ID:

dwi_1048

 Coordinate:

scf2_1100000004515:1098719-1098962 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.22 -15.08 -14.92

Flybase annnotation

CDS [Dwil\GK19992-cds]; exon [dwil_GLEANR_2592:1]; exon [dwil_GLEANR_2592:2]; CDS [Dwil\GK19992-cds]; intron [Dwil\GK19992-in]

Repeatable elements

NameClassFamilyStrand
(ATG)nSimple_repeatSimple_repeat+
(TC)nSimple_repeatSimple_repeat+
mature
star
  1. dwi_1048  scf2_1100000004515:1098828-1098847 +
  2. scf2_1100000004762:4195845-4195864 -
  3. scf2_1100000004768:1013981-1014000 -
  4. scf2_1100000004943:9893895-9893914 +

Sense Strand Reads

--################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATGCAATATAGTCTCTGGTTTGGGCTTTTCGCCGTAGTTGCCGCACCGGTAAGTGCCTCCCAATCCCCATCTCAATCTTAATCTCAATCCCAATCTCCTATCTCTATCTCTATGATTTTCCTAATGGATTGAAGATGATCATGATGATAATGATGTTGATGTTGGTGATGATGATGATGATGATGATGATGATTCCGATACTGATAATGGGAACTAATATTGATTTCTTTTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTATTTCTCTCTGTGTCGTACAGTTGGTGAGCGCTAACTATGGTCCAGGTGCTGGCGGACCAAGTGGTTCATA
***************************************************************************************************************************************************************..((((((.(((.((.((.((....)).)).)).))))))))).(((((..((((...(((((.................................................)))))..))))..))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 M020
head
 V119
head
...........................................................................................................................TAGGGGATCGAAGATGATCA......................................................................................................................................................................................................... 20 3 8 16.00 128 46 59 22 0 1
...........................................................................................................................TAGGGGATCGAAGATGATC.......................................................................................................................................................................................................... 19 3 15 4.93 74 27 25 15 6 1
............................................................................................................................AGGGGATCGAAGATGATCA......................................................................................................................................................................................................... 19 3 20 1.90 38 18 7 13 0 0
.................................................................................................................................................................................................................................................................................................................................GCTGGCGGACCAAGTGGT..... 18 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................TAAGGGATCGAAGATGATC.......................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................................................................................................GCACCGTTGGTGAGCGCTAACT.................................. 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................ATGGTCCAGGTGCTGGCGGACC............ 22 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................GTATTTCTCTCTGTGTCGTACAG.................................................. 23 0 1 1.00 1 1 0 0 0 0
......AATATAGTCTCTGGTTTGGGCT............................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................ATGGTCCAGGTGCTGGCGGACCAAGTG....... 27 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................TACGGGATCGAAGATGATCA......................................................................................................................................................................................................... 20 3 3 0.67 2 0 2 0 0 0
........................................................................................................................................................................................................................................................................................................................GGTTCAGGTCCTGGCGGA.............. 18 2 2 0.50 1 1 0 0 0 0
.................AGGGTTGGGCTTTTCGCC..................................................................................................................................................................................................................................................................................................................... 18 2 4 0.50 2 1 0 0 1 0
...........................................................................................................................TAGGGGATTGAAGATGATCA......................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................GATGTTGGTGATGATGATGA..................................................................................................................................................................... 20 0 4 0.50 2 0 0 0 0 2
............................................................................................................................................................................ATGATGATGATGATGATGATGATTC................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................CTAGGGGATCGAAGATGATC.......................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 1 0 0
...........................................................................................................................TAGGGGATTGAAGATGATC.......................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
............................................................................................................................AGTGGATCGAAGATGATCA......................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0
.......................................................................................................................................................................TGATGATGATGATGATGA............................................................................................................................................................... 18 0 20 0.30 6 0 0 6 0 0
..........................................................................................................................TTAGTGGATCGAAGATGATC.......................................................................................................................................................................................................... 20 3 7 0.29 2 1 1 0 0 0
