ID:

dwi_10

 Coordinate:

scf2_1100000004902:9825599-9825656 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.5 -39.0

Flybase annnotation

intron [Dwil\GK10950-in]; utr5 [utr5_plus_9305]

No Repeatable elements found

Sense Strand Reads

AAGTGCATAAGCATAATCTAAAGTGGCTTGAGAACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAAAGCCACGACCCACCAAAGTGTTAG

***********************************(((((.....(((((((.((((((((..((((((((((((.....))).)))))))))..)))))))).)))))))....)))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V119

head

 V118

embryo

 V117

male body		 M020

head

 M045

female body
..................................................AAATTGACTCTAGTAGGGAGT....................................................................................... 21 0 1 97883.00 97883 85424 8392 3418 487 162
..................................................AAATTGACTCTAGTAGGGAGTC...................................................................................... 22 0 1 18888.00 18888 10329 7645 614 139 161
......................................................................................CTCCCTAACGGAGTCAGATTG................................................... 21 0 1 2505.00 2505 2162 89 9 93 152
..................................................AAATTGACTCTAGTAGGGAGTCT..................................................................................... 23 1 1 1953.00 1953 1057 781 54 6 55
..................................................AAATTGACTCTAGTAGGGAGTCA..................................................................................... 23 1 1 1464.00 1464 1140 248 47 2 27
..................................................AAATTGACTCTAGTAGGGAG........................................................................................ 20 0 1 843.00 843 485 48 72 214 24
...................................................AATTGACTCTAGTAGGGAGT....................................................................................... 20 0 1 452.00 452 372 50 11 2 17
..................................................AAATTGACTCTAGTAGGGAGTCG..................................................................................... 23 1 1 365.00 365 277 36 21 5 26
..................................................CAATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 347.00 347 343 1 3 0 0
..................................................AAATTGAATCTAGTAGGGAGT....................................................................................... 21 1 1 314.00 314 310 2 1 0 1
..................................................AAATTGACTATAGTAGGGAGT....................................................................................... 21 1 1 296.00 296 287 9 0 0 0
..................................................AAATTGACTCTAGCAGGGAGT....................................................................................... 21 1 1 245.00 245 220 16 8 1 0
..................................................AAATTGACTCTAGTAGGGAGC....................................................................................... 21 1 1 207.00 207 166 14 6 19 2
.......................................................................................TCCCTAACGGAGTCAGATTGA.................................................. 21 0 1 191.00 191 142 23 0 22 4
..................................................TAATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 187.00 187 183 4 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCC..................................................................................... 23 0 1 184.00 184 113 57 10 2 2
..................................................AAATTGACTCTAGTATGGAGT....................................................................................... 21 1 1 163.00 163 131 32 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 161.00 161 144 8 8 1 0
..................................................AGATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 154.00 154 138 7 6 3 0
.................................................CAAATTGACTCTAGTAGGGAGT....................................................................................... 22 0 1 145.00 145 123 12 7 0 3
..................................................AAATTGACTCTAGTAAGGAGT....................................................................................... 21 1 1 142.00 142 136 3 3 0 0
..................................................AAATTGACTCTAGTAGGAAGT....................................................................................... 21 1 1 138.00 138 131 3 4 0 0
..................................................AAATTGACCCTAGTAGGGAGT....................................................................................... 21 1 1 138.00 138 129 6 2 1 0
..................................................AAATTGACTCTAGAAGGGAGT....................................................................................... 21 1 1 130.00 130 126 0 3 1 0
....................................................ATTGACTCTAGTAGGGAGT....................................................................................... 19 0 1 128.00 128 105 15 5 2 1
..................................................AAATTGACTCTAGTAGGGAAT....................................................................................... 21 1 1 127.00 127 126 1 0 0 0
..................................................AAATTGACTCTAGTGGGGAGT....................................................................................... 21 1 1 122.00 122 117 5 0 0 0
..................................................AAATTAACTCTAGTAGGGAGT....................................................................................... 21 1 1 122.00 122 120 1 1 0 0
..................................................AAATTGACTCTAGTAGAGAGT....................................................................................... 21 1 1 116.00 116 110 6 0 0 0
..................................................AAATTGACTCCAGTAGGGAGT....................................................................................... 21 1 1 115.00 115 103 9 3 0 0
..................................................AAATCGACTCTAGTAGGGAGT....................................................................................... 21 1 1 113.00 113 103 7 3 0 0
..................................................AAATTGACTCTAGGAGGGAGT....................................................................................... 21 1 1 109.00 109 103 4 1 1 0
..................................................AAATTGACTCTAGTAGGGGGT....................................................................................... 21 1 1 109.00 109 99 9 1 0 0
..................................................GAATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 108.00 108 103 2 3 0 0
..................................................AAATTGGCTCTAGTAGGGAGT....................................................................................... 21 1 1 101.00 101 89 9 3 0 0
..................................................AAATTGACTCTAATAGGGAGT....................................................................................... 21 1 1 100.00 100 93 3 1 3 0
..................................................AAATTGATTCTAGTAGGGAGT....................................................................................... 21 1 1 100.00 100 95 2 3 0 0
..................................................AAATTTACTCTAGTAGGGAGT....................................................................................... 21 1 1 99.00 99 84 12 2 0 1
..................................................AAATTGACTCTAGTCGGGAGT....................................................................................... 21 1 1 99.00 99 89 8 2 0 0
..................................................AAATTCACTCTAGTAGGGAGT....................................................................................... 21 1 1 98.00 98 87 9 2 0 0
..................................................AAACTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 97.00 97 89 8 0 0 0
..................................................AAATTGACTCTAGTAGTGAGT....................................................................................... 21 1 1 95.00 95 78 17 0 0 0
..................................................AAATTGACTCTAGTAGGTAGT....................................................................................... 21 1 1 92.00 92 69 16 3 4 0
..................................................AAATTGACTCTAGTAGGGCGT....................................................................................... 21 1 1 89.00 89 76 11 2 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGA.................................................. 22 0 1 88.00 88 35 29 0 5 19
..................................................ACATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 86.00 86 77 8 1 0 0
..................................................AAATTGACTCTAGTAGGGA......................................................................................... 19 0 1 86.00 86 43 14 21 3 5
..................................................AAATTGACTCTACTAGGGAGT....................................................................................... 21 1 1 85.00 85 73 6 5 1 0
...................................................AATTGACTCTAGTAGGGAGTC...................................................................................... 21 0 1 83.00 83 46 23 0 2 12
..................................................AAATTGACTCTATTAGGGAGT....................................................................................... 21 1 1 82.00 82 72 10 0 0 0
..................................................AAATTGACTCTCGTAGGGAGT....................................................................................... 21 1 1 80.00 80 75 3 2 0 0
..................................................AAATTGACTCTGGTAGGGAGT....................................................................................... 21 1 1 79.00 79 72 5 2 0 0
..................................................AAATTGACTCTAGTAGGGAGA....................................................................................... 21 1 1 77.00 77 75 2 0 0 0
..................................................AAATTGACTCTAGTACGGAGT....................................................................................... 21 1 1 76.00 76 72 2 1 0 1
..................................................AAATTGACTCTAGTAGGGAGG....................................................................................... 21 1 1 68.00 68 35 3 3 27 0
..................................................AACTTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 67.00 67 63 4 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTA...................................................................................... 22 1 1 66.00 66 54 12 0 0 0
.......................................................................................TCCCTAACGGAGTCAGATTG................................................... 20 0 1 61.00 61 35 3 0 2 21
................................................TCAAATTGACTCTAGTAGGGAGT....................................................................................... 23 0 1 60.00 60 46 13 0 1 0
..................................................AAATTGACTCTAGCAGGGAGTC...................................................................................... 22 1 1 58.00 58 36 20 2 0 0
..................................................AAATTGACTCTAGTAGGGATT....................................................................................... 21 1 1 56.00 56 48 7 0 1 0
..................................................AAATTGACTCTAGTAGGCAGT....................................................................................... 21 1 1 55.00 55 50 1 4 0 0
..................................................AAATTGACTTTAGTAGGGAGT....................................................................................... 21 1 1 54.00 54 47 6 1 0 0
..................................................AAATTGACTCTAGTAGGGACT....................................................................................... 21 1 1 52.00 52 48 3 1 0 0
..................................................AAATTGACTCTAGTAGCGAGT....................................................................................... 21 1 1 49.00 49 45 1 2 1 0
..................................................AAATTGACTCTAGTAGGGT......................................................................................... 19 1 1 47.00 47 32 14 1 0 0
..................................................AAATTGACTATAGTAGGGAGTC...................................................................................... 22 1 1 45.00 45 28 17 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTC...................................................................................... 22 1 1 44.00 44 40 4 0 0 0
..................................................AAATTGACTCTAGTATGGAGTC...................................................................................... 22 1 1 41.00 41 12 29 0 0 0
..................................................CAATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 41.00 41 41 0 0 0 0
..................................................AAAATGACTCTAGTAGGGAGT....................................................................................... 21 1 1 34.00 34 30 1 2 1 0
..................................................AAATTGACTCTATTAGGGAGTC...................................................................................... 22 1 1 34.00 34 12 21 1 0 0
..................................................AAATTGACTCTAGTAGGGAGTT...................................................................................... 22 1 1 32.00 32 25 3 3 0 1
...................................................AAATTACTCTAGTAGGGAGT....................................................................................... 20 2 1 32.00 32 26 5 1 0 0
..................................................AAATTGACACTAGTAGGGAGT....................................................................................... 21 1 1 32.00 32 31 1 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGT....................................................................................... 21 1 1 31.00 31 23 6 2 0 0
..................................................AAATTGACTCTAGTAGTGAGTC...................................................................................... 22 1 1 29.00 29 10 17 1 0 1
..................................................AAATTGACTCTAGTAAGGAGTC...................................................................................... 22 1 1 29.00 29 19 8 2 0 0
..................................................AAATTGACTCTAGTTGGGAGT....................................................................................... 21 1 1 28.00 28 26 1 1 0 0
..................................................AAATTAACTCTAGTAGGGAGTC...................................................................................... 22 1 1 27.00 27 24 3 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTT..................................................................................... 23 2 1 27.00 27 17 4 5 0 1
..................................................AAATTGACTCTAGTAGGGAGTCTT.................................................................................... 24 1 1 27.00 27 12 13 1 0 1
..................................................AAATTGACTCAAGTAGGGAGT....................................................................................... 21 1 1 27.00 27 25 0 2 0 0
..................................................ATATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 26.00 26 25 0 1 0 0
..................................................AAATTGACTCCAGTAGGGAGTC...................................................................................... 22 1 1 26.00 26 12 13 1 0 0
..................................................AAATTGATTCTAGTAGGGAGTC...................................................................................... 22 1 1 26.00 26 18 7 1 0 0
..................................................AAATAGACTCTAGTAGGGAGT....................................................................................... 21 1 1 25.00 25 24 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCC...................................................................................... 22 1 1 24.00 24 13 10 1 0 0
..................................................TAATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 24.00 24 23 1 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTC...................................................................................... 22 1 1 24.00 24 9 13 0 2 0
..................................................AAATTGGCTCTAGTAGGGAGTC...................................................................................... 22 1 1 23.00 23 16 6 0 0 1
