ID:

dwi_1

 Coordinate:

scf2_1100000004762:2569227-2569291 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.5 -20.5 -20.2

Flybase annnotation

intron [Dwil\GK12379-in]; utr3 [utr3_minus_5493]

No Repeatable elements found

Sense Strand Reads

ACAGAAAAAAGAAAATGCACTTTGCCATCAAAACGAATGTGCGAATATGCAATTTGGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAATTAATGCAAGTTTTTGCCATAATTTTA

***********************************..((((.(((...(((((((((...((...((((((.((.(((((....))))).)))))))).))...))))...))))).....))).)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M020

head

 M045

female body

 V117

male body		 V118

embryo

 V119

head
...........................................................................................TTTCGAGACCACTCTAATCCATT................................................... 23 0 1 379771.00 379771 229334 141608 4364 3753 712
...........................................................................................TTTCGAGACCACTCTAATCCAT.................................................... 22 0 1 225487.00 225487 147513 74135 2448 1094 297
............................................................................................TTCGAGACCACTCTAATCCATT................................................... 22 0 1 141330.00 141330 66093 70735 2541 1602 359
...........................................................................................TTTCGAGACCACTCTAATCCA..................................................... 21 0 1 27572.00 27572 4920 21904 577 130 41
............................................................................................TTCGAGACCACTCTAATCCAT.................................................... 21 0 1 22524.00 22524 8758 13351 340 45 30
...........................................................................................TTTCGAGACCACTCTAATCC...................................................... 20 0 1 16673.00 16673 10381 6216 65 9 2
...........................................................................................TTTCGAGACCACTCTAATCCATTT.................................................. 24 1 1 12797.00 12797 8138 4588 62 6 3
...........................................................................................TTTCGAGACCACTCTAATCCAC.................................................... 22 1 1 10791.00 10791 10754 35 2 0 0
.............................................................................................TCGAGACCACTCTAATCCATT................................................... 21 0 1 6076.00 6076 67 5978 20 8 3
............................................................................................TTCGAGACCACTCTAATCCATTT.................................................. 23 1 1 5422.00 5422 2990 2368 50 10 4
............................................................................................TTCGAGACCACTCTAATCCA..................................................... 20 0 1 2802.00 2802 163 2618 17 3 1
...........................................................................................TTTCGAGACCACTCTAATCCAA.................................................... 22 1 1 1964.00 1964 1174 777 8 5 0
...........................................................................................TTTCGAGACCACTCTAATCCATC................................................... 23 1 1 1625.00 1625 1571 42 6 3 3
..........................................................................................GTTTCGAGACCACTCTAATCCAT.................................................... 23 0 1 1352.00 1352 773 575 3 1 0
..........................................................................................GTTTCGAGACCACTCTAATCCA..................................................... 22 0 1 1128.00 1128 73 1051 2 2 0
............................................................................................TTCGAGACCACTCTAATCC...................................................... 19 0 1 1100.00 1100 407 693 0 0 0
.............................................................................................TCGAGACCACTCTAATCCAT.................................................... 20 0 1 1095.00 1095 26 1062 6 1 0
...........................................................................................TTTCGAGACCACTCTAATCCAG.................................................... 22 1 1 865.00 865 809 56 0 0 0
...........................................................................................TTTCGAGACCACTCTAATC....................................................... 19 0 1 861.00 861 595 252 3 4 7
...........................................................................................TTTCGAGACCACTCTAATCCATA................................................... 23 1 1 850.00 850 311 472 23 39 5
...........................................................................................TTTCGAGACCAGTCTAATCCATT................................................... 23 1 1 754.00 754 20 734 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCT..................................................... 21 1 1 742.00 742 536 199 3 3 1
............................................................................................TTCGAGACCACTCTAATCCAC.................................................... 21 1 1 662.00 662 658 4 0 0 0
...........................................................................................TTTCGAGACCACGCTAATCCATT................................................... 23 1 1 619.00 619 609 9 1 0 0
...........................................................................................TTTCGAGACCACACTAATCCATT................................................... 23 1 1 597.00 597 577 14 3 1 2
..........................................................................................GTTTCGAGACCACTCTAATCCATT................................................... 24 0 1 581.00 581 227 354 0 0 0
..........................................................................................GTTTCGAGACCACTCTAATCC...................................................... 21 0 1 579.00 579 247 331 1 0 0
..............................................................................................CGAGACCACTCTAATCCATT................................................... 20 0 1 552.00 552 7 541 4 0 0
............................................................................................TTCGAGACCACTCTAATCCATA................................................... 22 1 1 517.00 517 172 297 14 30 4
...........................................................................................TTTCGAGACCACTCTAATCCTT.................................................... 22 1 1 516.00 516 344 170 1 1 0
............................................................................................TTCGAGACCACTCTAATCCATC................................................... 22 1 1 503.00 503 470 27 3 1 2
...........................................................................................TTTCGAGGCCACTCTAATCCATT................................................... 23 1 1 467.00 467 358 93 10 3 3
...........................................................................................TTTCGAGACCACTCTAATCCATTA.................................................. 24 1 1 422.00 422 96 312 9 4 1
...........................................................................................TTTCGAGACCAATCTAATCCATT................................................... 23 1 1 421.00 421 39 374 0 4 4
............................................................................................TTCGAGACCACGCTAATCCATT................................................... 22 1 1 418.00 418 3 415 0 0 0
...........................................................................................TTTCGAGACCAGTCTAATCCAT.................................................... 22 1 1 413.00 413 10 403 0 0 0
...........................................................................................TTTCGAGACCACGCTAATCCAT.................................................... 22 1 1 408.00 408 403 5 0 0 0
...........................................................................................TTTCGAGACCACCCTAATCCATT................................................... 23 1 1 383.00 383 307 62 7 7 0
...........................................................................................TTTCGAGACCACACTAATCCAT.................................................... 22 1 1 367.00 367 361 6 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATTG.................................................. 24 0 1 334.00 334 3 325 0 3 3
...........................................................................................TTTCGAGGCCACTCTAATCCAT.................................................... 22 1 1 276.00 276 210 60 5 1 0
...........................................................................................CTTCGAGACCACTCTAATCCATT................................................... 23 1 1 271.00 271 124 127 5 12 3
..........................................................................................CTTTCGAGACCACTCTAATCCATT................................................... 24 1 1 267.00 267 86 174 0 7 0
...........................................................................................TTTCGAGACCACTCTAATCCATTTT................................................. 25 2 1 264.00 264 162 101 1 0 0
...........................................................................................TTTCGAGACCAATCTAATCCAT.................................................... 22 1 1 238.00 238 34 203 1 0 0
...........................................................................................TTTCGAGACCACCCTAATCCAT.................................................... 22 1 1 230.00 230 192 34 3 0 1
.............................................................................................TCGAGACCACTCTAATCCATTT.................................................. 22 1 1 229.00 229 7 221 1 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATG................................................... 23 1 1 209.00 209 137 67 3 2 0
...........................................................................................TTTCGAGACCGCTCTAATCCATT................................................... 23 1 1 208.00 208 92 106 5 3 2
............................................................................................TTCGAGACCACTCTAATCCATTA.................................................. 23 1 1 204.00 204 39 157 6 2 0
.............................................................................................TCGAGACCACTCTAATCCA..................................................... 19 0 1 199.00 199 2 197 0 0 0
...............................................................................................GAGACCACTCTAATCCATT................................................... 19 0 1 196.00 196 10 184 0 2 0
............................................................................................TTCGAGACCACTCTAATCCATTTT................................................. 24 2 1 195.00 195 107 85 2 0 1
............................................................................................TTCGAGACCACACTAATCCATT................................................... 22 1 1 192.00 192 9 183 0 0 0
............................................................................................TTCGAGACCACTGTAATCCATT................................................... 22 1 1 171.00 171 166 5 0 0 0
............................................................................................TTCGAGACCACCCTAATCCATT................................................... 22 1 1 166.00 166 41 121 4 0 0
..........................................................................................CTTTCGAGACCACTCTAATCCAT.................................................... 23 1 1 166.00 166 57 107 1 0 1
...........................................................................................TTTCGAGACCATTCTAATCCATT................................................... 23 1 1 157.00 157 45 108 3 1 0
...........................................................................................TTTCGAGACCACTCTAATCCC..................................................... 21 1 1 155.00 155 82 69 3 0 1
...........................................................................................TTTCGAGACAACTCTAATCCATT................................................... 23 1 1 152.00 152 105 36 2 7 2
...........................................................................................TTTCGGGACCACTCTAATCCATT................................................... 23 1 1 147.00 147 85 58 3 1 0
............................................................................................TTCGAGACAACTCTAATCCATT................................................... 22 1 1 144.00 144 117 23 3 1 0
...........................................................................................TTTCTAGACCACTCTAATCCATT................................................... 23 1 1 144.00 144 55 79 3 5 2
...........................................................................................TTTCGAGACCACTCTAGTCCATT................................................... 23 1 1 136.00 136 73 59 4 0 0
............................................................................................TTCGAGACCACTCTAATCCATTG.................................................. 23 0 1 136.00 136 0 129 2 2 3
............................................................................................TTCGAGGCCACTCTAATCCATT................................................... 22 1 1 135.00 135 80 50 4 1 0
...........................................................................................TTTCGAGACCACTCTAAT........................................................ 18 0 1 134.00 134 99 35 0 0 0
............................................................................................TTCGAGACCACTATAATCCATT................................................... 22 1 1 133.00 133 126 5 1 1 0
..........................................................................................TTTTCGAGACCACTCTAATCCATT................................................... 24 1 1 132.00 132 2 129 0 1 0
...........................................................................................CTTCGAGACCACTCTAATCCAT.................................................... 22 1 1 130.00 130 72 47 5 3 3
...........................................................................................TTTCGAGACCGCTCTAATCCAT.................................................... 22 1 1 129.00 129 74 54 1 0 0