..........................................................................................................................TTAGGGGATTGAAGATGATCA......................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
...........................................................................................................................TTAGGGATCGAAGATGATCA......................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0
...........................................................................................................................TACGGGATCGAAGATGATC.......................................................................................................................................................................................................... 19 3 7 0.14 1 0 1 0 0 0
.............................................................................................................................AGGGATCGAAGATGATCA......................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0
..............................................................................................................................................................................GATGATGATGATGATGATGATT.................................................................................................................................................... 22 0 20 0.10 2 0 0 1 0 1
................AAGGTTTGGGCTGTTCGCC..................................................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 2 0
.............................................................................................................................GGGGATTGAAGATGATCA......................................................................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0
........................................TGCAGCACCGGTAATTGC.............................................................................................................................................................................................................................................................................................. 18 2 16 0.06 1 0 0 1 0 0
..........................................................................................................................................GATCTTGACGATAATGTTGTTG........................................................................................................................................................................................ 22 3 18 0.06 1 1 0 0 0 0
.............................................................................................................................GGGGATCGAAGATGATCAT........................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................ATGATGATGATGATGATGATT.................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................TATGGGATCGAAGATGATC.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.................AGGGTTGGGCTATTCGCC..................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................ATGATGTTCATGTAGGTG............................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................GATGATGATGATGATGATG.......................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TATACGTTATATCAGAGACCAAACCCGAAAAGCGGCATCAACGGCGTGGCCATTCACGGAGGGTTAGGGGTAGAGTTAGAATTAGAGTTAGGGTTAGAGGATAGAGATAGAGATACTAAAAGGATTACCTAACTTCTACTAGTACTACTATTACTACAACTACAACCACTACTACTACTACTACTACTACTACTAAGGCTATGACTATTACCCTTGATTATAACTAAAGAAAAGAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACATAAAGAGAGACACAGCATGTCAACCACTCGCGATTGATACCAGGTCCACGACCGCCTGGTTCACCAAGTAT
**************************************************..((((((.(((.((.((.((....)).)).)).))))))))).(((((..((((...(((((.................................................)))))..))))..))))).....*************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V119
head
 V118
embryo
................GACCAAACCCGACAAGGGGCAA.................................................................................................................................................................................................................................................................................................................. 22 3 1 81.00 81 72 7 2 0
................GACCAAACCCGACAAGGGG..................................................................................................................................................................................................................................................................................................................... 19 2 1 49.00 49 49 0 0 0
................GACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 21 2 1 47.00 47 42 4 1 0
................GACCAAACCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 20 2 1 28.00 28 26 1 1 0
.................ACCAAACCCGACAAGGGGCAA.................................................................................................................................................................................................................................................................................................................. 21 3 3 16.33 49 43 4 2 0
.................ACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 20 2 1 16.00 16 16 0 0 0
.................ACCAAACCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 19 2 2 9.50 19 19 0 0 0
..............GAAACCAAACCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 22 3 1 9.00 9 9 0 0 0
..............GAAACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 23 3 1 7.00 7 7 0 0 0
..................CCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 19 2 3 7.00 21 21 0 0 0
...............AAACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 22 3 4 6.50 26 22 3 1 0
...............GGACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 22 3 1 6.00 6 6 0 0 0
................AACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 21 3 7 3.43 24 19 5 0 0
...............AAACCAAACCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 21 3 6 2.50 15 13 0 2 0
...............GGACCAAACCCGACAAGGGG..................................................................................................................................................................................................................................................................................................................... 20 3 5 2.20 11 11 0 0 0