..................................................AAATTGACTCTAATAGGGAGTC...................................................................................... 22 1 1 23.00 23 20 3 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 23.00 23 19 2 1 0 1
..................................................AAATTGACTCTAGTAGGAAGTC...................................................................................... 22 1 1 23.00 23 15 7 1 0 0
..................................................AAATCGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 22.00 22 13 7 2 0 0
..................................................GAATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 22.00 22 21 1 0 0 0
..................................................AAATTGACTCTAGAAGGGAGTC...................................................................................... 22 1 1 22.00 22 20 2 0 0 0
.......................................................................................TCCCTAACGGAGTCAGATTGAA................................................. 22 0 1 22.00 22 10 8 0 2 2
..................................................AAATTGACTCTAGTATGGAG........................................................................................ 20 1 1 21.00 21 14 6 1 0 0
..................................................AAATTGACCCTAGTAGGGAGTC...................................................................................... 22 1 1 21.00 21 15 6 0 0 0
..................................................AAATTTACTCTAGTAGGGAGTC...................................................................................... 22 1 1 21.00 21 11 10 0 0 0
..................................................AAATTGACTCTAGTAGAGAGTC...................................................................................... 22 1 1 20.00 20 15 4 1 0 0
..................................................AAATTGACTCTAGTAGGGTGT....................................................................................... 21 1 1 20.00 20 17 0 3 0 0
..................................................AAATTGACTCTAGTAGGGATTC...................................................................................... 22 1 1 20.00 20 7 7 0 6 0
..................................................AAATTGACTCTAGTGGGGAGTC...................................................................................... 22 1 1 20.00 20 15 4 1 0 0
..................................................AGATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 19.00 19 15 4 0 0 0
....................................................ATTGACTCTAGTAGGGAGTC...................................................................................... 20 0 1 18.00 18 7 6 0 4 1
..................................................AAATTGACTCTAGTAGGGAATC...................................................................................... 22 1 1 18.00 18 16 2 0 0 0
..................................................AAATTGACTCTTGTAGGGAGT....................................................................................... 21 1 1 17.00 17 17 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAC........................................................................................ 20 1 1 16.00 16 0 0 0 16 0
..................................................AAATTGACTCTAGTAGGG.......................................................................................... 18 0 1 16.00 16 13 1 0 1 1
..................................................AAATTGACTCTGGTAGGGAGTC...................................................................................... 22 1 1 16.00 16 9 7 0 0 0
..................................................AATTTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 16.00 16 16 0 0 0 0
.........................................................................................CCTAACGGAGTCAGATTGA.................................................. 19 0 1 15.00 15 12 1 1 1 0
......................................................................................CTCCCTAACGGAGTCAGATT.................................................... 20 0 1 15.00 15 4 0 0 6 5
..................................................AAATTGACTCTACTAGGGAGTC...................................................................................... 22 1 1 15.00 15 11 4 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTC...................................................................................... 22 1 1 14.00 14 9 5 0 0 0
..................................................AAATTGACTCTAGTAGGGAGAC...................................................................................... 22 1 1 13.00 13 12 1 0 0 0
..........................................................................................CTAACGGAGTCAGATTGA.................................................. 18 0 1 13.00 13 7 1 0 5 0
..................................................AAATTGACTCTAGTAGCGAGTC...................................................................................... 22 1 1 13.00 13 10 2 1 0 0
..................................................ACATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 13.00 13 8 5 0 0 0
..................................................AAATTGACTCTAGTAGGCAGTC...................................................................................... 22 1 1 13.00 13 10 3 0 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGAA................................................. 23 0 1 12.00 12 6 2 0 3 1
..................................................AAACTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 12.00 12 6 4 2 0 0
..................................................AAATTGACTCTAGGAGGGAGTC...................................................................................... 22 1 1 12.00 12 10 2 0 0 0
..................................................AAATTGACTCTAGTCGGGAGTC...................................................................................... 22 1 1 12.00 12 8 4 0 0 0
..................................................AAATTGACTTTAGTAGGGAGTC...................................................................................... 22 1 1 11.00 11 9 2 0 0 0
......................................................................................CTCCCTAACGGATTCAGATTG................................................... 21 1 1 11.00 11 3 0 0 8 0
......................................................................................CTCCCTAACGGAGTCAGAT..................................................... 19 0 1 11.00 11 0 0 0 10 1
..................................................AAATTGTCTCTAGTAGGGAGT....................................................................................... 21 1 1 11.00 11 9 1 1 0 0
..................................................AAATTCACTCTAGTAGGGAGTC...................................................................................... 22 1 1 10.00 10 5 3 0 2 0
......................................................................................CTCCCTAACGGAGTAAGATTG................................................... 21 1 1 10.00 10 10 0 0 0 0
.....................................................TTGACTCTAGTAGGGAGT....................................................................................... 18 0 1 10.00 10 5 2 1 0 2
..................................................AAATTGACTGTAGTAGGGAGT....................................................................................... 21 1 1 10.00 10 9 1 0 0 0
......................................................................................CTCCCTAACGTAGTCAGATTG................................................... 21 1 1 10.00 10 1 0 0 9 0
..................................................AAATTGACTCTAGTAGGGAGTAA..................................................................................... 23 2 1 9.00 9 8 0 0 0 1
......................................................................................CTCCCTAACGGAGCCAGATTG................................................... 21 1 1 9.00 9 7 0 0 1 1
..................................................AAATTGACTCTAGTAGGGAGTCTA.................................................................................... 24 2 1 9.00 9 4 5 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTC...................................................................................... 22 1 1 9.00 9 5 4 0 0 0
...................................................AAATGACTCTAGTAGGGAGT....................................................................................... 20 1 1 9.00 9 9 0 0 0 0
..................................................AACTTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 9.00 9 3 5 1 0 0
..................................................AAATTGACTCTAGTAGGGAGTTA..................................................................................... 23 2 1 8.00 8 6 0 0 0 2
...................................................AAATTACTCTAGTAGGGAGTC...................................................................................... 21 2 1 8.00 8 4 0 4 0 0
......................................................................................CTCCCTAACGCAGTCAGATTG................................................... 21 1 1 8.00 8 1 0 0 7 0
..................................................AAATTGACACTAGTAGGGAGTC...................................................................................... 22 1 1 8.00 8 6 2 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGTC...................................................................................... 22 1 1 7.00 7 4 3 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTC...................................................................................... 22 1 1 7.00 7 5 0 2 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGAT................................................. 23 1 1 7.00 7 3 0 0 4 0
......................................................................................ATCCCTAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 7 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCGT.................................................................................... 24 1 1 7.00 7 6 1 0 0 0
..................................................AAATTGACTCTAGTAGGGACTC...................................................................................... 22 1 1 7.00 7 5 1 0 1 0
......................................................................................CTCCCTAAAGGAGTCAGATTG................................................... 21 1 1 7.00 7 7 0 0 0 0
..................................................AAATTGACTCAAGTAGGGAGTC...................................................................................... 22 1 1 7.00 7 6 1 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCT..................................................................................... 22 1 1 7.00 7 2 3 0 0 2
..................................................AAATTGACTCCAGTAGGGAGTCT..................................................................................... 23 2 1 6.00 6 3 3 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTG..................................................................................... 23 2 1 6.00 6 2 0 1 3 0
......................................................................................CTCCCTAACGGAGACAGATTG................................................... 21 1 1 6.00 6 4 1 0 1 0
..................................................AAATTGACTCTAGTACGGAGTC...................................................................................... 22 1 1 6.00 6 6 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTGTC...................................................................................... 22 1 1 6.00 6 4 2 0 0 0
..................................................AAATTGACTCTAGTAGGGAGGC...................................................................................... 22 1 1 6.00 6 3 0 2 1 0
..................................................AAATTGACTCTCGTAGGGAGTCA..................................................................................... 23 2 1 5.00 5 3 1 0 0 1
..................................................AAATTGACTCTAGCAGGGAGTCT..................................................................................... 23 2 1 5.00 5 4 1 0 0 0
......................................................................................CTCCCTAACGGAGTCAGACTG................................................... 21 1 1 5.00 5 5 0 0 0 0
..................................................AAATAGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 4 1 0 0 0
..................................................AAAATGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 3 1 1 0 0
.................................................CAAATTGACTCTAGTAGGGAGTC...................................................................................... 23 0 1 5.00 5 3 2 0 0 0
..................................................AAATTGACTCTAGTATGGAGTCA..................................................................................... 23 2 1 5.00 5 5 0 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCC..................................................................................... 22 0 1 5.00 5 3 1 0 0 1
......................................................................................CTCCCTAACGGACTCAGATTG................................................... 21 1 1 5.00 5 1 0 0 4 0
......................................................................................CTACCTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 4 0 0 0 1
..................................................AAATTGACTCTAGTTGGGAGTC...................................................................................... 22 1 1 5.00 5 3 2 0 0 0
..................................................CAATTGACTCTAGTAGGGAGTCT..................................................................................... 23 2 1 5.00 5 5 0 0 0 0
......................................................................................CTCACTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 5 0 0 0 0
..................................................AAATTGTCTCTAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 4 1 0 0 0
..................................................AAATTGACTCTAGCAGGGAGTCA..................................................................................... 23 2 1 5.00 5 5 0 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTCT..................................................................................... 23 2 1 5.00 5 5 0 0 0 0
..................................................AAATTGAGTCTAGTAGGGAGT....................................................................................... 21 1 1 5.00 5 4 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCCT..................................................................................... 23 2 1 5.00 5 3 2 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTAT..................................................................................... 23 2 1 5.00 5 5 0 0 0 0
..................................................AAATTGACTGTAGTAGGGAGTC...................................................................................... 22 1 1 4.00 4 0 2 0 2 0
..................................................AAATTGAATCTAGTAGGGAG........................................................................................ 20 1 1 4.00 4 4 0 0 0 0
......................................................................................CTCCCTAACGGCGTCAGATTG................................................... 21 1 1 4.00 4 4 0 0 0 0
...................................................AAATGACTCTAGTAGGGAGTC...................................................................................... 21 1 1 4.00 4 3 1 0 0 0
..................................................AAATTGACTCTAGTAGTGAGTCT..................................................................................... 23 2 1 4.00 4 1 3 0 0 0
..................................................AAATTGACTCTAGTAGGAAGTCT..................................................................................... 23 2 1 4.00 4 4 0 0 0 0
...................................................GATTGACTCTAGTAGGGAGT....................................................................................... 20 1 1 4.00 4 4 0 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCG..................................................................................... 22 1 1 4.00 4 1 0 0 0 3
......................................................................................TTCCCTAACGGAGTCAGATTG................................................... 21 1 1 4.00 4 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCAA.................................................................................... 24 2 1 4.00 4 1 1 0 0 2
