ID:

dwi_1037

 Coordinate:

scf2_1100000004515:662875-663025 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.2 -20.9 -20.9

Flybase annnotation

CDS [Dwil\GK19912-cds]; exon [dwil_GLEANR_2519:3]; intron [Dwil\GK19912-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAACTTATGCAATTTTTTATTTTGTAGTTGTGTAGCAGACAGGCTACCTTCTTTGGTTTTGAGTTTACAATATACACACAAAAATATATGTATGTATATGTATATTATTTTTGGGTATGGGTGACAAACAACTTTAACTCAGTTGGTATTTATATCTATCTCACTCTCTCTTTGTTTGGTCCCTCTCGTTTTTTCTGTAGACCTGTTCGCAATTGATCAAAGCTGGCCTCAAGCTGTCCATACAAAGTAA
**************************************************............(((.((((.((((((.(((........))).)))))))))).))).....((((...(((...(((((((.........(((.((((........))))..)))......)))))))..))).))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M020
head
 V118
embryo
 M045
female body
 V119
head
..................................................................................................................................................................................................................CAATTGATCAAGGCTGGCC...................... 19 1 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................AGACCTGTTCGCAATTGATCAAAGCT.......................... 26 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................ATTGATCAAAGTTGGCCTCAAGCTGTCC........... 28 1 1 1.00 1 1 0 0 0 0
..................................................................................................ATGTATATTATTTTTGGGTATGGGT................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0
.................TTATTTTGTAGTTGTGTAGC...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................CGCAATTGATCAAAGCTGGCCT..................... 22 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................CGACCTTAGCTCAGTTGGTA...................................................................................................... 20 3 6 0.33 2 0 0 0 2 0
................................................................................................................................CCGACCTTAACTCAGTTGGT....................................................................................................... 20 3 4 0.25 1 0 0 0 1 0
...............................................................................................................TTGGGTATGGGTGCGAAA.......................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0
................................................................................................................................CCGACTTTAGCTCAGTTGGT....................................................................................................... 20 3 10 0.10 1 0 0 0 1 0
...................................................................................................................................CCTTTAGCTCAGTTGGTA...................................................................................................... 18 2 20 0.05 1 0 0 0 1 0
....................................................................................................................................CATTAACTCAGTTGGTAGA.................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TTTTGAATACGTTAAAAAATAAAACATCAACACATCGTCTGTCCGATGGAAGAAACCAAAACTCAAATGTTATATGTGTGTTTTTATATACATACATATACATATAATAAAAACCCATACCCACTGTTTGTTGAAATTGAGTCAACCATAAATATAGATAGAGTGAGAGAGAAACAAACCAGGGAGAGCAAAAAAGACATCTGGACAAGCGTTAACTAGTTTCGACCGGAGTTCGACAGGTATGTTTCATT
**************************************************............(((.((((.((((((.(((........))).)))))))))).))).....((((...(((...(((((((.........(((.((((........))))..)))......)))))))..))).))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
...................................CGTCTGTCCGAAGGAAGC...................................................................................................................................................................................................... 18 2 3 3.00 9 8 1 0
..................................TCGTCTGTCTGGTGGAAG....................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0
................................CAGCGTCAGTCCGAGGGAAG....................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0
...................................CGTCTGTCCGAAGGAAGCC..................................................................................................................................................................................................... 19 3 20 0.20 4 1 3 0
...........................................................................................................................................................................AGACAAACCAGGGAGTGC.............................................................. 18 2 7 0.14 1 1 0 0
.................................................................................................................................................................................ACCAGGGACAGCAACAAA........................................................ 18 2 16 0.06 1 0 0 1
..............................................TGGCAGATAACAAAACTCAA......................................................................................................................................................................................... 20 3 17 0.06 1 0 1 0
