ID:

dwi_105

 Coordinate:

scf2_1100000004595:125009-125067 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-34.6

Flybase annnotation

Antisense to intron [Dwil\GK20295-in]

No Repeatable elements found

mature
  1. dwi_104  scf2_1100000009154:738-759 +
  2. dwi_106  scf2_1100000004595:70715-70736 -
  3. dwi_105  scf2_1100000004595:125009-125030 +
star

Sense Strand Reads

TCGAAAACCAAATGTATGTTTACTAAATTGTTTTTACATACTTCAGATTGATCGAGATAGTATATGCTACTATCTCGCATGTACTAGTAGCATACACTATCTCGATCACTCTACAAACAAACACAGCTACTACAAACGCAGCTACTAACCAACGGACAA
***********************************.........(((.(((((((((((((.((((((((((............)))))))))).))))))))))))).)))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
..................................................ATCGAGATAGTATATGCTACTA....................................................................................... 22 0 3 9.33 28 21 4 3
..................................................ATCGAGATAGTATATGCTACT........................................................................................ 21 0 3 3.33 10 6 2 2
..................................................ATCGAGATAGTATATGCTACTAA...................................................................................... 23 1 3 3.00 9 9 0 0
..................................................ATCGAGATAGTATATGATACT........................................................................................ 21 1 3 0.33 1 1 0 0
..................................................ATCGAGATAGCATATGCTACTAA...................................................................................... 23 2 3 0.33 1 1 0 0
........................................................................................................................................CGCAGCTACTAACCAACGGAC.. 21 0 3 0.33 1 0 1 0
......................................................................................GTAGAATACACTATCTCGATCA................................................... 22 1 3 0.33 1 1 0 0
..................................................ACCGAGATAGTATATGCTACTA....................................................................................... 22 1 3 0.33 1 0 0 1
.CGAAAACCAAATGTATGTTTA......................................................................................................................................... 21 0 20 0.05 1 0 1 0

Anti-sense strand reads

AGCTTTTGGTTTACATACAAATGATTTAACAAAAATGTATGAAGTCTAACTAGCTCTATCATATACGATGATAGAGCGTACATGATCATCGTATGTGATAGAGCTAGTGAGATGTTTGTTTGTGTCGATGATGTTTGCGTCGATGATTGGTTGCCTGTT
***********************************.........(((.(((((((((((((.((((((((((............)))))))))).))))))))))))).)))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
............................................................................................CCGTGATAGAGCTAGTGAGATG............................................. 22 2 3 0.67 2 2 0
.........................................................................................CGTATGTGATAGAGCTAGTG.................................................. 20 0 3 0.33 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004595:124959-125117 + dwi_105 TCGAAAACCAAATGTATGTTTACTAAATTGTTTTTACATACTTCAGATTGATCGAGATAGTATATGCTACTATCTCGCATGTACTAGTAGCATACACTATCTCGATCACTCTACAAACAAACACAGCTACTACAAACGCAGCTACTAACCAACGGACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TCGAAAACCAAATGTATGTTTACTAAATTGTTTTTACATACTTCAGATTGATCGAGATAGTATATGCTACTATCTCGCATGTACTAGTAGCATACACTATCTCGATCACTCTACAAACAAACACAGCTACTACAAACGCAGCTACTAACCAACGGACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................ATCGAGATAGTATATGCTACTA.......................................................................................2239.3328040213
..................................................ATCGAGATAGTATATGCTACT........................................................................................2133.331002062
..................................................ATCGAGATAGTATATGCTACTAA......................................................................................2333.00900090
........................................................................................................................................CGCAGCTACTAACCAACGGAC..2130.33101000
.CGAAAACCAAATGTATGTTTA.........................................................................................................................................21200.05101000

Generated: 05/15/2015 at 02:40 PM