ID:

dwi_1040

 Coordinate:

scf2_1100000004515:859229-859379 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2

Flybase annnotation

CDS [Dwil\GK19976-cds]; exon [dwil_GLEANR_2578:1]; intron [Dwil\GK19976-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000004382:394165-394182 +
  2. scf2_1100000004511:6247865-6247882 +
  3. scf2_1100000004513:5114899-5114916 +
  4. scf2_1100000004514:3741523-3741540 +
  5. scf2_1100000004515:449374-449391 +
  6. dwi_1040  scf2_1100000004515:859326-859343 +
  7. scf2_1100000004515:3142094-3142111 +
  8. scf2_1100000004515:3631627-3631644 +
  9. scf2_1100000004515:4362086-4362103 +
  10. scf2_1100000004516:2317161-2317178 +
  11. scf2_1100000004558:2154966-2154983 +
  12. scf2_1100000004585:1669267-1669284 +
  13. scf2_1100000004729:1704457-1704474 +
  14. scf2_1100000004762:4623775-4623792 +
  15. scf2_1100000004762:5985018-5985035 +
  16. scf2_1100000004768:1032691-1032708 +
  17. scf2_1100000004943:15670653-15670670 +
  18. scf2_1100000004909:3433996-3434013 +
  19. scf2_1100000004909:11774870-11774887 +
  20. scf2_1100000004921:1211473-1211490 +
star
  1. scf2_1100000004510:3563671-3563695 +
  2. scf2_1100000004510:3564460-3564484 +
  3. dwi_1040  scf2_1100000004515:859297-859321 +
  4. scf2_1100000004515:3816877-3816901 +
  5. scf2_1100000004516:2327148-2327172 +
  6. scf2_1100000004521:2352061-2352085 +
  7. scf2_1100000004540:1195846-1195870 +
  8. scf2_1100000004822:321131-321155 +
  9. scf2_1100000004943:8218039-8218063 +
  10. scf2_1100000004943:13304911-13304935 +
  11. scf2_1100000004943:14915478-14915502 +
  12. scf2_1100000004902:1491787-1491811 +
  13. scf2_1100000004902:4645475-4645499 +
  14. scf2_1100000004909:3433952-3433976 +
  15. scf2_1100000004909:3539223-3539247 +
  16. scf2_1100000004909:3791879-3791903 +
  17. scf2_1100000004909:11773761-11773785 +
  18. scf2_1100000004921:2064904-2064928 +
  19. scf2_1100000004949:1100966-1100990 +
  20. scf2_1100000004963:1183745-1183769 +
  21. scf2_1100000003625:922-946 +
  22. scf2_1100000004511:1152570-1152594 +
  23. scf2_1100000004511:6250193-6250217 +
  24. dwi_2136  scf2_1100000004768:2558839-2558863 +
  25. scf2_1100000004822:1016291-1016315 +
  26. scf2_1100000004822:1734933-1734957 +
  27. scf2_1100000004902:5798494-5798518 +
  28. scf2_1100000004909:3423314-3423338 +
  29. scf2_1100000004909:9553074-9553098 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGTTTGCAACAGCAACGTGCGGCCATGTTGGCCGCTCGTAATAGCAACAGTCAAATACCGCCACCACCGCCACCCGTTGGAAGTGCTCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAGGCTCAACAACACCATCAACAGCAGCAACATCATGGCACACAGCAGCAACATCATGGTGTACAGCAGCAACAGCCAGACGAGGACC
**********************************************************************************************************************.................((.((.((..........)).)).))....************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
...................................................................................................................................................ACAACAGCAGCAGCAGCA...................................................................................... 18 0 20 0.45 9 9 0 0
....................................................................................................................................ACAGCAGCAGCAACAACA..................................................................................................... 18 0 20 0.35 7 7 0 0
...................................................................................................................................................ACAACAGCAGCAGCAGCAGGC................................................................................... 21 0 5 0.20 1 0 0 1
..............................................................................................................................................................................................................................AGTACAGCAGCAACGGCCA.......... 19 2 6 0.17 1 0 1 0
....................................................................................................................................ACAGCAGCAGCAACAACAACAGC................................................................................................ 23 0 20 0.15 3 3 0 0
............................................................................................................................................AGCAACAACAACAGCAGCA............................................................................................ 19 0 20 0.15 3 3 0 0
...........................................................................................................................ACAACAACAACAGCAGCAGCAAC......................................................................................................... 23 0 20 0.10 2 2 0 0
......................................................................................................................CAGCAACAACAACAACAGCAGCAGC............................................................................................................ 25 0 20 0.10 2 0 1 1
......................................................................................................................................AGCAGCAGCAACAACAACAGCA............................................................................................... 22 0 20 0.10 2 2 0 0
........................................................................................................AGCAGCAGCAGCAACAGCAACAA............................................................................................................................ 23 0 20 0.10 2 2 0 0
.....................................................................................................................................................AACAGCAGCAGCAGCAGGC................................................................................... 19 0 17 0.06 1 1 0 0
...................................................................................................................................................ACAACAGCAGCAGCAGCAGG.................................................................................... 20 0 17 0.06 1 1 0 0
......................................................................................CTCAACAGCAGCAGCAGCAG................................................................................................................................................. 20 0 18 0.06 1 0 1 0
.......................................................................................................CAGCAGCAGCAGCAACAG.................................................................................................................................. 18 0 20 0.05 1 1 0 0
.......................................................................................................................AGCAACAACAACAACAGCAGCAGCAAC......................................................................................................... 27 0 20 0.05 1 1 0 0
......................................................................................................GCAGCAGCAGCAGCAACAGCA................................................................................................................................ 21 0 20 0.05 1 1 0 0
.............................................................................................GCAGCAGCAGCAGCAGCAGCAGC....................................................................................................................................... 23 0 20 0.05 1 0 1 0
......................................................................................................................................AGCAGCAGCAACAACAACAGCAGC............................................................................................. 24 0 20 0.05 1 1 0 0
.....................................................................................................................ACAGCAACAACAACAACAGCAG................................................................................................................ 22 0 20 0.05 1 0 0 1
......................................................................................................................................AGCAGCAGCAACAACAACAGCAGCA............................................................................................ 25 0 20 0.05 1 1 0 0
.....................................................................................................................ACAGCAACAACAACAACAGCAGCA.............................................................................................................. 24 0 20 0.05 1 1 0 0
...................................................................................................................CAACAGCAACAACAACAACAGCAGCAG............................................................................................................. 27 0 20 0.05 1 1 0 0
........................................................................................................................................CAGCAGCAACAACAACAGCAG.............................................................................................. 21 0 20 0.05 1 0 1 0
.................................................................................................................................................CAACAACAGCAGCAGCAGCA...................................................................................... 20 0 20 0.05 1 0 1 0
.......................................................................................................................................GCAGCAGCAACAACAACAGCAGCAG........................................................................................... 25 0 20 0.05 1 1 0 0
............................................................................................AGCAGCAGCAGCAGCAGCAGC.......................................................................................................................................... 21 0 20 0.05 1 0 1 0
.........................................................................................................................CAACAACAACAACAGCAGCAGCAACAAC...................................................................................................... 28 0 20 0.05 1 1 0 0
........................................................................................................................GCAACAACAACAACAGCAGCAG............................................................................................................. 22 0 20 0.05 1 1 0 0
....................................................................................................................AACAGCAACAACAACAACAGCAGCAGC............................................................................................................ 27 0 20 0.05 1 0 1 0
.................................................................................................................................ACAACAGCAGCAGCAACAACAACA.................................................................................................. 24 0 20 0.05 1 1 0 0
..................................................................................................................................................AACAACAGCAGCAGCAGCA...................................................................................... 19 0 20 0.05 1 0 1 0
....................................................................................................................AACAGCAACAACAACAACAGCAGC............................................................................................................... 24 0 20 0.05 1 0 1 0
..............................................................................................................................ACAACAACAGCAGCAGCAACAA....................................................................................................... 22 0 20 0.05 1 1 0 0
.............................................................................................................................................GCAACAACAACAGCAGCAGCA......................................................................................... 21 0 20 0.05 1 1 0 0
............................................................................................................................................AGCAACAACAACAGCAGCAGCAGCA...................................................................................... 25 0 20 0.05 1 1 0 0
............................................................................................................................CAACAACAACAGCAGCAGCAACAA....................................................................................................... 24 0 20 0.05 1 1 0 0

Anti-sense strand reads

TGCAAACGTTGTCGTTGCACGCCGGTACAACCGGCGAGCATTATCGTTGTCAGTTTATGGCGGTGGTGGCGGTGGGCAACCTTCACGAGTTGTCGTCGTCGTCGTCGTCGTCGTCGTTGTCGTTGTTGTTGTTGTCGTCGTCGTTGTTGTTGTCGTCGTCGTCGTCCGAGTTGTTGTGGTAGTTGTCGTCGTTGTAGTACCGTGTGTCGTCGTTGTAGTACCACATGTCGTCGTTGTCGGTCTGCTCCTGG
**************************************************************************************.................((.((.((..........)).)).))....********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
............................................................CGGTGGAGGCGGTGGGCC............................................................................................................................................................................. 18 2 9 0.22 2 2 0
..........................................................................................................GTCGTCGTCGTTGTCGTTGTTGT.......................................................................................................................... 23 0 20 0.15 3 3 0
......................................................TTATGCCGGTGGTGGGGG................................................................................................................................................................................... 18 2 9 0.11 1 1 0
..CAAACCTGGTCGTTGCGCG...................................................................................................................................................................................................................................... 19 3 11 0.09 1 1 0
..........................................................................................................GTCGTCGTCGTTGTCGTTGTTGTT......................................................................................................................... 24 0 20 0.05 1 1 0
........................................................................................................................CGTTGTTGTTGTTGTCGTCGTCG............................................................................................................ 23 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004515:859179-859429 + dwi_1040 ACGTT----TGC--AACAGCAACGTGCGGCCATGTTGGCCGC-TCG------------------------------------------------------TAATAG---CA---AC---AG-----------------------------------TCAAATACCGCCACCACCGCCACCCGT-----TGGAAGTGC----TCAACAGCAGCAGC----------------AGCAGCAGCAGC---AGCAACAGCAACAACAACAAC-----------------------------AGCAGCAGCAA---CA---ACAACAGCAG---------------------------------------------CA---GCAGCAGGCTCAACAACAC---CATCAACAGC---AGCAACATCAT-GGCACACAGCAGCAAC---A---T---CATGGT---G---TACAGCAGCA---------------------ACAGCCAGACG----------A----------GGACC
droVir3 scaffold_13049:6096667-6096892 + GTGGC----TGCTGAAAAGCAACACGCGGCGGCAGTAGCCGC-T-GCT----------------------------------------------------CAACAGCAACACAAGA---CGCCCCAGCAGCAGCAGCAA---------------------------------------------------------------CAGCAGCAGCAAC----------------AACAACAACAAC---AGCAACAGCAGCAACAACAAC---AACAACAAC-----------------AGCAT---------CA---ACAAC---AA------CAACAA------------------------------------------CAGCAGCA---GCAA---C---------AACAACAGCAACAAC-------AGCAGCAAC---A---A---C----AGCAA--CAACAACAGCA---------------------GCAGCAGCAGC----------A----------GCAAC
droMoj3 scaffold_6328:450788-451014 - GCGTC----TGC--AGCAGCAGCGTGCCGCAATGTTGGCGGC-GCG------------------------------------------------------CAACGG---CAATGGCAACAA-----------------------------------TCAAGTACCGCCACCGCCGCCGCCTGT-----GGGCAGCGC----TCAGCAGCAGCAGC----------------AGCAGCAGCAGC---AGCAACAGCAGCAGCA---GC------------------------AGCAA--------------CA---A---C---AG------------------------------------------CAGCA---ACAACAGCAGCAGCAACAA---C------------AACAGCATCAT-GCCACATCCCAGCAGC------------------------AGCAGCAGCA---------------------GCAGGCCGATG----------A----------GGACC
droGri2 scaffold_15110:6617980-6618203 - dgr_300 GCGGC----TGC--AGCAGCGGCAG-CAGCTGCT-----------GCT---------CAGCAACAACAACAACAGCAGCAGCAG----------------CAACAA---CACAAGA---CG---------------------------------------------CC-----------CCAG-------------------CAGCAACAGCAGC-------------------AGCAACAACAACAGCAGCA---ACAACAGCAGC-----------------------------AGCAG---------CA---GCAAC---AA---------------------------------------CAG---CAACAACAACAGCAACAACA---ACAACA------------GCA---GCAGC-------------AACAACA---ACAACAG---------CAGCAGCAGCA---------------------ACAACAACAACAACAGCCTGGA----------GGCCC
dp5 XR_group6:12701973-12702214 + GCACC----AGC--AACAGCAGCAA-CAGCAGCATCAGCAGC-----------------------------------------------------------AGAAG---CA---------G------------------CAGCAGCAACAGCAGCAACAG---------------------------------------------CAG-------CAGCAGCAGAAGCAGCAGCAGCAACAGC---A---------GC------------AACAGCAGCAGCAACAGC--------AGCAG---------CA---GCAAC---AG------CAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAG---CAGCAACAGCAGCAGCAACA---GCAGCA------------GCA----------------GCATCAGC---AACATCAGCAG---------CAAAAGCATCA---------------------GCAACAGCAGC----------A----------GCAGC
droPer2 scaffold_0:8271562-8271808 - TCGTC----A------CGGCAACCCGCAACAGCAGCAGC--AAATG--CAACAGCAGCAGCAAATGCAGCAACAGCAGCAACAGCAACAACAGCAG-------------------------------------------------------------CAAAT------------------------------------------------GCAGC-------------------AGCAACAGCAACAGCA------GC------------AAATGCAGCAACAGCAGC--------AGCAG---------CAGCAACAGC---AGCAACAA------------CAGCAACAACAGCAACAACAGCAG---CAACAACAGCCGCAACAACA---GCAACA------------ACA----------------GCAGCAAC---A----------------G--------------CG------CTCACAGCATCAGCAAACGCAGA----------C--------GAACAGC
droAna3 scaffold_13248:2270586-2270842 - dan_4064 ACAATAAATTGC--AGCAGAAACAGCAGGCAGAGCAGGAGCGACGG--CAGCAGCAGCAGCCACAGCAGCAACAGCAGCAGCAGCAACAGCAACAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCAACAGC---------------AGCAGCAACAGCAGCAGCAGCCACAGCAGCAG--------------CA---ACAGC---AGCAACGA------------CAGCAGCAGCAGCAACGTCAGCAG---CAGCAGCAACGACAAC-------------------------------------------------------A---A---CAGCAAGCAG---TGCAGCAACAGCATCATGTGGAGCA------GC-AACAGACG----------G----------GGAGC
