ID:

dwi_1030

 Coordinate:

scf2_1100000004515:195153-195360 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8 -29.8 -29.6

Flybase annnotation

exon [dwil_GLEANR_2546:1]; CDS [Dwil\GK19941-cds]; CDS [Dwil\GK19941-cds]; exon [dwil_GLEANR_2546:2]; intron [Dwil\GK19941-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAAGGAGCAGGAATCGGCGCCAGCAATGGCCGAAATAGCCGCCTCCAGCGTAAGAATAAGAACCTATATTTTTTTTCCTCTCCATTCCGTTCCGCGTATTTGCTGACGACGACGACACGTCAACGATAAAAAAAAAGAAGAAAAAAAATTGTAATTGCCTAATTGTTGTTGTTGTTGCAATTTGTGTGATTATTTTTGTTTCTTTTTTTACGTTTGTGTTTTCATTTTTGTAATTGTTTTTCGGTTTATCCCAACAGATACGTTCTGGTCTGGCCGAGTTGGAATTAAGATCGTCACAAGTGCTGCA
**************************************************....(((.(((((......))))).))).........(((.((.(((....))).))((..((((...))))..))........((((((((((.((((..((((((((..((((((..........))))))...)))))))))))).))))))))))((((...(((....)))...)))).........))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
 M020
head
 V117
male body
............................................................................................................................................................................................................................................................................................ATTAAGATCGTCACAAGTGCTGCA 24 0 1 1.00 1 1 0 0 0 0
................................................................................................GTATTTGCTGACGACGACCACACGT........................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0
..................................................................................................................................................................................................................................................................ATACGTTCTGGTCTGGCC................................ 18 0 1 1.00 1 0 0 0 1 0
.............................GCCGAAATAGCCGCCTCCA.................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................ATTAAGATCGTCACAAGT...... 18 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................TCTGGTCTGGCCGAGTTGGA........................ 20 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................GGCCGAGTTGGAATTAAGATCGTCACA......... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................GCTGACGACGACGACACG............................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
..............................................................................................GCGTATTTGCTGACGACGAC.................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
.......GCAGGAATCGGCGCCAGCAATGGCCGAA................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
TAAGGGAGCAGGAATCGGCG................................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 0 1 0 0 0
.....GAGCAGGAAGGGGCGCCGGC........................................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1
...............................................................................................................................................................CTAATCGTTGTTGGGGTTGC................................................................................................................................. 20 3 20 0.10 2 0 0 1 0 1

Anti-sense strand reads

GGTTCCTCGTCCTTAGCCGCGGTCGTTACCGGCTTTATCGGCGGAGGTCGCATTCTTATTCTTGGATATAAAAAAAAGGAGAGGTAAGGCAAGGCGCATAAACGACTGCTGCTGCTGTGCAGTTGCTATTTTTTTTTCTTCTTTTTTTTAACATTAACGGATTAACAACAACAACAACGTTAAACACACTAATAAAAACAAAGAAAAAAATGCAAACACAAAAGTAAAAACATTAACAAAAAGCCAAATAGGGTTGTCTATGCAAGACCAGACCGGCTCAACCTTAATTCTAGCAGTGTTCACGACGT
**************************************************....(((.(((((......))))).))).........(((.((.(((....))).))((..((((...))))..))........((((((((((.((((..((((((((..((((((..........))))))...)))))))))))).))))))))))((((...(((....)))...)))).........))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
........................................................................................................................................................................................................................................................CAGGGTTGTCTATGCGAGA......................................... 19 2 1 1.00 1 1 0
.........................................................................................................................................................................................................................................................AGGGTTGTCGATGCGAGA......................................... 18 2 3 0.33 1 0 1
............................................................................................GGCGGTTAAACGACTGCT...................................................................................................................................................................................................... 18 2 20 0.05 1 0 1
.........................................................................................................................................................................................................................................................AGGGTTGTCGATGCGAGAA........................................ 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004515:195103-195410 + dwi_1030 CCAAGGAGCAGG---------AA--TCGGCGCCAGCAATGGCCGAAATAGCCGCCTCCAGCGTAAGAATAAGAACCTATATTTT--------TTTTCCTCTCCATTCCGTTC--------------------------------CG--C-------------------GTATTTGCTGACGACGACG----ACACGTCAACGATAAAAAAAAAGAAGAAAAAAAATTGTAATTGCC-----TA------------------------AT---T-------------G---TTGTTGTT-----------------------------------------------------GTTGCAATTTGTGTGATTATTTTTGTTTCTTTTTTTACGTTTG--TG--------------------------------------TTTTCATTTT--------------------------------TGTAATTGTTTTTCGG---------------------------------TTTATCCC-------AACAGATACGTTCTGGTCTGGCCGAGTTGGAATTAAGATCGTCACAAGTGCTGCA
droVir3 scaffold_12970:2323727-2323946 + dvi_12910 G----------------------------CTCCAGCAGTGGCAGAAATCGCTGCGTCCAGCGTAAGTTG---------------------------------------------------------------------------------------------------GCATTTGATGACGACGACG-ACGACACGTCAACGCATTATT-------------------------A------TTATTATTGATTT------------------------------------------------------------------------TATGGCTG------------------------------------CTGTTGTTGTTGC----------TGTTGTTG-------TTGTTGTTGTTGT---------------------------------------------------------TGC----------------------------TGA--TGCCTGCTTTATTTGTTTACA------ACTTAGATACGCTCCGGCTTGGCTGAACTGGAGCTGCGCTCCAGTCAGGTGCTGCA