..............................................................................................CGAGACCACTCTAATCCAT.................................................... 19 0 1 126.00 126 1 124 0 0 1
...........................................................................................TTTCGAGACCACTCTAACCCATT................................................... 23 1 1 123.00 123 67 53 0 1 2
...........................................................................................TTTCGAGACCACTCTAATCCCTT................................................... 23 1 1 123.00 123 112 3 4 3 1
...........................................................................................TTTCAAGACCACTCTAATCCATT................................................... 23 1 1 118.00 118 82 29 3 2 2
...........................................................................................TTTCGAGAACACTCTAATCCATT................................................... 23 1 1 117.00 117 109 6 0 1 1
..........................................................................................GTTTCGAGACCACTCTAATCCT..................................................... 22 1 1 117.00 117 80 37 0 0 0
...........................................................................................TTTCGAGACTACTCTAATCCATT................................................... 23 1 1 112.00 112 78 29 3 2 0
...........................................................................................TTTCGAGACCACTCTAATCCACT................................................... 23 1 1 110.00 110 74 29 3 4 0
............................................................................................TTCGAGACCACTCTAATCCAA.................................................... 21 1 1 109.00 109 9 100 0 0 0
...........................................................................................TTTCGAGACCAGTCTAATCCA..................................................... 21 1 1 108.00 108 1 107 0 0 0
...........................................................................................TTTCGAGACCACTCTGATCCATT................................................... 23 1 1 106.00 106 48 52 3 1 2
...........................................................................................TTTCGAGACCACTCTAATCCGTT................................................... 23 1 1 106.00 106 61 40 3 2 0
...........................................................................................TTTCGGGACCACTCTAATCCAT.................................................... 22 1 1 105.00 105 77 24 4 0 0
..........................................................................................ATTTCGAGACCACTCTAATCCATT................................................... 24 1 1 102.00 102 1 101 0 0 0
...........................................................................................TTTTGAGACCACTCTAATCCATT................................................... 23 1 1 97.00 97 65 25 1 6 0
...........................................................................................TTTCGAGAACACTCTAATCCAT.................................................... 22 1 1 96.00 96 90 4 0 2 0
..........................................................................................TTTTCGAGACCACTCTAATCCAT.................................................... 23 1 1 92.00 92 6 86 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCG..................................................... 21 1 1 92.00 92 73 18 1 0 0
...........................................................................................TTTCGAGACAACTCTAATCCAT.................................................... 22 1 1 90.00 90 65 22 0 2 1
............................................................................................TTCGAGACCACTCTAATC....................................................... 18 0 1 90.00 90 69 20 1 0 0
...........................................................................................TTTCTAGACCACTCTAATCCAT.................................................... 22 1 1 90.00 90 55 33 1 1 0
...........................................................................................TTTCGAGACTACTCTAATCCAT.................................................... 22 1 1 89.00 89 67 18 2 2 0
...........................................................................................TTTCGAGACCACTCTAGTCCAT.................................................... 22 1 1 89.00 89 60 27 1 1 0
...........................................................................................GTTCGAGACCACTCTAATCCATT................................................... 23 1 1 88.00 88 13 72 1 0 2
...........................................................................................TCTCGAGACCACTCTAATCCATT................................................... 23 1 1 85.00 85 47 33 4 1 0
...........................................................................................TTTCGAGACCATTCTAATCCAT.................................................... 22 1 1 84.00 84 29 52 1 2 0
...........................................................................................TTTCGAGACCACTCTAATCTATT................................................... 23 1 1 83.00 83 57 21 4 0 1
...........................................................................................TTTCGAGACCACTCTAATCCCT.................................................... 22 1 1 82.00 82 76 4 1 1 0
...............................................................................................GAGACCACTCTAATCCAT.................................................... 18 0 1 81.00 81 9 71 0 1 0
...........................................................................................TTTCGAGATCACTCTAATCCATT................................................... 23 1 1 80.00 80 57 16 2 3 2
...........................................................................................TTTCGAGACCACTCTAATCCAAA................................................... 23 2 1 80.00 80 66 14 0 0 0
............................................................................................TTCGGGACCACTCTAATCCATT................................................... 22 1 1 80.00 80 41 33 3 2 1
...........................................................................................TTTCGAGACCACTCTAATTCATT................................................... 23 1 1 77.00 77 41 31 2 2 1
...........................................................................................TTTCGAAACCACTCTAATCCATT................................................... 23 1 1 75.00 75 54 19 1 0 1
...........................................................................................TTTCGAGACCACTCTAATCCGT.................................................... 22 1 1 74.00 74 39 33 0 2 0
...........................................................................................TTTCGAGACCACTCCAATCCATT................................................... 23 1 1 71.00 71 31 34 2 3 1
...........................................................................................ATTCGAGACCACTCTAATCCATT................................................... 23 1 1 69.00 69 16 49 1 1 2
............................................................................................TTCGAGACCACGCTAATCCAT.................................................... 21 1 1 69.00 69 0 69 0 0 0
............................................................................................CTCGAGACCACTCTAATCCATT................................................... 22 1 1 68.00 68 36 27 1 2 2
............................................................................................TTCGAGACCGCTCTAATCCATT................................................... 22 1 1 68.00 68 31 35 2 0 0
...........................................................................................TTTCGAGACCACTCCAATCCAT.................................................... 22 1 1 66.00 66 39 26 0 1 0
...........................................................................................TTTCGAGACCACTCTAACCCAT.................................................... 22 1 1 66.00 66 45 18 2 1 0
..........................................................................................GTTTCGAGACCACTCTAATCCAA.................................................... 23 1 1 65.00 65 33 32 0 0 0
.............................................................................................TCGAGACCACTCTAATCC...................................................... 18 0 1 65.00 65 18 47 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCAAT................................................... 23 1 1 64.00 64 43 19 0 1 1
...........................................................................................TTTCAAGACCACTCTAATCCAT.................................................... 22 1 1 64.00 64 55 9 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATTAA................................................. 25 2 1 64.00 64 25 38 0 0 1
...........................................................................................TTTCGAGACCACTCTAATCCTTT................................................... 23 1 1 63.00 63 41 20 0 1 1
...........................................................................................TTTCGAGATCACTCTAATCCAT.................................................... 22 1 1 59.00 59 51 6 1 0 1
................................................................................................AGACCACTCTAATCCATT................................................... 18 0 1 59.00 59 1 58 0 0 0
..........................................................................................ATTTCGAGACCACTCTAATCCAT.................................................... 23 1 1 57.00 57 1 56 0 0 0
............................................................................................TTCGAGACCACTCTAATCCATG................................................... 22 1 1 54.00 54 36 18 0 0 0
...........................................................................................TTTCGAGACCACTTTAATCCATT................................................... 23 1 1 51.00 51 31 17 3 0 0
...........................................................................................TTCCGAGACCACTCTAATCCATT................................................... 23 1 1 51.00 51 29 16 4 1 1
...........................................................................................TTTTGAGACCACTCTAATCCAT.................................................... 22 1 1 51.00 51 42 9 0 0 0
............................................................................................TTCGAGACTACTCTAATCCATT................................................... 22 1 1 50.00 50 33 14 0 2 1
..........................................................................................GTTTCGAGACCACTCTAATC....................................................... 20 0 1 50.00 50 18 31 1 0 0
..........................................................................................GTTTCGAGACCACTCTAATCCAC.................................................... 23 1 1 49.00 49 49 0 0 0 0
...........................................................................................TTTCGAAACCACTCTAATCCAT.................................................... 22 1 1 49.00 49 41 7 1 0 0
...........................................................................................TTTCGAGACCACTCTAATCAATT................................................... 23 1 1 48.00 48 20 19 0 4 5
............................................................................................TTCTAGACCACTCTAATCCATT................................................... 22 1 1 48.00 48 17 27 1 2 1
............................................................................................TTCGAGACCACTCTAGTCCATT................................................... 22 1 1 48.00 48 16 29 2 1 0
...........................................................................................TCTCGAGACCACTCTAATCCAT.................................................... 22 1 1 47.00 47 29 15 1 1 1
............................................................................................TTCGAGACCACTCCAATCCATT................................................... 22 1 1 47.00 47 16 23 3 5 0
...........................................................................................TTTCGAGACCACTCAAATCCATT................................................... 23 1 1 47.00 47 16 29 0 2 0
............................................................................................TTCAAGACCACTCTAATCCATT................................................... 22 1 1 46.00 46 30 15 0 1 0
...........................................................................................TTTCGAGACCTCTCTAATCCATT................................................... 23 1 1 45.00 45 25 16 2 2 0
...........................................................................................TTTCGAGACCAATCTAATCCA..................................................... 21 1 1 44.00 44 2 41 0 1 0
...........................................................................................TTTCGAGAGCACTCTAATCCATT................................................... 23 1 1 43.00 43 40 1 2 0 0
............................................................................................TTAGAGACCACTCTAATCCATT................................................... 22 1 1 43.00 43 18 24 0 1 0
............................................................................................TTCGAGACCACTCTAATCCAG.................................................... 21 1 1 43.00 43 35 8 0 0 0
...........................................................................................TTTCCAGACCACTCTAATCCATT................................................... 23 1 1 42.00 42 21 19 2 0 0
...........................................................................................TTTCGATACCACTCTAATCCATT................................................... 23 1 1 42.00 42 10 24 1 6 1
............................................................................................TTCGAGACCACTCTAACCCATT................................................... 22 1 1 42.00 42 18 23 1 0 0
...........................................................................................TTTCGAGACCCCTCTAATCCATT................................................... 23 1 1 42.00 42 22 10 8 2 0
..........................................................................................GTTTCGAGACCACTCTAATCCATTT.................................................. 25 1 1 41.00 41 10 31 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATTC.................................................. 24 1 1 41.00 41 10 31 0 0 0