......................................................................................CTCCCTAACGGAGTCAGATTGT.................................................. 22 1 1 4.00 4 1 0 0 2 1
..................................................AAATTGACTCTAGTAGGGAGTCTTT................................................................................... 25 1 1 4.00 4 0 3 0 0 1
...................................................AATTTACTCTAGTAGGGAGT....................................................................................... 20 1 1 4.00 4 3 1 0 0 0
....................................................ATTGACTCTAGTAGGGAG........................................................................................ 18 0 1 4.00 4 0 1 0 3 0
......................................................................................CTCCCTAACTGAGTCAGATTG................................................... 21 1 1 4.00 4 2 0 0 2 0
..................................................AAATTGACTCTAGTAGGGGGTCA..................................................................................... 23 2 1 4.00 4 3 0 1 0 0
..................................................AAATGGACTCTAGTAGGGAGT....................................................................................... 21 1 1 4.00 4 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTGT..................................................................................... 23 2 1 4.00 4 1 0 0 2 1
..................................................AAATTGAATATAGTAGGGAGT....................................................................................... 21 2 1 4.00 4 4 0 0 0 0
..................................................AAATTAACTCTAGTAGGGAGTCT..................................................................................... 23 2 1 4.00 4 3 1 0 0 0
..................................................AAATTGACTCTAGTAGGT.......................................................................................... 18 1 1 4.00 4 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTCT..................................................................................... 23 2 1 4.00 4 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCTAT................................................................................... 25 2 1 4.00 4 4 0 0 0 0
......................................................................................CTCCCTAACGGAATCAGATTG................................................... 21 1 1 4.00 4 4 0 0 0 0
........................................................................................CCCTAACGGAGTCAGATTGA.................................................. 20 0 1 4.00 4 3 0 0 0 1
...................................................AATTGACTCTAGTAGGGAGTCA..................................................................................... 22 1 1 4.00 4 2 0 0 0 2
..................................................ATATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 4.00 4 3 1 0 0 0
..................................................AAATTGACTATAGTAGGGAGTCT..................................................................................... 23 2 1 4.00 4 2 2 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 4.00 4 3 1 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTCA..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCGAGTAGGGAGT....................................................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGTCT..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
....................................................ATTGACTCTAGTAGGGAGTCA..................................................................................... 21 1 1 3.00 3 2 0 0 0 1
..................................................AAATTGACTCTAGTAGGGAATCA..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTTGTAGGGAGTC...................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTCT..................................................................................... 23 2 1 3.00 3 2 1 0 0 0
......................................................................................CACCCTAACGGAGTCAGATTG................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAT........................................................................................ 20 1 1 3.00 3 1 1 1 0 0
..................................................AAATTGACTCTAGTCGGGAGTCT..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTAGGAGGGAGTCA..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
.......................................................................................TCCCTAACGGAGTCAGATTGAAA................................................ 23 1 1 3.00 3 1 1 0 1 0
....................................................AATTACTCTAGTAGGGAGT....................................................................................... 19 2 1 3.00 3 3 0 0 0 0
...................................................AATTGACTCTAGTAGTGAGT....................................................................................... 20 1 1 3.00 3 3 0 0 0 0
...................................................CATTGACTCTAGTAGGGAGT....................................................................................... 20 1 1 3.00 3 3 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGGTTG................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTATT.................................................................................... 24 2 1 3.00 3 2 0 1 0 0
..................................................AAATTGACTATAGTAGAGAGT....................................................................................... 21 2 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCAT.................................................................................... 24 1 1 3.00 3 3 0 0 0 0
......................................................................................CTCCATAACGGAGTCAGATTG................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................................................CTCCCTAACGGGGTCAGATTG................................................... 21 1 1 3.00 3 1 0 0 0 2
......................................................................................CTCCCTAACGGAGTCCGATTG................................................... 21 1 1 3.00 3 3 0 0 0 0
............................TGAGAACTTCCTGCGGCAGTTC............................................................................................................ 22 0 1 3.00 3 0 1 0 2 0
......................................................................................CTCCCTAACGGAGTCATATTG................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTAGCAGGGAGC....................................................................................... 21 2 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTCTAGTGGGGAGTCT..................................................................................... 23 2 1 3.00 3 2 1 0 0 0
......................................................................................CTCCCTAACGTAGTCAGATTGA.................................................. 22 1 1 3.00 3 0 0 0 3 0
.......................................................................................TCCCTAACGGAGTCAGATTGAAT................................................ 23 0 1 3.00 3 0 0 0 3 0
..................................................AAATTGACTCTAGTAGGGGG........................................................................................ 20 1 1 3.00 3 0 0 0 3 0
......................................................................................CTCCCTAACGGAGTCAGATCG................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................................................CTCCCTAACGAAGTCAGATTG................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................TAATTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
....................................................AATGACTCTAGTAGGGAGT....................................................................................... 19 1 1 3.00 3 3 0 0 0 0
..................................................TAATTGACTCTAGTAGGGAGTCT..................................................................................... 23 2 1 3.00 3 2 0 1 0 0
..................................................AAATTGACTCTAGTAAGGAGTCT..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
..................................................AAATTGACTATAGTAGGGAG........................................................................................ 20 1 1 3.00 3 3 0 0 0 0
......................................................................................CTCCCTGACGGAGTCAGATTG................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................................................CTCCCTAATGGAGTCAGATTG................................................... 21 1 1 3.00 3 2 0 0 0 1
.................................................AAAATTGACTCTAGTAGGGAGT....................................................................................... 22 1 1 3.00 3 1 1 0 0 1
..................................................AATTTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................AAATTCACTCTAGTAGGGAG........................................................................................ 20 1 1 3.00 3 2 0 0 1 0
......................................................................................CTCCCTAACGGAGTCGGATTG................................................... 21 1 1 3.00 3 2 0 0 0 1
..................................................AAATTGACTCTAGTAGGGAGTG...................................................................................... 22 1 1 3.00 3 1 1 1 0 0
..................................................AAATTGACTATAGTAGGGAGTCA..................................................................................... 23 2 1 3.00 3 3 0 0 0 0
..................................................AAATTAACTATAGTAGGGAGT....................................................................................... 21 2 1 3.00 3 3 0 0 0 0
.......................................................................................TCCCTAACGGAGTCAGATTGG.................................................. 21 1 1 2.00 2 0 0 0 2 0
..................................................CAATTGACTCTAGTAGGGAG........................................................................................ 20 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGCAGC....................................................................................... 21 2 1 2.00 2 1 1 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTCGTAGGGCGT....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
..................................................AACTTGACTCTAGCAGGGAGT....................................................................................... 21 2 1 2.00 2 1 1 0 0 0
................................................TCAAATTGACTCTAGAAGGGAGT....................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCCAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGA...................................................... 18 0 1 2.00 2 0 0 0 0 2
..................................................AAAATGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................AAATCGACTCTAGTAGAGAGT....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
..................................................GAATTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 1 1 0 0 0
..................................................CAATTGACTCTAGAAGGGAGTC...................................................................................... 22 2 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTGGTAGGGGGT....................................................................................... 21 2 1 2.00 2 1 0 1 0 0
...................................................AATTGACTCTAGTATGGAGTC...................................................................................... 21 1 1 2.00 2 1 1 0 0 0
..................................................AAATTGGCTCTAGTAGGGAG........................................................................................ 20 1 1 2.00 2 2 0 0 0 0
......................................................................................GTCCCTAACGGAGTCAGATTGA.................................................. 22 1 1 2.00 2 0 0 0 2 0
..................................................AGATTGACTCTAGTAAGGAGT....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
..................................................AAATTGAATCTAGTAGGGGGT....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGAAC................................................ 24 1 1 2.00 2 0 0 0 2 0
..................................................AAATCGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 1 0 0 0 1
..................................................AGATTGACTCTAGTAGGGAG........................................................................................ 20 1 1 2.00 2 1 0 0 1 0
..................................................AAATTGACCCTAGTAGGGAGTCT..................................................................................... 23 2 1 2.00 2 1 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGGCT..................................................................................... 23 2 1 2.00 2 1 1 0 0 0
..................................................TAATTGACTCTAGTAGGGAG........................................................................................ 20 1 1 2.00 2 2 0 0 0 0
..................................................AGATTGACTATAGTAGGGAGT....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
..................................................AAATAGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................AAACTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
...................................................AATTCACTCTAGTAGGGAGT....................................................................................... 20 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTGGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 1 0 0 0 1
......................................................................................CTCCCCAACGGAGTCAGATTG................................................... 21 1 1 2.00 2 1 1 0 0 0
..................................................AAATTGACTCTAGTATGGAGTCT..................................................................................... 23 2 1 2.00 2 1 1 0 0 0
..................................................AAATTGACGCTAGTAGGGAGT....................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTTT.................................................................................... 24 2 1 2.00 2 2 0 0 0 0
.......................................................................................TCCCTAAAGGAGTCAGATTGA.................................................. 21 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTAGTCGGGAGC....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
...................................................AATTGACTCTAGTAGGGATT....................................................................................... 20 1 1 2.00 2 2 0 0 0 0
.......................................................................................TCCCTAACGGAGTCAGATT.................................................... 19 0 1 2.00 2 1 0 0 1 0
..................................................AAACTGACTCTAGTAGGGAGTCT..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................ACATTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................AGATTGACTCTAGTAGGGAGTCT..................................................................................... 23 2 1 2.00 2 0 2 0 0 0
..................................................AAATTGACTCTATTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 1 1 0 0 0
......................................................................................CTCCCTAACGGATTCAGAT..................................................... 19 1 1 2.00 2 0 0 0 2 0
......................................................................................CTCCCTAACGGAGTCAGATTA................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................AAATTGACTCTAGCATGGAGT....................................................................................... 21 2 1 2.00 2 2 0 0 0 0
......................................................................................CTCCCTAACGGAGGCAGATTG................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................AAATTAACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 2.00 2 2 0 0 0 0