droMoj3 scaffold_6473:13085015-13085293 - GCG-GCG-GC------------G--GCAACACCAGCAGTGGCTGAAATCGCCGCATCCAGCGTAAGTTG------------TTG------------------------------------------------------------------------------------GCATTTGATGACGACGACG-AAGACACGTCAACGTCAAC------------------------------------------------------------G----T-------------C---TTGTTGTTT-----------------TGATAGTGTTTAGAGTTGCGGCAATTGTTGTTGTTGTTTCTGTTGTTGCGGCTCTCTCTCTCTCTC---T----------CTCTC-------TCT-------------------------CTCTCACTGATTGCTGCTGTTGTTAATAATA-------------------------------------A----TAA---------------TGTTTTAC-------TTTAGATACGCTCCGGCCTGGCTGAGTTGGAGCTGCGCTCCTCTCAGATGCTGCA
droGri2 scaffold_15203:592454-592732 - ACA-GCA-GC--------AACAACGACAACATTACCAGTGGCTGAAATCGCCGCATCCAGCGTAAGTTT------------TGC---------------------------------------------------------------------------TG-------GCAC-TTCTGATGACGACG-AAGACACGTCAACGTGTTGTG-------------------------GTTTTTGTTTTTATTATATGTTATATGGA---------------------------------------------------------------------------------------------------------TTTCTTTGTTTTTGTTTT----------TTCTT-------TCT-------------------------TTTTTATTGG--------------------------------TGCAATTACCATGCGACTTATCATCAA----TCA--TGCGTGCCGTGCTTGTTAACG--GCCATTTTAGATACGTTCCGGTTTGGCGGAGCTGGAGCTGCGCTCATCTCAGGTGCTCCA
dp5 XL_group1e:1833072-1833237 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTGACGACGACGGAAGACACGTCAACGCAAGGCG-------------------------ACGAGCGCTGTTATCGTCTCTTGTTTACATCTCCGCTGTTTTTCTCTTATTTTGCATTCATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTATC------GTGCAGATTCGTTCGGGATTGGCCGAGCTGGAGCTCAGATCGTCCCAGGTCCTGCA
droPer2 scaffold_18:683634-683893 - -------------------------TCGACGCCAGCGGTGGCCGAAATAGCCGCTTCTAGTGTGAGTAG------------TTC----------TTTCCCCCCGATTCTCTCTG---------------------------T--GTGTTTTTCTC-CGCTGGCTTCTTCGATTTGCTGACGACGACGGAAGACACGTCAACGCAAGGCG-------------------------ACGAGCGCTGTTATCGTCTCTTGTTTACATCTCCGCTGTTTTTCTCTTATTTTGCATTCATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTATC------GTGCAGATTCGTTCGGGATTGGCCGAGCTGGAGCTCAGATCGTCCCAGGTCCTGCA
droAna3 scaffold_13337:2164772-2164937 + ACG-TCA-AC--------------------------A---------------------------------------------------------------------------------------------------------------------------------------------ACGAAGAAGAAGAAGATGAAAAAACCGGGC------------------------TGGGAAACAAGTTTCTTGTTGCTGGCTGATGTTGTTGTTGTTTTTGTTTTG------------------TTTGTG------TAC-----------------------------------------------------------------------------TGTTTTTG-------TTGTTGTTGTTGTTGTCCATCA-------------------------------------------------------------------------------------------------------CA------TCTCAGTTTTTTTTGGGTGTAACCGAAATTAATAT---------------------
droBip1 scf7180000396355:16471-16603 - TTT-----------CC----------------------TTGTTGGAGTTGTCGTTTTA---------------------------T----------------TTGTTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTCTTGTTTGTTTTTTTGTGCGTTGATTTTTTAATATTATGTTCTTG---------------------------------------------------------------TAAT-------------------------------------------TGTTTGGT------TTAAAA-----TTTCGGTTT-----GGTTAAAATTAAAATTTCCAC----------
droKik1 scf7180000302344:68444-68694 + TTATGGCGCCGGACCCCGGCCCC--TCAACGCCAGCGGTGTCCGAAATAGCCGCCTCCAGTGTGAGTTT--------------CG------------------------ATT-C--------GT----------GGAGATT------------CTTTGCC------TTCATTTTGCTGACGACGACGGAAGACACGTCAACTTCTC-------------------------------------------------------------AGCGGTTT----------------TTTTGTTTACTTTTTG------GGC----------------------------------------------------------------------------------------------------------------C--CCGGG----------------------CTAATGATAGTAATGTTAAT--T--------------------------GA-----------------TTGCTAACC-----ATGTTAGATACGCTCTGGACTGGCGGAGCTGGAGCTGCGCTCCTCGCAGGTGCTGCA
droFic1 scf7180000454077:644865-645091 + GC-------------------AA--TCGACGCCAGCAGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCCACTTCGTTTTT--------TTCTGTGTTCTT-------C--TC--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTTT------------------------------------------------------------AA---G-------------------TTTGTTTACCTTTCGATTTTA----------------------------------------------------------------------------------------------------------------------ACCGC----------------------CAA---------------------------------------A--------------------------TATTCACC------A-TTAGATACGATCGGGACTGGCCGAGCTAGAACTGCGATCCTCGCAAGTGCTACA
droEle1 scf7180000490214:718334-718569 - A---------------------A--TCGACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGC------------TTTAT-----AATTTTC---CTCATTTTATCTTCTCCTCTCTTCTC---TCCT-------ATTTT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTAT------------------------------------------------------------GG---TTT----------TG---CCGTTGTTTACATTTTAAAGTTA----------------------------------------------------------------------------------------------------------------------ACC------------------------------AAA---------------------------------AC------------TG-----------TACAATCC-------AACAGATTCGTTCTGGCCTGGCCGAGCTGGAGCTGCGCTCCTCGCAGGTTCTGCA
droRho1 scf7180000761121:86028-86231 - ----------------------A--TCAACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGC------------TTTAT-----TTTTTCCTC--------------------------------------------AT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTGTGC------------------------------------------------------------GG---T-------------T---TCGTTGTTTACCTTTCTAAGTTA----------------------------------------------------------------------------------------------------------------------ACC--------------------------A---------------------------------------ACTATACGA------------------TATCCAAC-------AATAGATTCGATCCGGCCTGGCCGAGCTTGAGCTGCGATCGTCACAGGTTCTGCA
droBia1 scf7180000302187:337068-337290 - A---GGAGCCGGATCCGGGCCAA--TCGACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGT------------TC-------------------------TCTCTT---------------------------T---T--TTTCTTC-C-----------GTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------T---CCGTTGTTTACCCAGCC------CAC----------------------------------------------------------------------------------------------------------------T-TG----------------------------A---------------------------------------ACCATTTCA-----------------CATCCAACC------ATGTAGATTCGATCCGGCCTGGCCGAGCTGGAGCTGCGCTCCTCGCAGGTGCTGCA