............................................................................................TTCGAGACCACTCTAATCCGTT................................................... 22 1 1 40.00 40 20 17 1 1 1
...........................................................................................TTTAGAGACCACTCTAATCCATT................................................... 23 1 1 40.00 40 17 14 2 6 1
............................................................................................TTCGAGACCACTCTAATCCACT................................................... 22 1 1 39.00 39 20 16 2 1 0
...........................................................................................TTTCGAGACCACTCTAATTCAT.................................................... 22 1 1 38.00 38 24 14 0 0 0
..............................................................................................CGAGACCACTCTAATCCA..................................................... 18 0 1 38.00 38 0 38 0 0 0
............................................................................................TTCGAGACCACACTAATCCAT.................................................... 21 1 1 38.00 38 0 38 0 0 0
...........................................................................................TTTCGAGACCACTCTGATCCAT.................................................... 22 1 1 38.00 38 15 22 0 1 0
...........................................................................................TTTCGAGACCAGTCTAATCCATTT.................................................. 24 2 1 37.00 37 2 35 0 0 0
............................................................................................TTTGAGACCACTCTAATCCATT................................................... 22 1 1 36.00 36 15 17 1 2 1
...........................................................................................GTTCGAGACCACTCTAATCCAT.................................................... 22 1 1 36.00 36 7 28 0 0 1
...........................................................................................TTCCGAGACCACTCTAATCCAT.................................................... 22 1 1 36.00 36 22 9 1 4 0
..........................................................................................CTTTCGAGACCACTCTAATCCA..................................................... 22 1 1 36.00 36 3 33 0 0 0
............................................................................................TTCGAGACCACTTTAATCCATT................................................... 22 1 1 35.00 35 26 8 1 0 0
...........................................................................................TTTCGAGACCACTCTAATCTAT.................................................... 22 1 1 35.00 35 27 7 0 1 0
...........................................................................................TTTCGAGAGCACTCTAATCCAT.................................................... 22 1 1 35.00 35 34 1 0 0 0
...........................................................................................TTTCGAGACCACACTAATCC...................................................... 20 1 1 34.00 34 34 0 0 0 0
...........................................................................................TTACGAGACCACTCTAATCCATT................................................... 23 1 1 34.00 34 10 23 1 0 0
...........................................................................................ATTCGAGACCACTCTAATCCAT.................................................... 22 1 1 34.00 34 17 15 0 1 1
............................................................................................TTCGAGACCACTCTAATTCATT................................................... 22 1 1 33.00 33 21 9 1 2 0
...........................................................................................TTTCGAGACGACTCTAATCCATT................................................... 23 1 1 33.00 33 19 11 1 1 1
...........................................................................................TTTCGAGACCACTCTAAACCATT................................................... 23 1 1 32.00 32 24 6 2 0 0
...........................................................................................TTTCGAGACCACTTTAATCCAT.................................................... 22 1 1 32.00 32 24 5 1 2 0
...........................................................................................TTACGAGACCACTCTAATCCAT.................................................... 22 1 1 32.00 32 12 20 0 0 0
............................................................................................TTCGAAACCACTCTAATCCATT................................................... 22 1 1 32.00 32 17 10 1 2 2
.............................................................................................TCGAGACCACTGTAATCCATT................................................... 21 1 1 31.00 31 0 31 0 0 0
............................................................................................TTCGAGACGACTCTAATCCATT................................................... 22 1 1 31.00 31 27 3 1 0 0
...........................................................................................TTTCGAGACCAGTCTAATCC...................................................... 20 1 1 31.00 31 0 31 0 0 0
.............................................................................................TCGAGACCACTCTAATCCATA................................................... 21 1 1 30.00 30 0 30 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATAA.................................................. 24 2 1 30.00 30 12 16 1 1 0
...........................................................................................TTTCGACACCACTCTAATCCATT................................................... 23 1 1 30.00 30 19 7 2 2 0
...........................................................................................TTTCGAGACCACTATAATCCATT................................................... 23 1 1 30.00 30 15 10 1 3 1
...........................................................................................TTTCGAGACCACTCTAATCCAGT................................................... 23 1 1 29.00 29 14 14 1 0 0
...........................................................................................TTTCGAGACCACTCTAAATCC..................................................... 21 3 2 29.00 58 51 7 0 0 0
............................................................................................TTCGAGACCACTCTAATCTATT................................................... 22 1 1 29.00 29 18 10 1 0 0
...........................................................................................TTTCGAGGCCACTCTAATCCA..................................................... 21 1 1 28.00 28 9 19 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCAAT.................................................... 22 1 1 28.00 28 11 16 0 0 1
...........................................................................................TTTCGAGACCACTCTAATACATT................................................... 23 1 1 28.00 28 13 10 0 3 2
............................................................................................TTCGAGACCACTCTGATCCATT................................................... 22 1 1 27.00 27 16 9 1 1 0
...........................................................................................TTTGGAGACCACTCTAATCCATT................................................... 23 1 1 27.00 27 19 7 0 1 0
...........................................................................................TTTCGAGACCACTCTAATCCATTTA................................................. 25 2 1 27.00 27 10 17 0 0 0
............................................................................................ATCGAGACCACTCTAATCCATT................................................... 22 1 1 26.00 26 9 15 2 0 0
...........................................................................................TTTCGAGACCACGCTAATCCAC.................................................... 22 2 1 26.00 26 26 0 0 0 0
...........................................................................................TTTCGAGACCACGCTAATCC...................................................... 20 1 1 26.00 26 26 0 0 0 0
............................................................................................TTCGAGACCACTGTAATCCAT.................................................... 21 1 1 26.00 26 25 1 0 0 0
...........................................................................................TTTCGAGACCACTCTATTCCATT................................................... 23 1 1 26.00 26 18 6 1 1 0
............................................................................................TTCGAGACCACTCTAATCCATTC.................................................. 23 1 1 26.00 26 4 22 0 0 0
...........................................................................................TTTAGAGACCACTCTAATCCAT.................................................... 22 1 1 26.00 26 13 7 1 3 2
...........................................................................................TTTCGAGCCCACTCTAATCCATT................................................... 23 1 1 25.00 25 12 7 3 2 1
............................................................................................TCCGAGACCACTCTAATCCATT................................................... 22 1 1 25.00 25 12 8 2 3 0
............................................................................................TTCGAGGCCACTCTAATCCAT.................................................... 21 1 1 25.00 25 11 14 0 0 0
..........................................................................................ATTTCGAGACCACTCTAATCCA..................................................... 22 1 1 25.00 25 0 25 0 0 0
............................................................................................TTCGAGACCACTCTAATCCT..................................................... 20 1 1 25.00 25 2 23 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATTAAA................................................ 26 3 1 24.00 24 21 3 0 0 0
...........................................................................................TTTCGAGACCACTCAAATCCAT.................................................... 22 1 1 24.00 24 9 15 0 0 0
...........................................................................................TTTCGAGACCCCTCTAATCCAT.................................................... 22 1 1 23.00 23 17 4 2 0 0
............................................................................................TTCGAGACAACTCTAATCCAT.................................................... 21 1 1 22.00 22 16 6 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCGATT................................................... 23 1 1 22.00 22 15 4 1 2 0
............................................................................................TTCGAGACCACTCTAATCCTTT................................................... 22 1 1 22.00 22 10 12 0 0 0
...........................................................................................TTTCGAGACCACGCTAATCCATTT.................................................. 24 2 1 22.00 22 22 0 0 0 0
...........................................................................................TTTCGAGACCACCCTAATCCA..................................................... 21 1 1 22.00 22 6 16 0 0 0
............................................................................................TTCGAGACCAATCTAATCCATT................................................... 22 1 1 22.00 22 14 6 1 1 0
............................................................................................TTCGAGACCACCCTAATCCAT.................................................... 21 1 1 22.00 22 3 18 0 1 0
...........................................................................................TTTCGAGGCCACTCTAATCCAC.................................................... 22 2 1 22.00 22 22 0 0 0 0
............................................................................................TTCGAGACCACTCTAATCAATT................................................... 22 1 1 22.00 22 3 17 0 2 0
...........................................................................................TTTCGAGACCACACTAATCCAC.................................................... 22 2 1 22.00 22 22 0 0 0 0
...........................................................................................TTTCGAGACCGCTCTAATCCA..................................................... 21 1 1 21.00 21 2 19 0 0 0
............................................................................................GTCGAGACCACTCTAATCCATT................................................... 22 1 1 21.00 21 1 20 0 0 0
............................................................................................TTCGAGACCACTATAATCCAT.................................................... 21 1 1 21.00 21 21 0 0 0 0
............................................................................................TTCGAGACCACTCTAATCCTT.................................................... 21 1 1 21.00 21 5 16 0 0 0
...........................................................................................TTTCGATACCACTCTAATCCAT.................................................... 22 1 1 21.00 21 15 5 1 0 0
............................................................................................TTCGAGACCACTCTAATCCAAT................................................... 22 1 1 21.00 21 13 7 0 0 1
............................................................................................TTGGAGACCACTCTAATCCATT................................................... 22 1 1 20.00 20 7 12 1 0 0
...........................................................................................TTTCGAGCCCACTCTAATCCAT.................................................... 22 1 1 20.00 20 10 7 2 1 0
..............................................................................CTAAGAGGTGTAGTTTCGAGACCACT............................................................. 26 0 1 20.00 20 1 2 16 1 0
...........................................................................................TTTCGAGACCTCTCTAATCCAT.................................................... 22 1 1 20.00 20 11 9 0 0 0
...........................................................................................TTGCGAGACCACTCTAATCCATT................................................... 23 1 1 20.00 20 4 16 0 0 0