Anti-sense strand reads

TTCACGTATTCGTATTAGATTTCACCGAACTCTTGAAGGACGCCGTCAAGTTTAACTGAGATCATCCCTCAGGAAATATATTCGCTGAGGGATTGCCTCAGTCTAACTTAATGTTTCCTTGTTGTTGTTGTTTTTCGGTGCTGGGTGGTTTCACAATC

************************************(((((.....(((((((.((((((((..((((((((((((.....))).)))))))))..)))))))).)))))))....)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:9825549-9825706 - dwi_10 confident AAGTGC-----------------------AT---------AAGCATAATCT-----------A----------AA-------GTG--GCT----TGAG---------------------A-------ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCA--C-------GA-------CCCACCAAAGTGTTAG
droVir3 scaffold_12822:1418787-1418940 + dvi-mir-929 Known_mirbase TAAGAT-----------------------------------------------------CCAGGCC-------AA-------GTGCGACG----CG-T----------------------------GAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAAT--G-------TGCCAAGT-GAC---AAAGTGTTAA
droMoj3 scaffold_6540:34020265-34020417 + dmo_5 confident ACATAC-----------------------AT---------ACA-TATACGCTAC-------------------------------------------G----------------------------AGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGCGAG-------CA-CAAATGCAA---ATAATGGTAT
droGri2 scaffold_15074:2468157-2468322 - dgr_3 confident G--TCC--------------------TCAAACAATGTCCTC----------AAT-GTTATTTGA---------AA-------GTGTGCCC----CC-G---------------------A-------ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCA---G-------TG-------ATA---CAAGTGTTAC
dp5 2:24810808-24810965 - dps-mir-929 Known_mirbase AGGTGC-----------------------AT---------GCGCCCGATCC-----------G----------AAGTGC----------A----CG-G----------------------------CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGA--AAGACAAAGA----------ACCGAAGTG-TAG
droPer2 scaffold_6:111414-111571 - dpe_8 confident AGGTGC-----------------------AT---------GCGCCCGATCC-----------G----------AAGTGC----------A----CG-G----------------------------GATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAA--AAGACAAAGA----------ACCGAAGTG-TAG
droAna3 scaffold_13340:11127661-11127856 + dan_5 confident AAGTGA-----------------------GAAAATGTCCTG----------AAAAGTGTTCTGAGATG---CA-------GC-------TTCCCCA-GCCACCAACCAACCAACCAACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGG-------CC-------TAA---AAAGTGTTAG
droBip1 scf7180000396691:36333-36538 + AAGTGGCCAACATAAAGTGAATAAAGTGAGAAAATGTCCTG----------AAAAGGGTACTGAGATG---CG-------GC-------CTTCC--------------ACCAACCCACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTTG-------CC-------CAA---AAAGTGTTAG
droKik1 scf7180000302634:767715-767868 + GAGTGC-----------------------CC---------AA-----ATCG-----------A----------GA-------GTG--ACC----CGAG---------------------CAACGCCATGTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG-A---T-------TC-------CAG---AGAGTGTTAG
droFic1 scf7180000454096:1242528-1242669 + GAACGC-----------------------------------------------------GCCGACTTT---GA--------G-------------------------------------AAC----GACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGG--C-------TG-------CC-----AAGTGCTAG
droEle1 scf7180000491104:1857418-1857570 + GGGTAC-----------------------------------------------------TCCGAAAGAACCG-TGGAGCGAG-------------------------------------AAG----GACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAG--C-------TG-------CCG---AAAGTGTTAG
droRho1 scf7180000777910:14043-14192 - G--TGA-----------------------AT---------TAGTCT----------------TACATT---AC--GCG--AA-------------------------------------AAC----GACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAG--C-------TG-------CCA---AAAGTGTTAG
droBia1 scf7180000302098:364493-364632 - C----------------------------------------------------------TTTGACATA---AC-------AG-------------------------------------AAC----TAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAA--C-------TG-------CCA---AAAGTGTTAG
droTak1 scf7180000414441:35417-35559 - G--TTC-----------------------------------------------------CCTGACATA---AG-------AG-------------------------------------AAC----CAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAAT--C-------TT-------TAA---AAAGTGTTAG
droEug1 scf7180000409759:55720-55866 + AAGTCC------------------------T---------GTA----------------TCTGATATA---GA-------TG-------A----T------------------------AAC----A-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCAG--T-------TC-------TTA---AAAGTGTT--
dm3 chr3R:121051-121209 + dme-mir-929 Known_mirbase AAATCC-----------------------AT---------GTATGCAATCC----ATGCCCTGACATG---GC-------GG-------------------------------------AAC----C-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA---C-------TT-------AAA---AATGTGTTAG
droSim2 3r:105565-105706 + dsi-mir-929 Known_mirbase ACGTGC-----------------------------------------------------CCTGGCATG---GC-------GC-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---C-------TT-------AAA---AAGGTGTTAG
droSec2 scaffold_6:240411-240552 + dse_4 confident ACGTGC-----------------------------------------------------CCTGACATG---GC-------GC-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---C-------TT-------AAA---AAGGTGTTAG
droYak3 3R:481062-481225 + dya_11 confident A-GTGA-----------------------AA---------ACGCTATACATTAC-GTGCCTTGAAATG---GC-------AA-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA---C-------TA-------AAAAAAAATGTGTTAG
droEre2 scaffold_4770:471004-471164 + der_6 confident A-GTGA-----------------------AA---------AAGCCATACATTAC-GCGCCTTGAAGTG---GC-------GG-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA---C-------TT-------AAA---AAGGTGTTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAGTGC-----------------------AT---------AAGCATAATCT-----------A----------AA-------GTG--GCT----TGAG---------------------A-------ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCA--C-------GA-------CCCACCAAAGTGTTAGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................21197883.00978834871623418839285424
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22118888.0018888139161614764510329
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2112505.002505931529892162
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2311953.001953655547811057
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2311464.001464227472481140
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201843.00843214247248485
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................201452.004522171150372
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231365.003655262136277
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211207.00207192614166
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................211191.00191224023142
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231184.00184221057113
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................221145.0014503712123
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................191128.0012821515105
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................22188.008851902935
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................19186.008635211443
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................21183.008321202346
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21177.0077000275
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21168.00682703335
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22166.00660001254
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20161.00612210335
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGT........................................................................................................23160.00601001346
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................19147.00470011432
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22132.0032013325
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23127.0027015417
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAA..................................................................22122.0022220810
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20118.001841067
................................................................................................................................................AAATTGACTCTAGTAGGGAC.........................................................................................................20116.0016160000
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................18116.0016110113
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGA...................................................................19115.0015101112
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20115.001565004
........................................................................................................................................................................................CTAACGGAGTCAGATTGA...................................................................18113.001350017
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................23112.001231026
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAT......................................................................19111.0011101000
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................18110.001002125
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................2319.00901008
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.....................................................................................................2419.00900054
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................2318.00802006
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................2317.00740003
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2217.00702032
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTG......................................................................................................2316.00630102
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................2315.00500023
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................2215.00501013
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAT......................................................................................................2315.00500005
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCG......................................................................................................2214.00403001
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCAA.....................................................................................................2414.00402011
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2214.00421001
..................................................................................................................................................ATTGACTCTAGTAGGGAG.........................................................................................................1814.00430010
................................................................................................................................................AAATTGACTCTAGTAGGGAGTGT......................................................................................................2314.00421001
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................1814.00400004
......................................................................................................................................................................................CCCTAACGGAGTCAGATTGA...................................................................2014.00401003
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................2214.00402002
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCA......................................................................................................2113.00301002
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................2013.00300111
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.................................................................2313.00310011
..............................................................................................TGAG---------------------A-------ACTTCCTGCGGCAGTTC.............................................................................................................................2213.00320010
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAT.................................................................2313.00330000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................2213.00300111
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGG...................................................................2112.00220000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGA.......................................................................1812.00202000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAAC.................................................................2412.00220000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATT.....................................................................1912.00210001
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTA....................................................................2112.00200002
droVir3
TAAGAT-----------------------------------------------------CCAGGCC-------AA-------GTGCGACG----CG-T----------------------------GAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAAT--G-------TGCCAAGT-GAC---AAAGTGTTAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................21121160.0021160812426013739076391617227001931518321757637308248161002702325485216208600002120001000000000000108956380845209000000135141000001
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22113334.00133342353731750486391036110001481759423859473423149851278931255359104703800016830000000000100000003187487651600000003100000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2117094.0070945303793020000000052231714733057424648117671001156180100010200000000000000000001828694200000001000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2313781.003781027715317001410005682891813301972431482661612521224112010000073000000000000000000001053344001000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2311766.001766007030411100000192134751708676017924100113551200000004000000000000000000074772700000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................2011607.001607915178413020700009561336974450566521111811270200001600000000000000000111693101003000110000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221486.0048603431000000000035236297333058320000030110000000000000000000000000000145000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231418.00418004601940030000392614282521843470001110133100800001210000000000000000000351900000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231355.003550070003001000035281533302302569000001010010000020000000000000000000176400000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................201308.00308043111101302000050436205600000200200000004000000000000000000049811300100000000000000
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................181243.0024324527000000000009444530430000000000100000100000000000000000201126200000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................191225.002250782000000000095354416800000000000000001000000000000000000051183900000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211168.00168024930003030000867125701320000000200000000060000000000000000000213700000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................221115.0011500400011010000126213740917000000000010000000000000000000000000029800000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................201109.00109033900000000000151154087000000000000000000000000000000000000034100000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211108.001080100180002010000010010000000000000010000010000000000000000000166600000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................231107.0010700120000000000015449770711000000000000000000000000000000000000027400000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................19191.0091012000041100000021200020000000000000000100000000000000000000522200000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21182.0082023000000100003405200260000000000000000000000000000000000001381500000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................21170.0070022000010000006415530106000001200000000000000000000000000000119100000001000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21162.0062418000001010000000000000000000000000000000000000000000000000134300000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................19152.005203800107020000020010102000000100000000010000000000000000000014900000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20148.0048011240000000000000022004300000000100000000000000000000000000001000000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAG.........................................................................................................21138.003804200000000000610242031000000000010000000000000000000000000010100000000100000000
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................20136.003614200000000000100311030000000000000000000000000000000000000016400000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22134.003400200000000000230210030000000000000000000000000000000000010111800000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................23132.003200210000000000231102032000000000000000000000000000000000000013200000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20132.003205113000000000011370100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22131.00310011000000000073210300300000010000000000000000000000000000005400000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................22121.00210000000100000011012103600000000000000000000000000000000000003200000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.....................................................................................................24120.00200010000000000001133203300000000000000000000000000000000000002100000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................22120.00200040000000000021011002400010000001000000000000000000000000003000000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGG...........................................................................................................19120.00200410000000000020010100000000000000000000000000000000000000007300000001000000000
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................18218.5037014000000000000112001002000000000000000000000000000000000000016000000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................22118.00180000030000000000000001300000130001000002000000000000000000002200000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTG......................................................................................................23118.00180310010000000010110001300000000000000000000000000000000000005100000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAC.........................................................................................................20116.00163900000000000000000000000000000000000000000000000000000000004000000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................19115.00150050000000000020000001000000000000000000000000000000000000007000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................23114.00140060000000000011010100100000000000000000000000000000000000003000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTG.....................................................................................................24113.00130010000000000010021101100000000000000000000000000000000000004100000000000000000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTG....................................................................18113.00130010000000000003011002200000000000000000000000000000000000003000000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGG............................................................................................................18111.00110610000000000000000000200000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................23111.00110000000000000033010001200000000000000000000000000000000000001000000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................22110.00100060000000000000100001100000000000000000000000000000000000001000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................2119.0090000000000000010001101100000000000000000000000000000000000013000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................2019.0090100000000000020001000100000000000000000000000000000000000003100000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................2319.0090011000000000020000101000000000000000000000000000000000000003000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGA...........................................................................................................1818.0080320000000000000000000100000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTA....................................................................2118.0080000000000000001000001000000000000000000000000000000000000006000000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCC......................................................................................................2117.0070000000100000000100101300000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2217.0070100000000000000011002000000000000000000000000000000000000001100000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................2217.0070001000000000000101001000000000000000000000000000000000000003000000000000000000
...................................................................................................................................................TTGACTCTAGTAGGGAGTC.......................................................................................................1917.0070121000000000000000001000000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAT......................................................................1917.0071110000000000010000000000000000000000000000000000000000000001000000002000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAAA........................................................................................................2117.0070200000000000000000101100000000000000000000000000000000000002000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCAA.....................................................................................................2416.0060001000000000020010100100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTCT......................................................................................................2416.0060020000000000000110001000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCT......................................................................................................2116.0060000000000000010300000000000000001000001000000000000000000000000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTC....................................................................2116.0060000000000000002000000000000000000000000000000000000000000004000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTGT......................................................................................................2316.0060000000000000000100000300000000000000000000000000000000000002000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGC...........................................................................................................1816.0060400000000000000000000000000000000000001000000000000000000001000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCCT.....................................................................................................2415.0050000000000000020000001100000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATT.....................................................................1915.0050130000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGA..........................................................................................................2015.0050000000000000001011000000000000000000000000000000000000000002000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGG..........................................................................................................1915.0050100000000000000000000000000000000000000000000000000000000003100000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCCA.....................................................................................................2415.0050000000000000000001200100000010000000000000000000000000000000000000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTTT......................................................................................................2415.0050110000000000001110000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAG.........................................................................................................1815.0050040000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTC.....................................................................................................2414.0040000000000000000000100000000010101000000000000000000000000000000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................2314.0040000000000000001101100000000000000000000000000000000000000000000000000000000000
droMoj3
ACATAC-----------------------AT---------ACA-TATACGCTAC-------------------------------------------G----------------------------AGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGCGAG-------CA-CAAATGCAA---ATAATGGTATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................21117995.0017995242347425877363495063
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22112606.0012606350227322964771483840
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2117028.007028425528013708089
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2311765.001765999453979124101
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201755.0075564119636919106
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................231515.00515242172293717
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231252.002527461779211
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................221238.0023821037751293
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221190.00190463478671
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................211141.00141134536731
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231120.0012091346907
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211116.00116011722715