droTak1 scf7180000415158:249778-250025 - CCA-GGAGCCGGATCCGGGGCCA--TCGACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTTTAC----------TTTGTATTTTTTTTTTCGCCCTGGTTCTGCTTC--------TTCTT---TCCC-------T--TC--T-------------------GGTTTTGGTGACGACGACGGAAGACACGTCAACTTTGGG------------------------------------------------------------AT---T-------------GGGATTCTTGTTTACTTATCC------CAC----------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------------------------------------------------------AACGTTGTCTTTATAGATTCGTTCCGGCCTGGCCGAGCTGGAGCTGCGATCCTCCCAGGTGCTGCA
droEug1 scf7180000408193:282021-282256 - CTG---------ATGCGGACCAA--TCGACGACAGCGGTGGCCGAAATCGCGGCTTCCAGTGTGAGTGT------------TCCGT-----GT-TTTCGCCCTGCTTCTTTCTT-------------------------------T--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------A---ATGTTGTTTACCTTCCC------AAC----------------------------------------------------------------------------------------------------------------T-TGCCGC----------------------CTA---------------------------------------ACTAG----TCAATCC-----------TATCCTCT------ATTTAGATTCGATCGGGCCTGGCCGAGCTGGAGCTGCGATCCTCGCAAGTGCTGCA
dm3 chrX:21195551-21195786 + G-----------ATCCGGGCCAA--TCAACGCCAGCGGTGGCCGAAATCGCCGCTTCCAGTGTGAGTGT------------TTGGT-----TTTTTTCGCCCTGCTTCTATCTT---------------------------T--TT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---CTGTTGTTTACCTTGTC------CAC----------------------------------------------------------------------------------------------------------------TATCCCAC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TATTCGCC------ACATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCTTCGCAGGTGCTGCA
droSim2 x:19928382-19928615 + dsi_4686 G-----------ATCCGGGCCAA--TCAACGCCAGCGGTGGCCGAAATAGCCGCTTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCTGCTTCTATCTT-------------------------------T--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---GTGTTGTTTACCTTGTC------CAC----------------------------------------------------------------------------------------------------------------TATGCCGC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TCTTCGCC------ACATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCTTCGCAGGTGCTGCA
droSec2 scaffold_11973:17-116 - AGA-ATG-AT------------A--AT------------------AA----------------------------------T------------------TCTGATTTCTA----------------------------------------------------------------------------------------------------------------------------------TTATTGTTATATT----------------------T-------------CTGGTAATTATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------TCTGATTTGTTT------------------------------------------
droYak3 X:20373022-20373245 + ----------------------A--TCAACGCCAGCGGTGGCCGAAATCGCCGCTTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCTGCTTCTTTCTT------------------------------TT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---CTGTTGTTTACCTTGTC------TAC----------------------------------------------------------------------------------------------------------------TTTGCCGC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TATTTACC------TTATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCCTCGCAGGTGCTGCA
droEre2 scaffold_4690:17726175-17726395 + ----------------------A--TCAACGCCAGCGGTGGCCGAAATCGCCGCTTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCTGCTTCTTTT--------------------------------TT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTG-------------------------------------------------------------AG---C-------------G---CTGTTGTTTATCTTGTC------GAC----------------------------------------------------------------------------------------------------------------TATGCCGC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TATTCATC------ACATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCCTCGCAGGTGCTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCAAGGAGCAGG---------AA--TCGGCGCCAGCAATGGCCGAAATAGCCGCCTCCAGCGTAAGAATAAGAACCTATATTTT--------TTTTCCTCTCCATTCCGTTC--------------------------------CG--C-------------------GTATTTGCTGACGACGACG----ACACGTCAACGATAAAAAAAAAGAAGAAAAAAAATTGTAATTGCC-----TA------------------------AT---T-------------G---TTGTTGTT-----------------------------------------------------GTTGCAATTTGTGTGATTATTTTTGTTTCTTTTTTTACGTTTG--TG--------------------------------------TTTTCATTTT--------------------------------TGTAATTGTTTTTCGG---------------------------------TTTATCCC-------AACAGATACGTTCTGGTCTGGCCGAGTTGGAATTAAGATCGTCACAAGTGCTGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGATCGTCACAAGTGCTGCA2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTTCTGGTCTGGCC................................1811.00110000
........................................GCCGAAATAGCCGCCTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGATCGTCACAAGT......1811.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTCTGGCCGAGTTGGA........................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGTTGGAATTAAGATCGTCACA.........2711.00100010
..............................................................................................................................................................................GCTGACGACGACG----ACACG.................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................................................................................................................................................G--C-------------------GTATTTGCTGACGACGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.......GCAGG---------AA--TCGGCGCCAGCAATGGCCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
droVir3
G----------------------------CTCCAGCAGTGGCAGAAATCGCTGCGTCCAGCGTAAGTTG---------------------------------------------------------------------------------------------------GCATTTGATGACGACGACG-ACGACACGTCAACGCATTATT-------------------------A------TTATTATTGATTT------------------------------------------------------------------------TATGGCTG------------------------------------CTGTTGTTGTTGC----------TGTTGTTG-------TTGTTGTTGTTGT---------------------------------------------------------TGC----------------------------TGA--TGCCTGCTTTATTTGTTTACA------ACTTAGATACGCTCCGGCTTGGCTGAACTGGAGCTGCGCTCCAGTCAGGTGCTGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCTCCGGCTTGGCTGAACTGG.........................2511.001000000000000000000000000000000000000000000000000000000000000010