droBip1 scf7180000396728:856153-856404 - CCAGC----AGC--AACAGCAAGCGGCTGCTGTCCAGGCAGCTCAC------------------------------------------------------CAACAA---CAGCAGC---------------------AACAGCTCCAACAGCAGCATCAGTTGCTGCAGCTGTC------CATTCAACAGGCGGCGCACCATCAGCAGCAGGAGC-------------------AGCATCGCCAACAGCAGCA---ACAACAGCAGC-----------------------------AGCAA---------CA---ACAGC---AG------------------------------------------CAGCA---CCAACAGCAGCAGCAGCAC---C------------ATCAGCAACAGC-------------AAGGCCA---TCCACAGGCACCAC---CGCCGCAGCA---------------------GCAACAGCAG----------------------CCACC
droKik1 scf7180000302685:196401-196637 + GCATC----TAC--AGCAGCAGCAG-CAACATCACCAGCAGC-----------------------------------------------------------AACAA---CA---------------------------ACAGCATCTACAGCAGCAACAG---------------------------------------------CAG-------CAGCTGCAGCAACATCTACAGCAGCAACAGCAGC---------------AGCATCATCTACAGC-----------------AGCAG---------CA---GCATC---TA------CAGCAACAGCAGCATCTACAGCAGCAGCAGCAGCAG---CAGCATCTACAGCAGCAGCA---GCAGCA------------GCA----------------GCAGCATC---A------------T---C---T------------------CCAGCAGCAGCAGCAACAACAGC---------AT----------TACCC
droFic1 scf7180000451478:434-692 + ACCTT----TTT--CGCCAAGATGTCCGGACGTGCTAACCAC-CGC--CAGCAGCATCAGCCGCAGCAGCATCAGCAGCAGCCGCAACAGCATCAGCAGC-------------------A---------------------------------GCCGCAG---------------------------------------------CAG-------CATCAGCAGC---------AGCCGCAGC------------------------------AGCATCAGCAGCAGCCGCAGCAG--------------CA---ACAGC---AGCAGCCG------------CAGCAGTCGCAGCAGCATCAACAG---CAGCCGAAGCAACAACAAAA---GCAGCC------------GCA----------------GCAGCAAC---AACGGCGGCAG---------CGACAGCAGCA---------------------GCAGCCGCAGC----------A----------GCAGC
droEle1 scf7180000490214:539543-539766 - GCGCC----TGC--AACAGCAACGTGCCGCGATGCTGGCCGC-CCG------------------------------------------------------AAATAC---CACAAGCGGTGG-----------------------------------TCAGATACCACCTCCGCCCCCGCCCGT-----CGGCAGTGC----CCAGCAGCAGCAAC----------------AGCAGCAACAAC---AGCAGCAACAACAACA-----------------------------------GCAGCAACAA---CA---ACAAC------------------------------------------------------------AGCAGCAGCAGCAA---C------------AGCAACACCAGC-------------AACCTCA---T---CATGGAGCAA---TGCAGCAGCA---------------------GCAATCGGAGG----------A----------TGACC
droRho1 scf7180000779189:202033-202265 - GCGCC----TGC--AACAACAGCGCGCCGCGATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACCAGC---GG-----------------------------------TCAGATACCGCCCCCGCCCCCGCCCGT-----CGGCAGTGC----CCAGCAGCAGCAGC----------------AACAACAACAGC---AACAGCAGCAGCAGCAGCAAC-----------------------------AGCAA---------CA---ACAAC---AG------------------------------------------CAACA---ACAGCAGCAACAGCAGCCA---C------------AGCCACACCAGC-------------AACCTCA---T---CATGAAGCAC---TGCAGCAGCA---------------------GCAATCGGAGG----------A----------GGACC
droBia1 scf7180000302126:3767461-3767696 + GCGGC----TGC--AGCAGCAGCGCGCCGCCATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACGGGC---GG-----------------------------------TCAGATACCGCCCCCGCCCCCGCCCGT-----CGGCACTGC----CCAGCAGCAGCAGC----------------AGCAGCAACAAC---AGCAGCAGCAGCAGCAACAAC-----------------------------AGCAG---------CA---ACAAC---AG------------------------------------------CAGCA---GCAACAGCAGCAGCAGCAA---C------------AGTCGCACCAGC-------------AACCTCA---T---CATGGAGCTGCACTGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACC
droTak1 scf7180000415394:667318-667535 + GCGCC----TGC--AGCAGCAGCGTGCCGCGATGTTGGCCGC-CCG------------------------------------------------------CAACAC---CACAAGC---GG-----------------------------------TCAGATTCCGCCCCCGCCCCCGCCCGT-----CGGCAGTGC----CCAGCAGCAGCAGC----------------AGCAACAACAAC---AGCAGCAGCAGCAGCAACAAC-----------------------------AG---------------------C---AG------------------------------------------CAGCA---ACAACAGCAACA------G---C------------AGTCACACCAGC-------------AACCTCA---T---CACGGAGCAA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACC
droEug1 scf7180000409901:146201-146442 + GCGTT----TGC--AACAACAGCGTGCCGCAATGTTGGCTGC-CCG------------------------------------------------------CAATAC---CACAGGC---GG-----------------------------------TCAGATACCGCCTCCGCCTCCACCCGT-----CGGCAGTGC----CCAGCAGCAGCAGC----------------AACAACAACAAC---AGCAACAGCAGCAACAACAAC-----------------------------AACAGCAGCAACAGCA---ACAAC---AG------------------------------------------CAGCA---GCAGCAGCAACAGCAACAA---C------------AGCCACATCAGC-------------AACCTCA---T---CATGGAGCTA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACC
dm3 chrX:10806694-10806902 + GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAAGC---GG-----------------------------------TCAGATACCGCCACCACCCCCGCCCGT-----TGGCACTGC----CCAGCAGCAGCAAC----------------AGCAACAGCAAC---AGCAGCAGCAGCAACA---AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------AGTCGCATCAGC-------------AGCCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACC
droSim2 x:10265048-10265265 + GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAGGC---GG-----------------------------------TCAGATACCGCCCCCACCCCCGCCCGT-----TGGCACTGC----TCAGCAACAGCAGC----------------AGCAACAGCAAC---AGCAGCAGCAGCAGCA---AC---------------------AGCAGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGCAA---C------------AGTCGCATCAGC-------------AGCCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACC
droSec2 scaffold_15:1510064-1510278 + GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAAGC---GG-----------------------------------TCAGATACCGCCCCCACCCCCGCCCGT-----TGGCACTGC----TCAGCAACAGCAGC----------------AGCAACAGCAAC---AGCAGCAGCAGCAACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGCAA---C------------AGTCGCATCAGC-------------AGCCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGAAC
droYak3 X:11312575-11312807 - dya_1393 GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAGGC---GG-----------------------------------TCAGATACCGCCCCCACCCCCGCCCGT-----TGGCACTGC----TCAGCAGCAGCAGC----------------AGCAGCAACAAC---AGCAGCAGCAACAGCAGCAGC-----------------------------AGCAG---------CA---ACAGC---AG------------------------------------------CAGCA---ACAGCAGCAGCAGCAGCAA---C------------AGTCGCATCAGC-------------AACCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACC
droEre2 scaffold_4690:1183966-1184220 - CCAGT----CGC--ATCAGCAGCAG-CAGCCGCACCAGTCGC-----------------------------------------------------------ATCAG---CA---------G---------CAGCAGCAGCTGCTTCAGCAGCAGCAAC---------------------------------------------TTCAGCAGCAGC----------------AGCAGCAACTTC---AGC---------------------AGCAGCATCAGCAGCAGC--------TGCAG---------CA---TCAAC---AG------CAGCTGCAACATCAACAGCAGCTGCAGCATCAACAG---CAGCTGCAGCATCAACACCA---ACTGCA------------GCA----------------GCAGCAGC---ATCAGCAGCAG---------CTGCAGCATCA---------------------GCATCACCAACAGCAGC---AGTACGCAGA--CG--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACGTT----TGC--AACAGCAACGTGCGGCCATGTTGGCCGC-TCG------------------------------------------------------TAATAG---CA---AC---AG-----------------------------------TCAAATACCGCCACCACCGCCACCCGT-----TGGAAGTGC----TCAACAGCAGCAGC----------------AGCAGCAGCAGC---AGCAACAGCAACAACAACAAC-----------------------------AGCAGCAGCAA---CA---ACAACAGCAG---------------------------------------------CA---GCAGCAGGCTCAACAACAC---CATCAACAGC---AGCAACATCAT-GGCACACAGCAGCAAC---A---T---CATGGT---G---TACAGCAGCA---------------------ACAGCCAGACG----------A----------GGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................ACAACAGCAG---------------------------------------------CA---GCAGCA.....................................................................................................................................................18200.45900090
.........................................................................................................................................................................................................................................................................AC-----------------------------AGCAGCAGCAA---CA---ACA....................................................................................................................................................................................................................18200.35700070
...........................................................................................................................................................................................................................................................................................................................ACAACAGCAG---------------------------------------------CA---GCAGCAGGC..................................................................................................................................................2150.20100001
.........................................................................................................................................................................................................................................................................AC-----------------------------AGCAGCAGCAA---CA---ACAACAGC...............................................................................................................................................................................................................23200.15300030
..............................................................................................................................................................................................................................................................................................................AGCAA---CA---ACAACAGCAG---------------------------------------------CA---...........................................................................................................................................................19200.15300030
................................................................................................................................................................................................................................................................ACAACAACAAC-----------------------------AGCAGCAGCAA---C...........................................................................................................................................................................................................................23200.10200020
...........................................................................................................................................................................................................................................................CAGCAACAACAACAAC-----------------------------AGCAGCAGC.................................................................................................................................................................................................................................25200.10201001
........................................................................................................................................................................................................................................................................................................AGCAGCAGCAA---CA---ACAACAGCA..............................................................................................................................................................................................................22200.10200020
..........................................................................................................................................................................................................................................AGCAGCAGC---AGCAACAGCAACAA..............................................................................................................................................................................................................................................................................23200.10200020
.............................................................................................................................................................................................................................................................................................................................AACAGCAG---------------------------------------------CA---GCAGCAGGC..................................................................................................................................................19170.06100010
...........................................................................................................................................................................................................................................................................................................................ACAACAGCAG---------------------------------------------CA---GCAGCAGG...................................................................................................................................................20170.06100010
....................................................................................................................................................................................................C----TCAACAGCAGCAGC----------------AGCAG......................................................................................................................................................................................................................................................................................................20180.06101000
.........................................................................................................................................................................................................................................CAGCAGCAGC---AGCAACAG....................................................................................................................................................................................................................................................................................18200.05100010
............................................................................................................................................................................................................................................................AGCAACAACAACAAC-----------------------------AGCAGCAGCAA---C...........................................................................................................................................................................................................................27200.05100010
........................................................................................................................................................................................................................................GCAGCAGCAGC---AGCAACAGCA..................................................................................................................................................................................................................................................................................21200.05100010
...............................................................................................................................................................................................................GCAGCAGC----------------AGCAGCAGCAGC---AGC.........................................................................................................................................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................................................................................AGCAGCAGCAA---CA---ACAACAGCAG---------------------------------------------C...............................................................................................................................................................24200.05100010
..........................................................................................................................................................................................................................................................ACAGCAACAACAACAAC-----------------------------AGCAG.....................................................................................................................................................................................................................................22200.05100001
........................................................................................................................................................................................................................................................................................................AGCAGCAGCAA---CA---ACAACAGCAG---------------------------------------------CA---...........................................................................................................................................................25200.05100010
..........................................................................................................................................................................................................................................................ACAGCAACAACAACAAC-----------------------------AGCAGCA...................................................................................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................CAACAGCAACAACAACAAC-----------------------------AGCAGCAG..................................................................................................................................................................................................................................27200.05100010
..........................................................................................................................................................................................................................................................................................................CAGCAGCAA---CA---ACAACAGCAG---------------------------------------------................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................CA---ACAACAGCAG---------------------------------------------CA---GCAGCA.....................................................................................................................................................20200.05101000
.........................................................................................................................................................................................................................................................................................................GCAGCAGCAA---CA---ACAACAGCAG---------------------------------------------CA---G..........................................................................................................................................................25200.05100010