...........................................................................................TTTCGAGACCACCCTAATCCATTT.................................................. 24 2 1 20.00 20 14 6 0 0 0
...........................................................................................TTTCGAGACCACACTAATCCATTT.................................................. 24 2 1 20.00 20 20 0 0 0 0
...........................................................................................TTTCGACACCACTCTAATCCAT.................................................... 22 1 1 19.00 19 12 6 1 0 0
............................................................................................TTCGAGACCACGCTAATCCA..................................................... 20 1 1 19.00 19 0 19 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATTTAA................................................ 26 3 1 19.00 19 13 6 0 0 0
............................................................................................TTCGAGACCACTCAAATCCATT................................................... 22 1 1 19.00 19 8 11 0 0 0
...........................................................................................TATCGAGACCACTCTAATCCATT................................................... 23 1 1 19.00 19 13 6 0 0 0
...........................................................................................TTTCGAGGCCACTCTAATCC...................................................... 20 1 1 18.00 18 12 6 0 0 0
...........................................................................................TTTCGAGTCCACTCTAATCCATT................................................... 23 1 1 18.00 18 9 6 1 2 0
...........................................................................................TTTGGAGACCACTCTAATCCAT.................................................... 22 1 1 18.00 18 10 7 1 0 0
...........................................................................................TTTCGTGACCACTCTAATCCATT................................................... 23 1 1 17.00 17 11 6 0 0 0
............................................................................................TTCGAGACCACTCTAATCCATTAA................................................. 24 2 1 17.00 17 6 11 0 0 0
...........................................................................................TTTCGAGACCAATCTAATCC...................................................... 20 1 1 17.00 17 1 16 0 0 0
...........................................................................................TTTCGAGACGACTCTAATCCAT.................................................... 22 1 1 17.00 17 16 1 0 0 0
............................................................................................TTCGAGACCACTCTAATCCCTT................................................... 22 1 1 17.00 17 12 3 2 0 0
............................................................................................TTTCAGACCACTCTAATCCATT................................................... 22 2 1 17.00 17 2 15 0 0 0
............................................................................................TTCGAGCCCACTCTAATCCATT................................................... 22 1 1 17.00 17 11 2 1 3 0
...........................................................................................TTTCGAGACCACCCTAATCC...................................................... 20 1 1 16.00 16 13 3 0 0 0
...........................................................................................TTTCCAGACCACTCTAATCCAT.................................................... 22 1 1 16.00 16 6 6 3 1 0
...........................................................................................TTTCGAGACCACTCTCATCCATT................................................... 23 1 1 16.00 16 5 8 2 1 0
...........................................................................................TTTCGAGACCACTGTAATCCATT................................................... 23 1 1 16.00 16 12 3 1 0 0
...........................................................................................TTTCGAGACCACTCTATTCCAT.................................................... 22 1 1 16.00 16 13 3 0 0 0
............................................................................................TTCGAGACCATTCTAATCCATT................................................... 22 1 1 16.00 16 5 9 0 2 0
...........................................................................................TTTCGAGACCACTATAATCCAT.................................................... 22 1 1 16.00 16 11 4 0 1 0
............................................................................................TTCGAGACCTCTCTAATCCATT................................................... 22 1 1 16.00 16 9 6 1 0 0
............................................................................................TTCGAGATCACTCTAATCCATT................................................... 22 1 1 15.00 15 9 4 0 2 0
...........................................................................................TTTCGTGACCACTCTAATCCAT.................................................... 22 1 1 15.00 15 6 8 1 0 0
...........................................................................................TTTCGAGACCACTCTAATCCATTTTT................................................ 26 3 1 15.00 15 11 4 0 0 0
..........................................................................................TTTTCGAGACCACTCTAATCCA..................................................... 22 1 1 15.00 15 0 15 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCT...................................................... 20 1 1 15.00 15 10 5 0 0 0
............................................................................................TTCGAGACCACTCTAATCCAAA................................................... 22 2 1 15.00 15 9 6 0 0 0
............................................................................................TTCGACACCACTCTAATCCATT................................................... 22 1 1 15.00 15 6 8 1 0 0
............................................................................................TTCGAGACCAGTCTAATCCATT................................................... 22 1 1 15.00 15 3 12 0 0 0
............................................................................................TTCGAGACCACTCTATTCCATT................................................... 22 1 1 15.00 15 9 6 0 0 0
.............................................................................................TTCAGACCACTCTAATCCATT................................................... 21 2 1 15.00 15 2 12 0 1 0
...........................................................................................TTTCGAGACCATTCTAATCCA..................................................... 21 1 1 14.00 14 1 13 0 0 0
...........................................................................................TTTCGAGACCACTCTTATCCAT.................................................... 22 1 1 14.00 14 11 2 0 1 0
............................................................................................TTTCAGACCACTCTAATCCAT.................................................... 21 2 1 14.00 14 1 9 4 0 0
...........................................................................................TTGCGAGACCACTCTAATCCAT.................................................... 22 1 1 14.00 14 3 11 0 0 0
...........................................................................................TTTCGAGACCACTCTTATCCATT................................................... 23 1 1 14.00 14 8 4 2 0 0
...........................................................................................TTTCGAGACCACCCTAATCCAC.................................................... 22 2 1 14.00 14 14 0 0 0 0
...........................................................................................TTTCGAGACCACTCTAAACCAT.................................................... 22 1 1 14.00 14 10 4 0 0 0
...........................................................................................TTTCAAGACCACTCTAATCCA..................................................... 21 1 1 14.00 14 4 8 2 0 0
..............................................................................................CGAGACCACTCTAATCCATTT.................................................. 21 1 1 14.00 14 0 14 0 0 0
...........................................................................................TTTCGAGACCACTCTCATCCAT.................................................... 22 1 1 13.00 13 7 5 0 0 1
..........................................................................................CTTTCGAGACCACTCTAATCC...................................................... 21 1 1 13.00 13 6 7 0 0 0
.......................................................................................GTAGTTTCGAGACCACTCTAATCCATT................................................... 27 0 1 13.00 13 8 5 0 0 0
...........................................................................................TTTCGAGACCACACTAATCCA..................................................... 21 1 1 13.00 13 11 2 0 0 0
...........................................................................................TTTCGAGACCACTCTAATACAT.................................................... 22 1 1 13.00 13 5 5 0 2 1
...........................................................................................TTTCGAGACCACTCTAATT....................................................... 19 1 1 13.00 13 9 4 0 0 0
...........................................................................................TTTCGAGACCACTCTACTCCATT................................................... 23 1 1 13.00 13 3 3 2 4 1
...........................................................................................TTTCGAGACCACTCGAATCCATT................................................... 23 1 1 13.00 13 5 8 0 0 0
............................................................................................TTCGAGACCACGCTAATCCATTT.................................................. 23 2 1 13.00 13 0 13 0 0 0
............................................................................................TTCGATACCACTCTAATCCATT................................................... 22 1 1 13.00 13 4 6 0 3 0
...........................................................................................TTTCGCGACCACTCTAATCCATT................................................... 23 1 1 12.00 12 6 2 2 2 0
...........................................................................................TTTCGAGACCACTCTGATCCA..................................................... 21 1 1 12.00 12 2 10 0 0 0
............................................................................................TTCGCGACCACTCTAATCCATT................................................... 22 1 1 12.00 12 2 2 2 5 1
...........................................................................................CTTCGAGACCACTCTAATCCATTT.................................................. 24 2 1 12.00 12 7 5 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCGAT.................................................... 22 1 1 12.00 12 9 3 0 0 0
............................................................................................TTCTAGACCACTCTAATCCAT.................................................... 21 1 1 12.00 12 4 6 2 0 0
...........................................................................................TTTCGAGACTACTCTAATCCA..................................................... 21 1 1 12.00 12 3 8 0 1 0
.........................................................................................CTTTTCGAGACCACTCTAATCCATT................................................... 25 2 1 12.00 12 0 12 0 0 0
...........................................................................................TTTCGAGACCACTCTAATCCTA.................................................... 22 2 1 12.00 12 5 7 0 0 0
.........................................................................................ATTTTCGAGACCACTCTAATCCAT.................................................... 24 1 1 12.00 12 0 12 0 0 0
.........................................................................................ATTTTCGAGACCACTCTAATCCATT................................................... 25 1 1 12.00 12 0 12 0 0 0
...........................................................................................TTTCGAGACCAATCTAATCCATTT.................................................. 24 2 1 11.00 11 2 9 0 0 0
............................................................................................TTCCAGACCACTCTAATCCATT................................................... 22 1 1 11.00 11 3 6 0 1 1
..............................................................................CTAAGAGGTGTAGTTTCGAGAC................................................................. 22 0 1 11.00 11 0 3 7 1 0
...........................................................................................TCTCGAGACCACTCTAATCCA..................................................... 21 1 1 11.00 11 0 8 1 1 1
..........................................................................................TTTTCGAGACCACTCTAATCC...................................................... 21 1 1 11.00 11 1 10 0 0 0
...........................................................................................TTTCGAGACCACGCTAATCCA..................................................... 21 1 1 11.00 11 7 4 0 0 0
...........................................................................................TTTCGGGACCACTCTAATCCA..................................................... 21 1 1 11.00 11 2 8 1 0 0
...........................................................................................TTTCGAGTCCACTCTAATCCAT.................................................... 22 1 1 11.00 11 7 3 1 0 0
............................................................................................TTCGAGACCACTCTAATCCATTTA................................................. 24 2 1 11.00 11 6 5 0 0 0
...........................................................................................TTTCGAGAACACTCTAATCC...................................................... 20 1 1 11.00 11 10 1 0 0 0
...........................................................................................TTTCGAGACCACTCTAATGCATT................................................... 23 1 1 11.00 11 8 1 0 2 0
...........................................................................................TTTCGAGACCACTCTAATCCATTTC................................................. 25 1 1 11.00 11 2 9 0 0 0

