ID:

dwi_1052

 Coordinate:

scf2_1100000004515:1309029-1309121 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.67 -0.4 0.0

Flybase annnotation

CDS [Dwil\GK20002-cds]; exon [dwil_GLEANR_2601:1]; CDS [Dwil\GK20002-cds]; exon [dwil_GLEANR_2601:2]; intron [Dwil\GK20002-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. scf2_1100000004511:711896-711917 +
  2. scf2_1100000004511:8403038-8403059 +
  3. scf2_1100000004513:2683477-2683498 +
  4. scf2_1100000004515:450047-450068 +
  5. scf2_1100000004515:3115576-3115597 +
  6. scf2_1100000004515:3839829-3839850 +
  7. scf2_1100000004516:923032-923053 +
  8. scf2_1100000004521:4037999-4038020 +
  9. scf2_1100000004540:1333954-1333975 +
  10. scf2_1100000004585:5469517-5469538 +
  11. scf2_1100000004729:467131-467152 +
  12. scf2_1100000004768:1471811-1471832 +
  13. scf2_1100000004822:2426537-2426558 +
  14. scf2_1100000004943:5350229-5350250 +
  15. scf2_1100000004943:9280157-9280178 +
  16. scf2_1100000004902:9223803-9223824 +
  17. scf2_1100000004909:5953916-5953937 +
  18. scf2_1100000004909:6865550-6865571 +
  19. scf2_1100000004909:9553054-9553075 +
  20. scf2_1100000004909:11856326-11856347 +
  21. scf2_1100000004401:446559-446580 +
  22. scf2_1100000004511:1179807-1179828 +
  23. scf2_1100000004511:4073937-4073958 +
  24. scf2_1100000004511:11396729-11396750 +
  25. dwi_1052  scf2_1100000004515:1309061-1309082 +
  26. scf2_1100000004516:3529118-3529139 +
  27. scf2_1100000004516:3636206-3636227 +
  28. scf2_1100000004729:1110354-1110375 +
  29. scf2_1100000004762:47093-47114 +
  30. scf2_1100000004837:225239-225260 +
  31. scf2_1100000004943:13575791-13575812 +
  32. scf2_1100000004943:14244614-14244635 +
  33. scf2_1100000004902:1360228-1360249 +
  34. scf2_1100000004902:9092654-9092675 +
  35. scf2_1100000004909:9003299-9003320 +
  36. scf2_1100000004909:11564792-11564813 +
  37. scf2_1100000004909:11774839-11774860 +
star
  1. scf2_1100000002399:904-923 +
  2. scf2_1100000002399:1018-1037 +
  3. scf2_1100000004511:4810596-4810615 +
  4. scf2_1100000004513:2916535-2916554 +
  5. dwi_1052  scf2_1100000004515:1309036-1309055 +
  6. scf2_1100000004521:11140974-11140993 +
  7. scf2_1100000004521:11457499-11457518 +
  8. scf2_1100000004540:285645-285664 +
  9. scf2_1100000004590:1028422-1028441 +
  10. scf2_1100000004590:2896839-2896858 +
  11. scf2_1100000004615:202-221 +
  12. scf2_1100000004729:2159087-2159106 +
  13. scf2_1100000004729:2460366-2460385 +
  14. scf2_1100000004762:6091732-6091751 +
  15. scf2_1100000004943:4527273-4527292 +
  16. scf2_1100000004902:723381-723400 +
  17. scf2_1100000004902:5909289-5909308 +
  18. scf2_1100000004909:9899502-9899521 +
  19. scf2_1100000004961:137733-137752 +
  20. scf2_1100000004963:3073806-3073825 +

Sense Strand Reads

---------------###################################---------------------------------------------------------------------------------------------##################################################
AGAAAATTCATACAAATGGGTGTCATATACAAGATACTAAAACAGCAACGGCAGCAGCAGCAGCAGCAACAACAACTACAACAACAACAACAACAACAGCAGCAACATCAACTACAGCAAGAGCAAATATTTCGCAAAAATTTAAATATGGATATAAATTTAAGTTCGAGTACAAAATGCAAAGTTCAAGCAG
*********************************************************.....((.((...............................)).)).***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 M045
female body
 V118
embryo
 V117
male body
..................................................................................AACAACAACAACAACAGCAGCA......................................................................................... 22 0 20 0.20 4 0 0 4 0
............................................................................TACAACAACAACAACAACAACAGCAGCA......................................................................................... 28 0 10 0.10 1 1 0 0 0
...........................................................................................AACAACAGCAGCAACATCAAC................................................................................. 21 0 12 0.08 1 1 0 0 0
......................................AAAACAGGAACGGCGGCA......................................................................................................................................... 18 2 15 0.07 1 0 1 0 0
.........................................................................AACTACAACAACAACAACA..................................................................................................... 19 0 20 0.05 1 0 1 0 0
..........................................................................................CAACAACAGCAGCAACATCA................................................................................... 20 0 20 0.05 1 1 0 0 0
.........................................................CAGCAGCAGCAACAACAACT.................................................................................................................... 20 0 20 0.05 1 0 0 0 1
...............................................................................AACAACAACAACAACAACAGC............................................................................................. 21 0 20 0.05 1 0 1 0 0
.................................................................GCAACAACAACTACGACAACAACAA....................................................................................................... 25 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

TCTTTTAAGTATGTTTACCCACAGTATATGTTCTATGATTTTGTCGTTGCCGTCGTCGTCGTCGTCGTTGTTGTTGATGTTGTTGTTGTTGTTGTTGTCGTCGTTGTAGTTGATGTCGTTCTCGTTTATAAAGCGTTTTTAAATTTATACCTATATTTAAATTCAAGCTCATGTTTTACGTTTCAAGTTCGTC
*****************************************************************************************.....((.((...............................)).)).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
.................................................CCGTCGTCGTCGTCGTCG.............................................................................................................................. 18 0 20 0.10 2 2 0
............................................................................ATGTTGTTGTTGTTGTTGT.................................................................................................. 19 0 20 0.05 1 1 0
..............................................................CGTCGTTGTTGTTGATGT................................................................................................................. 18 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004515:1308979-1309171 + dwi_1052 AGAAAAT-TCATAC------AAAT---GGG----TGTCAT-------A--------TAC-------------------------AAGATACTAA------AAC---------AG----------CAACGGCAGCAGCAGCAGCAGCAACA---------------AC------AACTACAACAACAACAACA---ACAAC---AGCAGCAACATCAACTA------------------------------CAGC-----------------------------------------A------------------------------------AGAGCAAATATTTCG--------------------------------------CAAAAA---TTTA--AATA--TGGATAT--AAATTTA-----------------AGTTCGAGTACAAA-------------ATGC----------------------------------------AAAGTTCAAGCAG
droVir3 scaffold_12875:1439956-1440149 + ATACAAATTGT----------T---------------------ACAAGTGGTG-------------TC----------ATCA-------------AAAGCAAC---------AG----------CAACATCAGCAACAACAGCAACAACAACAAC---------------------TACAACAACAACAGCA---ACATC---AT---AATCAACAACAA------------------------------CAACAA-----CAACA------ACAA------CAA---------CAA-------------------------------AA-----GCA---ACATCA--------------------------------------TTATTA----------TTA--TGAT----------------------------------------------------------TAAAAGTTGACCCAATTGCGAGTGCAACAGTTCTC--------GAG--TGCAAAC
droMoj3 scaffold_6680:10813998-10814205 - AAAGGCT-TTATCC-------------------------------AAGTGCCATC-AAC-------------------------TTGTAGCTACAA---C------------AT----------CAGCGGCAGCAGCAGCAGCCGCGGCA---------------AC------AACTACAACAACAACAACA------AC------------AG-----ACAA------------C-AAC-----GA----------------------------A------CAC---------T------TTGCTTCAGTTGGAGCTTGAAAAAGATACTCGGCACAGATAATTTG--------------------------------------CCAGCAGTG--CC-AAA--TGTAATCCGCCATATAAC------------------------------C--GTCTAACG----------------------------------------------GTAAGTCAAAGCAA
droGri2 scaffold_14853:2110278-2110470 + AAGACAT-TTTCGC------AAAT---GTC----TTTCGTTTAGCAAGA------A--AA------AC----------AACA-------------GCAACAGCAGCAATAGCAACAGCAGCAAT----------------------------AGC------AACAAC------A---------GCAACAGCA------AC---AA------CAGCAACAA------------------------------CAGCAA-C-AGCAACAATAGCAACAACAGCAACAA---------T------------------------------------------------------------G----------------------------------------TA--AGTA--ACAATTG--------------------------------------------------GA----------------A-TT---GGTACAACAACAAACTGGCAACCAACTGCAAGTTG
dp5 3:5632142-5632307 - ACAAGTG-CTGATAAAATGCAAAT---G------------------------------CAAATGAAGCAACG-------CCA-------------GCAGAAGCAGC------AG----------CAGC------AACAGCAGC---------AGCAGC---AACAACAGC------------------------AACAGC---AACAACAGCAACAGCAA------------------------------CAGCAG-CA----GCA------ACAG------CAG---------CAAGTTTTTGC---------------------T--G--------------TCA--------------------------------------GCAGCA---TTAA--AGTA--AAAA-------------------------------------------------------------------------------------------------------GTGAAAAC-A
droPer2 scaffold_1109:10540-10712 - TACAAAT-GGA----------T---------------------ACCATT-------AAA-------------------------AGGTGGCGCCGACAAC------------CG----------CAATGACAGCAGCAGCAGCAACACCAACA---------------------GCTACAACAACAACAACA------AC---AA------GAGCAACAA----------------GAGCAACAC-----AAGC-----AACTGCAACTTTAGCAA------CAA---------T------G----------------------------------------------------------------------------------------------TC-AGA--CACACACAG--ATATGAG------------------------------C-------------AT---------------------------------------CCAGAGATACAGATAC
droAna3 scaffold_13335:1520772-1520962 + TTGGTGC---A----------TGT---ATGTGTG------------------------------AGCT----------AC-A-------ACAACAACAACAAC---------AA-------------CAAAAGCAGCAGCAGCAGAAGCAACA---------------------TCCAACACAACAATAACA------GT---TA------ACAGCGCAT----------------CAACAACAG-----CAAC-----AACTACAACTGCAGCAACAACAACAA---------T--------------------------------------------------------------------------------------------------------------------------------------------------AAAATTAAAGC-----------ACC-A------------CAACA---ACTACAACAATAAAAAA--AAAAAAATAAAATAAA