..............................................................................................................................................................................................................AGCAGCAGC----------------AGCAGCAGCAGC---............................................................................................................................................................................................................................................................................................21200.05101000
..............................................................................................................................................................................................................................................................CAACAACAACAAC-----------------------------AGCAGCAGCAA---CA---AC.....................................................................................................................................................................................................................28200.05100010
.............................................................................................................................................................................................................................................................GCAACAACAACAAC-----------------------------AGCAGCAG..................................................................................................................................................................................................................................22200.05100010
.........................................................................................................................................................................................................................................................AACAGCAACAACAACAAC-----------------------------AGCAGCAGC.................................................................................................................................................................................................................................27200.05101000
......................................................................................................................................................................................................................................................................ACAAC-----------------------------AGCAGCAGCAA---CA---ACAACA.................................................................................................................................................................................................................24200.05100010
.......................................................................................................................................................................................................................................................................................................................A---ACAACAGCAG---------------------------------------------CA---GCAGCA.....................................................................................................................................................19200.05101000
.........................................................................................................................................................................................................................................................AACAGCAACAACAACAAC-----------------------------AGCAGC....................................................................................................................................................................................................................................24200.05101000
...................................................................................................................................................................................................................................................................ACAACAAC-----------------------------AGCAGCAGCAA---CA---A......................................................................................................................................................................................................................22200.05100010
...............................................................................................................................................................................................................................................................................................................GCAA---CA---ACAACAGCAG---------------------------------------------CA---GCA........................................................................................................................................................21200.05100010
..............................................................................................................................................................................................................................................................................................................AGCAA---CA---ACAACAGCAG---------------------------------------------CA---GCAGCA.....................................................................................................................................................25200.05100010
.................................................................................................................................................................................................................................................................CAACAACAAC-----------------------------AGCAGCAGCAA---CA---A......................................................................................................................................................................................................................24200.05100010
droVir3
GTGGC----TGCTGAAAAGCAACACGCGGCGGCAGTAGCCGC-T-GCT----------------------------------------------------CAACAGCAACACAAGA---CGCCCCAGCAGCAGCAGCAA---------------------------------------------------------------CAGCAGCAGCAAC----------------AACAACAACAAC---AGCAACAGCAGCAACAACAAC---AACAACAAC-----------------AGCAT---------CA---ACAAC---AA------CAACAA------------------------------------------CAGCAGCA---GCAA---C---------AACAACAGCAACAAC-------AGCAGCAAC---A---A---C----AGCAA--CAACAACAGCA---------------------GCAGCAGCAGC----------A----------GCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............TGAAAAGCAACACGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................TAGCCGC-T-GCT----------------------------------------------------CAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................CAGTAGCCGC-T-GCT----------------------------------------------------CAACAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................AGCAACACAAGA---CGCCCCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ACAAC---AACAACAAC-----------------AGCAT---------CA---ACAAC---A..............................................................................................................................................................................................................2740.251000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACAACAAC---AACAACAAC-----------------AGCAT---------CA---ACA....................................................................................................................................................................................................................2740.251000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................ACAAC-----------------AGCAT---------CA---ACAAC---AA------C......................................................................................................................................................................................................2050.201000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCAT---------CA---ACAAC---AA------CAACAA------------------------------------------CAGCA..................................................................................................................................................2450.201001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGCAT---------CA---ACAAC---AA------CAACAA------------------------------------------CAGC...................................................................................................................................................2460.171001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ACAAC---AACAACAAC-----------------AGCAT---------CA---ACA....................................................................................................................................................................................................................2470.141000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CAAC-----------------AGCAT---------CA---ACAAC---AA------CAA....................................................................................................................................................................................................2170.141000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................T---------CA---ACAAC---AA------CAACAA------------------------------------------CAGCAGCA---GCA.........................................................................................................................................2780.131000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGCAACAGCAGCAACAACA.........................................................................................................................................................................................................................................................................19200.102000000000000000000000000000002000000000000000000000000000000000
...............................................................................................................................................................................................................GCAGCAAC----------------AACAACAACAAC---AGC.........................................................................................................................................................................................................................................................................................23200.102100000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAACAACAGCA---------------------GCAGCAGCA............................22200.102000000000000000001000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---A---C----AGCAA--CAACAACAGCA---------------------.....................................19200.102001000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--CAACAACAGCA---------------------GCAGCAGCAGC----------................26200.102001000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................C---AA------CAACAA------------------------------------------CAGCAGCA---GC..........................................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
....................................................................................................................................................................................................................AAC----------------AACAACAACAAC---AGCAACAGCAGC................................................................................................................................................................................................................................................................................27200.102001000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AA------------------------------------------CAGCAGCA---GCAA---C---------AACAACAGCA.................................................................................................................25200.102000000000000000000000000000000001000100000000000000000000000000
................................................................................................................................................................................................................................................AAC---AGCAACAGCAGCAACA............................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--CAACAACAGCA---------------------GCAGC................................21200.102001000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAAC-------AGCAGCAAC---.........................................................................................20200.102000000000000000001000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................AGCAGCAACAACAAC---AACAACAAC-----------------AGC.......................................................................................................................................................................................................................................27200.102000200000000000000000000000000000000000000000000000000000000000
............................................................................................................................CAGCAGCAGCAGCAA---------------------------------------------------------------CAGC....................................................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC-------AGCAGCAAC---A---.....................................................................................19200.102001000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................AGCAA---------------------------------------------------------------CAGCAGCAGCAAC----------------A..........................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000010000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---A---A---C----AGCAA--CAAC.................................................................21200.102000000000000000000010000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................AACAACAAC---AGCAACAGCAGCAACAACAA........................................................................................................................................................................................................................................................................29140.071001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CAAC---AACAACAAC-----------------AGCAT---------CA---AC.....................................................................................................................................................................................................................22140.071000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AAC---AACAACAAC-----------------AGCAT---------CA---AC.....................................................................................................................................................................................................................21150.071000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CAT---------CA---ACAAC---AA------CAACAA------------------------------------------CAGCA..................................................................................................................................................23180.061000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AA---C---------AACAACAGCAACAAC-------AGCAGCAAC---.........................................................................................27180.061000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AC----------------AACAACAACAAC---AGCAACAGC...................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--CAACAACAGCA---------------------GC...................................18200.051000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................C---AGCAACAGCAGCAACAACAAC---....................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................AGCAGCAGCAAC----------------AACAACAACAAC---AGCA........................................................................................................................................................................................................................................................................................28200.051000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AGCAGCAGCAAC----------------AACAACA....................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAA---C---------AACAACAGCAACAAC-------AGCAG................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAA---------------------------------------------------------------CAGCAGCAGCAAC----------------AACA.......................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------------GCAGCAGCAGC----------A----------.....20200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA---------------------GCAGCAGCAGC----------A----------GCAAC23200.051000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................A---------------------------------------------------------------CAGCAGCAGCAAC----------------AACA.......................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CAACAACAGCA---------------------GCAGCAGCAGC----------................23200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CAACAACAAC---AGCAACAGCAG.................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GCAA---C---------AACAACAGC..................................................................................................................19200.051000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AACAACAACAAC---AGCAACAGCAGCA...............................................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................CAGCAGCAGCAAC----------------AACAACA....................................................................................................................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----AGCAA--CAACAACAGCA---------------------GC...................................19200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAACAACAGCA---------------------GCAGCAGCAGC----------A----------GC...27200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---A---A---C----AGCAA--CAACAACAGCA---------------------GCA..................................25200.051000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------------GCAGCAGCAGC----------A----------G....21200.051000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................CAACAAC---AGCAACAGCAGCAAC.............................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................AGCAGCAAC----------------AACAACAACAAC---AGC.........................