Anti-sense strand reads

TGTCTTTTTTCTTTTACGTGAAACGGTAGTTTTGCTTACACGCTTATACGTTAAACCGGTCCGAGGAGCTTGTATTGTGATTCTCCACATCAAAGCTCTGGTGAGATTAGGTAACGGTGTAAAAAGTGTTATACGTTTAATTACGTTCAAAAACGGTATTAAAAT

***********************************..((((.(((...(((((((((...((...((((((.((.(((((....))))).)))))))).))...))))...))))).....))).)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V118

embryo
................CGTGAAAGGGTAGGTTTGC.................................................................................................................................. 19 2 3 0.33 1 1 0
........................................................................................................................AAAAAGTGTTTTACGTTTA.......................... 19 1 4 0.25 1 1 0
................................................................................................................AACGGTGTAAAAAGTGTTGAA................................ 21 2 4 0.25 1 1 0
..................................................................................................................CGGTGGAAAAAGCGTTATA................................ 19 2 6 0.17 1 0 1
...................................................................................................................GGTGGATAAAGTGTTATA................................ 18 2 13 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004762:2569177-2569341 + dwi_1 candidate-rescued ACAGAAAAAAGAAAATGCACTTTGCCATCAAAACGAATGTGCGAATATGCAATTT---------------GGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAATTAA---TGCAAGTTT--TTGCCATAATTTTA-
droVir3 scaffold_13049:23989390-23989464 - dvi-mir-956 Known_mirbase A-----------AAGCGCACCTTACA-G--------------------------------------------------------------------CGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAATT-------------------------------
droMoj3 scaffold_6680:18620848-18620943 - A-----------AAGCGCACCTTACG---------------------------------------------------------------------GCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAATTTC-----CA-GCA--AATACTA--ATATTTG
droGri2 scaffold_15110:9704330-9704409 + ----------------------------------------------------------------------------------------------------GTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAATTTGGTCATTA-GTC--TATGCCA--ATATTT-
dp5 XR_group8:4341368-4341487 + dps_98 candidate-rescued A-----------A-ATGCATTTCGCA-CCGGGATGGATGTG--G-------ATGTGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAATTA------------------------------
droAna3 scaffold_13337:6020203-6020330 - T----------AAAATGCAATTTGCA-ATTC--------------GGCGCCAATT---------------ATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAATTTTACATCTATTTTTTGTTTTG---ATTTTT-
droBip1 scf7180000396518:83531-83632 - T----------AAAATGCAATTTGCA-ATTC--------------GGCGCTAATT--------------CTGCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATCATCTTTAGTTTTATGCAAATT-------------------------------
droKik1 scf7180000302391:1074148-1074247 + C-----------A-ATGCAGTTTGCG-ATGA--------------GAGGCCAGTT---------------GCCG--G-----------CACGAATAAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCATTAACTTTCCCTATATGCAAATT-------------------------------
droFic1 scf7180000454113:2923204-2923304 + --------------ATGCAGTTTGCA-AGGA--------------G-----------------------------AG--------------CACCG-AATGTGTAGTTTCGAGACCACTCTAATCCATTGCATGATCTCTCGGTGTATGCAAATTCG---ACTAGATTTTCTTGCCA---------
droEle1 scf7180000490993:2022543-2022632 + T-----------A---------TGCA-AGGA--------------GACGCCGGTT---------------ACCCAAG--------------CACT-AAAGGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAATT-------------------------------
droRho1 scf7180000779160:75552-75643 + A-----------A-------TATGCA-AGGA--------------GACACTGGTC---------------TGCCGAG--------------CAC-GAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAATT-------------------------------
droBia1 scf7180000302334:215195-215293 - A-----------A-ATGCAATTCGCA-CGGA--------------GACGCTGGTT---------------TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAATT-------------------------------
droTak1 scf7180000414445:436237-436358 + A-----------A-ATGCAATTTGCA-CGGA--------------GACGCTGGTT---------------TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAATTCA---TCTCAATTTTCTTGCCA----ATTA-
droEug1 scf7180000409711:3638268-3638385 - A-----------A-ATGCAATTTGCA-CTGC--------------GATGCTGGTT---------------AACCAAG--------------TACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTCTCGCTGTATGCAAATTCA---TCTCAATTATCTTGCCA---------
dm3 chr3L:11766795-11766912 - dme-mir-956 Known_mirbase A-----------A-ATGCAGTTTGCC-CGGA--------------GACGCCGGTT---------------AACCCAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCAACAATATGCAAATTCA---TCCCGATTTTCTTGCCA---------
droSim2 3l:11468750-11468863 - A-----------A-ATGCAGTTTGCC-CGGA--------------GACGCCGGTT---------------GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAATTCA---TCTCGATTTTCTT-------------
droSec2 scaffold_0:3951737-3951850 - A-----------A-ATGCAGTTTGCC-CGGA--------------GACGCCGGTT---------------GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAATTCA---TCTCGATTTTCTT-------------
droYak3 3L:11795659-11795757 - A-----------A-ATGCAGTTTGCC-CGGA--------------GGAGCCGGTT---------------TACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAATT-------------------------------
droEre2 scaffold_4784:11744372-11744482 - A-----------A-ATGCAGTTTGCC-CGGA--------------GATGCCGGTT---------------TCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAATTCA---TCTGGATTTT----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACAGAAAAAAGAAAATGCACTTTGCCATCAAAACGAATGTGCGAATATGCAATTT---------------GGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAATTAA---TGCAAGTTT--TTGCCATAATTTTA-SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231379771.0037977122933414160843643753712
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................221225487.002254871475137413524481094297
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................221141330.00141330660937073525411602359
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21127572.002757249202190457713041
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21122524.00225248758133513404530
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................20116673.00166731038162166592
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................24112797.0012797813845886263
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................22110791.00107911075435200
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................2116076.0060766759782083
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2315422.0054222990236850104
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2012802.00280216326181731
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................2211964.0019641174777850
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................2311625.001625157142633
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................2311352.001352773575310
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................2211128.001128731051220
...........................................................................................................TTCGAGACCACTCTAATCC............................................................1911100.001100407693000
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................2011095.001095261062610
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................221865.0086580956000
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................191861.00861595252347
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231850.0085031147223395
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................211742.00742536199331
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................211662.006626584000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241581.00581227354000
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................211579.00579247331100
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201552.005527541400
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221517.0051717229714304
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................221503.0050347027312
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241422.0042296312941
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................241334.003343325033
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................251264.00264162101100
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................221229.002297221100
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................231209.0020913767320
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231204.0020439157620
............................................................................................................TCGAGACCACTCTAATCCA...........................................................191199.001992197000
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191196.0019610184020
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................241195.0019510785201
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................211155.001558269301
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................231136.001360129223
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................181134.001349935000
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................191126.001261124001
.........................................................................................................GTTTCGAGACCACTCTAATCCT...........................................................221117.001178037000
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................211109.001099100000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................21192.00927318100
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18190.00906920100
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18181.0081971010
..........................................................................................................TTTCGAGACCACTCTAATCCAAA.........................................................23180.00806614000
.........................................................................................................GTTTCGAGACCACTCTAATCCAA..........................................................23165.00653332000
............................................................................................................TCGAGACCACTCTAATCC............................................................18165.00651847000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................25164.00642538001
...............................................................................................................AGACCACTCTAATCCATT.........................................................18159.0059158000
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................22154.00543618000
.........................................................................................................GTTTCGAGACCACTCTAATC.............................................................20150.00501831100
.........................................................................................................GTTTCGAGACCACTCTAATCCAC..........................................................23149.0049490000
...........................................................................................................TTCGAGACCACTCTAATCCAG..........................................................21143.0043358000
.........................................................................................................GTTTCGAGACCACTCTAATCCATTT........................................................25141.00411031000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................24141.00411031000
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18138.0038038000
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21130.0030030000
..........................................................................................................TTTCGAGACCACTCTAATCCATAA........................................................24130.00301216110
..........................................................................................................TTTCGAGACCACTCTAATCCATTTA.......................................................25127.00271017000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23126.0026422000
...........................................................................................................TTCGAGACCACTCTAATCCT...........................................................20125.0025223000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAAA......................................................26124.0024213000
.............................................................................................CTAAGAGGTGTAGTTTCGAGACCACT...................................................................26120.0020121610
..........................................................................................................TTTCGAGACCACTCTAATCCATTTAA......................................................26119.0019136000
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................24117.0017611000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTTT......................................................26115.0015114000
..........................................................................................................TTTCGAGACCACTCTAATCT............................................................20115.0015105000
...........................................................................................................TTCGAGACCACTCTAATCCAAA.........................................................22115.001596000
.............................................................................................................CGAGACCACTCTAATCCATTT........................................................21114.0014014000
......................................................................................................GTAGTTTCGAGACCACTCTAATCCATT.........................................................27113.001385000
..........................................................................................................TTTCGAGACCACTCTAATT.............................................................19113.001394000
..........................................................................................................TTTCGAGACCACTCTAATCCTA..........................................................22112.001257000
.............................................................................................CTAAGAGGTGTAGTTTCGAGAC.......................................................................22111.001103710
...........................................................................................................TTCGAGACCACTCTAATCCATTTA.......................................................24111.001165000
droVir3
A-----------AAGCGCACCTTACA-G--------------------------------------------------------------------CGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAATT-------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231493805.0049380515446983209334956483639170110411323334921255163111919537756484059939371348305146743742682355447524635814214812342981116108461814929951925139411188763026116563443185951422918138235451013786772915017416831650
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................221441226.00441226113638559212352227042231131110313225194545811241352945164223404542185323592612391077359383731531427234335799221211432148873702291781488326652134759702053426060277494121541549518928894874532024127818861908
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................221308935.003089351050935047382731976720003020197815602617187105238189020791614715205173166698202187311834148982418110321431766121041350728477755022631458349105365585354574692041137614979735555922520019912981332
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21160053.006005319066751136741504000000003261934710111873336528846803930291135827236100012095560010000120003622881392213911582801201077827144716562152118385205647306284
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21145732.00457327602307284699250400000064060113730423117115085464213664292214780310241000021401100000000000029167001001716710133024332452250785944729501092725
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................20142438.00424382211193013295130200000000186184481181027803452612972291798624141900110110000000000000000141080000816200265039963554793143935615124450
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................23118405.001840566613033551140002000000182103298441380173186103081794116170800100680130000010000001139322314924233035621044375272310904934542475147
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................24114197.001419757723521819802000000001621041354323101251524308773410140700000521260000000000001051111419501320401171103736515809504783921224430
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................21110785.00107856431051430000000000137246309530001043201000005000000000000000663810013020000489247702123
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................2217695.007695714844419410000000000310200002000000000010000010000000000000000017111200000011110300031
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2015707.0057075741644160020000000039211511141422041062112240200000180000000000000008513930288061100016414065352810005
...........................................................................................................TTCGAGACCACTCTAATCC............................................................1912899.0028999113514073000000000027122711703939401001820000011050000000000000003128010202302049484988544000051