..............GAAACCAAACCCGACAAG........................................................................................................................................................................................................................................................................................................................ 18 2 20 1.65 33 33 0 0 0
..............GAAACCAAACCCGACAAGGGG..................................................................................................................................................................................................................................................................................................................... 21 3 5 1.60 8 8 0 0 0
................................TGGCATCAACGGCGTGGCCTAT.................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0
...............AGACCAAACCCGACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................GACCGCCTGGTTCACCAAGTA. 21 0 1 1.00 1 1 0 0 0
.............................TGGTGGCATCAACGGCGTGGCC..................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0
................GACCAAACCCGACAAGGG...................................................................................................................................................................................................................................................................................................................... 18 2 6 1.00 6 6 0 0 0
................GACCAAACCCGACAAGTGGC.................................................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0
................AACCAAACCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 20 3 14 0.86 12 12 0 0 0
................GACCAAACCCCACAAGGGGCA................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
.................ACCAAACCCGACAAGGGG..................................................................................................................................................................................................................................................................................................................... 18 2 7 0.43 3 3 0 0 0
................AACCAAACCCGACAAGCGGCAA.................................................................................................................................................................................................................................................................................................................. 22 3 3 0.33 1 0 1 0 0
................GACCAAATCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0
..............GAAACCAAACCCGACAAGGG...................................................................................................................................................................................................................................................................................................................... 20 3 20 0.20 4 4 0 0 0
..................................................................................................................................................................................................................................................................................................................................GACCGCCGGGTTGACCATGT.. 20 3 5 0.20 1 1 0 0 0
..............AAGACCAAACCCGACAAGGGG..................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0
..............GGGACCAAACCCGACAAG........................................................................................................................................................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0
..................CCAAACCCGACAAGGGGC.................................................................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0
.......................................................TCTGAGGGTTAGGGGTAG............................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 1 0 0
.............................................................................................................................................................................................................................................AGAAAGAGAGAGAGAGAGA........................................................................................ 19 0 20 0.10 2 0 0 0 2
..............AGGACCAAACCCGACAAGC....................................................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0
....................................................................................................................................................................................................................CGTGATGATAACTCAAGAAA................................................................................................................ 20 3 11 0.09 1 0 0 0 1
.........................................................GCAGGGTTACGGGTAGGGTTA.......................................................................................................................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0
.................ACCAAACCCGAAAAGGGCAA................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0
....................................................................................................................................................................ACCACTACTACTACTACTACTACTA........................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0
........................................................................................GAGGGTTAGAGGATAGGGTT............................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004515:1098669-1099012 + dwi_1048 ATATGCAATATAGTCTCTGGTTTGGGCTTTTCGCCGTAGTTGCCGCACCGGTAAGTGCCTCCCAATCCCCATCTC----------------------------AATCTTAATCTC-------------------------------------------------------------------------------AATCCCAATCTC-CT--------------A----TCTCTAT-CTCTATGATT--TTCCTA----------------ATGGATT-----------------------------------GAAG----------ATGATCATGATGAT--AATGATG----TTGA-----------------------------TGTTGGTG---ATGATGA------------TGATGATGATGATGATGATTCC---------------------------GATACTGATAATGGGAAC----------------------------------TA--------------------------------ATATTGATTTCTTTTCTTCTCTTTCT------------C-TCTCTCTCTCTCTCTCTCTCTCTTTTG----TATTTCTCTCTGTGTCGTACAGTTGGTGAGC--------------------------------------------------------------------------------------------------------------------------------------GC----TAACTATGGTCCAGGTGCTGGCGGACCAAGTGGTTCATA