..............................................TGGCAGATAACAAAACTCA.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004515:662825-663075 - dwi_1037 AAAA-CTTATGCAATTTTTTATTTT-------------------G-TA------GTTGTGT--AGCAG-ACAGGCTA----C-CTTCTTTGGTTTTGAGTT--------------------------------------------TACAATATACA--------CACAAAAATATATGTATGT--ATATGTATATTATTTTTG-----------GGTATGGGTGACAAACAACTT---------------------------------------------------------------------------------------------------------------------TAACTCAGT-------------------------TGGTATTTATATCT--ATC------------TCA-CTC------------------------TCTC-TTTGTTTGGTCCCTCTC-------GT---TTTTTCTGTAGACCTGTTCGCAATTGATCAAAGCTGGCCTCAAGCTGTCCATACAAAGTA----A
droVir3 scaffold_12928:5217682-5217820 + TTTG-GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTGACAAACAACTTTTGGACCTTGACTAATCGTTCTCTCTCTCTCTCTCTCTGTTTTTCTATCTCTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TCTGTAGACCTGTTCGCAGCTGATCAAAGCTGGCCTCAAGCTGTCCATTCAAAGCA----A
droMoj3 scaffold_6500:13721933-13722155 - CAAT-GTGA--CATAT-------ATGA-TTTACATATTTTTAGTA-TA------ATTGGGC--TTGCA-ATAGACTA----ACAGTATTTTGTTTTAGCTG--------------------------------------------CAGAATAAAAA---------AAAAAAATAT--ATATATATATATATATAT--ATAT-------------------------------------------------------------------------------------TATATATTTACAGAGATGCGTGCTTCG--AACCA--------------------AATTAGTAACCA-AACTTGATTG---T----TATATAATATTTTAATGACATTA------TG---------------TACA---------------GTT------TAT-------------------TTT-------AT---TTTTTTTG--------------------------------------------------------T
droGri2 scaffold_15110:13937009-13937134 - ATAT-ACA---CACAT-------ATATAT-----------------------------------------------------------------------------------ATTT---ATATATAAA---TATGTTT----G---GCTATG----CACATT----------------------------------------------------------------------------------------------------------------------------TAAATAT--TTATTGAGG--------T-----------------------------------------------------ATTTGTATATA---------------------------------------------------------TTATCATGGTTTGT------------------TTTC-------GA---TTTTTTTGT-------TTCGCTACGAATTAAA-------------------------------AC
dp5 3:16805435-16805554 + AAGT-ATA---TATAT-------ATACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAATAT--AATTGATTGAACTGTGCGAAGGATATATCCAC-------------------------TAATTTCAT-------------------------TTGTGTTCTTCTCT--CTC------------TCT-CTC------------------------TCTC-TCCCTCCGTTCCTCTTC-------AT---TTTTG----------------------------------------------------------CT
droPer2 scaffold_2406:368-479 + ATTT-TTT----------------TTTTT-TTTT----------TAATTTTATATTTTTGA--ACGAG-A-ACGATA----G-TTCTTGCTGATTACTGAT--------------------------------------------TGCAGTAAACG---------AAAGATGTAT--GTATGT--ATGTACATATAACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG----T
droAna3 scaffold_13117:2345302-2345409 - ACCT-ATA---TATAT-------ATGTAT-GTCA----------T-AGTATATG----C--ATAGCTA-AAACGCAA----T-CAT----------------ACATATATGTGTGC---GT-----------------------ACACCGTA--------TATG--CATGTATATATATATAT--ATATATATA----------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droBip1 scf7180000396561:32222-32308 + TTAG-GTG---TAAGTTGTTATTAT-------------------G-TA------G--------------------------C-CAT------------------------------------------GTAAGGATTTGTCCGTTGGCGAAA--------TAAACAAAAAAATAA--ATAAATATATATATATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1 scf7180000302544:120202-120334 - AGAT-ATA---TGTAT-------GTATA-------------------------------------------------------------------------------------T-------------G---------------TAT---ATG--------------------------T--AA--CC----------------------------------------------------------------------------------------------ATACATACATAT--GTATGGATG---------AGCGGTG--------------------CC---------------CTGT-------------------------GGGTATTT------TC---------------TACG---------------CTT------TTCTGCCTTTTGC------------------------CT--GCTGC------------------------TGCTCCTGTTGTTGTTAATCCTTTTCGAAATT
droFic1 scf7180000454072:1974027-1974186 + TTTT-AAG---ATTTA-------ATATTT------------------------------------------------------------------------------------T--AAC---------AAAATTGTTT-------------------------------------------GT--TTATGAAAGTTAAATTTTC------------------------------------------------------------------------------------------------------CTGTGGAATAAAC---TCCTC-------------------------T-------------------------------------------------AAC-----CGCTAACTCC-------GCCTTTTTTGTTTTGG---------------------------------------CC--TTTGCAGACCTGCTCTCGCCTGATTAAAGAGGGCCTGAAGCTTTCCATCCAGAGCA----A
droEle1 scf7180000491006:1440247-1440379 - TTTT-GTT----------------TGTTT-GTTT----------T-ATTTTATA----C--AACTTTT-TTTTAT--TAGT-------------------ATACATAGAGATATGC---AAATATAAA----------------------------------------------------------T----------------------------------------------------------------------------------------------ATATATATATAT--ATATAGATGCGTTGTTTAAGAAGCA--------------------AA----CAACAG-AACTCACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACAT----A