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................1912866.002866126255645100100000002217561080463013203107320300000290000000000000001381170207000000738991148816100041
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................2312733.002733173610326241000000000014010005930010000201000009000000000000000141125420035020000162042112162201035
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................2211588.001588108476176250100000000441020236400000200000000030000000000000006486300150000107820332500140
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................2111363.00136312797052000000000011000001000000000000000000000000000000000001000200000000010000000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................2211336.0013361170531110000000000100010000000000000000000000000000000000002153200500000055558101024
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................2011136.00113616110671000000000015011002010010010100000000000000000000000437000200001004274300000
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................221802.0080221113197201000000002424320541000103100000000200000000000000024666001002023030355372232512053
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201777.007771027061000000000031012105221000140000000001000000000000000855000101000033140000021
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................231622.00622171627010000000000111020142000101500010000030000000000000001327000500000010181848101100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................241581.005811953237000000000003312120423000001210000000400000000000000012170008000000517143810500000
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221552.005526622920000000000074223101400002022000000001000000000000000021230016020110191624459501014
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................181545.0054512431500000000000116003408190000201010100000000000000000000012989100000000037473756243400001
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231521.0052177223601000000000104044201010110101620010000080000000000000000017000110320001315182691611035
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231427.00427788184000000000004604110480001023010100000200000000000000011170002000010381071918800123
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241381.0038171213500000000000125152308151010203120000100700000000000000000510012020766719794701155
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................231371.00371257132800000000000010111010000000000000000000000000000000001238500001000023545200000
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................221347.00347703370000000000001000000000000000000000000000000000000000001000000000000100000000
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................241339.003391422500000000000041040101200000001000000003000000000000000213000030410001220925101000001
...........................................................................................................TTCGAGACCACTCTAATC.............................................................181338.003389168100000000000410100062000000100000000010000000000000004110000000100012172038241600001
............................................................................................................TCGAGACCACTCTAATCCA...........................................................191338.00338003210000000000020000002000000000000000000000000000000000001001000000002054000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................251301.003011451932000000000001150110052000001100000000000000000000000003312000500000054131113900000
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................231291.002919021210000000000120011044010013223000000030110000000000000518001403000100120000031
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................221283.00283182101900000000000000000000100000000000000000000000000000003132201701100016320301052
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191256.00256501960000000000035014007510001071003000003000000000000000011020600100000000200100
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................211250.002502229120000000000014000000000000000000000000000000000000000000000000000010000100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................241247.002476017500000000000430011014000000402000000000000000000000003025500500000100301000102
...........................................................................................................TTCGAGACCACTCTAATCCAG..........................................................211246.002462181030000000000000000000000000000000000000000000000000000008100000000010110200010
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................211207.0020795648000000000001300010400000001000000000100000000000000010220003000000221112300000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241156.001566012700000000000010010001000100000000000000000000000000000014000100200000101000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................231117.001173224600000000000000000000000000000000000000000000000000001123100102000021102200000
............................................................................................................TCGAGACCACTCTAATCC............................................................181112.0011273940000000000000000001000000010000000000000000000000000000000000000003030000000
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19195.009530800000000000002000000000000010000000000000000000000000110000100000002012100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................25171.0071222100000000000100100020000100200000000000000000000000000020001010022110232800212
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................24165.006513070000000000001000001100000000000000000000000000000000003000200020147477010202
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................21165.0065272150000000000043101206100000000000000001000000000000000000000200000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCT............................................................20164.0064351200000000000000000000000010000000000001000000000000000002000000000000011200000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18156.005630430000000000010000000000000000000000000000000000000000004100000100010010100000
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18156.005620380000000000033002001210010000000000000000000000000000001000000000000002000000
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21154.005481350000000000000000000000000000000000000000000000000000001000200000011004001000
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................22153.005321500000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18147.004700440000000000000000001000000000000000000000000000000000000000000000010000100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTCT.......................................................25144.0044210180000000000000000000000000000000000000000000000000000011000000000000210000000
..........................................................................................................TTTCGAGACCACTCTAATCCCC..........................................................22143.004336600000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTTT......................................................26141.004118280000000000010000000000000000000000000000000000000000003000000000011114100000
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................20133.003371160000000000001010001200000000000000000000000000000000000000100000000110000010
..........................................................................................................TTTCGAGACCACTCTAATCCATCT........................................................24132.003291140000000000000000000000000000000000000000000000000000002000000000011211000000
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................21127.002740220000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATT.............................................................19126.002610070000000000010000100000001000000000000000000000000000000000000000021010200000
droMoj3
A-----------AAGCGCACCTTACG---------------------------------------------------------------------GCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAATTTC-----CA-GCA--AATACTA--ATATTTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................221173846.00173846165223281231651918116
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231170559.00170559163915301141662736061
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................22168465.006846566475640761031765
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21120520.0020520198340111811646
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................21113634.001363413602000131
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................2119617.00961792520491351
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2315160.00516049540375191
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................2413908.00390837931114108
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................2013850.0038503780023362
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2011862.0018621815013043
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................2011549.001549153901009
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201808.0080880600101
...........................................................................................................TTCGAGACCACTCTAATCC............................................................191506.0050650300102
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................221411.0041141000001
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231362.00362346001015
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................231300.00300256000368
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191277.0027727300103
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241264.00264250010013
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221250.00250232001017
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231202.0020219210018
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................231181.0018117800003
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................191164.00164139081043
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................241141.0014113600005
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................221139.0013913501021
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................241139.0013913900000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241138.0013813800000
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................221138.00138105001248
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................231126.0012612100005
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................191120.0012011900001
............................................................................................................TCGAGACCACTCTAATCCA...........................................................191105.0010510500000
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................24188.00888500003
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................23170.00707000000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18165.00656500000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................25155.00555400001
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................22140.004020000200
............................................................................................................TCGAGACCACTCTAATCC............................................................18139.00393900000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18136.00363600000
............................................................................................................TCGAGACCACTCTAATCCATTA........................................................22131.00313100000
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................21131.00313100000
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18131.00313100000
.............................................................................................................CGAGACCACTCTAATCCATTT........................................................21123.00232300000
...........................................................................................................TTCGAGACCACTCTAATCCATTGG.......................................................24122.00222200000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................23122.00222100001
..........................................................................................................TTTCGAGACCACTCTAATCCATTGG.......................................................25121.00212100000
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21120.00202000000
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................22118.00181800000
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................24117.00171500002
..............................................................................................................GAGACCACTCTAATCCATTT........................................................20116.00161600000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................18116.00161600000
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21116.00161600000
............................................................................................................TCGAGACCACTCTAATCCATTG........................................................22115.00151500000
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18115.00151500000
............................................................................................................TCGAGACCACTCTAATCCATC.........................................................21114.00141400000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................25113.00131300000
...........................................................................................................TTCGAGACCACTCTAATCCATAA........................................................23111.0011800003
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................2219.009800100
............................................................................................................TCGAGACCACTCTAATCCATTC........................................................2219.009900000
...........................................................................................................TTCGAGACCACTCTAATCCATTTA.......................................................2418.008800000
........................................................................................................AGTTTCGAGACCACTCTAATCCAT..........................................................2418.008800000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................2218.008700001
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................2117.007700000
........................................................................................................AGTTTCGAGACCACTCTAATCCATT.........................................................2517.007700000
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................2117.007700000
...........................................................................................................TTCGAGACCACTCTAATCCATTTG.......................................................2417.007700000
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................2117.007500020
..........................................................................................................TTTCGAGACCACTCTAATT.............................................................1916.006600000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTA.......................................................2516.006600000
...........................................................................................................TTCGAGACCACTCTAATCCATTTTT......................................................2516.006600000
..........................................................................................................TTTCGAGACCACTCTAATTT............................................................2016.006600000
..........................................................................................................TTTCGAGACCACTCTAATCCATTGGC......................................................2615.005500000
.................................................................................................GTAGTGTAGTTTCGAGACCACTCTA................................................................2515.005400001
.........................G---------------------------------------------------------------------GCGTAGTGTAGTTTCGAGACCACTCTA................................................................2815.005300002
..........................................................................................................TTTCGAGACCACTCTAATCCATAA........................................................2415.005500000
droGri2
----------------------------------------------------------------------------------------------------GTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAATTTGGTCATTA-GTC--TATGCCA--ATATTT-SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................2318893.0088938169724
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................2218406.0084067707699
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................2213805.0038053660145
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................2111043.001043100934
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................211625.006256241