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CAACAACAAC---AGCAACAGCAGC................................................................................................................................................................................................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AC---AA------CAACAA------------------------------------------CAGCAGCA---GCAA---C---------A..........................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAA---C---------AACAACAGCAA................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................AGCAGCAAC----------------AACAACAACAAC---............................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-------AGCAGCAAC---A---A---C----AGCAA--.....................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CAGCAGCAA---------------------------------------------------------------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--CAACAACAGCA---------------------GCAGCAGC.............................24200.051000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................A---C----AGCAA--CAACAACAGCA---------------------GCAGCAGCA............................27200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAGCAA---------------------------------------------------------------CAGCAGCAGCAAC----------------A..........................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---A---A---C----AGCAA--CAA..................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AACAACAAC---AGCAACAGCAGC................................................................................................................................................................................................................................................................................21200.051000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................AGCAA---------------------------------------------------------------CAGCAGCAGCAAC----------------AACA.......................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--CAACAACAGCA---------------------GCAGCA...............................21200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................A------CAACAA------------------------------------------CAGCAGCA---GCAA---C---------...........................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---------------------GCAGCAGC.............................18200.051000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACAACAACAAC---AGCAACAGCAGCAACA............................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AAC---AA------CAACAA------------------------------------------CAGCAGCA---............................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CAA------------------------------------------CAGCAGCA---GCAA---C---------AACAACAGC..................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................ACAACAAC---AGCAACAGCAGCAAC.............................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA---------------------GCAGCAGCAGC----------A----------GCAAC28200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................CAGCAGCAGCAGCAA---------------------------------------------------------------CAGCA...................................................................................................................................................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAAC---AGCAACAGCAGCAACAAC..........................................................................................................................................................................................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AGCAGCAA---------------------------------------------------------------CAGCAGCAGCAAC----------------A..........................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAACAGCAGCAACAACAAC---AACAA...............................................................................................................................................................................................................................................................24200.051000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------------GCAGCAGCAGC----------A----------GCAAC22200.051000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------AGCAGCAAC---A---A---C----AGCAA--CA...................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ACAA------------------------------------------CAGCAGCA---GCAA---C---------AACAA......................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CAACAA------------------------------------------CAGCAGCA---GCAA---C---------...........................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ACAA------------------------------------------CAGCAGCA---GCAA---C---------A..........................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................ACAACAAC---AACAACAAC-----------------AGCAT---------............................................................................................................................................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................C---AGCAACAGCAGCAACAACAA........................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................CAA---------------------------------------------------------------CAGCAGCAGCAAC----------------AACAACA....................................................................................................................................................................................................................................................................................................23200.051000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------------------GCAGCAGCAGC----------A----------GCA..22200.051000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................C---AA------CAACAA------------------------------------------CAGCAGCA---GCA.........................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAAC---AGCAACAGCAGCAACA............................................................................................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAAC-------AGCAGCAAC---A---A---C----............................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----AGCAA--CAACAACAGCA---------------------GCAGCA...............................23200.051000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AACAACAAC---AGCAACAGC...................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ACAACAAC---AGCAACAGCAGCA...............................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AA------CAACAA------------------------------------------CAGCAGCA---GCAA---.....................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAA---C---------AACAACAGCAACAAC-------AGCAGCA..............................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AC---AGCAACAGCAGCAACAACAAC---AACA................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................A------------------------------------------CAGCAGCA---GCAA---C---------AACAA......................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AACAACAACAAC---AGCAAC......................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAA---C---------AACAACAGCAACAAC-------.....................................................................................................27200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................A---ACAAC---AA------CAACAA------------------------------------------CAGCAG.................................................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAAC-------AGCAGCAA.............................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAAC-------AGCAGCA..............................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................AACAACAAC---AGCAACAGCAGCAAC.............................................................................................................................................................................................................................................................................24200.051000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---A---A---C----AGCAA--CA...................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAC-------AGCAGCAAC---A---A---C----............................................................................20200.051000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................C----------------AACAACAACAAC---AGCAACAGCAGC................................................................................................................................................................................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................A---ACAAC---AA------CAACAA------------------------------------------CAGCAGCA---GC..........................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---------------------GCAGCAGCAGC----------................21200.051000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC-------AGCAGCAAC---A---A---C----AGCA........................................................................25200.051000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---A---A---C----AGCAA--CAACAACA.............................................................21200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................CAGCAGCAA---------------------------------------------------------------CAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GCAACAGCAGCAACAACAAC---....................................................................................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
GCGTC----TGC--AGCAGCAGCGTGCCGCAATGTTGGCGGC-GCG------------------------------------------------------CAACGG---CAATGGCAACAA-----------------------------------TCAAGTACCGCCACCGCCGCCGCCTGT-----GGGCAGCGC----TCAGCAGCAGCAGC----------------AGCAGCAGCAGC---AGCAACAGCAGCAGCA---GC------------------------AGCAA--------------CA---A---C---AG------------------------------------------CAGCA---ACAACAGCAGCAGCAACAA---C------------AACAGCATCAT-GCCACATCCCAGCAGC------------------------AGCAGCAGCA---------------------GCAGGCCGATG----------A----------GGACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................AA---C------------AACAGCATCAT-GCCACAT.....................................................................................................2111.001100000
..................................................................................................................................................................................................................GCAGC----------------AGCAGCAGCAGC---AGCA........................................................................................................................................................................................................................................................................................21200.306000060
..........................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAA---C------------AAC.....................................................................................................................20200.051000001
........................................................................................................................................................................................................................................GCAGCAGCAGC---AGCAACAGCA..................................................................................................................................................................................................................................................................................21200.051000010
...............................................................................................................................................................................................................................................................AGCAGCA---GC------------------------AGCAA--------------CA---A---C---AG------------------------------------------CAGCA---AC.........................................................................................................................................................27200.051100000
......................................................................................................................................................................................................................................................AGCAACAGCAGCAGCA---GC------------------------AGC............................................................................................................................................................................................................................................21200.051001000
............................................................................................................................................................................................................................................................AGCAGCAGCA---GC------------------------AGCAA--------------CA---A---C---AG------------------------------------------CA.................................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................................................AGCAGCAGCA---GC------------------------AGCAA--------------CA---A---C---AG------------------------------------------CAGCA---...........................................................................................................................................................28200.051010000
droGri2
GCGGC----TGC--AGCAGCGGCAG-CAGCTGCT-----------GCT---------CAGCAACAACAACAACAGCAGCAGCAG----------------CAACAA---CACAAGA---CG---------------------------------------------CC-----------CCAG-------------------CAGCAACAGCAGC-------------------AGCAACAACAACAGCAGCA---ACAACAGCAGC-----------------------------AGCAG---------CA---GCAAC---AA---------------------------------------CAG---CAACAACAACAGCAACAACA---ACAACA------------GCA---GCAGC-------------AACAACA---ACAACAG---------CAGCAGCAGCA---------------------ACAACAACAACAACAGCCTGGA----------GGCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................GCAG----------------CAACAA---CACAAGA---CG---------------------------------------------CC-----------...............................................................................................................................................................................................................................................................................................................................................................2111.00110
................................................................AACAACAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10220
...................................................................................................................................................................................................................................................................ACAGCAGC-----------------------------AGCAG---------CA---GCAAC---AA---------------------------------------CA....................................................................................................................................................................24200.10220
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAACAG---------CAGCAGCAGCA---------------------ACAACA...............................27200.05110
..................................................................................................................................................................................................................GCAGC-------------------AGCAACAACAACAGCAGCA---..................................................................................................................................................................................................................................................................................24200.05110
.................................................................ACAACAACAGCAGCAGCAG----------------CAACAA---CA...................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05110
....................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAACA---ACA......................................................................................................................................21200.05101
dp5
GCACC----AGC--AACAGCAGCAA-CAGCAGCATCAGCAGC-----------------------------------------------------------AGAAG---CA---------G------------------CAGCAGCAACAGCAGCAACAG---------------------------------------------CAG-------CAGCAGCAGAAGCAGCAGCAGCAACAGC---A---------GC------------AACAGCAGCAGCAACAGC--------AGCAG---------CA---GCAAC---AG------CAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAG---CAGCAACAGCAGCAGCAACA---GCAGCA------------GCA----------------GCATCAGC---AACATCAGCAG---------CAAAAGCATCA---------------------GCAACAGCAGC----------A----------GCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................CAGCAGCATCAGCAGC-----------------------------------------------------------AGAAG---C....................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
................................CATCAGCAGC-----------------------------------------------------------AGAAG---CA---------G------------------C......................................................................................................................................................................................................................................................................................................................................................................................................1940.2510100000000
...............ACAGCAGCAA-CAGCAGCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310001000000
............................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGC.................................................................................................................................................................................21200.1020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAACA---GCAGCA------------GCA----------------GCATCAGC---A........................................................................................23120.0810100000000