droVir3 scaffold_13042:2972544-2972707 + CTAATG-------------------------------------------------------CTAATGCTAATGC----------------------------------TAATGCT----------------------------------------------------------------------AATGCTAA----------------TGCTAATGCT----------------------------------AATGCTAATGCTAATGCT---AATGCTAATGA-TAATGATAATGA----------------TAATGATAA----TGA------TAAT--GATAAT-G---ATAATG---------ATAATGATAA--TGATAATGATAATG------ATAA------------TGATAATGATAAT------------------------------------------GATA------ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------
droMoj3 scaffold_6308:564219-564388 - CTAATG-------------------------------------------------------CTAATACTATTAC----------------------------------TAATATT----------------------------------------------------------------------AATGCTAAAGTTAT----------TACTAATTCT----------------------------------AATGGTAATGATAATGAT---AATGATAATAA-TAATGATAATGA----------------TAATGATAA----TGA------TAAT--GATAAT-G---ATAATG---------ATAATGATAA--TGATAATGATAATG------ATAA------------TGATAATGATAAT------------------------------------------GATA------ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------
droGri2 scaffold_15245:14166035-14166220 - ATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------GCGA---TCA-----------TG----ATGA--------------------------TGATGA---TGATGAAGATGATGATGATGATGATGATGATGATGATGAT------------------------------------------G------ACA-------------------------------ATTG--------------------------------TACG---------------------------------------------------------------------------------------------------------------------------------------------GAACCGTCACTCGCTTCCACTTCCGTTCGGCTTTTATTG-------------TTTTCGCACCTCGCCTTCCGTTCGTTTGGCGCTCGGGTCGCGATCGGTCGACGCCATCGATGCCGGCGGA--------------
dp5 XL_group1a:4033727-4033860 - ATACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT----------GATGATAATGA----------------TGATGGTTA----TGA------TGAT--GATGTT-A---TTGATG---------ATAACGATGA--TGATGATGATGATG------ATGA------------TGATGATGATGGT------------------------------------------GATGATG---G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:7860187-7860387 + GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCATAA-----------TG----ATGA-----------------------TGATGATGATGATG------ATGA------------TGATGATGATGATGAT------------------------------------------G------ATGTGTTTATTCCTATATAGTGAGGGGTTGGGGGCTCAGTACACACTCTCATATATGGCCTTCTCATGGTTCAT------CATGTCTTCGCTGTCTGTGAGTGTGTTTT-ACCCCCCCTCTGGCTCCCTCTCTTCTGGTCTCAATTCTTTTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------
droAna3 scaffold_12943:3579822-3579995 + GGG----ATTCAGTCTC--GGATCCAGCTTCTTCG--------------------------------------------------CCTTGCAGGAT----------CCGGAACCGGATCCACCAGATCCTA---------------------------------------------------------ATC-CCAGGCCACCTCCA------------------------CCACC-CCCCG----T--CGC--C----------------GTCAGAT-----------------------------------GGTG-------------A---TGG-----------TG----ATGG--------------------------TGGTGG---TGGTGCTGCTGC------------TGCTGATGATGATGGT---------GATGCCGGT----GCGGAT-----------GCTG------CGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396696:571228-571370 - TCTC------------------------------TATCTC-----------------------------TCTCTCTCTCTCTCTC----TCAACAC--ACATA---------------------------------CTACT-------------------------------------------------T-ACTC----TCTCTATCT--------------A----TCGCACT-CACTGTGTTTTTTGT--C----------------TTTTTGT----------GAT----------------------GA-------------TGA---TGA-----------TG----ATGA-----------------------TAATGATGATGATG------ATGA------------TTGCGATGATGATGAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302291:20901-21136 + ACATGAAACTCGGTCTCTGGTTTGGCATCTTCGCCATCGCCGCCGCGCCGGTTAGTAATTCCCAAC------------------------------------------------------------TCCTAACACGCTGCCTCCTTCCTCTGTAATTTCCGACTAAATATTTCGCGGCGGAGGGATACGTG-TAACTCGCAACTAATCT--------------CTTTGCC--ACCTTCTTG----T--CTC--C----------------CTCAGCT-----------------------------------GGTG-------------A------G-----------------CGCTA---------ACTATGG--------CCATGGGCACG------GTCA------------TGGCCACCACAGTGGT------------------------------------------G------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453826:683503-683625 - CTCAAC----------------------------------------------------------------------------------------------------CTCAATTTG-----------------------------------------------------------------------------GACCACC----------ATCTCT--C-----C----TCCTCCT-TCCCATGCTT--GTTGTT-----GTTGGTATTGCTCCTGTT-----------------------------------GA-------------TGA---TCA-----------TG----ACGA-----------------------CGATGGTGATGATG------ATGA------------TGATGATGATGTT------------------------------------------GCTC------CTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491044:892869-893013 - TTAGGT-------------------------------------------------------TG----------------------------------------------AATTTC----------------------------------------------------------------------AATTT------CGC----------AGCTAT--CT-----------------CTTTT-----------------------------------TGCTACTTAC-TT-------------------------TG-------------A------TTACACAA---TG----ATGA-----------------------TGATGTTGATGATG------ATGA------------TGATGATGATGATGAA------------------------------------------A------GCT----------------------------------C-----------------------C--------ACTTTGCTTCATTATTTTTTTTTTGT------------T-TCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCC-------------------------------------------------ATC--------------------------
droRho1 scf7180000769923:3999-4163 + ATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT-----------------------------------GATG-------------A------TGATAAGA---GG----ATGA-----------------------------CGATGACG------ATGA------------TGATGATGATGATGAT------------GACGTTCCTTGCAGAGGATACAACCCTCAT-----------------------------------------------------------GCAACGTTGT-----TGTTCATTGATTTTCTTTTTTATTTTTTG------------TGTTCCCCCTTTTGGTTTGCTCCTCTT----------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTCCACCC----------------------------------------AG--------------
droBia1 scf7180000301709:259300-259458 - ATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------ATGA---TGA-----------TG----ATGA--------------------------TGATGA---TGATGATGATGA---------------TGATGATGA---G---ATGGACATTGAGTTT---------------------GAGG------ACG-------------------------------TTTG--------------------------------ATAT---------------------------------------------------------------------------------------------------------------------------------------------GGTCCGTTTTTTTTTAATCTTACCAACTAGCTCTTACAATGTAGAACCAACTTTTCCTTTCTTCATTTTCTTCTCTATTG----------------------------------------TA--------------