droBip1 scf7180000396568:867330-867496 + AAAAAAT-TACAAC------AAAA---CTGTA---------------A--------CAA-----AAAC----------T----------ACAACAA---CAGCAACAAC---AA-------------------AAACTACAGCAACAACA---------------AA------AACTACAACAACAACAAAA------AC------------TAGTACAA---------------C-AAC-----AAAAACTAC-----AACAACAACAAAAACTACAACAACAA---------C--------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTACAAC-------------AAC------------A----------------------------AAAACTACAACAA
droKik1 scf7180000302586:21826-22008 + GGTGTCT---G----------TAA---ATGTGTG------------------------------AGCT----------AC-T----------AC------AACAACAACAACAG-------------------CAGCAGCAGCAGCAACAACAGT---------A---------GTT--AACAACATCAA--GCAGCAGC---AGCAGCAGCTGCAGCAA------------------------------CAACAA--------CA------ACAA------CAA------CAGT------TCTT---------------------AGCAGCAAC--------------------A----------------------------------------TA--AAAGCA--AATTA--------------------------------AAATAGCAGCAATAAAAAGCC--------------------------------------------AAAGCACCAACAA
droFic1 scf7180000453906:152334-152511 - AAAATCC---A----------CAC---CAGGAAGTGCTAT-------A--------CAC-------------------------AGGCAATGCCAAC---------------AG----------CAACATCAGCAACAGCAACACCAACAACAGCAACACCAACAAC------A------------GCAACA---CCAAC---AACAGCAACAGCAACAGCAACAAGAACAAGAA-GAGCAACAA-----AAAC-----AACGGCA------AC---------------------------------------------------------------------------------ATGAGTCGAAATTGTAGTTGTAC----------------------------------------------------------------------------------------------------------------------------------------------AAA
droEle1 scf7180000491338:1436444-1436620 + AGATCAT-TCA----------GAATCA--T-----------TGTCAAGT------G--CA----A--------------TCT-------------GCAGCAGCAACAACAGCAACAGCAGCAAT----------------------------AGC------AGCAAC------A------------------ACAGCAGC---AGCAACAGGATCAGGAA------------------------------CAGCAG--------CA------ACAT------CAT------CTGT----------------------------------TGTAC------------ACCAGCAATC----------------------------------------AC--CAAGTC--TTTTA--------------------------------CAGTGAAAACATTAGTCGGA----------------AACA----------------------------GCAACAGCAG
droRho1 scf7180000768607:8683-8882 - AAAATCC---A----------CAC---CAGGAAGTGCTAT-------A--------CAC-------------------------AGGCAATGCCAAC---------------AG----------CAACATCAGCAGCAGCAGCAGCAACA---------------GC------AACAGCAACAA------------AAACAACAA------CAAGAACAA------------------------------CGG-----------CA------ACAT------GAG---------CCG-------A---------------------AATTGTAG--------------------------------------TTGTACAAACACGTCAGCT---TTTAA-ATTA--CTTG------------GCCTAAAGGTA--AATTGAGCGGAAGTTAAA-------------ATGT------------------------------------------TGGAAAAACAG
droBia1 scf7180000302113:637645-637815 + AAGATAA-TCATAC------AAAACCA--GATGAT------ACTCAA-----------------------TGCCAGTCACCA-------------GCAGCAGCAGCAGC---AG----------C---------AACATCCTC---------CTCAGC---AGCAACACC------------------------AGCAGC---AGCAGCAGCAACAGCAA------------------------------CAGCAG--------CA------GCAT------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCCATGGGAAGAAGGCAGCCAGAAAACACCAG------------CAACA----------------------------CCTACAGCAG
droTak1 scf7180000415367:11578-11739 + AAGATAA-TCATAC------AAAACCA--GATGAT------ACTCAA-----------------------TGCCAGCCATCA-------------GCAGCAGC---------AG----------C---------AACATCCTC---------AGCAGC---AGCAACACC------------------------AGCAGC---AGCAGCAACAACAGCAG------------------------------CAG-----------CA------ACAT------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCCATGGGAAGAAGGCAGCCAGAAAACACCAG------------CAACA----------------------------TCTACAGCAG
droEug1 scf7180000409533:336298-336469 + AGAAAAA-TAAAAA------T------------------------AAATAACGG----CAAAGATAACAAAGCAAATTGCAA----GCTGCAGG----ACATC---------AG-------------------CAACAACAACAGCAACA------------ATAACAACAACA------------------GCAACAAC---AA------CAACAGCAA------------------------------CAA-----------CA------AC-------------------------------------------------------------------------------------------------------------------------------------AAA--------------------GCA-AAACCAAGTAAAAAACAAA-------------ATAAATAATTCGCCCAATACC---------------------------AACAACCAG
dm3 chr3L:17593408-17593596 + AAATTCA---T----------T---------------------ACAAGT------G--AA------AG----------TCCA-------------AAAACAACAGCAACACCAACAGCACCATT----------------------------TGC------AACAAC------A------------------ACAACAAC---AGCAACTGCAACTGCAA------------------------------CTGCAGATT----GCA------ACAA------CAA---------T------CTGC---------------------ATTCACGGCGCAAAAAGTTCG--------------------------------------TTAACA---TTGA--ACTA--CGAA--------------------GCA--AACGAGGCGGAATACGAA-------------GAGA----------------------------------------AAAATGCGCATAG
droSim2 3l:17183737-17183915 + AAATTCA---T----------T---------------------ACAAGT------G--AA------AG----------TCCA-------------AAAACAACAGCAACACCAACAGCAGCATT----------------------------TGC------AACAAC------A------------------ACAAAAACTACAA------CAACTGCAA------------------------------CTGCA-----------------ACAA------CAA---------T------CTGC---------------------ATTCACGGCGCAAAAAGTTCG--------------------------------------TTAACA---TTGA--ACTA--CGAA--------------------GCA--AACGAGGCGGAATACGAA-------------GAGA----------------------------------------AAAATGCGCATAG
droSec2 scaffold_0:9639753-9639931 + AAATTCA---T----------T---------------------ACAAGT------G--AA------AG----------TCCA-------------AAAACAACAGCAACACCAACAGCAGCATT----------------------------TGC------AACAAC------A------------------ACAACAACAACAA------CAACAGCAA------------------------------CTGCA-----------------ACAA------CAA---------T------CTGC---------------------ATTCACGGCGCAAAAAGTTCG--------------------------------------TTAACA---TTGA--ACTA--CGAA--------------------GCA--AACGAGGCGGAATACGAA-------------GAGA----------------------------------------AAAATGCGCATAG
droYak3 v2_chrUn_434:933-1116 - GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACAGCAGTAGCAAC---AGC---------AGCAAC------------------------AACAGC---AGCAACAGCAGTAGCAA------------------------------CAGCAG-CA----GCA------ACAA------CAACGACATCAGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTTTATCC---------------------AAA--CACACATAT--ATATATA-----------------A-------------------------------------------------------------------ATACATATAAAATACA
droEre2 scaffold_4845:590128-590304 + GGAAATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACAACAGCAACAGCAGTA---------GCAACAGC---A---------------------GCAAC---AACAACAGCAGCAGCAA------------------------------CAACGA--------CG------ACAT------CAG---------CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTTTATAC---------------------AAA--CACACATAT--ATAACAA------------------------------A-------------AA---------------------------------------AAAAATATACAGTCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGAAAAT-TCATAC------AAAT---GGG----TGTCAT-------A--------TAC-------------------------AAGATACTAA------AAC---------AG----------CAACGGCAGCAGCAGCAGCAGCAACA---------------AC------AACTACAACAACAACAACA---ACAAC---AGCAGCAACATCAACTA------------------------------CAGC-----------------------------------------A------------------------------------AGAGCAAATATTTCG--------------------------------------CAAAAA---TTTA--AATA--TGGATAT--AAATTTA-----------------AGTTCGAGTACAAA-------------ATGC----------------------------------------AAAGTTCAAGCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................AACAACAACA---ACAAC---AGCAGCA.........................................................................................................................................................................................................................................................................................................................22200.20400040
................................................................................................................................................................................TACAACAACAACAACA---ACAAC---AGCAGCA.........................................................................................................................................................................................................................................................................................................................28100.10100001
...............................................................................................................................................................................................A---ACAAC---AGCAGCAACATCAAC.................................................................................................................................................................................................................................................................................................................21120.08100001
.............................................................................................................................................................................AACTACAACAACAACAACA---........................................................................................................................................................................................................................................................................................................................................19200.05101000
..............................................................................................................................................................................................CA---ACAAC---AGCAGCAACATCA...................................................................................................................................................................................................................................................................................................................20200.05100001
........................................................................................................................................CAGCAGCAGCAACA---------------AC------AACT..........................................................................................................................................................................................................................................................................................................................................................20200.05100100