.................................................................................................................................................................................................................................................GC---A---------GC------------AACAGCAGCAGCAACAGC--------..........................................................................................................................................................................................................................................23200.0510010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA---------------------GCAACAGCAGC----------A----------GT...21200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG---CAGCAACAGC......................................................................................................................................................23200.0510010000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACA---GCAGCA------------.......................................................................................................................26200.0510001000000
........................................................................................................................G------------------CAGCAGCAACAGCAGCAACAG---------------------------------------------C....................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.....................................................................................................................................................................................................................................GCAGCAGCAACAGC---A---------GC------------AAC.................................................................................................................................................................................................................................................................20200.0510100000000
.......................................................................................................................................................................................................................................................................................................................A---GCAAC---AG------CAACAACAGCAGC..........................................................................................................................................................................................21200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACAGCAG---CAGC............................................................................................................................................................27200.0510000000001
......................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACA---GCAGCA------------.......................................................................................................................22200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---GCAGCA------------GCA----------------GCA.................................................................................................21200.0510000100000
.................................................................................................................................................................................................................................................................................................................................................................................................CAACA---GCAGCA------------GCA----------------GCATCA..............................................................................................20200.0510000001000
...........................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAG---CA..............................................................................................................................................................22200.0510100000000
................................................................................................................................................................................................................................................AGC---A---------GC------------AACAGCAGCAGCAACAGC--------..........................................................................................................................................................................................................................................24200.0510010000000
...........................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAACAGCAG...............................................................................................................................................................................24200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACAGCAG---C...............................................................................................................................................................24200.0510000000001
......................................................................................................................................................................................................................................................A---------GC------------AACAGCAGCAGCAACAGC--------AGC.......................................................................................................................................................................................................................................24200.0510000000001
..................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG---CAGCAACAGCAGCA..................................................................................................................................................27200.0510100000000
..............................................................................................................................................................................................................................................................................................................................AC---AG------CAACAACAGCAGCAGCA......................................................................................................................................................................................21200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACAGC.....................................................................................................................................................................23200.0510010000000
.....................................................................................................................................................................................................................................GCAGCAGCAACAGC---A---------GC------------AACAGC..............................................................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................................................CAGCAGCAACAGCAGCAACAG---------------------------------------------CA...................................................................................................................................................................................................................................................................................................................................23200.0510100000000
........................................................................................................................G------------------CAGCAGCAACAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
............................................................................................................................................................................................................................................................................................................G---------CA---GCAAC---AG------CAACAACAGCAGCA.........................................................................................................................................................................................24200.0510000100000
................................................................................................................................................................................................................................................................GC------------AACAGCAGCAGCAACAGC--------AGCAG---------C...........................................................................................................................................................................................................................26200.0510000000001
............................................................................................................................................................................................................................................................................................CAGC--------AGCAG---------CA---GCAAC---AG------C......................................................................................................................................................................................................19200.0510000100000
....................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG---CAGCAACAGCAGCAGC................................................................................................................................................27200.0510000000001
......................................................................................................................................................................................................................................CAGCAGCAACAGC---A---------GC------------AACA................................................................................................................................................................................................................................................................20200.0510000010000
......................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACA.......................................................................................................................................................................21200.0510000100000
..............................................................................................................................................................................................................................................................................................................................................................................G---CAGCAACAGCAGCAGCAACA---GC.......................................................................................................................................23200.0510010000000
......................................................................................................................................................................................................................................CAGCAGCAACAGC---A---------GC------------AACAGCA.............................................................................................................................................................................................................................................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG---CAGCAACA........................................................................................................................................................21200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCAACAGC.....................................................................................................................................................................24200.0510010000000
..............................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGC--------AGCA......................................................................................................................................................................................................................................22200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................AACAGCAG---CAGCAACAGCAGCA..................................................................................................................................................22200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACA---GCAGC....................................................................................................................................24200.0510000000001
..............................................................................................................A---------G------------------CAGCAGCAACAGCAGCAACAG---------------------------------------------CAG-------CA.........................................................................................................................................................................................................................................................................................................................28200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACAGCAG---CA..............................................................................................................................................................27200.0510100000000
...........C--AACAGCAGCAA-CAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
............................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCAG---C...............................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................................................AG------CAACAACAGCAGCAGCAA.....................................................................................................................................................................................20200.0510000100000
...........................................................................................................................................CAGCAGCAACAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
.........AGC--AACAGCAGCAA-CAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................................GCAGCAACAGC--------AGCAG---------CA---GCA....................................................................................................................................................................................................................21200.0510000100000
.........................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACAGCAG---CAGC............................................................................................................................................................26200.0510000000001
...................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAG---CAGCAACAGCAGCA..................................................................................................................................................26200.0510001000000
.................................................................................................................................................................................................................................................GC---A---------GC------------AACAGCAGCAGCAACA....................................................................................................................................................................................................................................................21200.0510000100000
.....................................................................................................................................................................................................................................................................................GCAGCAACAGC--------AGCAG---------CA---GCAAC---AG------CA.....................................................................................................................................................................................................27200.0510000000001
..................................................................................................................................................................................................................................................C---A---------GC------------AACAGCAGCAGCAACAGC--------AGCA......................................................................................................................................................................................................................................26200.0510001000000
....................................................................................................................................................................................................................................AGCAGCAGCAACAGC---A---------GC------------AACAGCAGCA..........................................................................................................................................................................................................................................................28200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG---CAGCAACAGCAGC...................................................................................................................................................24200.0510000000001
.................................................................................................................................................................................................................................................GC---A---------GC------------AACAGCAGCAGCAACAGC--------AGCA......................................................................................................................................................................................................................................27200.0510100000000
......................................................................................................................................................................................................................................................A---------GC------------AACAGCAGCAGCAACAGC--------AGCAG---------C...........................................................................................................................................................................................................................27200.0510000000001
.........................................................................................................................................................................................................................................................................................CAACAGC--------AGCAG---------CA---GCAAC---AG------C......................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................CA---GCAGCA------------GCA----------------GCATCAGC---A........................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACA---GCAGCA------------GC.....................................................................................................................27200.0510000000001