droTak1 scf7180000415399:908217-908391 - GCGGGTGATTT--------------------------------------------------C----------------------------------------------CAATATT----------------------------------------------------------------------ATTCCC-AAGA----TATTGATCTTTCGAATTCC------------------AATAGGTCTTCTGA--T--------TTTTACATT---GATGATGATGA-TGATGATGATGATGATGATGATGATG-----------ATGATGA-----------------T-GATGATGATG---------ATGATGAT--GATGATGATGATGATG------ATGA------------TGATGATGATGAT------------------------------------------GATG------ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409040:73998-74208 + CATC---------------------------------------------------------TG----------------------------------------AATCTGAATCTG----------------------------------------------------------------------AATGTG-AAGTTGC----------AACTGT--CGAATG-------------TTCGAT-----------------------------------GATGAT----------------------CG--C----TG-------ATGACTA---AAA-----------TG----ATGATCATAATAACCATAATGA-----------TGA---TG------ATGA------------TGATGATGATGGT------------------------------------------------------G----------------------------------C-----------------------T--------G-----------------------------------------------------------------------------------------------------GATGATGGCGACGTTATTGTGCCAAGGTAAGAGATCGTTGCCAAATTTGTTTTTCTTTTTCGTTTTTTTTTGTTTTTTTTTG-------------GTTTTC-------------------------------------------------TTT--------------------------
dm3 chrX:5123935-5124130 + ATATGCGATTTCATCTC--GTTTGTTGCTTTCTCTGTCTC-----------------------------TATCTCTCTCTCTCTCTCTTTCAACACTCACATAAA----------TATA------------------------------------------------------------TATATATATATA-CAAATCCAACTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT-----------------------------------GATG-------------A------TGATTTGA---TG----ATGA------------------T--AATAATGATGATGATG------ATGA------------TGGTTATGATGATAAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:4772266-4772443 + ATATGCGATTTCATCTC--GTTTGTTGCTTTCTCTGTCTC-----------------------------TATCTCTCTCTCTCTCTC--TCCACACTCACATAAA----------TAT----------------------------------------------------------------------ATA-TAAATCCAACTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT-----------------------------------GATG-------------A------TGATTTGA---TG----ATGA--------------------------TAATGATGATG------ATGA------------TGGTTATGATGATGAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_21:464118-464244 + ATTT---------------------------------------------------------CG----------------------------------------AAACCAAAC----------------------------------------------------------------------------------------------------TCT--C-----------------------------------------------CACTTT---GTTGATAATTAC-CATGACAATGATGATGATGA--ATG-----------ATGACGA---TAA-----------CG----ATGA-----------------------CGATGTCGATGATA------ATGA------------TGATGATGATGA---CAATT---------------------------ACAACCGTGATGATG---G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:14297714-14297855 + CATC---------------------------------------------------------TG----------------------------------------AATCCGAATCTG-----------------------------------------------------------------------------AAGTTGC----------AACTGT--CGAATG-----------T-TTCGAT-----------------------------------GATGATCGCCGATGACGCTGA---TGACTATAATG-----------ATGATGA------TGA--------TA----ATGATG---------ATGATGAT--GACAATGGTGATAATG------ATGA------------TGATGATGATGGT------------------------------------------GGTG------GTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:2478928-2479102 + ATATGCGATTTCGTCTC--GTTTGTTGCTTTCTCTGTCTC-----------------------------TATCTCTCTCTTTCTC----TCCACACTTACATTAA----------TAT--------------------------------------------------------------------ATATA-TAAATCCAACTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT-----------------------------------GATG-------------A------TGATTTGA---TG----A-----------------------------TAATGATGATG------ATGA------------TGGTTATGATGATGAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATATGCAATATAGTCTCTGGTTTGGGCTTTTCGCCGTAGTTGCCGCACCGGTAAGTGCCTCCCAATCCCCATCTC----------------------------AATCTTAATCTC-------------------------------------------------------------------------------AATCCCAATCTC-CT--------------A----TCTCTAT-CTCTATGATT--TTCCTA----------------ATGGATT-----------------------------------GAAG----------ATGATCATGATGAT--AATGATG----TTGA-----------------------------TGTTGGTG---ATGATGA------------TGATGATGATGATGATGATTCC---------------------------GATACTGATAATGGGAAC----------------------------------TA--------------------------------ATATTGATTTCTTTTCTTCTCTTTCT------------C-TCTCTCTCTCTCTCTCTCTCTCTTTTG----TATTTCTCTCTGTGTCGTACAGTTGGTGAGC--------------------------------------------------------------------------------------------------------------------------------------GC----TAACTATGGTCCAGGTGCTGGCGGACCAAGTGGTTCATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCGGACCAAGTGGT.....1811.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCCAGGTGCTGGCGGACC............2211.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TATTTCTCTCTGTGTCGTACAG............................................................................................................................................................................................2311.00101000
......AATATAGTCTCTGGTTTGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCCAGGTGCTGGCGGACCAAGTG.......2711.00101000
...................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------TGTTGGTG---ATGATGA------------TGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2040.50200002
................................................................................................................................................................................................................................................................................................................................................................................................................ATGA------------TGATGATGATGATGATGATTC...........................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
........................................................................................................................................................................................................................................................................................................................................................................................................TG---ATGATGA------------TGATGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................18200.30600060