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................211491.0049146823
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................231346.0034632620
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................241310.0031029614
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................201173.001731703
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................20178.0078771
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................20170.0070700
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................20149.0049481
...........................................................................................................TTCGAGACCACTCTAATCC............................................................19131.0031310
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................22127.0027270
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................24120.0020191
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................23117.0017170
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................19116.0016160
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................23116.001679
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................21114.0014131
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................23114.001486
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................22113.0013121
..............................................................................................................GAGACCACTCTAATCCATT.........................................................19112.0012120
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18111.0011110
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................23110.0010100
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19110.0010100
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................2418.00880
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................2217.00752
..............................................................................................................GAGACCACTCTAATCCAT..........................................................1816.00660
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................2416.00651
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................2416.00660
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................2516.00660
............................................................................................................TCGAGACCACTCTAATCCA...........................................................1915.00550
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................2315.00550
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................2115.00550
...............................................................................................................AGACCACTCTAATCCATT.........................................................1815.00550
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................2314.00440
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................2413.00330
............................................................................................................TCGAGACCACTCTAATCC............................................................1813.00330
..........................................................................................................TTTCGAGACCACTCTAATCCATGG........................................................2412.00220
........................................................................................................AGTTTCGAGACCACTCTAATCCATT.........................................................2512.00220
.........................................................................................................GTTTCGAGACCACTCTAATCCATTT........................................................2512.00220
..........................................................................................................TTTCGAGACCACTCTAATCCATTTG.......................................................2512.00220
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................2312.00220
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................1812.00220
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................2112.00220
..............................................................................................................GAGACCACTCTAATCCATTT........................................................2012.00220
..........................................................................................................TTTCGAGACCACTCTAATCCCG..........................................................2211.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATTTTG......................................................2611.00110
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................2211.00110
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................2411.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATTCG.......................................................2511.00110
.......................................................................................................................CTAATCCATTCCATCGCTTTTCATTG.........................................2611.00110
..........................................................................................................................ATCCATTCCATCGCTTTTCA............................................2011.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATAA........................................................2411.00110
........................................................................................................AGTTTCGAGACCACTCTAATC.............................................................2111.00110
................................................................................................................................................................ATTA-GTC--TATGCCA--ATATT..1911.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATTGTG......................................................2611.00110
...............................................................................................................AGACCACTCTAATCCATTT........................................................1911.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATGTT.......................................................2511.00110
...........................................................................................................TTCGAGACCACTCTAATCCT...........................................................2011.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATTGG.......................................................2511.00110
............................................................................................................TCGAGACCACTCTAATCCATTTT.......................................................2311.00110
...........................................................................................................TTCGAGACCACTCTAATCA............................................................1911.00110
......................................................................................................GTAGTTTCGAGACCACTCT.................................................................1911.00110
.....................................................................................................TGTAGTTTCGAGACCACTCTAATCCATT.........................................................2811.00110
............................................................................................................TCGAGACCACTCTAATCCG...........................................................1911.00110
......................................................................................................GTAGTTTCGAGACCACTCTAATC.............................................................2311.00110
..........................................................................................................................ATCCATTCCATCGCTTTT..............................................1811.00110
......................................................................................................GTAGTTTCGAGACCACTCTA................................................................2011.00110
..........................................................................................................TTTCGAGACCACTCTAATCCAGG.........................................................2311.00110
....................................................................................................GTGTAGTTTCGAGACCACT...................................................................1911.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATTGGC......................................................2611.00110
...........................................................................................................TTCGAGACCACTCTAATCCATTCT.......................................................2411.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATTAT.......................................................2511.00110
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................2011.00110
....................................................................................................GTGTAGTTTCGAGACCACTCTAATC.............................................................2511.00110
....................................................................................................GTGTAGTTTCGAGACCACTCTAA...............................................................2311.00110
.........................................................................................................GTTTCGAGACCACTCTAATCCT...........................................................2211.00110
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................2211.00110
.........................................................................................................GTTTCGAGACCACTCTAAT..............................................................1911.00110
.........................................................................................................GTTTCGAGACCACTCTAATCCATTTT.......................................................2611.00110
.............................................................................................................CGAGACCACTCTAATCCATTT........................................................2111.00110
..........................................................................................................TTTCGAGACCACTCTAATCCATAG........................................................2411.00110
.............................................................................................................CGAGACCACTCTAATCCATTCATC.....................................................2411.00110
..........................................................................................................TTTCGAGACCACTCTAATCCAAC.........................................................2311.00110
...............................................................................................................................................TGTATGCAAATTTGGTCA.........................1820.50110
..............................................................................................................................................TTGTATGCAAATTTGGTC..........................1820.50110
dp5
A-----------A-ATGCATTTCGCA-CCGGGATGGATGTG--G-------ATGTGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAATTA------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................232165242.00330484388752781081088706829312693716282019
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................222122152.502443052309121311047334102128393129101714
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................22254021.5010804324043789532493064383651310489
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21212992.0025984628246238244482391040
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21212110.002422031212043021325156264011
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................2128908.5017817161778417018000
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................2024775.00955010968279412101337000
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................2423990.50798184167861025031672012
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2322872.50574563949466842858002
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2022113.0042266541231150913000
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................202785.0015701156502002000
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................202601.5012030120101001000
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................222557.5011155943979400003000
...........................................................................................................TTCGAGACCACTCTAATCC............................................................192522.5010459494306011000
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................222406.0081268727110114000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................232383.507679682150429136000
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................222331.50663565700001000
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................212280.505612153802000000
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................222225.50451045100000000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................242212.50425641612000000
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................222201.50403725567206012000
..............................................................................................................GAGACCACTCTAATCCATT.........................................................192184.50369335611134000
............................................................................................................TCGAGACCACTCTAATCCA...........................................................192172.50345234300000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................242169.0033815302010119000
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................232163.003263228905000000
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................232136.502738245280010000
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................232129.002581022826039000
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................222126.00252622406338020
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................192122.502459313825043000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................24299.50199019612000000
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................23277.00154015301000000
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19272.00144114201000000
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................21270.00140883247000000
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................21265.001301711201000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................25253.00106139100002000
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................24248.5097118501000000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18248.009629400000000
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21243.008618401000000
............................................................................................................TCGAGACCACTCTAATCC............................................................18238.507707700000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................24232.006435514010000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................22231.0062402200000000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................18230.0060243600000000
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18228.005625400000000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................23228.0056103816010000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23225.505105100000000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18225.0050182803010000
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................21220.504113900001000
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18217.003403400000000
.........................................................................................................GTTTCGAGACCACTCTAATC.............................................................20216.003213100000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAA..........................................................23215.003022800000000
.............................................................................................................CGAGACCACTCTAATCCATTT........................................................21214.502902900000000
.........................................................................................................GTTTCGAGACCACTCTAATCCT...........................................................22213.502712501000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................25213.502722400001000
..........................................................................................................TTTCGAGACCACTCTAATCCATTGG.......................................................25212.502502500000000
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21211.002202200000000
............................................................................................................TCGAGACCACTCTAATCCATTA........................................................22210.502102100000000
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................2229.501961100011000