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................201112.00112420333502
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211109.001094121132221
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................191104.001041113039023
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................20189.00891501540217
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20163.0063701027190
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20156.0056200151902
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23156.005640182815
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................19146.004660121837
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................23145.00452135331
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22143.004301142314
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21139.003901112412
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................18132.00326091520
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................22126.00261091411
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................23124.00240051513
...................................................................................................................................................................................ACTCCCTAACGGAGTCAGATTGA...................................................................23124.00241301820
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................19124.00240031308
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22123.00230051440
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................21119.00190015400
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21118.0018105912
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCT......................................................................................................21114.0014007610
...................................................................................................................................................................................ACTCCCTAACGGAGTCAGATTG....................................................................22114.0014903200
...................................................................................................................................................TTGACTCTAGTAGGGAGTC.......................................................................................................19112.0012203070
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................22112.0012301620
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTG......................................................................................................23112.0012105600
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................22112.0012800310
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................23111.0011502310
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCC......................................................................................................21111.0011006401
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTA....................................................................21110.0010006400
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................23110.0010004600
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................1919.009601200
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................1817.007004300
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................1816.006101112
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................2016.006002301
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.....................................................................................................2416.006101400
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................2215.005010310
................................................................................................................................................AAATTGACTCTAGTAGGGAGTGT......................................................................................................2315.005005000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTCT......................................................................................................2415.005101030
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAT......................................................................1915.005100130
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATT.....................................................................1914.004002200
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2014.004101101
................................................................................................................................................AAATTGACTCTAGTAGGGAGGA.......................................................................................................2214.004001120
......................................................................................................................................................................................CCCTAACGGAGTCAGATTG....................................................................1914.004201100
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTC....................................................................2114.004100300
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................2214.004301000
droGri2
G--TCC--------------------TCAAACAATGTCCTC----------AAT-GTTATTTGA---------AA-------GTGTGCCC----CC-G---------------------A-------ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCA---G-------TG-------ATA---CAAGTGTTACSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................2113522.0035222163306
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................221739.00739264475
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201108.001085058
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................23169.00693633
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................20163.00632043
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................21137.0037334
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................19119.0019415
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................21119.0019163
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................23119.0019127
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................23116.001697
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22115.0015114
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................22112.0012111
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................19110.001037
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................2218.00817
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................1917.00743
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................2315.00532
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................1914.00413
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................2114.00404
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................1813.00330
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................2013.00321
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................2313.00321
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................2012.00220
...................................................................................................................................................TTGACTCTAGTAGGGAGTC.......................................................................................................1912.00211
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................2212.00211
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................2012.00211
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................2312.00220
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................2112.00211
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2012.00202
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................1812.00211
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................2111.00101
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCCT.....................................................................................................2311.00110
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGTC.......................................................................................................2411.00101
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................2211.00110
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.................................................................2311.00110
....................................................................................................................................................................................CTCCCTAACGGAGTCAGA.......................................................................1811.00110
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCCA.....................................................................................................2411.00110
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCT......................................................................................................2111.00110
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG..................................................................2211.00101
...................................................................................................................................................TTGACTCTAGTAGGGAGTCT......................................................................................................2011.00110
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................2211.00110
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG..................................................................2311.00101
...............................................................................................................................................CAAATTGACTCTAGTAGGGA..........................................................................................................2011.00110
........................................C----------AAT-GTTATTTGA---------AA-------GTGTGC.....................................................................................................................................................................................2111.00110
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2211.00110
dp5
AGGTGC-----------------------AT---------GCGCCCGATCC-----------G----------AAGTGC----------A----CG-G----------------------------CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGA--AAGACAAAGA----------ACCGAAGTG-TAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................2117708.0077081231179704887436313240217
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................2216817.00681704234207144914467290417
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2112256.002256145612116168576000
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201968.0096808510731071764126
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................231846.0084607350604658032005
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................231785.0078501004231660137004
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221739.0073904126146731002
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211216.0021604532221431000
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211197.0019701611095174000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231119.001190532172585000
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................201114.0011402521244922000
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................19182.00820131364710011
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20169.0069043000260000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................21154.005409026351001
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................19132.003207131191000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20130.003001128090000
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21127.002700366120000
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................18126.002602120200001
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................23126.002601713140000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22123.002302114060000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................23123.002302001182000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22121.002102021160000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23117.00170222092000
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................19117.001703111011000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22116.00160242080000
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21115.001500000150000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................22113.001301000030000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20112.001201101000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................23111.00110501140000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................22110.00100200080000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2219.0090700020000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCC......................................................................................................2117.0070011050000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................2316.0060102030000
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................1916.0060000051000
..................................................................................................................................................ATTGACTCTAGTAGGGAG.........................................................................................................1815.0050101030000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................2215.0050000230000
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................2014.0040000040000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTG....................................................................1814.0040000040000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................2214.0040000031000
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2014.0040001030000
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................1814.0040002011000
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGTC.......................................................................................................2414.0040002020000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................2214.0040000040000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAG.........................................................................................................2113.0030100020000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTCT......................................................................................................2413.0030002010000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCCT.....................................................................................................2413.0030001011000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAA..................................................................2213.0030000111000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGA...................................................................1913.0030000030000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAT......................................................................1913.0030012000000
.................................................................................................................................................AATTGACTCTAGTAGGGA..........................................................................................................1813.0030000030000
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................1813.0030000030000
...................................................................................................................................................TTGACTCTAGTAGGGAGTC.......................................................................................................1912.0020200000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................2312.0020100010000
................................................................................................................................................AAATTGACTCTAGTAGGGAC.........................................................................................................2012.0020002000000
................................................................................................................................................AAATTGACTCTAGTAGGTT..........................................................................................................1922.0040000040000
................................................................................................................................................AAATTGACTCTAGTAGGGATC........................................................................................................2112.0020002000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGC........................................................................................................2212.0020011000000
......................................................................................................................................................................................CCCTAACGGAGTCAGATTG....................................................................1912.0020200000000
droPer2
AGGTGC-----------------------AT---------GCGCCCGATCC-----------G----------AAGTGC----------A----CG-G----------------------------GATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAA--AAGACAAAGA----------ACCGAAGTG-TAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................21118343.0018343553216391365247632
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22114511.001451156454414590201223
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2113906.00390607541277250941
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2311722.00172201194781053171
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2311689.0016890811478112567
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................2011010.0010101111312508177
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221487.0048701513241470
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211220.00220070711375
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231196.001960104512426
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................201179.0017902051711
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................191114.00114036195333
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................201112.00112061285027
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................21167.00670008509
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22147.004700092810
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................19146.004600023410
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................21143.004320019220
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20142.004209014190
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21137.00371006300
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................23135.00350203264
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21132.00320005225
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22131.00310019201
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23127.002701051110
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCC......................................................................................................21120.00200007130
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................18120.00201007120
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22116.0016020446
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20115.00150202110
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................23111.0011000092
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................19111.0011000344
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2219.009000450
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................1919.009110250
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................2219.009000270
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................1818.008100160
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCT......................................................................................................2118.008000170
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................2217.007000070
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................2315.005000140
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTC.....................................................................................................2415.005000140
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2215.005010211
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2015.005010022
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAT......................................................................................................2315.005000050
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................2314.004000121
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTC....................................................................2114.004000130
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................2114.004000130
................................................................................................................................................AAATTGACTCTAGTAGGGAGAA.......................................................................................................2213.003000120
droAna3
AAGTGA-----------------------GAAAATGTCCTG----------AAAAGTGTTCTGAGATG---CA-------GC-------TTCCCCA-GCCACCAACCAACCAACCAACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGG-------CC-------TAA---AAAGTGTTAGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................21148433.0048433611081034399564938113
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22114519.00145195518048443511148687
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2115341.005341362121684463246
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2313204.00320414328361082241
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2311174.001174817437391681
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201963.009631750403162376
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................201830.0083030060119648
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231604.00604110117759356
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221593.005933100518242
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................191366.003660002572269
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................211340.003400001865257
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................191315.003151001310291
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................231297.002976019936155
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................191252.002524028359104
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................231245.002454008824129
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................181220.002201110107299
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211191.0019102002632113
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................181155.0015500059195
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211155.0015553085359
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................221117.00117000491355
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................23184.0084011122644
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20183.0083380012033
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21180.0080000232037
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTG......................................................................................................23173.0073100271530
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................21163.006383016036
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22150.005001017131
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................21148.00480003144
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20143.004316002205
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22128.002811121211
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20121.00210001614
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAT......................................................................................................23115.00150005010
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................22114.0014000716
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................19114.0014000806
................................................................................................................................................AAATTGACTCTAGTAGGGAGTGT......................................................................................................23113.0013000931
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................20113.0013000526
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................23112.0012100317
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTC....................................................................21111.0011000407
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................23110.0010030115
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTA....................................................................2119.009000009
.................................................................................................................................................AATTGACTCTAGTAGGGA..........................................................................................................1818.008300401
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................2318.008210302