droRho1 scf7180000779986:624663-624766 + ATAT-ATA---TATAT-------GTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTATGT--GTGTGTGTG---------AGGGGTT------------------CAA-GT---AGTGC-TGCTGGCTTAGATT---------------------------------------------------------TCTGTTCTTTTTTTTTTGGATTTT------------------TTTT-------AT---TTTT------------------------------------------------------------T
droBia1 scf7180000301623:232204-232325 + TTTT-GTT----------------TGTTT-GTTT----------T-ATTTTATA----C--AACCTTT-TTTTAT--TAGT-------------------ATACATAGAGATATGC---AAATATAAA---------------TAT---ATA--------------------------T--AT--AT----------------------------------------------------------------------------------------------ATATATATATAT--ATATAGATGCGTTGTTTAAGAAACA--------------------AA----CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC
droTak1 scf7180000415141:13266-13390 - TTTT-GTT----------------TGTTT-GTTT----------T-ATTTTATA----C--AACTTTTTTTTTAT--TAGT-------------------ATACATAGAGATATGC---AAATATAAA---------------TAT---ATA--------------------------TTTAT--AT----------------------------------------------------------------------------------------------ATATATATATAT--ATGTAGATGCGTTGTTTAAGAAACA--------------------AA----CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC
droEug1 scf7180000409452:1551630-1551757 - AAGA-TTAAGGCAATTTTTT-----------------------------------------------------AT--TGGA-------------------ATTTAT-------------ATATATAAA----------------------------------------------------TAA--AAATTTATATGTCTAAAAAGTATTTCTTAGAAATTCGTAGAAAATAACTT-------------------------------------------------------------------------------------------A-------------AA----AA----------------------------------------------------------------------------ATAGT--TTAACATTTTT-------------------------CCC-------AC---CCTTTC----------------------------------------------------TC----T
dm3 chr3L:22796702-22796845 - TATA-TAT----ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGTATATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGCCCACAATCT--AGC------------TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCATAAAGCTGCTTTGTAATG--CACTGCTGGTCTTAGGT-------------------T
droSim2 x:9128827-9128953 + TTATTATA---TATAT-------GTATA-------------------------------------------------------------------------------------T--AAT---------ATATAT-------------------------------------------ATATAT--ATATATATATTATTATAATATATATATT----------------------------------------------------------------------------------ATATATATGTATTATT----------------------------------------------------------------------------------ATACTCT--AGT------------T------TGTAATCTTTTCATTTTAC--------------------CCTTCTA-----ATA-----TTTTC--------------------------------------------------AG-----TA
droSec2 scaffold_10:975675-975770 - GTAT-TTG----------------ACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTACTCTCGAACTAC--------------------------------------CT-----------------GACTTTC--TTTGCAGACCTGTTCGCGCCTGATCAAGGAGGGCCTGAAGCTGTCCATCCAGAGCA----A
droYak3 X:1056629-1056828 - TTTA-AAT----------------T-------------------G-AAGTTATA----T--AGCTGGCTCTGAGT--TTCA-------------------ATTCTAAATAATATCT---ATCTGTCTA---------------TCT---ATC--------------------------T--AT--CT----------------------------------------------------------------------------------------------ATATATATAGAA--AAAAAAGTACGCTGTAGAAAGGATATTTCGTC-------------------------T-------------------------------------------------AACTCACTCTCGAACT----------------------------TT------------------TCCC-------GA---TC--TTTGCAGACCTGTTCGCGCCTGATCAAGGAGGGCCTGAAGCTGTCCATCCAGAGCA----A
droEre2 scaffold_4690:14163833-14163984 + ATAT-ACA---CACAC-------ATATAT----------------------------------------------------T-TAT------------------------------------------ATATATATTTATACATAC---ATG--------TA------------T--ATATAT--ATA--------------------------------------------------------------------------------------------------TACATAT--ATATGTATATGTCAACCAGAACGCA--TCTGTGTATGCCCAGCTAA-GT---AAT------------------------------------------------------------------------TA------------------------TCTG-CGTGTGGATTTCCGCTCGTTGTGTG-----TTTTC--------------------------------------------------TGTA----G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAAA-CTTATGCAATTTTTTATTTT-------------------G-TA------GTTGTGT--AGCAG-ACAGGCTA----C-CTTCTTTGGTTTTGAGTT--------------------------------------------TACAATATACA--------CACAAAAATATATGTATGT--ATATGTATATTATTTTTG-----------GGTATGGGTGACAAACAACTT---------------------------------------------------------------------------------------------------------------------TAACTCAGT-------------------------TGGTATTTATATCT--ATC------------TCA-CTC------------------------TCTC-TTTGTTTGGTCCCTCTC-------GT---TTTTTCTGTAGACCTGTTCGCAATTGATCAAAGCTGGCCTCAAGCTGTCCATACAAAGTA----ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTGTTCGCAATTGATCAAAGCT..............................2611.00110000
...........................................................................................................................................................................................ATGTATATTATTTTTG-----------GGTATGGGT....................................................................................................................................................................................................................................................................................................................................2511.00100010