.......................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACAGCAG---CA..............................................................................................................................................................26200.0510001000000
...............................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGC--------AGC.......................................................................................................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................................................................................................AGCAG---------CA---GCAAC---AG------CAACAACA...............................................................................................................................................................................................22200.0510100000000
...........................................................................................................................................................................................................................................................................................................................GCAAC---AG------CAACAACAGCAGCAGC.......................................................................................................................................................................................23200.0510000001000
.........................................................................................................................................................................................................................................................................................................GCAG---------CA---GCAAC---AG------CAACAACAGC.............................................................................................................................................................................................23200.0510000100000
droPer2
TCGTC----A------CGGCAACCCGCAACAGCAGCAGC--AAATG--CAACAGCAGCAGCAAATGCAGCAACAGCAGCAACAGCAACAACAGCAG-------------------------------------------------------------CAAAT------------------------------------------------GCAGC-------------------AGCAACAGCAACAGCA------GC------------AAATGCAGCAACAGCAGC--------AGCAG---------CAGCAACAGC---AGCAACAA------------CAGCAACAACAGCAACAACAGCAG---CAACAACAGCCGCAACAACA---GCAACA------------ACA----------------GCAGCAAC---A----------------G--------------CG------CTCACAGCATCAGCAAACGCAGA----------C--------GAACAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................AACAACA---GCAACA------------ACA----------------GCAGCAAC---A----------------G--------------.........................................................2650.201010000
..................................................................................................................................................................................................................................................................................................................................................................................................AACA---GCAACA------------ACA----------------GCAGCAAC---A----------------G--------------.........................................................2390.111010000
...............................................................................................................................................................................................................................................................................................................................C---AGCAACAA------------CAGCAACAACAGC..............................................................................................................................................................................22200.051100000
.................................................................................................................................................................T------------------------------------------------GCAGC-------------------AGCAACAGCAACA...........................................................................................................................................................................................................................................................................................19200.051001000
.......................................................................................................................................................................................................................................................................................AACAGCAGC--------AGCAG---------CAGCA.......................................................................................................................................................................................................................19200.051001000
..................................................................................................................................................................................................................................................................................................................................................................................................AACA---GCAACA------------ACA----------------GCAGCAAC---.........................................................................................21200.051010000
..............................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGCAG---CAAC............................................................................................................................................................21200.051010000
droAna3
ACAATAAATTGC--AGCAGAAACAGCAGGCAGAGCAGGAGCGACGG--CAGCAGCAGCAGCCACAGCAGCAACAGCAGCAGCAGCAACAGCAACAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCAACAGC---------------AGCAGCAACAGCAGCAGCAGCCACAGCAGCAG--------------CA---ACAGC---AGCAACGA------------CAGCAGCAGCAGCAACGTCAGCAG---CAGCAGCAACGACAAC-------------------------------------------------------A---A---CAGCAAGCAG---TGCAGCAACAGCATCATGTGGAGCA------GC-AACAGACG----------G----------GGAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCCACAGC...............................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAGCCAC..................................................................................................................................................................................................................................................2220.501010000
..............................................................................................................................................................................................................................................GCAGCAACAGC---------------AGCAGCAACAGCAGCAGC........................................................................................................................................................................................................................................................2960.171010000
.....................................................................................................................................................................................................................................................................................GCAGCAGCCACAGCAGCAG--------------C...........................................................................................................................................................................................................................2070.141010000
.........................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCC....................................................................................................................................................................................................................................................21160.132011000
..................................................GCAGCAGCAGCCACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131000001
..................................................................................................................................................................................................................................................................................GCAGCAGCAGCCACAGCAGC............................................................................................................................................................................................................................................2080.131000001
...................................................................AGCAACAGCAGCAGCAGCAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102011000
...............................................................................................................................................................................................................................................CAGCAACAGC---------------AGCAGCAACAGCAGCA..........................................................................................................................................................................................................................................................26130.081010000
...................................................................................................C-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCAACAGC---------------AGCA......................................................................................................................................................................................................................................................................26130.081010000
...............................................................................................GCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCAACAGC---------------..........................................................................................................................................................................................................................................................................26140.071010000
...........................................................................................AACAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCAAC............................................................................................................................................................................................................................................................................................27150.071000001
...................................................................................................................................................................................................................CAAC-------------------AGCAGCAGCAACAGC---------------AGCAGC....................................................................................................................................................................................................................................................................25200.051010000
....................................................................................CAACAGCAACAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGC..................................................................................................................................................................................................................................................................................................28200.051010000
.........................................................................AGCAGCAGCAGCAACAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
..............................................................................................................................................................................................................................................GCAGCAACAGC---------------AGCAGCAACAGCAGA...........................................................................................................................................................................................................................................................26200.051100000
.............................................................................................CAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCA.................................................................................................................................................................................................................................................................................................20200.051010000
................................................................................................CAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................20200.051100000
.................................................................................................AAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGCAGCAGCAACAGC---------------..........................................................................................................................................................................................................................................................................24200.051010000
...........................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCC....................................................................................................................................................................................................................................................19200.051000001
........................................................................................AGCAACAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------AGC.....................................................................................................................................................................................................................................................................................................21200.051001000
................................................................................................................................................................................................................................................AGCAACAGC---------------AGCAGCAACA................................................................................................................................................................................................................................................................19200.051010000
......................................................................................ACAGCAACAGCAAC-------------------A------------------------------------------------------------------------------------------GCAAC-------------------........................................................................................................................................................................................................................................................................................................20200.051010000
..................................................................................................................................................................................................................................................CAACAGC---------------AGCAGCAACAGCAGCAGC........................................................................................................................................................................................................................................................25200.051010000
...................................................................................................................................................................................................................................................AACAGC---------------AGCAGCAACAGCA.............................................................................................................................................................................................................................................................19200.051000001
..............................................................................................................................................................................................................................................GCAGCAACAGC---------------AGCAGCAACAGC..............................................................................................................................................................................................................................................................23200.051010000
droBip1
CCAGC----AGC--AACAGCAAGCGGCTGCTGTCCAGGCAGCTCAC------------------------------------------------------CAACAA---CAGCAGC---------------------AACAGCTCCAACAGCAGCATCAGTTGCTGCAGCTGTC------CATTCAACAGGCGGCGCACCATCAGCAGCAGGAGC-------------------AGCATCGCCAACAGCAGCA---ACAACAGCAGC-----------------------------AGCAA---------CA---ACAGC---AG------------------------------------------CAGCA---CCAACAGCAGCAGCAGCAC---C------------ATCAGCAACAGC-------------AAGGCCA---TCCACAGGCACCAC---CGCCGCAGCA---------------------GCAACAGCAG----------------------CCACCSizeHit CountTotal NormTotal
No Reads
droKik1
GCATC----TAC--AGCAGCAGCAG-CAACATCACCAGCAGC-----------------------------------------------------------AACAA---CA---------------------------ACAGCATCTACAGCAGCAACAG---------------------------------------------CAG-------CAGCTGCAGCAACATCTACAGCAGCAACAGCAGC---------------AGCATCATCTACAGC-----------------AGCAG---------CA---GCATC---TA------CAGCAACAGCAGCATCTACAGCAGCAGCAGCAGCAG---CAGCATCTACAGCAGCAGCA---GCAGCA------------GCA----------------GCAGCATC---A------------T---C---T------------------CCAGCAGCAGCAGCAACAACAGC---------AT----------TACCCSizeHit CountTotal NormTotal
No Reads
droFic1
ACCTT----TTT--CGCCAAGATGTCCGGACGTGCTAACCAC-CGC--CAGCAGCATCAGCCGCAGCAGCATCAGCAGCAGCCGCAACAGCATCAGCAGC-------------------A---------------------------------GCCGCAG---------------------------------------------CAG-------CATCAGCAGC---------AGCCGCAGC------------------------------AGCATCAGCAGCAGCCGCAGCAG--------------CA---ACAGC---AGCAGCCG------------CAGCAGTCGCAGCAGCATCAACAG---CAGCCGAAGCAACAACAAAA---GCAGCC------------GCA----------------GCAGCAAC---AACGGCGGCAG---------CGACAGCAGCA---------------------GCAGCCGCAGC----------A----------GCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