...................................................................................................................................................................................AACAACAACAACA---ACAAC---AGC.............................................................................................................................................................................................................................................................................................................................21200.05101000
droVir3
ATACAAATTGT----------T---------------------ACAAGTGGTG-------------TC----------ATCA-------------AAAGCAAC---------AG----------CAACATCAGCAACAACAGCAACAACAACAAC---------------------TACAACAACAACAGCA---ACATC---AT---AATCAACAACAA------------------------------CAACAA-----CAACA------ACAA------CAA---------CAA-------------------------------AA-----GCA---ACATCA--------------------------------------TTATTA----------TTA--TGAT----------------------------------------------------------TAAAAGTTGACCCAATTGCGAGTGCAACAGTTCTC--------GAG--TGCAAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................AATCAACAACAA------------------------------CAACAA-----CA....................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
................................................................................................................AG----------CAACATCAGCAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................21110.091001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATCAACAACAA------------------------------CAACAA-----CAACA------ACAA------CAA---------C....................................................................................................................................................................................................................................30200.051000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................AACAACAACAGCA---ACATC---A...............................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAACAA------------------------------CAACAA-----CAACA------ACA........................................................................................................................................................................................................................................................20200.051000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................ACAACAACAACAGCA---ACATC---................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CAGCAACAACAGCAACAACAAC...................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................ACAA-----CAACA------ACAA------CAA---------CAA-------------------------------AA-----GCA---......................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AA-----CAACA------ACAA------CAA---------CAA-------------------------------AA-----............................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................CAACAACAACAAC---------------------TACAACAAC..................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000010000000000000000000000000000000000000000000
droMoj3
AAAGGCT-TTATCC-------------------------------AAGTGCCATC-AAC-------------------------TTGTAGCTACAA---C------------AT----------CAGCGGCAGCAGCAGCAGCCGCGGCA---------------AC------AACTACAACAACAACAACA------AC------------AG-----ACAA------------C-AAC-----GA----------------------------A------CAC---------T------TTGCTTCAGTTGGAGCTTGAAAAAGATACTCGGCACAGATAATTTG--------------------------------------CCAGCAGTG--CC-AAA--TGTAATCCGCCATATAAC------------------------------C--GTCTAACG----------------------------------------------GTAAGTCAAAGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAGACAT-TTTCGC------AAAT---GTC----TTTCGTTTAGCAAGA------A--AA------AC----------AACA-------------GCAACAGCAGCAATAGCAACAGCAGCAAT----------------------------AGC------AACAAC------A---------GCAACAGCA------AC---AA------CAGCAACAA------------------------------CAGCAA-C-AGCAACAATAGCAACAACAGCAACAA---------T------------------------------------------------------------G----------------------------------------TA--AGTA--ACAATTG--------------------------------------------------GA----------------A-TT---GGTACAACAACAAACTGGCAACCAACTGCAAGTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................AACAGCAGCAAT----------------------------AGC------AACA......................................................................................................................................................................................................................................................................................................................................................................19120.08110
.................................................................................................AACAGCAGCAATAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................19120.08110
.................................................................................A-------------GCAACAGCAGCAATAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................19190.05110
.............................................................................................................AGCAACAGCAGCAAT----------------------------AGC------A.........................................................................................................................................................................................................................................................................................................................................................................19190.05110
..................................................................................................................................................................ACAAC------A---------GCAACAGCA------AC---AA------CAGC....................................................................................................................................................................................................................................................................................................................23200.05110
............................................................................................................................................................................................................A------CAGCAACAA------------------------------CAGCAA-C-AGCA....................................................................................................................................................................................................................................................................21200.05110
dp5
ACAAGTG-CTGATAAAATGCAAAT---G------------------------------CAAATGAAGCAACG-------CCA-------------GCAGAAGCAGC------AG----------CAGC------AACAGCAGC---------AGCAGC---AACAACAGC------------------------AACAGC---AACAACAGCAACAGCAA------------------------------CAGCAG-CA----GCA------ACAG------CAG---------CAAGTTTTTGC---------------------T--G--------------TCA--------------------------------------GCAGCA---TTAA--AGTA--AAAA-------------------------------------------------------------------------------------------------------GTGAAAAC-ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................GCAGC------AG----------CAGC------AACAGCAGC---------A..................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
..................................................................................................................................................................................................................GCAACAGCAA------------------------------CAGCAG-CA----GC..................................................................................................................................................................................................................................................................20200.1020200000000
.......................................................................................................................................................................AGC------------------------AACAGC---AACAACAGCA......................................................................................................................................................................................................................................................................................................................19200.0510000100000
............................................................................................................................CAGC------AACAGCAGC---------AGCAGC---AA........................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
..................................................................................................................................................................................................................GCAACAGCAA------------------------------CAGCAG-CA----GCA------AC.........................................................................................................................................................................................................................................................23200.0510100000000
................................................................................................................................................................................................................CAGCAACAGCAA------------------------------CAGCAG-CA----GCA------A..........................................................................................................................................................................................................................................................24200.0510100000000
...............................................................................................................................................................................................................ACAGCAACAGCAA------------------------------CAGCAG-C.........................................................................................................................................................................................................................................................................20200.0510000010000
....................................................................................................AGCAGC------AG----------CAGC------AACAGCAGC---------...................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