..................TTATTTT-------------------G-TA------GTTGTGT--AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAATTGATCAAAGCTGGCCT.........................2211.00100100
droVir3
TTTG-GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTGACAAACAACTTTTGGACCTTGACTAATCGTTCTCTCTCTCTCTCTCTCTGTTTTTCTATCTCTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TCTGTAGACCTGTTCGCAGCTGATCAAAGCTGGCCTCAAGCTGTCCATTCAAAGCA----ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CAAT-GTGA--CATAT-------ATGA-TTTACATATTTTTAGTA-TA------ATTGGGC--TTGCA-ATAGACTA----ACAGTATTTTGTTTTAGCTG--------------------------------------------CAGAATAAAAA---------AAAAAAATAT--ATATATATATATATATAT--ATAT-------------------------------------------------------------------------------------TATATATTTACAGAGATGCGTGCTTCG--AACCA--------------------AATTAGTAACCA-AACTTGATTG---T----TATATAATATTTTAATGACATTA------TG---------------TACA---------------GTT------TAT-------------------TTT-------AT---TTTTTTTG--------------------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................TTGATTG---T----TATATAATAT......................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................................................................ATTTACAGAGATGCGTGCTT............................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................TGCTTCG--AACCA--------------------AATTAGT........................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................ATTTACAGAGATGCGTGCTTCG--AACCA--------------------...............................................................................................................................................................................................................2711.001000100
droGri2
ATAT-ACA---CACAT-------ATATAT-----------------------------------------------------------------------------------ATTT---ATATATAAA---TATGTTT----G---GCTATG----CACATT----------------------------------------------------------------------------------------------------------------------------TAAATAT--TTATTGAGG--------T-----------------------------------------------------ATTTGTATATA---------------------------------------------------------TTATCATGGTTTGT------------------TTTC-------GA---TTTTTTTGT-------TTCGCTACGAATTAAA-------------------------------ACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
AAGT-ATA---TATAT-------ATACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAATAT--AATTGATTGAACTGTGCGAAGGATATATCCAC-------------------------TAATTTCAT-------------------------TTGTGTTCTTCTCT--CTC------------TCT-CTC------------------------TCTC-TCCCTCCGTTCCTCTTC-------AT---TTTTG----------------------------------------------------------CTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTCT--CTC------------TCT-CTC------------------------TCTC-..............................................................................................21200.0510100000000
droPer2
ATTT-TTT----------------TTTTT-TTTT----------TAATTTTATATTTTTGA--ACGAG-A-ACGATA----G-TTCTTGCTGATTACTGAT--------------------------------------------TGCAGTAAACG---------AAAGATGTAT--GTATGT--ATGTACATATAACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG----TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................GAT--------------------------------------------TGCAGTAAACG---------AAAGATGT......................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
...................................................................................................................................................CAGTAAACG---------AAAGATGTAT--GTATGT--..........................................................................................................................................................................................................................................................................................................................................................................25200.051001000
droAna3
ACCT-ATA---TATAT-------ATGTAT-GTCA----------T-AGTATATG----C--ATAGCTA-AAACGCAA----T-CAT----------------ACATATATGTGTGC---GT-----------------------ACACCGTA--------TATG--CATGTATATATATATAT--ATATATATA----------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTAG-GTG---TAAGTTGTTATTAT-------------------G-TA------G--------------------------C-CAT------------------------------------------GTAAGGATTTGTCCGTTGGCGAAA--------TAAACAAAAAAATAA--ATAAATATATATATATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
AGAT-ATA---TGTAT-------GTATA-------------------------------------------------------------------------------------T-------------G---------------TAT---ATG--------------------------T--AA--CC----------------------------------------------------------------------------------------------ATACATACATAT--GTATGGATG---------AGCGGTG--------------------CC---------------CTGT-------------------------GGGTATTT------TC---------------TACG---------------CTT------TTCTGCCTTTTGC------------------------CT--GCTGC------------------------TGCTCCTGTTGTTGTTAATCCTTTTCGAAATTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTT-AAG---ATTTA-------ATATTT------------------------------------------------------------------------------------T--AAC---------AAAATTGTTT-------------------------------------------GT--TTATGAAAGTTAAATTTTC------------------------------------------------------------------------------------------------------CTGTGGAATAAAC---TCCTC-------------------------T-------------------------------------------------AAC-----CGCTAACTCC-------GCCTTTTTTGTTTTGG---------------------------------------CC--TTTGCAGACCTGCTCTCGCCTGATTAAAGAGGGCCTGAAGCTTTCCATCCAGAGCA----ASizeHit CountTotal NormTotal