..................................................................................................................................................................................................................................................................................................................................................................................................................GA------------TGATGATGATGATGATGATT............................................................................................................................................................................................................................................................................................................................................................................................................22200.10200011
...................................................................................................................................................................................................................................................................................................................................................................................................................A------------TGATGATGATGATGATGATT............................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA------------TGATGATGATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
droVir3
CTAATG-------------------------------------------------------CTAATGCTAATGC----------------------------------TAATGCT----------------------------------------------------------------------AATGCTAA----------------TGCTAATGCT----------------------------------AATGCTAATGCTAATGCT---AATGCTAATGA-TAATGATAATGA----------------TAATGATAA----TGA------TAAT--GATAAT-G---ATAATG---------ATAATGATAA--TGATAATGATAATG------ATAA------------TGATAATGATAAT------------------------------------------GATA------ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................T---AATGCTAATGA-TAATGATAATGA----------------TAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.171000000000000000000000000000000000000001000000000000000000000000
..............................................................TAATGCTAATGC----------------------------------TAATGCT----------------------------------------------------------------------AATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
............................................................................................................TAATGCT----------------------------------------------------------------------AATGCTAA----------------TGCTAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
....................................................................TAATGC----------------------------------TAATGCT----------------------------------------------------------------------AATGCTAA----------------TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
.TAATG-------------------------------------------------------CTAATGCTAATGC----------------------------------TAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................TAATGA-TAATGATAATGA----------------TAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
CTAATG-------------------------------------------------------CTAATACTATTAC----------------------------------TAATATT----------------------------------------------------------------------AATGCTAAAGTTAT----------TACTAATTCT----------------------------------AATGGTAATGATAATGAT---AATGATAATAA-TAATGATAATGA----------------TAATGATAA----TGA------TAAT--GATAAT-G---ATAATG---------ATAATGATAA--TGATAATGATAATG------ATAA------------TGATAATGATAAT------------------------------------------GATA------ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------GCGA---TCA-----------TG----ATGA--------------------------TGATGA---TGATGAAGATGATGATGATGATGATGATGATGATGATGAT------------------------------------------G------ACA-------------------------------ATTG--------------------------------TACG---------------------------------------------------------------------------------------------------------------------------------------------GAACCGTCACTCGCTTCCACTTCCGTTCGGCTTTTATTG-------------TTTTCGCACCTCGCCTTCCGTTCGTTTGGCGCTCGGGTCGCGATCGGTCGACGCCATCGATGCCGGCGGA--------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATGATGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09110
.................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGAT------------------------------------------G------ACA-------------------------------.............................................................................................................................................................................................................................................................................................................................19200.05110
dp5
ATACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT----------GATGATAATGA----------------TGATGGTTA----TGA------TGAT--GATGTT-A---TTGATG---------ATAACGATGA--TGATGATGATGATG------ATGA------------TGATGATGATGGT------------------------------------------GATGATG---G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................AACGATGA--TGATGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000100000
..................................................................................................................................................................................................................................................................................................................................................................................AACGATGA--TGATGATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATG------ATGA------------TGAT............................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATG------ATGA------------TGATGATGATGGT------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCATAA-----------TG----ATGA-----------------------TGATGATGATGATG------ATGA------------TGATGATGATGATGAT------------------------------------------G------ATGTGTTTATTCCTATATAGTGAGGGGTTGGGGGCTCAGTACACACTCTCATATATGGCCTTCTCATGGTTCAT------CATGTCTTCGCTGTCTGTGAGTGTGTTTT-ACCCCCCCTCTGGCTCCCTCTCTTCTGGTCTCAATTCTTTTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................GA-----------------------TGATGATGATGATG------ATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATG------ATGA------------TGAT............................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGAT------------------------------------------G------ATGT...........................................................................................................................................................................................................................................................................................................................................................21200.051000001