........................................................................................................................................................................................CTAACGGAGTCAGATTGA...................................................................1818.008000206
................................................................................................................................................AAATTGACTCTAGTAGG............................................................................................................1718.008000800
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2017.007100510
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................2317.007000403
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGA...................................................................1917.007000007
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................1816.006000015
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................2216.006100104
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................2216.006000600
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2216.006110112
................................................................................................................................................AAATTGACTCTAGTAGGGAGTGA......................................................................................................2316.006100302
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2216.006100302
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCT......................................................................................................2115.005000401
...............................................................................................................................................CAAATTGACTCTAGTAGGG...........................................................................................................1915.005100112
................................................................................................................................................AAATTGACTCTAGTAGGTT..........................................................................................................1915.005000203
................................................................................................................................................AAATTGACTCTAGTAGGAGT.........................................................................................................20104.00400003235
droBip1
AAGTGGCCAACATAAAGTGAATAAAGTGAGAAAATGTCCTG----------AAAAGGGTACTGAGATG---CG-------GC-------CTTCC--------------ACCAACCCACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTTG-------CC-------CAA---AAAGTGTTAGSizeHit CountTotal NormTotal
No Reads
droKik1
GAGTGC-----------------------CC---------AA-----ATCG-----------A----------GA-------GTG--ACC----CGAG---------------------CAACGCCATGTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG-A---T-------TC-------CAG---AGAGTGTTAGSizeHit CountTotal NormTotal
No Reads
droFic1
GAACGC-----------------------------------------------------GCCGACTTT---GA--------G-------------------------------------AAC----GACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGG--C-------TG-------CC-----AAGTGCTAGSizeHit CountTotal NormTotal
No Reads
droEle1
GGGTAC-----------------------------------------------------TCCGAAAGAACCG-TGGAGCGAG-------------------------------------AAG----GACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAG--C-------TG-------CCG---AAAGTGTTAGSizeHit CountTotal NormTotal
No Reads
droRho1
G--TGA-----------------------AT---------TAGTCT----------------TACATT---AC--GCG--AA-------------------------------------AAC----GACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAG--C-------TG-------CCA---AAAGTGTTAGSizeHit CountTotal NormTotal
No Reads
droBia1
C----------------------------------------------------------TTTGACATA---AC-------AG-------------------------------------AAC----TAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAA--C-------TG-------CCA---AAAGTGTTAGSizeHit CountTotal NormTotal
No Reads
droTak1
G--TTC-----------------------------------------------------CCTGACATA---AG-------AG-------------------------------------AAC----CAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAAT--C-------TT-------TAA---AAAGTGTTAGSizeHit CountTotal NormTotal
No Reads
droEug1
AAGTCC------------------------T---------GTA----------------TCTGATATA---GA-------TG-------A----T------------------------AAC----A-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCAG--T-------TC-------TTA---AAAGTGTT--SizeHit CountTotal NormTotal
No Reads
dm3
AAATCC-----------------------AT---------GTATGCAATCC----ATGCCCTGACATG---GC-------GG-------------------------------------AAC----C-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA---C-------TT-------AAA---AATGTGTTAGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................211991581.0099158100001000000000120400541800100322218867854765226190366626129591144813984182430831216000110000000000000000001020410000010018103316002274000000000000313412421125234341166112101500000010007914293813934503952360042343214000001845110294317110249465249406809767598110276233391164157128128211759157472900100527622000002483100340073120442102646109411751611694911033003010044435914716613524131327340525901194416293816247881922421871059547778841721830181112802811075959722371441693371036284827723772743125132028924296182542842541923835660532113738971304851274101405416952184618410136920671031472212548150863631728866556451088914266177153616532694112555556616351374852962724842979174126706021800
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................221142586.0014258600005000000100300220661000321586312941258143813701627131525121621611277947371012000000000000000000000001102950010000004124036001081921200001110300112210350372313752029000000000050820021321183615153610181240000080005088295805631599740116703251371333821155643723200011122228151710038054500000354800200187470348408404142083002182000111400192614854215143156114482936311545359688091822198891602402444156884521750464342411165523158442481312252017255351461328079494510648120672831081488855850185651853916661676258661467046059246149729516039856147321602163101129532560121899252075139812933911689103200
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................21143028.004302800007320001023030023000130113618195394476401000000101000011110003712130000000000000000032101012000000431817901759221411012141376101560374547424248161701110222371258340000001000201000000011000000000005000406366017712734252622583212001041529000001163100000010000000000000000002382000100105000000004842016620075954526426171202382160284791227424512124858442021616294732107062402150835618848421192209815011033451533021132401319163282651310613201105407149634032400
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................20125804.002580400002000000000011010110103017361061381759511301051301314112300000000000000000000000000001200000000015011308000083100000001010062073121501652502322016000000000011100224151950402000002000004362168028644201762171281543931524054141000005283614000002102200000007001000600418514399032171101720030000342012617996921183151861532051951771020201260411294111712717837315326981061148118910321631178377225024211261118492329609127884641021472107863155103780741421290921951931734860210820
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................19116051.00160510000000000000000000000000000000000000000100000100100000000000000000000000000000000000000000000000000000000000000000157040000010000000000000000001010020000100000000000317301337310135009231360110000030000000000000000000000000001213000000010000000001114610103196015110000090010000000000000000000009012962334437150093012000118240780000315035227253311068911850307978810514013019000
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................20114181.0014181000001000000000100000000052703218121000000000021010010000000010000000000000000000000000000000000030000000000000000000002603010000000000000000020000110003410010000010000072606278716361838116000011192221000103000000000000008135212910000100010000000031544054711413901558121448114212531101117128052021220180532134857307343367486123412903315271078015418897481914162067731382893342420061052557474771333473142534531871240
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................22113456.001345600001810003032000011000000101622335451510000000210000001200000000000000000000000006524300002001212105351410518664369994424015003214142113706264290672811984920617100000000003010001000200000000000000003112245402083419356825366810121853000003130010000000000000000000000011295100120002000000002245000301073546012420200265131001002030012000000000014031524595803511300000061310000000101010000001722110000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22112165.0012165000020000000000600000000040186585861683142201100010001011100000000000000000000000000000001000000000020160100202310030000000001310702411001410000000000100000000015000000000000100826009141220119966717711874070000061010000001000000000020000200912001200030000000081052521004102023580112132111210001001010000000000127410256219314344016291609010011154524251000045121098636151177034056383679518618320129541500
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................23111505.00115050000000001000000000000600600000000012100413062210132000000000000000000000000000000000000000001310000019000000000000006810003150192192000000000003120002504141000000000000080531428031822470462193176371567720000001300001000020530000005000000000111331160043000100013300100922341487000931960691001118916000010051740002300211036003015196115179656145144501224513195214922103114140101010213107811889829694250004010
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2319059.0090590000000000000000000002200000000000022212127170001242000000000000000000000000000010000000001300502100035000000010000002900001110801012000000000050300252261380000000000000003082520203302772364116226124726006007375130000504000000530000001005134158004140004000000002162090109340003585127600005721000000031110100328112116313001109386513344583849518172031417210260418120003382104222126141011098811130885358208000
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................2115210.0052100000000000000000000000000100000000000000103000201010000000000000000000000000000000000000000000000000000000000000000000010101000020000000000010000001040000000000000007100400180601615170000002300000000020000000000000000001730001000000000000000238331315550141030410431400000006140000350010000063730905127911431270142111096002212716290166400100306128211043290445131610001000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG..................................................................2214885.004885000050000100003102100000001014104770000010100000000000000000110000000000000000000001500000001112601152160365121000001015170234114290371152240927490000000000100000000010000000000000001071030841098854113198019324000002261020000000000000000003001003730000023070000000094420126505010644503013010115890110001103000001030000002617250374246281312910166000011106589149330150915303302810213243620391916100300
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................1913675.003675000000000000000000000000010721296193600000000011000101000000000000000000000000000000000000000000000110001200000001000001910103210012100000000000000000000173002000000000002215703091012822337252677442800000434101000001030000000000100000015103000110010000000014703190300842017250000931110000013510000130010100591715312616121601722165250112598838062164190701916201187481163149304515021000
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................2113049.00304900000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000120200100000000000000000000001000900000000000000059022124030207000000200001000000000000000000000101623000000000000000012001061007340937001027210100100103010021204140200324101681911711470713803623411363215113691033212128042111230133859143467873562030000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................2112784.00278400000000000000010000001002171224356200010001013130003011000000000000000000000000100000000100000003010000000030000000000611000000001300000000000000202211180002000000000002765019209196726491151540005005021100001000000000100000031223330002000000000000241710100553102004470200145330020001832601001322011300895297712681162183361217000028268796102329140802381031471444030364277321711308100
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................1912377.00237700000000000000010000000000320000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000200000000000000012013207122000200000020010000100000000000000001001151000000000000000053000110040009001051200000002010000000000000144197456781440107501000021844631331360182226319270353066112961113331430014000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................2112103.00210300001000000000000020000000001041300000000000000000000000003500000000000000000000001000000000240210010010310000000000008238906010423113420250000000000000000001030000000000000005980055004434047154112211000001250000000000000000000000000000200000000010000000044046231022739097000080610000000000000010100000040014416514718109105000000290141200010000300002004154121627002000
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................1811822.001822000000000000000000000000000611511001000100000100000000000000000000000000000000000000000000000000100000000000000000000215901100100101000000000000000001000100000000000000028167016108610152137606290000011102000000000000000000000000014200010000000000006203241000214021300011910110000101000000000000170615910815618901436240200000242405441001000802000001528542951216102000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................2211419.0014190000000000000000000000000000000000000000001020000210000000000000000000000000000000000000000000000000060000000000000030000000030030000000000000001000016000000000000000311860101122193901584210000066201000010000000011000000000034700000001000000009406910003150111400008120000000701301001600040210704595038630613201300103116257101210016015021059236424141618002000
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................2111397.0013970000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000001020000000010000000000000000000060000000000000003540201192201590000006001000010000000000000000000021000010000000040001000400002110248000012200000203050000240001000021331221611613001103025002066995105120011000221404002723826613911106000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................2311168.00116800000000000000001000000000000000000000000000210001100000001000000000000000000000000000000000000010000010000000000000700001000200100000000001010012210220000000000060104405004141130605000000234010000002000000030000000020162116000000010000000030330218000211705100000327200010050500000303100411120460605275073301301105154274719290140603011415001912716617317006100
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................2011009.00100900000000000000000000000000010014121200000000000000000000001020000000000000000000000000000000000050200002000000001000005101083405112000000000000000000003000000000000000670401151401701411830000037000000000000000000000000000000000000000000000002102240002649052000011100000000010000000000000020096881181340235030000908120000000030000000518560325000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................231960.00960000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000001000000000000000000003000000000000000151820100031803012015000000163020000200000000000000000000051001200000000000020003000001201200002100000000010000000012010000127181535033204010014110220001100020020100872814517111516000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231942.009420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000020010000000000000000010140002000000000002518013004516190250500000008202000000000000000000000000001330000000000000000960111000071003000001000000000000000000000000000004164437801720100401012801421001301000000000011187112854000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................201729.00729000010000000000000000000000100000000000000000000000000000000000000000000000000001000000000000230000001000100000000012790905230711511000000000000000000000000000000000000105147033126261150511107000000330000000000000000000000000000000000000000000000010013000000002000000000000000100000000000000000151128290000010000102000000000000000000500001000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................221599.0059900000000000000000000000100000000000000000000100001100000000000000000000000000000000000000000000000000000000000000000100001000404100000000000000000010400010000000000011660902353921110022600000140000000100000000000000000000210000000000000300066014000113021000050001000020310001000000000102202722270350030000154252100011000200003001680531440002000
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGT........................................................................................................231595.00595000000000000000000000000000002510100000000000000000000000000000000000000000001000000000000000000000000000000000000000102000100000000000000000000000011000000000000000100130413500200000003000000000000000000000000000000000000000000000002100100012400200101311000000000100000000000005012514142303220200005312213000030181501232014267249181211001000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAG.........................................................................................................211469.00469000010000000000000000000000321612110000000000001000000000000000000000000000000000300000000000010000000000000000000000400000110000000000000000000000000000000000000000081040410313191211426300000200000000000000000000000000000000000000000000000210020000130200000010000000101000000000000003022016182602100000003146010000001000010027931233000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................201459.0045900000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000020000000000010100000000000000000000000000000300000000000000013260211141341404260000004221000000000000000000000000401030000000000010000302100610000001400001310000000609010100000000008031433302602235000000101414000010003000000021733000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG..................................................................231436.00436000020000100000000000000000000000000000000000000000000000000000000000000000000001000000000040060110331800100100100000010000020105200000000000000000000200000000000000097010005130100401700000028000000000000000000000000000010000000101000000008401600015502300108400000000000000010000000010021453240018450101007177020000206000010011710212000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................231416.004160000100001000000000000000000000000000000000000000000000000000000000000000000000010000000000500601000025000000002010001840201220211280000000000000000000000000000000000008264042007160162702800000030000000000000000000000000000000000100002000000003000100002201000000000010000000000000000000010032240000010000000000000000000000000000000001000
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................181393.003930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104010000000000000000000000000000000000000000000003240542025001227000000000010000000000000000000000000001000000000000100000011000000220020000000000000000000000000000000002626425900200100001024000000000000000039140002002000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTATC.....................................................................................................241327.003270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191136000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................201272.0027200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000003000000000000000000000100000000000000051280220001010210000000000000000000000000000000000000000000000000011000001101101300100001400000000010000000000000000011353002310300001003000000001000000033431021001000
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................191271.0027100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300101010001000000000000000000000000000000000000054401001051101260000006000000000000000000000000000001000000000000000000001200000201600000600000003020000000002000040857122001120100003467110000101021010024761332011000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGAG..................................................................201250.002500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000002103001202010000000040000000000000000000000000000000000000000000000016600100001300000008100000000000000000000000000135372925015940000000137000000102001032001312401000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................221238.0023800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000300000000000000971000100010676000000000000000000000000000000000000481703100000000010000001000000000000000000000000000000000000000000000001000000000200000001100000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................221232.0023200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004030002600000000000000120001000031520000000000000000000000000000000000002925020004502061132000001000000000000000000000000000000000001000000000000100010002010000000020000000000000000000000004006451302100100011201000000102100040001211000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGG...........................................................................................................191222.00222000000000000000000000000000325000100000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000446025401602222120000000000000000000000000000000000000000000010000000010000000001010000010000000000000000000000000000637800100000000010100000000000010036365002000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................231212.00212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000201000000000000000000000000000000000000000535030023040206000000700000000000000000000000000000000000000000000000100021000040120000000000000000000000000100000008455000000000030650100000000010000863131312000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................231198.001980000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000001000000000000000000000000000000000000000003202310722032100000000000000000000000010000000000010000000000000000043001000113011000002000000000000000000000000300581110014410001003165110101008001030044621120002000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.................................................................231186.001860000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000001000104000100000000000000000000000000000000000000002000001000100000030000000000000000000000001010000000000000000000011013110220003000010000200000000000000000000070056320111001000127801000030220100150013721212011100
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................201156.0015600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037702001110001400000020000000000000000000000000000110000000000000000000000000001010000000000000010000000000000000003824400000100003121100000000000000032400101000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................221155.001550000000000000000000000000000000000000000100000002100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000003140300012151446000000000000000000000000000000000000000000000000000000210110001040100000510000000003000010000000001005466001101001041161500010000200000000620101000000
................................................................................................................................................AAATTGACTCTAGTAGGGC..........................................................................................................191150.00150000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000003200000000010000000000000000000000000000000000000310120000004200000002000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000011451100110100001010000000000010000048300001000000
................................................................................................................................................AAATTGACTCTAGTAGGAGT.........................................................................................................204139.505580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100220452200300000010000000000000000000000000000421000000000000000000002000002012000122000000000000000000000000200142011240010010000013100000140121251300352603913202214007000
...............................................................................................................................................CAAATTGACTCTAGTAGGGA..........................................................................................................201139.00139000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000321016500110046020000000000000000000000000000000000000000000000000000000000000000010010000000100000000000000000000001203600010000000020000000000011102043761202000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................211134.001340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000010000000000000000000000030430000000000000000000000000000000000005001001000010000000030000000000000000000000000000000000000000000000000075100031101000002600000000000000100000000010011810350100000000103000000000000000000300000000000
................................................................................................................................................AAATTGACTCTAGTAGGGG..........................................................................................................191129.0012900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000100215000000000000000000000000000000000000010000000000000000000000000005001000000000000000000000000000000000171117500010000000041000000000000000024000001001000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAT......................................................................................................231120.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004180301330409017100000111000000000000000000000000000000000000000000120020002000001000000000000000000000000000000000000331301000010002000000000000000000021430121000000