..........................................................................................................................................GCAGC---------AGCAGC---AACAACAGC------------------------AACAGC---A...............................................................................................................................................................................................................................................................................................................................27200.0510100000000
........................................................................................................................................................AGCAGC---AACAACAGC------------------------AACA.....................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
TACAAAT-GGA----------T---------------------ACCATT-------AAA-------------------------AGGTGGCGCCGACAAC------------CG----------CAATGACAGCAGCAGCAGCAACACCAACA---------------------GCTACAACAACAACAACA------AC---AA------GAGCAACAA----------------GAGCAACAC-----AAGC-----AACTGCAACTTTAGCAA------CAA---------T------G----------------------------------------------------------------------------------------------TC-AGA--CACACACAG--ATATGAG------------------------------C-------------AT---------------------------------------CCAGAGATACAGATACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................AA------CAA---------T------G----------------------------------------------------------------------------------------------TC-AGA--CACACACAG--............................................................................................................2111.001100000
droAna3
TTGGTGC---A----------TGT---ATGTGTG------------------------------AGCT----------AC-A-------ACAACAACAACAAC---------AA-------------CAAAAGCAGCAGCAGCAGAAGCAACA---------------------TCCAACACAACAATAACA------GT---TA------ACAGCGCAT----------------CAACAACAG-----CAAC-----AACTACAACTGCAGCAACAACAACAA---------T--------------------------------------------------------------------------------------------------------------------------------------------------AAAATTAAAGC-----------ACC-A------------CAACA---ACTACAACAATAAAAAA--AAAAAAATAAAATAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................ACAA---------T--------------------------------------------------------------------------------------------------------------------------------------------------AAAATTAAAGC-----------ACC-A------------CAACA---AC.................................2711.001010000
...................................................................................................................................AGCAGCAGCAGCAGAAGCAACA---------------------TCC..........................................................................................................................................................................................................................................................................................................................................................2511.001000001
......................................................................................................C---------AA-------------CAAAAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................1930.331010000
droBip1
AAAAAAT-TACAAC------AAAA---CTGTA---------------A--------CAA-----AAAC----------T----------ACAACAA---CAGCAACAAC---AA-------------------AAACTACAGCAACAACA---------------AA------AACTACAACAACAACAAAA------AC------------TAGTACAA---------------C-AAC-----AAAAACTAC-----AACAACAACAAAAACTACAACAACAA---------C--------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTACAAC-------------AAC------------A----------------------------AAAACTACAACAASizeHit CountTotal NormTotal
No Reads
droKik1
GGTGTCT---G----------TAA---ATGTGTG------------------------------AGCT----------AC-T----------AC------AACAACAACAACAG-------------------CAGCAGCAGCAGCAACAACAGT---------A---------GTT--AACAACATCAA--GCAGCAGC---AGCAGCAGCTGCAGCAA------------------------------CAACAA--------CA------ACAA------CAA------CAGT------TCTT---------------------AGCAGCAAC--------------------A----------------------------------------TA--AAAGCA--AATTA--------------------------------AAATAGCAGCAATAAAAAGCC--------------------------------------------AAAGCACCAACAASizeHit CountTotal NormTotal
No Reads
droFic1
AAAATCC---A----------CAC---CAGGAAGTGCTAT-------A--------CAC-------------------------AGGCAATGCCAAC---------------AG----------CAACATCAGCAACAGCAACACCAACAACAGCAACACCAACAAC------A------------GCAACA---CCAAC---AACAGCAACAGCAACAGCAACAAGAACAAGAA-GAGCAACAA-----AAAC-----AACGGCA------AC---------------------------------------------------------------------------------ATGAGTCGAAATTGTAGTTGTAC----------------------------------------------------------------------------------------------------------------------------------------------AAASizeHit CountTotal NormTotal
No Reads
droEle1
AGATCAT-TCA----------GAATCA--T-----------TGTCAAGT------G--CA----A--------------TCT-------------GCAGCAGCAACAACAGCAACAGCAGCAAT----------------------------AGC------AGCAAC------A------------------ACAGCAGC---AGCAACAGGATCAGGAA------------------------------CAGCAG--------CA------ACAT------CAT------CTGT----------------------------------TGTAC------------ACCAGCAATC----------------------------------------AC--CAAGTC--TTTTA--------------------------------CAGTGAAAACATTAGTCGGA----------------AACA----------------------------GCAACAGCAGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAATCC---A----------CAC---CAGGAAGTGCTAT-------A--------CAC-------------------------AGGCAATGCCAAC---------------AG----------CAACATCAGCAGCAGCAGCAGCAACA---------------GC------AACAGCAACAA------------AAACAACAA------CAAGAACAA------------------------------CGG-----------CA------ACAT------GAG---------CCG-------A---------------------AATTGTAG--------------------------------------TTGTACAAACACGTCAGCT---TTTAA-ATTA--CTTG------------GCCTAAAGGTA--AATTGAGCGGAAGTTAAA-------------ATGT------------------------------------------TGGAAAAACAGSizeHit CountTotal NormTotal
No Reads
droBia1
AAGATAA-TCATAC------AAAACCA--GATGAT------ACTCAA-----------------------TGCCAGTCACCA-------------GCAGCAGCAGCAGC---AG----------C---------AACATCCTC---------CTCAGC---AGCAACACC------------------------AGCAGC---AGCAGCAGCAACAGCAA------------------------------CAGCAG--------CA------GCAT------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCCATGGGAAGAAGGCAGCCAGAAAACACCAG------------CAACA----------------------------CCTACAGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAGATAA-TCATAC------AAAACCA--GATGAT------ACTCAA-----------------------TGCCAGCCATCA-------------GCAGCAGC---------AG----------C---------AACATCCTC---------AGCAGC---AGCAACACC------------------------AGCAGC---AGCAGCAACAACAGCAG------------------------------CAG-----------CA------ACAT------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCCATGGGAAGAAGGCAGCCAGAAAACACCAG------------CAACA----------------------------TCTACAGCAGSizeHit CountTotal NormTotal
No Reads
droEug1
AGAAAAA-TAAAAA------T------------------------AAATAACGG----CAAAGATAACAAAGCAAATTGCAA----GCTGCAGG----ACATC---------AG-------------------CAACAACAACAGCAACA------------ATAACAACAACA------------------GCAACAAC---AA------CAACAGCAA------------------------------CAA-----------CA------AC-------------------------------------------------------------------------------------------------------------------------------------AAA--------------------GCA-AAACCAAGTAAAAAACAAA-------------ATAAATAATTCGCCCAATACC---------------------------AACAACCAGSizeHit CountTotal NormTotal
No Reads
dm3
AAATTCA---T----------T---------------------ACAAGT------G--AA------AG----------TCCA-------------AAAACAACAGCAACACCAACAGCACCATT----------------------------TGC------AACAAC------A------------------ACAACAAC---AGCAACTGCAACTGCAA------------------------------CTGCAGATT----GCA------ACAA------CAA---------T------CTGC---------------------ATTCACGGCGCAAAAAGTTCG--------------------------------------TTAACA---TTGA--ACTA--CGAA--------------------GCA--AACGAGGCGGAATACGAA-------------GAGA----------------------------------------AAAATGCGCATAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................TT----------------------------TGC------AACAAC------A------------------ACAACAAC---C...............................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................AACAGCAACACCAACAGCAC...................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................ACAAC---AGCAACTGCAACTGCA................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................ACAGCAACACCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AACAAC------A------------------ACAACAAC---AGC.............................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GC------AACAAC------A------------------ACAACAAC---AGCA............................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAATTCA---T----------T---------------------ACAAGT------G--AA------AG----------TCCA-------------AAAACAACAGCAACACCAACAGCAGCATT----------------------------TGC------AACAAC------A------------------ACAAAAACTACAA------CAACTGCAA------------------------------CTGCA-----------------ACAA------CAA---------T------CTGC---------------------ATTCACGGCGCAAAAAGTTCG--------------------------------------TTAACA---TTGA--ACTA--CGAA--------------------GCA--AACGAGGCGGAATACGAA-------------GAGA----------------------------------------AAAATGCGCATAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................T----------------------------TGC------AACAAC------A------------------ACAAAA.....................................................................................................................................................................................................................................................................................................................................17100.10100000000010000000
........................................................................................................................................................TGC------AACAAC------A------------------ACAAAG.....................................................................................................................................................................................................................................................................................................................................16200.05100000001000000000
droSec2