droAna3
GGG----ATTCAGTCTC--GGATCCAGCTTCTTCG--------------------------------------------------CCTTGCAGGAT----------CCGGAACCGGATCCACCAGATCCTA---------------------------------------------------------ATC-CCAGGCCACCTCCA------------------------CCACC-CCCCG----T--CGC--C----------------GTCAGAT-----------------------------------GGTG-------------A---TGG-----------TG----ATGG--------------------------TGGTGG---TGGTGCTGCTGC------------TGCTGATGATGATGGT---------GATGCCGGT----GCGGAT-----------GCTG------CGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................TGG---TGGTGCTGCTGC------------TGCT............................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
TCTC------------------------------TATCTC-----------------------------TCTCTCTCTCTCTCTC----TCAACAC--ACATA---------------------------------CTACT-------------------------------------------------T-ACTC----TCTCTATCT--------------A----TCGCACT-CACTGTGTTTTTTGT--C----------------TTTTTGT----------GAT----------------------GA-------------TGA---TGA-----------TG----ATGA-----------------------TAATGATGATGATG------ATGA------------TTGCGATGATGATGAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACATGAAACTCGGTCTCTGGTTTGGCATCTTCGCCATCGCCGCCGCGCCGGTTAGTAATTCCCAAC------------------------------------------------------------TCCTAACACGCTGCCTCCTTCCTCTGTAATTTCCGACTAAATATTTCGCGGCGGAGGGATACGTG-TAACTCGCAACTAATCT--------------CTTTGCC--ACCTTCTTG----T--CTC--C----------------CTCAGCT-----------------------------------GGTG-------------A------G-----------------CGCTA---------ACTATGG--------CCATGGGCACG------GTCA------------TGGCCACCACAGTGGT------------------------------------------G------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTCAAC----------------------------------------------------------------------------------------------------CTCAATTTG-----------------------------------------------------------------------------GACCACC----------ATCTCT--C-----C----TCCTCCT-TCCCATGCTT--GTTGTT-----GTTGGTATTGCTCCTGTT-----------------------------------GA-------------TGA---TCA-----------TG----ACGA-----------------------CGATGGTGATGATG------ATGA------------TGATGATGATGTT------------------------------------------GCTC------CTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTAGGT-------------------------------------------------------TG----------------------------------------------AATTTC----------------------------------------------------------------------AATTT------CGC----------AGCTAT--CT-----------------CTTTT-----------------------------------TGCTACTTAC-TT-------------------------TG-------------A------TTACACAA---TG----ATGA-----------------------TGATGTTGATGATG------ATGA------------TGATGATGATGATGAA------------------------------------------A------GCT----------------------------------C-----------------------C--------ACTTTGCTTCATTATTTTTTTTTTGT------------T-TCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCC-------------------------------------------------ATC--------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT-----------------------------------GATG-------------A------TGATAAGA---GG----ATGA-----------------------------CGATGACG------ATGA------------TGATGATGATGATGAT------------GACGTTCCTTGCAGAGGATACAACCCTCAT-----------------------------------------------------------GCAACGTTGT-----TGTTCATTGATTTTCTTTTTTATTTTTTG------------TGTTCCCCCTTTTGGTTTGCTCCTCTT----------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTCCACCC----------------------------------------AG--------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------ATGA---TGA-----------TG----ATGA--------------------------TGATGA---TGATGATGATGA---------------TGATGATGA---G---ATGGACATTGAGTTT---------------------GAGG------ACG-------------------------------TTTG--------------------------------ATAT---------------------------------------------------------------------------------------------------------------------------------------------GGTCCGTTTTTTTTTAATCTTACCAACTAGCTCTTACAATGTAGAACCAACTTTTCCTTTCTTCATTTTCTTCTCTATTG----------------------------------------TA--------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCGGGTGATTT--------------------------------------------------C----------------------------------------------CAATATT----------------------------------------------------------------------ATTCCC-AAGA----TATTGATCTTTCGAATTCC------------------AATAGGTCTTCTGA--T--------TTTTACATT---GATGATGATGA-TGATGATGATGATGATGATGATGATG-----------ATGATGA-----------------T-GATGATGATG---------ATGATGAT--GATGATGATGATGATG------ATGA------------TGATGATGATGAT------------------------------------------GATG------ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CATC---------------------------------------------------------TG----------------------------------------AATCTGAATCTG----------------------------------------------------------------------AATGTG-AAGTTGC----------AACTGT--CGAATG-------------TTCGAT-----------------------------------GATGAT----------------------CG--C----TG-------ATGACTA---AAA-----------TG----ATGATCATAATAACCATAATGA-----------TGA---TG------ATGA------------TGATGATGATGGT------------------------------------------------------G----------------------------------C-----------------------T--------G-----------------------------------------------------------------------------------------------------GATGATGGCGACGTTATTGTGCCAAGGTAAGAGATCGTTGCCAAATTTGTTTTTCTTTTTCGTTTTTTTTTGTTTTTTTTTG-------------GTTTTC-------------------------------------------------TTT--------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATATGCGATTTCATCTC--GTTTGTTGCTTTCTCTGTCTC-----------------------------TATCTCTCTCTCTCTCTCTTTCAACACTCACATAAA----------TATA------------------------------------------------------------TATATATATATA-CAAATCCAACTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT-----------------------------------GATG-------------A------TGATTTGA---TG----ATGA------------------T--AATAATGATGATGATG------ATGA------------TGGTTATGATGATAAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................G----ATGA------------------T--AATAATGATGATGATG------ATGA------------................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATG------ATGA------------TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................19202.