No Reads
droEle1
TTTT-GTT----------------TGTTT-GTTT----------T-ATTTTATA----C--AACTTTT-TTTTAT--TAGT-------------------ATACATAGAGATATGC---AAATATAAA----------------------------------------------------------T----------------------------------------------------------------------------------------------ATATATATATAT--ATATAGATGCGTTGTTTAAGAAGCA--------------------AA----CAACAG-AACTCACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACAT----ASizeHit CountTotal NormTotal
No Reads
droRho1
ATAT-ATA---TATAT-------GTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTATGT--GTGTGTGTG---------AGGGGTT------------------CAA-GT---AGTGC-TGCTGGCTTAGATT---------------------------------------------------------TCTGTTCTTTTTTTTTTGGATTTT------------------TTTT-------AT---TTTT------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
TTTT-GTT----------------TGTTT-GTTT----------T-ATTTTATA----C--AACCTTT-TTTTAT--TAGT-------------------ATACATAGAGATATGC---AAATATAAA---------------TAT---ATA--------------------------T--AT--AT----------------------------------------------------------------------------------------------ATATATATATAT--ATATAGATGCGTTGTTTAAGAAACA--------------------AA----CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotal
No Reads
droTak1
TTTT-GTT----------------TGTTT-GTTT----------T-ATTTTATA----C--AACTTTTTTTTTAT--TAGT-------------------ATACATAGAGATATGC---AAATATAAA---------------TAT---ATA--------------------------TTTAT--AT----------------------------------------------------------------------------------------------ATATATATATAT--ATGTAGATGCGTTGTTTAAGAAACA--------------------AA----CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotal
No Reads
droEug1
AAGA-TTAAGGCAATTTTTT-----------------------------------------------------AT--TGGA-------------------ATTTAT-------------ATATATAAA----------------------------------------------------TAA--AAATTTATATGTCTAAAAAGTATTTCTTAGAAATTCGTAGAAAATAACTT-------------------------------------------------------------------------------------------A-------------AA----AA----------------------------------------------------------------------------ATAGT--TTAACATTTTT-------------------------CCC-------AC---CCTTTC----------------------------------------------------TC----TSizeHit CountTotal NormTotal
No Reads
dm3
TATA-TAT----ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGTATATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGCCCACAATCT--AGC------------TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCATAAAGCTGCTTTGTAATG--CACTGCTGGTCTTAGGT-------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................TATATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GT...................................................................................................................................................................................25114.00140000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000010000101000000000000002020100000
..........................................................................................................................................................................................TGTATATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GT...................................................................................................................................................................................27111.00110000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100300000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------GATTGTT--CCCATAAAGCTGCTTTGTAA.........................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTTGTTT-----------------GATTGTT--CCCATAAAGC...................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT-----------------GATTGTT--CCCATAAAGCTGCTT..............................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGCCCA.........................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GT...................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................TAAGACGTA----------AGGCCCACAATCT--AGC------------..................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT-----------------GATTGTT--CCCATAAAGCTGC................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GT...................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCA.........................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTGCTTTGTAATG--CACTGCT..............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AC--GAATGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGG.............................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGC............................