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................181119.001190000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000030000000000000001000110212100000000030001000000000000000000000000010000000000000000000000000000002100010000000000000001100000000000532600100100000140000000100003010053755643000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................221119.001190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001010030078016040500000029000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004360000010000002210000000000100000500000000000
...............................................................................................................................................CAAATTGACTCTAGTAGG............................................................................................................18196.009600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200100000000000000000000000000000000000000000000004604000000021020000000000000000000000000000000000000000000000000000000000000002010000001000000000000000000000000000397100000000000001000000000000000000210000000000
................................................................................................................................................AAATTGACTCTAGTAGGGGT.........................................................................................................20191.00910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000113600000000000001000000000001000007000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................23189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000540000411040602100000012000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000031210000000000200000000000000000001600100000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................22189.00890000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000020000000000000004903007305050400000017000000000000000000000000000002000000000000000000200000000000000000000000000010000100001000000000330101000000101101000000001002000300020001000
droSim2
ACGTGC-----------------------------------------------------CCTGGCATG---GC-------GC-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---C-------TT-------AAA---AAGGTGTTAGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................2111764.001764699351951013113210883200000
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201791.00791651305658710102102000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................221744.007442025175001201346938100000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................211369.0036915402274168000001300001
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................181224.0022419326012010100000000
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................19192.00923820233921121100000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................23173.00735006000023273000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20162.00623710122100000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21161.0061505210000000300000
.........................................................................................................................C----C-AGTCCTGGTGAAGCTC.............................................................................................................................18153.0053462500000000000000
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................18142.0042420000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................20141.0041401000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAT......................................................................19138.0038271002800000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAC.........................................................................................................20134.0034340000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................21134.0034322000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................21133.0033230100401200101000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................22130.003090122900120400000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................23129.0029001500202210700000
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................19125.0025240010000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGA.......................................................................18124.0024000002400000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................20123.0023151030200000200000
................................................................................................................................................AAATTGACTCTAGTAGGGC..........................................................................................................19119.0019181000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................19117.0017131000300000000000
.......................................................................................................................AAC----C-AGTCCTGGTGAAGCTC.............................................................................................................................20116.0016160000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................21111.001130020000004200000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20111.0011110000000000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGG...........................................................................................................19110.001081000100000000000
........................................................................................................................................................................................CTAACGGAGTCAGATTGA...................................................................18110.001090000000000100000
................................................................................................................................................AAATTGACTCTAGTAGGC...........................................................................................................1819.00990000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................1919.00990000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG..................................................................2219.00922010100010200000
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................2119.00990000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.................................................................2317.00730310000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................2317.00700010100004100000
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2016.00660000000000000000
.................................................................................C-------------------------------------AAC----C-AGTCCTGGTGAAGCTC.............................................................................................................................2116.00650000100000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAG.........................................................................................................2115.00530000200000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGA..........................................................................................................2015.00500000500000000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................2214.00400020000200000000
...............................................................................................................................................CAAATTGACTCTAGTAGG............................................................................................................1814.00430000000100000000
................................................................................................................................................AAATTGACTCTAGTAGGGTTG........................................................................................................2114.00440000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGA...........................................................................................................1814.00440000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................2014.00410000300000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................2313.00320000000100000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................2313.00300020000001000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAA..................................................................2213.00310000000020000000
................................................................................................................................................AAATTGACTCTAGTAGGGCT.........................................................................................................2013.00330000000000000000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGA...................................................................1913.00321000000000000000
...................................................................................................................................................TTGACTCTAGTAGGGAGTC.......................................................................................................1913.00330000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAG.........................................................................................................1813.00330000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................2313.00320000000001000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGC.................................................................2312.00210000100000000000
....................................................................................................................................................TGACTCTAGTAGGGAGTC.......................................................................................................1812.00210000000001000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATT.....................................................................1912.00210000100000000000
................................................................................................................................................AAATTGACTCTAGTAGGGG..........................................................................................................1912.00220000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGATA........................................................................................................2112.00220000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2212.00200000000101000000
......................................................................................................................................................................................CCCTAACGGAGTCAGATTGA...................................................................2012.00220000000000000000
........................................................................................................................AC----C-AGTCCTGGTGAAGCTC.............................................................................................................................1912.00220000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGAT..........................................................................................................1922.00440000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.................................................................2312.00200200000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGA..........................................................................................................1812.00210000100000000000
........................................................................................................................................................................................CTAACGGAGTCAGATTGAA..................................................................1912.00220000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGAT......................................................................1812.00210000100000000000
.................................................................................................................................................AATTGACTCTAGTAGGGT..........................................................................................................1811.00110000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAT.........................................................................................................1911.00110000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGG........................................................................................................1911.00110000000000000000
......................................................................................................................................................................................CCCTAACGGAGTCAGATTG....................................................................1911.00100000100000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGA.................................................................2311.00101000000000000000
......................................................................................................................................................................................CCCTAACGGAGTCAGATTGG...................................................................2011.00110000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGG........................................................................................................2011.00110000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................2211.00100000000000100000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAT.........................................................................................................2111.00110000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAC......................................................................1911.00110000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAAA........................................................................................................2111.00110000000000000000
..................................................................................................................................................ATTGACTCTAGTAGGGAGC........................................................................................................1911.00110000000000000000
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGT........................................................................................................2311.00100000000000100000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAC.........................................................................................................2111.00110000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................2311.00101000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAGT.................................................................2411.00100000000000100000
................................................................................................................................................AAATTGACTCTAGTAGGTC..........................................................................................................1911.00110000000000000000
.....................................................................................................................................................GACTCTAGTAGGGAGT........................................................................................................1611.00100000000001000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................2211.00100000100000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGA........................................................................................................2011.00110000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAAG........................................................................................................2111.00110000000000000000
................................................................................GC-------------------------------------AAC----C-AGTCCTGGTGAAGC...............................................................................................................................2011.00100000100000000000
......................................................................................................................................................ACTCTAGTAGGGAGT........................................................................................................1511.00100000000001000000
................................................................................................................................................AAATTGACTCTAGTAGGGATG........................................................................................................2111.00110000000000000000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTG....................................................................1811.00110000000000000000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................2211.00100000010000000000
.................................................................................................................................................AATTGACTCTAGTAGGGG..........................................................................................................1811.00101000000000000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGT...................................................................2111.00110000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................2111.00100000000000100000
......................................................................................................................................................................................CCCTAACGGAGTCAGATTGAGC.................................................................2211.00100100000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2211.00110000000000000000
.................................................................................................................................................AATTGACTCTAGTAGGGAGC........................................................................................................2011.00110000000000000000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG..................................................................2311.00100000000000100000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTC.....................................................................................................2411.00100000000000001000
................................................................................GC-------------------------------------AAC----C-AGTCCTGGTGAAGCTC.............................................................................................................................2211.00110000000000000000
...................................................................................................................................................TTGACTCTAGTAGGGAGG........................................................................................................1811.00110000000000000000
droSec2
ACGTGC-----------------------------------------------------CCTGACATG---GC-------GC-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---C-------TT-------AAA---AAGGTGTTAGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................211112939.0011293914612438375596600
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22113992.0013992112119042428448
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................1917088.00708814177039
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2115632.005632145401205327
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................2015145.00514514469774585
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2311437.00143725151447814
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2311319.001319101101431056
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201776.00776209813645
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................181478.00478001477
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211442.00442218132281
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................221314.0031442717266
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................181281.00281206273
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................191274.002742521246
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................191210.002108305167
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231186.0018642157104
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211180.001800206154
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221145.001452226358
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................21198.009851488
................................................................................................................................................AAATTGACTCTAGTAGGGC..........................................................................................................19188.008800088
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20187.008763276
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21181.008116074
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................23177.0077710951
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22176.0076417253
................................................................................................................................................AAATTGACTCTAGTAGGGGT.........................................................................................................20160.006000060
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23155.0055110341
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGT........................................................................................................23149.004904936
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG..................................................................22145.0045121329
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21137.003735128
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20125.002560019
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22121.002111217
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................18119.001900217
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................19117.001741012
................................................................................................................................................AAATTGACTCTAGTAGGGTT.........................................................................................................20117.001700017
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20116.001630103
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................23116.001620410
.................................................................................................................................................AATTGACTCTAGTAGGGT..........................................................................................................18115.001500015
................................................................................................................................................AAATTGACTCTAGTAGGGG..........................................................................................................19114.001400014
................................................................................................................................................AAATTGACTCTAGTAGGAGT.........................................................................................................201012.201220123107
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................22112.00120165
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................23112.00121227
.................................................................................................................................................AATTGACTCTAGTAGGGAGA........................................................................................................20111.001101010
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................20111.001101010
................................................................................................................................................AAATTGACTCTAGTAGGTT..........................................................................................................1929.001800018
................................................................................................................................................AAATTGACTCTAGTAGGGAA.........................................................................................................2019.0090108
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................2318.0080017
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2218.0080107
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.....................................................................................................2418.0080008
.......................................................................................................................................................................................CCTAACGGAGTCAGATTG....................................................................1817.0072005
.................................................................................................................................................AATTGACTCTAGTAGGGAGC........................................................................................................2017.0070106
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................2217.0071204
................................................................................................................................................AAATTGACTCTAGTAGGGTA.........................................................................................................2017.0070007
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................2217.0070025
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTA....................................................................2116.0060006
...............................................................................................................................................CAAATTGACTCTAGTAGGGT..........................................................................................................2016.0060006