..............................................................TAAGTTG---------------------------------------------------------------------------------------------------GCATTTGATGACGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
G----------------------------CTCCAGCAGTGGCAGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCTCCGGCTTGGCTG...............................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTG-------TTGTTGTTGTTGT---------------------------------------------------------TGC----------------------------TG......................................................................................21200.153000000000000000000000000000000000000000000000000000000000000030
..................................................................................................................................................................................................................................................................................................................................................................................CTGTTGTTGTTGC----------TGTTGTT.....................................................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTG-------TTGTTGTTGTTGT---------------------------------------------------------.......................................................................................................................18200.051000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTGTTGT---------------------------------------------------------TGC----------------------------TGA--T..................................................................................19200.051000010000000000000000000000000000000000000000000000000000000000
droMoj3
GCG-GCG-GC------------G--GCAACACCAGCAGTGGCTGAAATCGCCGCATCCAGCGTAAGTTG------------TTG------------------------------------------------------------------------------------GCATTTGATGACGACGACG-AAGACACGTCAACGTCAAC------------------------------------------------------------G----T-------------C---TTGTTGTTT-----------------TGATAGTGTTTAGAGTTGCGGCAATTGTTGTTGTTGTTTCTGTTGTTGCGGCTCTCTCTCTCTCTC---T----------CTCTC-------TCT-------------------------CTCTCACTGATTGCTGCTGTTGTTAATAATA-------------------------------------A----TAA---------------TGTTTTAC-------TTTAGATACGCTCCGGCCTGGCTGAGTTGGAGCTGCGCTCCTCTCAGATGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGGAGCTGCGCTCCTCT...........2211.001100000
droGri2
ACA-GCA-GC--------AACAACGACAACATTACCAGTGGCTGAAATCGCCGCATCCAGCGTAAGTTT------------TGC---------------------------------------------------------------------------TG-------GCAC-TTCTGATGACGACG-AAGACACGTCAACGTGTTGTG-------------------------GTTTTTGTTTTTATTATATGTTATATGGA---------------------------------------------------------------------------------------------------------TTTCTTTGTTTTTGTTTT----------TTCTT-------TCT-------------------------TTTTTATTGG--------------------------------TGCAATTACCATGCGACTTATCATCAA----TCA--TGCGTGCCGTGCTTGTTAACG--GCCATTTTAGATACGTTCCGGTTTGGCGGAGCTGGAGCTGCGCTCATCTCAGGTGCTCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCGGAGCTGGAGCTGCG..................2211.00101
dp5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTGACGACGACGGAAGACACGTCAACGCAAGGCG-------------------------ACGAGCGCTGTTATCGTCTCTTGTTTACATCTCCGCTGTTTTTCTCTTATTTTGCATTCATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTATC------GTGCAGATTCGTTCGGGATTGGCCGAGCTGGAGCTCAGATCGTCCCAGGTCCTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGGATTGGCCGAGCTGGAGCT.....................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGGCCGAGCTGGAGCTCAGAT................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGGATTGGCCGAGCTGGAGC......................2511.0010100000000
droPer2
-------------------------TCGACGCCAGCGGTGGCCGAAATAGCCGCTTCTAGTGTGAGTAG------------TTC----------TTTCCCCCCGATTCTCTCTG---------------------------T--GTGTTTTTCTC-CGCTGGCTTCTTCGATTTGCTGACGACGACGGAAGACACGTCAACGCAAGGCG-------------------------ACGAGCGCTGTTATCGTCTCTTGTTTACATCTCCGCTGTTTTTCTCTTATTTTGCATTCATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTATC------GTGCAGATTCGTTCGGGATTGGCCGAGCTGGAGCTCAGATCGTCCCAGGTCCTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCAGATCGTCCCAGGTC.....2111.001100000
droAna3
ACG-TCA-AC--------------------------A---------------------------------------------------------------------------------------------------------------------------------------------ACGAAGAAGAAGAAGATGAAAAAACCGGGC------------------------TGGGAAACAAGTTTCTTGTTGCTGGCTGATGTTGTTGTTGTTTTTGTTTTG------------------TTTGTG------TAC-----------------------------------------------------------------------------TGTTTTTG-------TTGTTGTTGTTGTTGTCCATCA-------------------------------------------------------------------------------------------------------CA------TCTCAGTTTTTTTTGGGTGTAACCGAAATTAATAT---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................TGTTGCTGGCTGATGTTG...........................................................................................................................................................................................................................................................................................................................................18180.061001000
......A-AC--------------------------A---------------------------------------------------------------------------------------------------------------------------------------------ACGAAGAAGAAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................19180.061010000
..........................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTG-------TTGTTGTTGTTGTT...............................................................................................................................................................................21200.051000010
droBip1
TTT-----------CC----------------------TTGTTGGAGTTGTCGTTTTA---------------------------T----------------TTGTTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTCTTGTTTGTTTTTTTGTGCGTTGATTTTTTAATATTATGTTCTTG---------------------------------------------------------------TAAT-------------------------------------------TGTTTGGT------TTAAAA-----TTTCGGTTT-----GGTTAAAATTAAAATTTCCAC----------SizeHit CountTotal NormTotal
No Reads
droKik1