AAATTCA---T----------T---------------------ACAAGT------G--AA------AG----------TCCA-------------AAAACAACAGCAACACCAACAGCAGCATT----------------------------TGC------AACAAC------A------------------ACAACAACAACAA------CAACAGCAA------------------------------CTGCA-----------------ACAA------CAA---------T------CTGC---------------------ATTCACGGCGCAAAAAGTTCG--------------------------------------TTAACA---TTGA--ACTA--CGAA--------------------GCA--AACGAGGCGGAATACGAA-------------GAGA----------------------------------------AAAATGCGCATAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACAGCAGTAGCAAC---AGC---------AGCAAC------------------------AACAGC---AGCAACAGCAGTAGCAA------------------------------CAGCAG-CA----GCA------ACAA------CAACGACATCAGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTTTATCC---------------------AAA--CACACATAT--ATATATA-----------------A-------------------------------------------------------------------ATACATATAAAATACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................AGA------AGC---------AG----------C---------AACAGCAGTAGCAAC---AGC---------.......................................................................................................................................................................................................................................................................................................................................................................27130.69900000000009
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.58704000000003
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.50606000000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------T.........................................................................................................................................................25140.43602400000000
......................................................................................................................................................................................................................................................................................................CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGT.......................................................................................................................................................25140.29400300010000
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.25302100000000
......................................................................................................................................................................................................................................................................................................CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTT......................................................................................................................................................26140.21301200000000
....................................................................................................................................................................AGCAAC------------------------AACAGC---AGCAACAGCAGTAGC.................................................................................................................................................................................................................................................................................................................2760.17100100000000
....GTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.17201100000000
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.17201100000000
................................................................................................................AG----------C---------AACAGCAGTAGCAAC---AGC---------AGCAAC------------------------.........................................................................................................................................................................................................................................................................................................................................27120.17201100000000
.....................................................................................................................................................................GCAAC------------------------AACAGC---AGCAACAGCAGTAGC.................................................................................................................................................................................................................................................................................................................2660.17101000000000
....................................................................................................AGC---------AG----------C---------AACAGCAGTAGCAAC---AGC---------AGC....................................................................................................................................................................................................................................................................................................................................................................27190.16302100000000
.....................................................................................................................................................................................................AGC---AGCAACAGCAGTAGCAA------------------------------CAGCAG-C.........................................................................................................................................................................................................................................................................27190.16302100000000
.............................................................................................................................................................................................................CAACAGCAGTAGCAA------------------------------CAGCAG-CA----G...................................................................................................................................................................................................................................................................2470.14101000000000
........................................................................................................................................................................................................................................................................................................................................AGTCAAAACAAGAATTTTC----------------------TGTTT.....................................................................................................................................................24140.14200200000000
....................................................................................................................................................................AGCAAC------------------------AACAGC---AGCAACAGCAGT....................................................................................................................................................................................................................................................................................................................2470.14100000010000
..............................................................................................................................................TAGCAAC---AGC---------AGCAAC------------------------AACAGC---AGC.............................................................................................................................................................................................................................................................................................................................2580.13100100000000
.......................................................................................................................................................................................................................AGCAA------------------------------CAGCAG-CA----GCA------ACAA------CAACGAC..........................................................................................................................................................................................................................................2780.13101000000000
..................................................................................................................................................................................................................................................................................AA------CAACGACATCAGCTA-------------------------------AGTCAAAACAA........................................................................................................................................................................................2890.11100100000000
.................................................................................................................................................................................................................................................................CA----GCA------ACAA------CAACGACATC.......................................................................................................................................................................................................................................19100.10100100000000
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08101000000000
.GAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08101000000000
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08101000000000
.....TC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08100010000000
GGAAGTC---A----------AAT---TCAAAGG------------------------------AGCC----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.08100100000000
............................................................................................................................C---------AACAGCAGTAGCAAC---AGC---------AGCAAC------------------------A........................................................................................................................................................................................................................................................................................................................................26120.08101000000000