GCGCC----TGC--AACAGCAACGTGCCGCGATGCTGGCCGC-CCG------------------------------------------------------AAATAC---CACAAGCGGTGG-----------------------------------TCAGATACCACCTCCGCCCCCGCCCGT-----CGGCAGTGC----CCAGCAGCAGCAAC----------------AGCAGCAACAAC---AGCAGCAACAACAACA-----------------------------------GCAGCAACAA---CA---ACAAC------------------------------------------------------------AGCAGCAGCAGCAA---C------------AGCAACACCAGC-------------AACCTCA---T---CATGGAGCAA---TGCAGCAGCA---------------------GCAATCGGAGG----------A----------TGACCSizeHit CountTotal NormTotal
No Reads
droRho1
GCGCC----TGC--AACAACAGCGCGCCGCGATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACCAGC---GG-----------------------------------TCAGATACCGCCCCCGCCCCCGCCCGT-----CGGCAGTGC----CCAGCAGCAGCAGC----------------AACAACAACAGC---AACAGCAGCAGCAGCAGCAAC-----------------------------AGCAA---------CA---ACAAC---AG------------------------------------------CAACA---ACAGCAGCAACAGCAGCCA---C------------AGCCACACCAGC-------------AACCTCA---T---CATGAAGCAC---TGCAGCAGCA---------------------GCAATCGGAGG----------A----------GGACCSizeHit CountTotal NormTotal
No Reads
droBia1
GCGGC----TGC--AGCAGCAGCGCGCCGCCATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACGGGC---GG-----------------------------------TCAGATACCGCCCCCGCCCCCGCCCGT-----CGGCACTGC----CCAGCAGCAGCAGC----------------AGCAGCAACAAC---AGCAGCAGCAGCAGCAACAAC-----------------------------AGCAG---------CA---ACAAC---AG------------------------------------------CAGCA---GCAACAGCAGCAGCAGCAA---C------------AGTCGCACCAGC-------------AACCTCA---T---CATGGAGCTGCACTGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACCSizeHit CountTotal NormTotal
No Reads
droTak1
GCGCC----TGC--AGCAGCAGCGTGCCGCGATGTTGGCCGC-CCG------------------------------------------------------CAACAC---CACAAGC---GG-----------------------------------TCAGATTCCGCCCCCGCCCCCGCCCGT-----CGGCAGTGC----CCAGCAGCAGCAGC----------------AGCAACAACAAC---AGCAGCAGCAGCAGCAACAAC-----------------------------AG---------------------C---AG------------------------------------------CAGCA---ACAACAGCAACA------G---C------------AGTCACACCAGC-------------AACCTCA---T---CACGGAGCAA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACCSizeHit CountTotal NormTotal
No Reads
droEug1
GCGTT----TGC--AACAACAGCGTGCCGCAATGTTGGCTGC-CCG------------------------------------------------------CAATAC---CACAGGC---GG-----------------------------------TCAGATACCGCCTCCGCCTCCACCCGT-----CGGCAGTGC----CCAGCAGCAGCAGC----------------AACAACAACAAC---AGCAACAGCAGCAACAACAAC-----------------------------AACAGCAGCAACAGCA---ACAAC---AG------------------------------------------CAGCA---GCAGCAGCAACAGCAACAA---C------------AGCCACATCAGC-------------AACCTCA---T---CATGGAGCTA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACCSizeHit CountTotal NormTotal
No Reads
dm3
GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAAGC---GG-----------------------------------TCAGATACCGCCACCACCCCCGCCCGT-----TGGCACTGC----CCAGCAGCAGCAAC----------------AGCAACAGCAAC---AGCAGCAGCAGCAACA---AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------AGTCGCATCAGC-------------AGCCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TGCAGCAGCA---------------------GCAGTCG..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................A---A---------------------------------------------------------------------CAGCAGCAA---C------------AGTCGCATCAGC-------------...............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCA---T---CATGGAGCCA---TGCA................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------CAGCAGCAA---C------------AGTCGCA.................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................C------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------AGT.....................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------AGTCGC..................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCATCAGC-------------AGCCGCA---T---CA...............................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................C---AGCAGCAGCAGCAACA---AC------------------------AGC............................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.........................................................................................................................................................................................................CCAGCAGCAGCAAC----------------AGCAACAGCAAC---A...........................................................................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................C------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------AG......................................................................................................................21200.2550000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CAACAGCAAC---AGCAGCAGCAG.................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000030
............................................................................................................................................................................................................................................................AGCAGCAACA---AC------------------------AGCAA--------------CA---.......................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAGCAGCAGCAACA---AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------.................................................................................................................................................2490.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................CAGCAGCAGCAACA---AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAG..............................................................................................................................................2750.2010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACA---AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------A.......................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAGCAGCAGCAACA---AC------------------------AGCAA--------------C...........................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA---AC------------------------AGCA...........................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---.....................................................................................................................................19190.1630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CA---AC------------------------AGCAA--------------CA---A---------------------------------------------------------------------CAGCAGCAA---C------------A.......................................................................................................................23130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................GCAGCAGCAAC----------------AGCAACAGCA.................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AGCAGCAGCAACA---AC------------------------AGCAA--------------C...........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................AC---AGCAGCAGCAGCAACA---AC------------------------AGCA...........................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAGGC---GG-----------------------------------TCAGATACCGCCCCCACCCCCGCCCGT-----TGGCACTGC----TCAGCAACAGCAGC----------------AGCAACAGCAAC---AGCAGCAGCAGCAGCA---AC---------------------AGCAGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGCAA---C------------AGTCGCATCAGC-------------AGCCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................AC---AGCAGCAGCAGCAGCA---AC---------------------AGCAG.............................................................................................................................................................................................................................................25201.3026000002600000000000
..............................................................................................................................................................................................................AACAGCAGC----------------AGCAACAGCAAC---............................................................................................................................................................................................................................................................................................21200.05100000000000100000
...........................................................................................................................................................................................................................................ACAGCAAC---AGCAGCAGCA..................................................................................................................................................................................................................................................................................18200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------------------GCAGTC...............................15200.05100000000001000000
..............................................................................................................................................................................................................AACAGCAGC----------------AGCAACAGCA.................................................................................................................................................................................................................................................................................................19200.05100000000000100000
....................................................................................................................................................................................................................................................................CA---AC---------------------AGCAGCAA--------------CA---A---------------------------------------------------------------CAGC...................................................................................................................................................19200.05100000000000100000
....................................................................................................................................................................................................................................................................CA---AC---------------------AGCAGCAA--------------CA---A---------------------------------------------------------------CAGCAGC................................................................................................................................................22200.05100000000000100000
.............................................................................................................................................................................................................CAACAGCAGC----------------AGCAACAGC..................................................................................................................................................................................................................................................................................................19200.05100000000001000000
..................................................................................................................................................................................................................................................C---AGCAGCAGCAGCAGCA---AC---------------------AGC...............................................................................................................................................................................................................................................22200.05100100000000000000
droSec2
GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAAGC---GG-----------------------------------TCAGATACCGCCCCCACCCCCGCCCGT-----TGGCACTGC----TCAGCAACAGCAGC----------------AGCAACAGCAAC---AGCAGCAGCAGCAACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGCAA---C------------AGTCGCATCAGC-------------AGCCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................C------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAG...........................................................................................................................................21200.1530003
..............................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAA---C------------AGTCGC..................................................................................................................1970.1410100
......................................................................................................................................................................................................................................................................................................................CA---A---------------------------------------------------------------CAGCAGCAGCAGCAA---C------------AGT.....................................................................................................................2270.1410010
.......................................................................................................................................................................................................................................................................................................A--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGCA.........................................................................................................................................18200.1020020
.....................................................................................................................................................................................................................................................................................................CAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGC..........................................................................................................................................19200.1020020
...............................................................................................................................................................................................................ACAGCAGC----------------AGCAACAGCAAC---AG..........................................................................................................................................................................................................................................................................................22120.0810010
............................................................................................................................................................................................................................................CAGCAAC---AGCAGCAGCAGCAACA---GC------------------------A..............................................................................................................................................................................................................................................26180.0610010
...........................................................................................................................................................................................................................................ACAGCAAC---AGCAGCAGCAGCAACA---.........................................................................................................................................................................................................................................................................24200.0510010
..................................................................................................................................................................................................................................................................AACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCA..................................................................................................................................................19200.0510010
......................................................................................................................................................................................................................................................................................................AA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGC..........................................................................................................................................18200.0510010
...............................................................................................................................................................................................................................................CAAC---AGCAGCAGCAGCAACA---GC------------------------...............................................................................................................................................................................................................................................22200.0510010
...............................................................................................................................................................................................................................................................AGCAACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCAGC................................................................................................................................................24200.0511000
...................................................................................................................................................................................................................................................................................................AGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAG...........................................................................................................................................20200.0510010
.........................................................................................................................................................................................................................................CAACAGCAAC---AGCAGCAGC...................................................................................................................................................................................................................................................................................19200.0510010