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--.............................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCC..........................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--C............................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAATG--CACTGCTGGTCTTAGGT-------------------.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AAGAC--GAATGAAGA--------C-----------------------------------------------------GTTAAGACG............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................TATGTATATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGA......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GTT..................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-GTTGTTT-----------------GATTGTT--CCCAT........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GA--------C-----------------------------------------------------GTTAAGACGTA----------AGGCCCACAAT.....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAATG--CACTGCTGGT...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------GATTGTT--CCCATAAAGCTGCTTTG............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCA.........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAATGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGCC...........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAGACGTA----------AGGCCCACAATCT--AGC------------TCC-C.............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TAAGACGTA----------AGGCCCACAATCT--AGC------------T.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT-----------------GATTGTT--CCCATAAAGC...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................ATA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------G....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T--AGC------------TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTG.................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTGCTTTGTAATG--CACT.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--.............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTTGTTT-----------------GATTGTT--CCCATAAAGCT..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GAC--GAATGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGA............................................................................................................................................................2811.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------GATTGTT--CCCATAAAGCTGCTTTGT...........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CACAATCT--AGC------------TCC-CTT------------------------TGTT-GTTGTT........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------GATTGTT--CCCATAAAGCTGC................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATAAAGCTGCTTTGTAATG--CACT.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GTTGTTT-----------------GATTGTT--CCCATAAAGC...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................C-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCA.........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GC------------TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGT................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................C-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCATAA......................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAGACGTA----------AGGCCCACAATCT--AGC------------T.................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................CCCACAATCT--AGC------------TCC-CTT------------------------TGTT-GT............................................................................................2511.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAATGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGC............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--CCCATAAAGCTGCTTTG............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCATA.......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCCATAAAGCTGCTTTGTAATG--CAC..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GACGTA----------AGGCCCACAATCT--AGC------------TCC-C.............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................C------------TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT-----------------GATTGTT--CCCATAAAGCTGCT...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCCATAAAGCTGCTTTGTA..........................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTGCTTTGTAATG--CACT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CC...........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GTTGTTT-----------------GATTGTT--CCCATAAAGCTGC................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CC...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCCATAAAGCTGCTTTGTAATG--.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGTAATG--CACTGCTGGTCTTA.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCAT........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................TA--------------------------------------------------------------------------------------------TGAAGAC--GAATGAAGA--------C-----------------------------------------------------G....