.............................................................................................................................................GTAGCAAC---AGC---------AGCAAC------------------------AAC......................................................................................................................................................................................................................................................................................................................................20120.08100000010000
......................................................................................................................................AACAGCAGTAGCAAC---AGC---------AGCAAC------------------------.........................................................................................................................................................................................................................................................................................................................................24130.08100100000000
................................GG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------.....................................................................................................................................................................................................................................................................................................................................................................................................27130.08100100000000
..........................................................................................................................................................................................................................................................CAGCAG-CA----GCA------ACAA------CAACGA...........................................................................................................................................................................................................................................21130.08100100000000
..............................AAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................25130.08101000000000
............................................................................................GA------AGC---------AG----------C---------AACAGCAGTAGCAAC---AGC---------.......................................................................................................................................................................................................................................................................................................................................................................26130.08100100000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------..........................................................................................................................................................24140.07101000000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------G.........................................................................................................................................................25140.07100100000000
........................................................................................................................................................................................................................................................................................................................................AGTCAAAACAAGAATTTTC----------------------TGTTC.....................................................................................................................................................24140.07100100000000
........................................................................................AGCAGA------AGC---------AG----------C---------AACAGCAGTAGCA........................................................................................................................................................................................................................................................................................................................................................................................25140.07100010000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TG........................................................................................................................................................26140.07101000000000
......................................................................................................................................................................................................................................................................................................CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TG........................................................................................................................................................24140.07101000000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGT.......................................................................................................................................................27140.07100100000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTT......................................................................................................................................................28140.07100100000000
........................................................................................................................................................................................................................................................................................................................................AGTCAAAACAAGAATTTTC----------------------TGTT......................................................................................................................................................23140.07101000000000
.....................................................................................................................................................................................................................................................................................................GCTA-------------------------------AGTCAAAACAAGAATTT..................................................................................................................................................................................21150.07100100000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTTT.................................................................................................................................................................................23150.07100100000000
.................................................................................TACCAGCAGCAGA------AGC---------AG----------C---------AAC..................................................................................................................................................................................................................................................................................................................................................................................................22150.07100100000000
....................................................................................................................................................................................................................................................................................................AGCTA-------------------------------AGTCAAAACAAGAATTT..................................................................................................................................................................................22150.07100100000000
.................................................................................................................................................................................................................AGCAGTAGCAA------------------------------CAGCAG-CA----GC..................................................................................................................................................................................................................................................................21160.06101000000000
..............................................................................TC-TACCAGCAGCAGA------AGC---------AG----------C---------.....................................................................................................................................................................................................................................................................................................................................................................................................21170.06100100000000
....................................................................................................................................................................................................................AGTAGCAA------------------------------CAGCAG-CA----GCA------...........................................................................................................................................................................................................................................................19200.05100001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATAT--ATATATA-----------------A-------------------------------------------------------------------ATACATAT........20200.05101000000000
..................................................................................................................................................................................................................GCAGTAGCAA------------------------------CAGCAG-CA----G...................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
GGAAATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACAACAGCAACAGCAGTA---------GCAACAGC---A---------------------GCAAC---AACAACAGCAGCAGCAA------------------------------CAACGA--------CG------ACAT------CAG---------CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTTTATAC---------------------AAA--CACACATAT--ATAACAA------------------------------A-------------AA---------------------------------------AAAAATATACAGTCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....ATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2461.0066000000
....ATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.5033000000