...............................................................................................................................................................................................................................................................AGCAACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------C......................................................................................................................................................18200.0510010
...............................................................................................................................................................................................................................................................AGCAACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAG....................................................................................................................................................20200.0511000
...................................................................................................................................................................................................................................................................ACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCAGCA...............................................................................................................................................21200.0511000
..........................................................................................................................................................................................................................................AACAGCAAC---AGCAGCAGCAGC................................................................................................................................................................................................................................................................................21200.0510001
................................................................................................................................................................................................................................................AAC---AGCAGCAGCAGCAACA---GC------------------------AGCA...........................................................................................................................................................................................................................................25200.0510010
......................................................................................................................................................................................................................C----------------AGCAACAGCAAC---AGCAGCAG....................................................................................................................................................................................................................................................................................21200.0510100
........................................................................................................................................................................................................................................GCAACAGCAAC---AGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................24200.0510001
..........................................................................................................................................................................................................................................................................C------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGCAGCAGCAGCA.........................................................................................................................................23200.0510010
...............................................................................................................................................................................................................................................................AGCAACA---GC------------------------AGCAA--------------CA---A---------------------------------------------------------------CAGC...................................................................................................................................................21200.0510010
droYak3
GCGGC----TGC--AGCAGCAGCGTGCCGCAATGCTGGCCGC-CCG------------------------------------------------------CAACAC---CACAGGC---GG-----------------------------------TCAGATACCGCCCCCACCCCCGCCCGT-----TGGCACTGC----TCAGCAGCAGCAGC----------------AGCAGCAACAAC---AGCAGCAGCAACAGCAGCAGC-----------------------------AGCAG---------CA---ACAGC---AG------------------------------------------CAGCA---ACAGCAGCAGCAGCAGCAA---C------------AGTCGCATCAGC-------------AACCGCA---T---CATGGAGCCA---TGCAGCAGCA---------------------GCAGTCGGAGG----------A----------GGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................CAACAAC---AGCAGCAGCA..................................................................................................................................................................................................................................................................................17200.25500000000005
..........................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGC-----------------------------AGCAG---------CA---.......................................................................................................................................................................................................................24200.10202000000000
....................................................................................................................................................................................................................................................................................................................................G------------------------------------------CAGCA---ACAGCAGCAGCAGCAGCA.........................................................................................................................................24200.10202000000000
.........................................................................................................................................................................................................................................................................................................GCAG---------CA---ACAGC---AG------------------------------------------CAGCA---ACAGCAGC...................................................................................................................................................26200.10202000000000
..........................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGC-----------------------------AGCAG---------............................................................................................................................................................................................................................22200.10202000000000
........................................................................................................................................................................................................................................GCAGCAACAAC---AGCAGCAGCAACAGCAGC..........................................................................................................................................................................................................................................................................29180.06100100000000
................................................................................................................................................................................................................CAGCAGC----------------AGCAGCAACAAC---AGCAGC......................................................................................................................................................................................................................................................................................25200.05100000000001
.........................................................................................................................................................................................................TCAGCAGCAGCAGC----------------AGCAGCAAC..................................................................................................................................................................................................................................................................................................23200.05100000000001
.......................................................................................................................................................................................................................................AGCAGCAACAAC---AGCAGCAGCAACAGC.............................................................................................................................................................................................................................................................................27200.05100100000000
...........................................................................................................................................................................................................................................................................................................AG---------CA---ACAGC---AG------------------------------------------CAGCA---ACA........................................................................................................................................................19200.05101000000000
.............................................................................................................................................................................................................................................AACAAC---AGCAGCAGCAACAGC.............................................................................................................................................................................................................................................................................21200.05100000010000
........................................................................................................................................................................................................................................GCAGCAACAAC---AGCAGCAGCAACAGC.............................................................................................................................................................................................................................................................................26200.05101000000000
droEre2
CCAGT----CGC--ATCAGCAGCAG-CAGCCGCACCAGTCGC-----------------------------------------------------------ATCAG---CA---------G---------CAGCAGCAGCTGCTTCAGCAGCAGCAAC---------------------------------------------TTCAGCAGCAGC----------------AGCAGCAACTTC---AGC---------------------AGCAGCATCAGCAGCAGC--------TGCAG---------CA---TCAAC---AG------CAGCTGCAACATCAACAGCAGCTGCAGCATCAACAG---CAGCTGCAGCATCAACACCA---ACTGCA------------GCA----------------GCAGCAGC---ATCAGCAGCAG---------CTGCAGCATCA---------------------GCATCACCAACAGCAGC---AGTACGCAGA--CG--ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCAACAGCAGC---AGTACGCAGA--C....2611.0010000100
.....................................GTCGC-----------------------------------------------------------ATCAG---CA---------G---------CAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................2340.5020000200
...........................................................................................................................................................AAC---------------------------------------------TTCAGCAGCAGC----------------AGCAGCA....................................................................................................................................................................................................................................................................................................2220.5010000100
.....................GCAG-CAGCCGCACCAGTCGC-----------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3311000000
...........................................................................................................................................................................................................................................................................................................................................................AGCAGCTGCAGCATCAACA....................................................................................................................................................................1930.3310001000
.............................................................................................................................................................................................................................................................................................................................................................................AG---CAGCTGCAGCATCAACA...............................................................................................................................................1930.3310001000
.......................................CGC-----------------------------------------------------------ATCAG---CA---------G---------CAGCAGCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................2230.3310001000
..........................................................................................................................................................................................................................................................................................AGCAGC--------TGCAG---------CA---TCAAC---A..............................................................................................................................................................................................................1930.3310001000
..................................................................................................................................................................................................................GCAGC----------------AGCAGCAACTTC---AGC---------------------AGCA................................................................................................................................................................................................................................................................2430.3310100000
....................................................................................................................................................................................................................AGC----------------AGCAGCAACTTC---AGC---------------------AGCA................................................................................................................................................................................................................................................................2250.2010000010
..................................................................................................................................................AGCAGCAGCAAC---------------------------------------------TTCAGCAGCA.............................................................................................................................................................................................................................................................................................................................2250.2010000010
.............................................................................................................................................................C---------------------------------------------TTCAGCAGCAGC----------------AGCAGC.....................................................................................................................................................................................................................................................................................................19160.1320010010
......................................................................................................................................................GCAGCAAC---------------------------------------------TTCAGCAGCAGC----------------...........................................................................................................................................................................................................................................................................................................2080.1311000000
........................................................................................................................................................................................................................................GCAGCAACTTC---AGC---------------------AGCAGC..............................................................................................................................................................................................................................................................2080.1311000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCA----------------GCAGCAGC---ATCAGCA..................................................................................21200.1020000200
.............................................................................................................................................................................................................................................................................................................................................................................................................CA------------GCA----------------GCAGCAGC---ATCAGCA..................................................................................20200.1022000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCA----------------GCAGCAGC---ATCAGCAGCAG---------C....................................................................26200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................A----------------GCAGCAGC---ATCAGCAGCAG---------C....................................................................21200.0511000000

Generated: 05/18/2015 at 12:34 AM