TTATGGCGCCGGACCCCGGCCCC--TCAACGCCAGCGGTGTCCGAAATAGCCGCCTCCAGTGTGAGTTT--------------CG------------------------ATT-C--------GT----------GGAGATT------------CTTTGCC------TTCATTTTGCTGACGACGACGGAAGACACGTCAACTTCTC-------------------------------------------------------------AGCGGTTT----------------TTTTGTTTACTTTTTG------GGC----------------------------------------------------------------------------------------------------------------C--CCGGG----------------------CTAATGATAGTAATGTTAAT--T--------------------------GA-----------------TTGCTAACC-----ATGTTAGATACGCTCTGGACTGGCGGAGCTGGAGCTGCGCTCCTCGCAGGTGCTGCASizeHit CountTotal NormTotal
No Reads
droFic1
GC-------------------AA--TCGACGCCAGCAGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCCACTTCGTTTTT--------TTCTGTGTTCTT-------C--TC--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTTT------------------------------------------------------------AA---G-------------------TTTGTTTACCTTTCGATTTTA----------------------------------------------------------------------------------------------------------------------ACCGC----------------------CAA---------------------------------------A--------------------------TATTCACC------A-TTAGATACGATCGGGACTGGCCGAGCTAGAACTGCGATCCTCGCAAGTGCTACASizeHit CountTotal NormTotal
No Reads
droEle1
A---------------------A--TCGACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGC------------TTTAT-----AATTTTC---CTCATTTTATCTTCTCCTCTCTTCTC---TCCT-------ATTTT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTAT------------------------------------------------------------GG---TTT----------TG---CCGTTGTTTACATTTTAAAGTTA----------------------------------------------------------------------------------------------------------------------ACC------------------------------AAA---------------------------------AC------------TG-----------TACAATCC-------AACAGATTCGTTCTGGCCTGGCCGAGCTGGAGCTGCGCTCCTCGCAGGTTCTGCASizeHit CountTotal NormTotal
No Reads
droRho1
----------------------A--TCAACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGC------------TTTAT-----TTTTTCCTC--------------------------------------------AT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTGTGC------------------------------------------------------------GG---T-------------T---TCGTTGTTTACCTTTCTAAGTTA----------------------------------------------------------------------------------------------------------------------ACC--------------------------A---------------------------------------ACTATACGA------------------TATCCAAC-------AATAGATTCGATCCGGCCTGGCCGAGCTTGAGCTGCGATCGTCACAGGTTCTGCASizeHit CountTotal NormTotal
No Reads
droBia1
A---GGAGCCGGATCCGGGCCAA--TCGACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTGT------------TC-------------------------TCTCTT---------------------------T---T--TTTCTTC-C-----------GTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------T---CCGTTGTTTACCCAGCC------CAC----------------------------------------------------------------------------------------------------------------T-TG----------------------------A---------------------------------------ACCATTTCA-----------------CATCCAACC------ATGTAGATTCGATCCGGCCTGGCCGAGCTGGAGCTGCGCTCCTCGCAGGTGCTGCASizeHit CountTotal NormTotal
No Reads
droTak1
CCA-GGAGCCGGATCCGGGGCCA--TCGACGCCAGCGGTGGCCGAAATCGCCGCCTCCAGTGTGAGTTTAC----------TTTGTATTTTTTTTTTCGCCCTGGTTCTGCTTC--------TTCTT---TCCC-------T--TC--T-------------------GGTTTTGGTGACGACGACGGAAGACACGTCAACTTTGGG------------------------------------------------------------AT---T-------------GGGATTCTTGTTTACTTATCC------CAC----------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------------------------------------------------------AACGTTGTCTTTATAGATTCGTTCCGGCCTGGCCGAGCTGGAGCTGCGATCCTCCCAGGTGCTGCASizeHit CountTotal NormTotal
No Reads
droEug1
CTG---------ATGCGGACCAA--TCGACGACAGCGGTGGCCGAAATCGCGGCTTCCAGTGTGAGTGT------------TCCGT-----GT-TTTCGCCCTGCTTCTTTCTT-------------------------------T--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------A---ATGTTGTTTACCTTCCC------AAC----------------------------------------------------------------------------------------------------------------T-TGCCGC----------------------CTA---------------------------------------ACTAG----TCAATCC-----------TATCCTCT------ATTTAGATTCGATCGGGCCTGGCCGAGCTGGAGCTGCGATCCTCGCAAGTGCTGCASizeHit CountTotal NormTotal
No Reads
dm3
G-----------ATCCGGGCCAA--TCAACGCCAGCGGTGGCCGAAATCGCCGCTTCCAGTGTGAGTGT------------TTGGT-----TTTTTTCGCCCTGCTTCTATCTT---------------------------T--TT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---CTGTTGTTTACCTTGTC------CAC----------------------------------------------------------------------------------------------------------------TATCCCAC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TATTCGCC------ACATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCTTCGCAGGTGCTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................TTTGCTGACGACGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGCGGAGCTGGAGCTGCG..................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CGCCGCTTCCAGTGTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGATCGGGCCTGGCGG...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGCTGCGATCTTCGCAGGT......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..........................CAACGCCAGCGGTGGCCGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGGAGCTGGAGCTGCGATCTT.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCGGAGCTGGAGCTG....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGGCGGAGCTGGAGC......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................GCTGACGACGACGGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAGCTGGAGCTGCGAT................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGGAGCTGGAGCTGCG..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGCGATCTTCGCA.........1911.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATAGATTCGATCGGGCC.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATCGGGCCTGGCGGAGCTGGA........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................GCTTCCAGTGTGAGTGT------------TTGGT-----T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCGGAGCTGGAGCTGCGA.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................GACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---CTGT...............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCCTGGCGGAGCTGGAGCTG....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGAGCTGGAGCTGCG..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................ACGCCAGCGGTGGCCGAAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................A--TCAACGCCAGCGGTGGCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGCGGAGCTGGAGCTGC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GCCGCTTCCAGTGTGAGTGT------------TTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................CTGACGACGACGGAAGACACG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TGTTTACCTTGTC------CAC----------------------------------------------------------------------------------------------------------------TATCC....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GACACGTCAACTTCTGG------------------------------------------------------------AG---.....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAACGCCAGCGGTGGCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATCGGGCCTGGCGGA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................TCCAGTGTGAGTGT------------TTGGT-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGCGGAGCTGGAGCT.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGCCTGGCGGAGCTGGAGCT.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................T---------------------------T--TT--T-------------------TTTTTTGCTGACGACGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TTGCTGACGACGACGGAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAACGCCAGCGGTGGCCGAAATCGCCGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
G-----------ATCCGGGCCAA--TCAACGCCAGCGGTGGCCGAAATAGCCGCTTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCTGCTTCTATCTT-------------------------------T--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---GTGTTGTTTACCTTGTC------CAC----------------------------------------------------------------------------------------------------------------TATGCCGC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TCTTCGCC------ACATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCTTCGCAGGTGCTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................GCTGACGACGACGGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
................................................................................................................................................................................................CACGTCAACTTCTGG------------------------------------------------------------AG---C-------------.......................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
droSec2
AGA-ATG-AT------------A--AT------------------AA----------------------------------T------------------TCTGATTTCTA----------------------------------------------------------------------------------------------------------------------------------TTATTGTTATATT----------------------T-------------CTGGTAATTATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------TCTGATTTGTTT------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................TGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATGT.................................................................................................................................................................................27160.1322000
...............................................................................................................................................................................................................................................................................................................TGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTC.......................................................................................................................................................................................21160.1322000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------TC....................................................28170.1222000
..........................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATG..................................................................................................................................................................................21170.1222000
.................................................................................................................................................................................................................................................................................................................AT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCT.....................................................................................................................................................................................21170.1222000
........................................................................................................................................................................................................................................................TATATT----------------------T-------------CTGGTAATTATTTTGAT------TAT-----------------------------------------------------------------------------............................................................................................................................................................................................................2790.1111000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------......................................................26200.1022000
.........................................................................................................................................................................................................................................................................................................TTATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------.............................................................................................................................................................................................21200.1022000
............................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------TCTGATT...............................................24110.0911000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTT----------------------------------------------------------------------------------------------------------TGTTCACT--------TCTGATTTGT............................................21110.0911000