...........................................................................................................................................................................................................................................................AACGA--------CG------ACAT------CAG---------CTA-------------------------------AGTCAAAT...........................................................................................................................................................................................2560.5030000003
....ATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.3322000000
........................................................................................................................................................................................................................................................................................................................................AGTCAAAACAAGAATTTTC----------------------TGTTT.....................................................................................................................................................2460.3322000000
....ATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.3322000000
.......................................................................................................................................................TA---------GCAACAGC---A---------------------GCAAC---AACAACAGCA......................................................................................................................................................................................................................................................................................................................2640.2511000000
.....................................................................................................................................................................................................AAC---AACAACAGCAGCAGCAA------------------------------CAACGA--------CG------...........................................................................................................................................................................................................................................................2840.2511000000
...................................................................................................................................................GCAGTA---------GCAACAGC---A---------------------GCAAC---AACAAC..........................................................................................................................................................................................................................................................................................................................2640.2511000000
...........................TCAAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------A......................................................................................................................................................................................................................................................................................................................................................................................................................................2750.2011000000
..............................................................................................................................................................................................................AACAGCAGCAGCAA------------------------------CAACGA--------CG------ACA........................................................................................................................................................................................................................................................2550.2011000000
..............................AAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2011000000
.......................T---TCAAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------...........................................................................................................................................................................................................................................................................................................................................................................................................................3050.2010000001
..............................................................................TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACAA................................................................................................................................................................................................................................................................................................................................................................................................2650.2011000000
..............................AAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------A..........................................................................................................................................................................................................................................................................................................................................................................................................................2750.2011000000
.......................................................................................................................................................TA---------GCAACAGC---A---------------------GCAAC---AACAAC..........................................................................................................................................................................................................................................................................................................................2250.2011000000
.............................AAAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------...........................................................................................................................................................................................................................................................................................................................................................................................................................2750.2011000000
...................................................................C----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACAACA..............................................................................................................................................................................................................................................................................................................................................................................................2950.2011000000
.................................................................................TACCAGCAGCAGA------AGC---------AG----------C---------AACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................2850.2011000000
.....................................................................................................................................................................................................AAC---AACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................18200.2040000040
..............................AAGG------------------------------AGCC----------TC-TACCAGCAGCAGA------AGC---------AG----------C---------.....................................................................................................................................................................................................................................................................................................................................................................................................2950.2010100000
..............................................................................TC-TACCAGCAGCAGA------AGC---------AG----------C---------AACA.................................................................................................................................................................................................................................................................................................................................................................................................2550.2010100000
.......................T---TCAAAGG------------------------------AGCC----------TC-TACCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.1711000000
.......................................................................................................................................................................................................................AGCAA------------------------------CAACGA--------CG------ACAT------CAG---------CTA-------------------------------AG.................................................................................................................................................................................................2560.1711000000
.....TC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1711000000
...........................................................................................................................................................................................................................................................................................AG---------CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------..........................................................................................................................................................2460.1711000000
.......................................................................................................................................................................................................................................................................................................TA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTTTA....................................................................................................................................................2760.1711000000