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTT------------------------TGTT-GTTGTTT-----------------GATTGTT--CCCA.........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TGAAGA--------C-----------------------------------------------------GTTAAGACGTA----------AGGCCC..........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CCCATAAAGCTGCTTTGTAATG--CTAG.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGAAGAC--GAATGAAGA--------C-----------------------------------------------------GTTAAGACGT...........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATA.........................................................................................................................................................................................................................................................................................................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGTATATA--------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAT----ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATA...........................................................................................................................................................................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T----ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGTA.....................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAT----ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATG.......................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATG.......................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGTATA...................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T----ATGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGT......................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATG.......................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAATG--CACTGCTCC............................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.............TGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------ATAT--GTATATATATGTA.....................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTATTATA---TATAT-------GTATA-------------------------------------------------------------------------------------T--AAT---------ATATAT-------------------------------------------ATATAT--ATATATATATTATTATAATATATATATT----------------------------------------------------------------------------------ATATATATGTATTATT----------------------------------------------------------------------------------ATACTCT--AGT------------T------TGTAATCTTTTCATTTTAC--------------------CCTTCTA-----ATA-----TTTTC--------------------------------------------------AG-----TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................TTATTATAATATATATATT----------------------------------------------------------------------------------............................................................................................................................................................................................................................................................1921.00200000200000000000
droSec2
GTAT-TTG----------------ACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTACTCTCGAACTAC--------------------------------------CT-----------------GACTTTC--TTTGCAGACCTGTTCGCGCCTGATCAAGGAGGGCCTGAAGCTGTCCATCCAGAGCA----ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCGCCTGATCAAGGAG..............................2011.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATCAAGGAGGGCCTGAAGCTGTC................2811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCCTGATCAAGGAGGGC...........................2011.0010010
droYak3
TTTA-AAT----------------T-------------------G-AAGTTATA----T--AGCTGGCTCTGAGT--TTCA-------------------ATTCTAAATAATATCT---ATCTGTCTA---------------TCT---ATC--------------------------T--AT--CT----------------------------------------------------------------------------------------------ATATATATAGAA--AAAAAAGTACGCTGTAGAAAGGATATTTCGTC-------------------------T-------------------------------------------------AACTCACTCTCGAACT----------------------------TT------------------TCCC-------GA---TC--TTTGCAGACCTGTTCGCGCCTGATCAAGGAGGGCCTGAAGCTGTCCATCCAGAGCA----ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGGCCTGAAGCT...................1811.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTGAAGCTGTCCATCC...........2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGAAGCTGTCCATCCAGA........2211.00100100000000
droEre2
ATAT-ACA---CACAC-------ATATAT----------------------------------------------------T-TAT------------------------------------------ATATATATTTATACATAC---ATG--------TA------------T--ATATAT--ATA--------------------------------------------------------------------------------------------------TACATAT--ATATGTATATGTCAACCAGAACGCA--TCTGTGTATGCCCAGCTAA-GT---AAT------------------------------------------------------------------------TA------------------------TCTG-CGTGTGGATTTCCGCTCGTTGTGTG-----TTTTC--------------------------------------------------TGTA----GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 12:28 AM