.............................................................................................................................................................................................................................................................................................................TTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATG..................................................................................................................................................................................28160.0611000
................................................................................................................................................................................................................................................................................................................GAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATG..................................................................................................................................................................................25160.0611000
................................................................................................................................................................................................................................................................................................................GAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCC......................................................................................................................................................................................21160.0611000
...............................................................................................................................................................................................................................................................................................................TGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------......................................................................28160.0611000
..........................................................................................................................................................................................................................................................................................................TATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCC......................................................................................................................................................................................27160.0611000
............................................................................................................................................................................................................................................................................................................TTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCC......................................................................................................................................................................................25160.0611000
...............................................................................................................................................................................................................................................................................................................TGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTAT...................................................................................................................................................................................25160.0611000
.........................................................................................................................................................................................................................................................................................................TTATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCC......................................................................................................................................................................................28160.0611000
...............................................................................................................................................................................................................................................................................................................TGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATG..................................................................................................................................................................................26160.0611000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGT...................................................................24170.0611000
.........................................................................................................................................................................................................................................................................................................TTATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------C............................................................................................................................................................................................22170.0611000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------......................................................29170.0611000
..........................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TG....................................................................22170.0611000
.........................................................................................................................................................................................................................................................................................................................TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTTCCTATGT.................................................................................................................................................................................23170.0611000
