTGCA.....................................................................................................................................................................................................................................................................................1920.5011000000
..........................................................................................................................................C---------AGCAA--------------CAACAGCAGCTACA-------------------------GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000010
...........................................................................................A------GCAGCAGCAA---C---------AACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000030
.........................................................................................................CAA---C---------AACAGCAGCTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000100
.....................................................................................................................................................................................................................CA------------------ACAACAG---CAG---------------------------------CTGCA---------------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000100
..................................................................................................................................................................................................................................................................................................................CAACA---------------------------------------------------------------------ACA--GC---AGCTGCA--------------------------------------------------------------------------------------------GCA............................................................................................................................................................................................................................................................................................................................................................................................2070.1410000100
.............................................................A---------------AC------------A------GCAGCAGCAA---C---------AACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000200
......................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------ACA--GC---AGCTGCA--------------------------------------------------------------------------------------------GCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................19130.0810001000
.........................................................................................................................AACAGCAGCTGCAGCAGC---------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810001000
...........................................................................................................................................................................................................................................AACAG---CAG---------------------------------CTGCA---------------GCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810001000
GC-AGC------AACAGC-------------------------------AGC------AGCA---------------AC------------A------GCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510100000
...................................................................................................................................GCAGCAGC---------AGCAA--------------CAACAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100
.....C------AACAGC-------------------------------AGC------AGCA---------------AC------------A------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
..........................................................AGCA---------------AC------------A------GCAGCAGCAA---C---------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
.............................................................A---------------AC------------A------GCAGCAGCAA---C---------AACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
.........................................................................................................................................................................................................................................................................................GCA---------------GCAGCAGCAACA---------------------------------------------------------------------ACA--GC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100

Generated: 05/18/2015 at 12:39 AM