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000100020000000000000000000000000000000000000000000000000000000000000000200131300000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CTCTATCT--------------A----TCGCACT-CACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTCATCTC--GTTTGTTGCTTTCTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTCTGTCTC-----------------------------TATCTCTCTCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TG----ATGA------------------T--AATAATGATGATGATG------AT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................T-----------------------------------GATG-------------A------TGATTTGA---TG----ATGA------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GATG-------------A------TGATTTGA---TG----ATGA------------------T--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GATG-------------A------TGATTTGA---TG----ATGA------------------T--AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATG------ATGA------------TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................18200.75150000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000220000000000000000000000200400000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATG------ATGA------------TGGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATGA------------------T--AATAATGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATG------ATGA------------TGGT............................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATATGCGATTTCATCTC--GTTTGTTGCTTTCTCTGTCTC-----------------------------TATCTCTCTCTCTCTCTC--TCCACACTCACATAAA----------TAT----------------------------------------------------------------------ATA-TAAATCCAACTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT-----------------------------------GATG-------------A------TGATTTGA---TG----ATGA--------------------------TAATGATGATG------ATGA------------TGGTTATGATGATGAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................A--------------------------TAATGATGATG------ATGA------------TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................1930.67200002000000000000
.......................................................................TCTCTCTCTCTCTCTC--TCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000100000000000
...........................................................................................................................................................................................................................................................................................................................................................TG----ATGA--------------------------TAATGATGATG------ATGA------------TGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
.....CGATTTCATCTC--GTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.15300000000102000000
.....................................................................................................................................................................................................................................................................................................................................................TGA---TG----ATGA--------------------------TAATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.11100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................AATGATGATG------ATGA------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................TGA---TG----ATGA--------------------------TAATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.08100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................TG----ATGA--------------------------TAATGATGATG------ATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................20120.08100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................TGA---TG----ATGA--------------------------TAATGATGATG------ATGA------------TGA.............................................................................................................................................................................................................................................................................................................................................................................................................................27190.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................TG----ATGA--------------------------TAATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................TAATGATGATG------ATGA------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
ATTT---------------------------------------------------------CG----------------------------------------AAACCAAAC----------------------------------------------------------------------------------------------------TCT--C-----------------------------------------------CACTTT---GTTGATAATTAC-CATGACAATGATGATGATGA--ATG-----------ATGACGA---TAA-----------CG----ATGA-----------------------CGATGTCGATGATA------ATGA------------TGATGATGATGA---CAATT---------------------------ACAACCGTGATGATG---G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CATC---------------------------------------------------------TG----------------------------------------AATCCGAATCTG-----------------------------------------------------------------------------AAGTTGC----------AACTGT--CGAATG-----------T-TTCGAT-----------------------------------GATGATCGCCGATGACGCTGA---TGACTATAATG-----------ATGATGA------TGA--------TA----ATGATG---------ATGATGAT--GACAATGGTGATAATG------ATGA------------TGATGATGATGGT------------------------------------------GGTG------GTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................GATAATG------ATGA------------TGATGATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAATG------ATGA------------TGATGATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEre2
ATATGCGATTTCGTCTC--GTTTGTTGCTTTCTCTGTCTC-----------------------------TATCTCTCTCTTTCTC----TCCACACTTACATTAA----------TAT--------------------------------------------------------------------ATATA-TAAATCCAACTCTATCT--------------A----TCGCACT-CACTGTGTTT--TGC--C----------------TTTTGTT-----------------------------------GATG-------------A------TGATTTGA---TG----A-----------------------------TAATGATGATG------ATGA------------TGGTTATGATGATGAT------------------------------------------G------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................TTCTC----TCCACACTTACATTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000

Generated: 05/18/2015 at 12:33 AM