................................................................................................................................................AAATTGACTCTAGTAGGAT..........................................................................................................1915.0050005
...............................................................................................................................................CAAATTGACTCTAGTAGGGAG.........................................................................................................2115.0050104
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG..................................................................2315.0050023
................................................................................................................................................AAATTGACTCTAGTAGGA...........................................................................................................1815.0050005
........................................................................................................................................................................................CTAACGGAGTCAGATTGA...................................................................1814.0040004
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................2314.0040004
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGA...................................................................1914.0040013
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.................................................................2313.0030012
...............................................................................................................................................CAAATTGACTCTAGTAGGGA..........................................................................................................2013.0031101
................................................................................................................................................AAATTGACTCTAGTAGGGAGAT.......................................................................................................2213.0031002
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................2113.0030003
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................2213.0030012
droYak3
A-GTGA-----------------------AA---------ACGCTATACATTAC-GTGCCTTGAAATG---GC-------AA-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA---C-------TA-------AAAAAAAATGTGTTAGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................2219518.009518272171193264164957124560000
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................2118797.0087971031275635291325426718830000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2114517.004517271803111536275280000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2311529.0015292571093601049420000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................231858.0085842610010140543350000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................221639.0063911614619540420010
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................181389.00389804209021300000
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................201375.00375491121270192300000
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................191183.0018391005011490000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................211161.0016119443438260000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231161.0016106535256930000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231149.001490610349990000
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211125.001257085022650000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................21180.008002465123300000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20177.007712200223200000
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................19171.007131011024320000
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................18151.00518000103300000
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................20148.00481132271670000
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................19146.00461130142610000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23137.0037034062220000
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21135.0035804211730000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22131.0031002071930000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20128.00281111041100000
.........................................................................................................................C----C-AGTCCTGGTGAAGCTC.............................................................................................................................18127.0027250200000000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22127.0027026111070000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20126.002646106900000
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................23126.0026011921300000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22123.0023015141200000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................21118.0018000010800000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG..................................................................22117.001700304810010
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21116.001610026700000
.......................................................................................................................AAC----C-AGTCCTGGTGAAGCTC.............................................................................................................................20115.001560701100000
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGT........................................................................................................23115.001500201750000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................22113.001300028300000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................22112.0012000001200000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCC......................................................................................................22111.001100101900000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................22111.001108001200000
...................................................................................................................................................................................ACTCCCTAACGGAGTCAGATTGA...................................................................2319.00900231300000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT...................................................................2219.00900000900000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................2318.00800003500000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................2316.00601111200000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGAT......................................................................1916.00650100000000
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................1915.00511001200000
................................................................................................................................................AAATTGACTCTAGTAGG............................................................................................................1715.00500000500000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTG......................................................................................................2315.00510001210000
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2215.00501300010000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTC....................................................................2115.00500000500000
...................................................................................................................................................................................ACTCCCTAACGGAGTCAGATTG....................................................................2215.00504000100000
................................................................................................................................................AAATTGACTCTAGTAGGGC..........................................................................................................1915.00520001200000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAT......................................................................................................2314.00400000310000
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................2314.00400003100000
................................................................................................................................................AAATTGACTCTAGTAGGGG..........................................................................................................1914.00410000300000
................................................................................................................................................AAATTGACTCTAGTAGGGAGCT.......................................................................................................2214.00400000400000
.......................................................................................................................................................................................CCTAACGGAGTCAGATTG....................................................................1814.00400001300000
................................................................................................................................................AAATTGACTCTAGTAGGGAGTGT......................................................................................................2314.00401000300000
........................................................................................................................................................................................CTAACGGAGTCAGATTGA...................................................................1814.00420001100000
........................................................................................................................AC----C-AGTCCTGGTGAAGCTC.............................................................................................................................1914.00410300000000
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.................................................................2313.00310000200000
..................................................................................................................................................ATTGACTCTAGTAGGGAG.........................................................................................................1813.00310100100000
................................................................................................................................................AAATTGACTCTAGTAGGTT..........................................................................................................1913.00300000300000
droEre2
A-GTGA-----------------------AA---------AAGCCATACATTAC-GCGCCTTGAAGTG---GC-------GG-------------------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA---C-------TT-------AAA---AAGGTGTTAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................................AAATTGACTCTAGTAGGGAGT........................................................................................................21155442.00554421928431354237051445570
................................................................................................................................................AAATTGACTCTAGTAGGGAGTC.......................................................................................................22117077.001707724820626932331964117330
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTG....................................................................2116750.00675018411427714349880
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCA......................................................................................................2312769.0027694724851922419920
................................................................................................................................................AAATTGACTCTAGTAGGGAG.........................................................................................................2011565.001565313234115911370
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA...................................................................2211530.0015301931343611580
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCT......................................................................................................2311528.0015285116264202179600
................................................................................................................................................AAATTGACTCTAGTAGGGT..........................................................................................................1911427.001427004503413480
................................................................................................................................................AAATTGACTCTAGTAGGG...........................................................................................................181814.008144036067680
.................................................................................................................................................AATTGACTCTAGTAGGGAGT........................................................................................................201522.00522101171804130
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCG......................................................................................................231361.00361160640652160
..................................................................................................................................................ATTGACTCTAGTAGGGAGT........................................................................................................191233.002332000182130
.................................................................................................................................................AATTGACTCTAGTAGGGAGTC.......................................................................................................211231.00231233480131440
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGA...................................................................211135.00135414033840
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCC......................................................................................................231130.001304320212890
................................................................................................................................................AAATTGACTCTAGTAGGGAGC........................................................................................................211122.001221129110890
................................................................................................................................................AAATTGACTCTAGTAGGGA..........................................................................................................191116.001163013520750
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTG....................................................................20190.00902101811490
................................................................................................................................................AAATTGACTCTAGTAGGGAGTA.......................................................................................................22182.008201603720
................................................................................................................................................AAATTGACTCTAGTAGGGAGTT.......................................................................................................22170.0070001228480
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGT........................................................................................................22165.006520604530
................................................................................................................................................AAATTGACTCTAGTAGGT...........................................................................................................18254.00108001011060
..............................................................................................................................................TCAAATTGACTCTAGTAGGGAGT........................................................................................................23149.004900216400
................................................................................................................................................AAATTGACTCTAGTAGGGAGG........................................................................................................21136.003641921190
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTT......................................................................................................23135.0035302012180
................................................................................................................................................AAATTGACTCTAGTAGGGAGA........................................................................................................21127.002710211220
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTT....................................................................21125.002510400200
................................................................................................................................................AAATTGACTCTAGTAGGAGT.........................................................................................................20224.004810305390
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATT.....................................................................20123.002320000210
.......................................................................................................................................................................................CCTAACGGAGTCAGATTGA...................................................................19121.002100300180
.................................................................................................................................................AATTGACTCTAGTAGGGAG.........................................................................................................19121.002120204130
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG..................................................................22120.00201092080
........................................................................................................................................................................................CTAACGGAGTCAGATTGA...................................................................18120.002000000200
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA..................................................................23118.00182090070
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAT......................................................................................................23115.001500104100
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTA......................................................................................................23115.00150040290
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC...................................................................22115.001500150000
..................................................................................................................................................ATTGACTCTAGTAGGGAGTC.......................................................................................................20115.001521100110
................................................................................................................................................AAATTGACTCTAGTAGGGAGTAA......................................................................................................23114.001400001130
...................................................................................................................................................TTGACTCTAGTAGGGAGT........................................................................................................18113.001300000130
...............................................................................................................................................CAAATTGACTCTAGTAGGGAGTC.......................................................................................................23112.00122400150
................................................................................................................................................AAATTGACTCTAGTAGGGAT.........................................................................................................20112.00121010190
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCA......................................................................................................22110.00105000050
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT..................................................................2319.0090050040
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCAA.....................................................................................................2418.0085000030
.......................................................................................................................................................................................CCTAACGGAGTCAGATTG....................................................................1818.0080010070
..................................................................................................................................................ATTGACTCTAGTAGGGAG.........................................................................................................1818.0081010150
.................................................................................................................................................AATTGACTCTAGTAGGGAGTCT......................................................................................................2217.0072000230
................................................................................................................................................AAATTGACTCTAGTAGGGAGTG.......................................................................................................2217.0070030040
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCAC.....................................................................................................2416.0060010230
.................................................................................................................................................AATTGACTCTAGTAGGGT..........................................................................................................1816.0061000050
................................................................................................................................................AAATTGACTCTAGTAGGGC..........................................................................................................1916.0060000060
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.....................................................................................................2415.0050000050
................................................................................................................................................AAATTGACTCTAGTAGGGAGTCGA.....................................................................................................2415.0050020030
......................................................................................................................................................................................CCCTAACGGAGTCAGATTGA...................................................................2015.0050120020
................................................................................................................................................AAATTGACTCTAGTAGGGTT.........................................................................................................2015.0050010040
................................................................................................................................................AAATTGACTCTAGTAGGGTA.........................................................................................................2015.0050000050
......................................................................................................................................................................................CCCTAACGGAGTCAGATTG....................................................................1915.0051000040
................................................................................................................................................AAATTGACTCTAGTAGGGG..........................................................................................................1915.0050000050
..................................................................................................................................................ATTGACTCTAGTAGGGAGTCT......................................................................................................2114.0040200110
...................................................................................................................................................TTGACTCTAGTAGGGAGTC.......................................................................................................1914.0040110020
.....................................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.................................................................2314.0040000040
................................................................................................................................................AAATTGACTCTAGTAGGGAGTTG......................................................................................................2314.0040000130
....................................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG..................................................................2314.0040030010

Generated: 10/20/2015 at 06:57 PM