..........................................................................................................................................................................................................................................................................................................TATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------C............................................................................................................................................................................................21170.0611000
..............................................................................................................................................................................................................................................................................................................TTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGTT........................................................................................................................................................................................21170.0611000
...........................................................................................................................................................................................................................................................................................................ATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------C............................................................................................................................................................................................20170.0611000
.............................................................................................................................................................................................................................................................................................................TTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CTGT.........................................................................................................................................................................................21170.0611000
..........................................................................................................................................................................................................................................................................................................TATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCCC-------CT...........................................................................................................................................................................................22170.0611000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGT...................................................................21200.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TG....................................................................21200.0511000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------T.....................................................27200.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------T.....................................................28200.0511000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------TCTGA.................................................25200.0511000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGTTCACT--------T.....................................................21200.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTCCC-------CTGTTCCTATGTT----------------------------------------------------------------------------------------------------------TGT...................................................................22200.0511000
.........................................................................................................................................................................................................................................................................................................TTATTTTGAT------TAT-----------------------------------------------------------------------------TGTTTCC.....................................................................................................................................................................................................20200.0511000
droYak3
----------------------A--TCAACGCCAGCGGTGGCCGAAATCGCCGCTTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCTGCTTCTTTCTT------------------------------TT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTGG------------------------------------------------------------AG---C-------------G---CTGTTGTTTACCTTGTC------TAC----------------------------------------------------------------------------------------------------------------TTTGCCGC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TATTTACC------TTATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCCTCGCAGGTGCTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATCGGGCCTGGCGGAGCTGGA........................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGCTGGAGCTGCGATCCTCGCA.........2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATCGGGCCTGGCGGAGCT...........................2311.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGGAGCTGGAGCTGCG..................1911.00100000010000
........................................GCCGAAATCGCCGCTTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEre2
----------------------A--TCAACGCCAGCGGTGGCCGAAATCGCCGCTTCCAGTGTGAGTGT------------TTCGT-----GTTTTTCGCCCTGCTTCTTTT--------------------------------TT--T-------------------TTTTTTGCTGACGACGACGGAAGACACGTCAACTTCTG-------------------------------------------------------------AG---C-------------G---CTGTTGTTTATCTTGTC------GAC----------------------------------------------------------------------------------------------------------------TATGCCGC----------------------CTA---------------------------------------ATTAG----CCA--TG-----------TATTCATC------ACATAGATTCGATCGGGCCTGGCGGAGCTGGAGCTGCGATCCTCGCAGGTGCTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATCGGGCCTGGCGG...............................1811.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGCGGAGCTGGAGCTGC...................2111.0011000000
........................................GCCGAAATCGCCGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010

Generated: 05/18/2015 at 12:26 AM