......................AT---TCAAAGG------------------------------AGCC----------TC-TACCAGCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.1711000000
...............................................................................................................................................................................................................ACAGCAGCAGCAA------------------------------CAACGA--------CG------ACAT------C................................................................................................................................................................................................................................................2660.1711000000
........................................................................................................................................................................................................................................................................................................A-------------------------------AGTCAAAACAAGAATTTTC----------------------..........................................................................................................................................................2060.1711000000
......................................................................................................................................................................................................................................................................................................CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGT.......................................................................................................................................................2560.1711000000
.....TC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.1711000000
......................AT---TCAAAGG------------------------------AGCC----------TC-TACCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.1711000000
.......................................................................................................................................................................................................................................................................................................TA-------------------------------AGTCAAAACAAGAATTT..................................................................................................................................................................................1960.1711000000
...................................................................................................................................................................................................................................................................................T------CAG---------CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------..........................................................................................................................................................2660.1711000000
........................................................................................................................................................................................................................................................................................................................................AGTCAAAACAAGAATTTTC----------------------TGC.......................................................................................................................................................2260.1710100000
.....TC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.1711000000
........................................................................................................................................................................................................................................................................CG------ACAT------CAG---------CTA-------------------------------AGTCAAAACAAGA......................................................................................................................................................................................2560.1711000000
.......................................................................................................................................................................................................................................................................................................TA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGTT......................................................................................................................................................2560.1710000010
....ATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.1711000000
......C---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1711000000
...........................................................................................................................................................................................................................................................................................AG---------CTA-------------------------------AGTCAAAACAAGAATTTTC----------------------TGT.......................................................................................................................................................2760.1711000000
....ATC---A----------AAT---TCAAAGG------------------------------AGCC----------TC-TACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.1711000000
........................................................................................................................................................A---------GCAACAGC---A---------------------GCAAC---AACAACAGC.......................................................................................................................................................................................................................................................................................................................2470.1411000000
....................................................................................CAGCAGCAGA------AGC---------AG----------C---------AACAACAG.............................................................................................................................................................................................................................................................................................................................................................................................2480.1311000000
.............................................................................................................................................................................A---------------------GCAAC---AACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................21200.1020002000
.....................................................................................AGCAGCAGA------AGC---------AG----------C---------AACAACAGT............................................................................................................................................................................................................................................................................................................................................................................................24140.0710000100
........................................................................................................................................................A---------GCAACAGC---A---------------------GCAAC---AACAACA.........................................................................................................................................................................................................................................................................................................................22150.0710000100
.........................................................................................................................................................................C---A---------------------GCAAC---AACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................22200.0510100000
....................................................................................................................................................................................................CAAC---AACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................19200.0510001000
......................................................................................................................................................................CAGC---A---------------------GCAAC---AACAACAGCAGCA...................................................................................................................................................................................................................................................................................................................23200.0510000100
....................................................................................................................................................................................................CAAC---AACAACAGCAGCAGCA................................................................................................................................................................................................................................................................................................................20200.0510000100
........................................................................................................................................................................GC---A---------------------GCAAC---AACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................23200.0510100000
.............................................................................................................................................................................................................CAACAGCAGCAGCAA------------------------------CAAC.............................................................................................................................................................................................................................................................................19200.0511000000

Generated: 05/18/2015 at 12:36 AM