..........................................................................................................TTTCGAGACCACTCTAATCCAAA.........................................................2329.001811700000000
...........................................................................................................TTCGAGACCACTCTAATCCATTGG.......................................................2429.001801800000000
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................2429.001801701000000
..........................................................................................................TTTCGAGACCACTCTAATTT............................................................2028.501721500000000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................2128.501731201001000
........................................................................................................AGTTTCGAGACCACTCTAATCCATT.........................................................2528.501701600001000
..........................................................................................................TTTCGAGACCACTCTAATCT............................................................2027.501551000000000
...........................................................................................................TTCGAGACCACTCTAATCCT...........................................................2026.501311200000000
..............................................................................................................GAGACCACTCTAATCCATTT........................................................2026.001201200000000
...........................................................................................................TTCGAGACCACTCTAATTT............................................................1936.001861101000000
.........................................................................................................GTTTCGAGACCACTCTAATCCATTT........................................................2526.001201200000000
..................................GGATGTG--G-------ATGTGGCTGG.............................................................................................................................1826.001201200000000
...........................................................................................CACAGCCAGGTGTAGTTTCGA..........................................................................2126.001201200000000
..................ATTTCGCA-CCGGGATGGATGTG--...............................................................................................................................................2226.00120800004000
......................................................................................................GTAGTTTCGAGACCACTCTA................................................................2025.501101100000000
..........................................................................................................TTTCGAGACCACTCTAATT.............................................................1925.50114700000000
............................................................................................................TCGAGACCACTCTAATCCATTG........................................................2225.501101100000000
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................2025.501101000001000
......................................................................................................GTAGTTTCGAGACCACTCTAATCCATT.........................................................2725.001001000000000
............................................................................................................TCGAGACCACTCTAATCCATTTT.......................................................2325.001001000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATAA........................................................2424.5092600100000
droAna3
T----------AAAATGCAATTTGCA-ATTC--------------GGCGCCAATT---------------ATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAATTTTACATCTATTTTTTGTTTTG---ATTTTT-SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................23146802.004680243397193175762427192
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................22139955.003995536886153294812095311
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................22122813.00228132111137914232101265
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21111068.00110681010460713574517
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................2114914.00491446833422214924
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................2013975.003975352827864211110
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................2113436.0034363419002150
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................2411522.00152214512016503
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2011279.0012791239208228
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2311241.00124111843012357
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................221649.00649631100161
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................221546.00546506291190
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................201429.0042942710010
...........................................................................................................TTCGAGACCACTCTAATCC............................................................191389.0038938330102
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................231277.0027727120130
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201266.0026626201030
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................211245.00245226302122
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................211201.0020119710030
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221192.0019217811471
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................191179.001791182832037
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231175.00175149205181
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................221134.00134291050000
............................................................................................................TCGAGACCACTCTAATCCA...........................................................191105.0010510500000
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................221105.0010510500000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................24196.00969600000
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................22190.00908900100
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................24180.00806972101
..............................................................................................................GAGACCACTCTAATCCATT.........................................................19176.00767501000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................22174.00747310000
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................23168.00685951120
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21158.00585620000
.........................................................................................................GTTTCGAGACCACTCTAATCCAA..........................................................23154.00545400000
........................................................................................................AGTTTCGAGACCACTCTAATCC............................................................22150.00504900100
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................22149.004930140140
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19146.00464600000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................24139.00393800100
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................24137.00373700000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................23136.003614190210
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................25134.00343210001
............................................................................................................TCGAGACCACTCTAATCC............................................................18132.00323200000
.........................................................................................................GTTTCGAGACCACTCTAATCCT...........................................................22128.00282800000
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................23127.00272700000
.........................................................................................................GTTTCGAGACCACTCTAATC.............................................................20122.00222200000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18121.00212100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................24121.00212010000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23120.00201900010
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18119.00191810000
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................21116.00162140000
..........................................................................................................TTTCGAGACCACTCTAATCT............................................................20116.00161410001
...........................................................................................................TTCGAGACCACTCTAATCCT...........................................................20113.00131300000
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21113.00131300000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18113.00131210000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................21113.0013600070
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18112.00121200000
..........................................................................................................TTTCGAGACCACTCTAATCCAAA.........................................................23112.00121200000
.............................................................................................................CGAGACCACTCTAATCCATTT........................................................21112.00121200000
.........................................................................................................GTTTCGAGACCACTCTAATCCATTT........................................................25110.00101000000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................23110.00101000000
............................................................................................................TCGAGACCACTCTAATCCATTA........................................................2219.009900000
..............ATGCAATTTGCA-ATTC--------------GGC..........................................................................................................................................1919.009600003
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................2119.009800010
...........................................................................................................TTCGAGACCACTCTAATCCATTTA.......................................................2418.008800000
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................2418.008350000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................1818.008710000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................2517.007250000
.........................................................................................................GTTTCGAGACCACTCTAATCCAG..........................................................2316.006600000
..........................................................................................................TTTCGAGACCACTCTAATTT............................................................2015.005400010
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................2015.005310010
...........................................................................................................TTCGAGACCACTCTAATTT............................................................1915.005400100
..........................................................................................................TTTCGAGACCACTCTAATCCATAA........................................................2415.005320000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTTT......................................................2615.005500000
...........................................................................................................TTCGAGACCACTCTAATCCC...........................................................2015.005500000
............................................................................................................TCGAGACCACTCTAATCCAA..........................................................2015.005500000
droBip1
T----------AAAATGCAATTTGCA-ATTC--------------GGCGCTAATT--------------CTGCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATCATCTTTAGTTTTATGCAAATT-------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C-----------A-ATGCAGTTTGCG-ATGA--------------GAGGCCAGTT---------------GCCG--G-----------CACGAATAAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCATTAACTTTCCCTATATGCAAATT-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
--------------ATGCAGTTTGCA-AGGA--------------G-----------------------------AG--------------CACCG-AATGTGTAGTTTCGAGACCACTCTAATCCATTGCATGATCTCTCGGTGTATGCAAATTCG---ACTAGATTTTCTTGCCA---------SizeHit CountTotal NormTotal
No Reads
droEle1
T-----------A---------TGCA-AGGA--------------GACGCCGGTT---------------ACCCAAG--------------CACT-AAAGGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAATT-------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A-----------A-------TATGCA-AGGA--------------GACACTGGTC---------------TGCCGAG--------------CAC-GAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAATT-------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-----------A-ATGCAATTCGCA-CGGA--------------GACGCTGGTT---------------TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAATT-------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-----------A-ATGCAATTTGCA-CGGA--------------GACGCTGGTT---------------TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAATTCA---TCTCAATTTTCTTGCCA----ATTA-SizeHit CountTotal NormTotal
No Reads
droEug1
A-----------A-ATGCAATTTGCA-CTGC--------------GATGCTGGTT---------------AACCAAG--------------TACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTCTCGCTGTATGCAAATTCA---TCTCAATTATCTTGCCA---------SizeHit CountTotal NormTotal
No Reads
dm3
A-----------A-ATGCAGTTTGCC-CGGA--------------GACGCCGGTT---------------AACCCAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCAACAATATGCAAATTCA---TCCCGATTTTCTTGCCA---------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................23174829.0074829000004000141230000010363250010630402650001962201526635629341001040004660000000000000000000000021310000051238081103658981022825108004573999131513917455750330115280121184004053731412166211110030011392710210000000040841060143104628233426327892200200176225012362813492002567310718420029345170040001013631547659811641491253151407404761838000119270013494043511030158267824117321130521090304101130066382314100271020020001645193569497111233891274920230876114800011706100030002026323542420475437499342536131123
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................22141884.00418840000022000220000000203617010021543317210077210031511649113710100011749000000000000000000000001600200010838332003737491178118910321346611521451603240022112212070112471371615172112186000000200048013000000010000046660640045189170343158502180000014213907681731786001519053900000041921600113000021079644257875257150349222129900001314007165024821000123900422505110402001924220010300630018629546001001311110128025824912153821102204597750001047520001100101328532321171276824082134401120
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................22124405.002440500000120002102000000031016000000000004222000141142302181000005549100000000000000000000103000001521801131311394104180530030112441693281012101005021604710051391210240000000002031063100000000000223904000106181301102010000049740574609500082421760200202441260030010000112458339048934461244301218031600011913002418010520010190331119901041111000211000010011313118459380001111330321169423562635101770803423850009315011030001196362575785175915631337503240
..........................................................................................................TTTCGAGACCACTCTAATCCATTATC......................................................26118871.00188710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118357036000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTATC......................................................25111417.0011417000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000075143903000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................2116447.006447000008000011000000000202001000000001000000305010040000005535200000000000000000002101000000015022013915020052390020117230600502030001000001272252003010000000000700100000000100006301200123104110760000081541088180001580510000004814001000000481191554194471847126110000251600150264000312770030001010000010100000100024263123800100000208323501126842169013314000018100000000001821481172273228226100020
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................2113557.003557000002000001000000000002000000000003000000101000030000002624100000000000000000000003000000001000044471004060001386001016005011100010012124801106400000000000000000000000000311040061415202057000001299769120001040190000001380000000001464566875327211120100001050020015900001139111810000000001000000000000103041400000100001106034051295075770001320000000000112141799233208185000010
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................2012193.002193000001000100000000000002000014280000000000000010010000002919100000000000000000100002000000102010132710004090000046010010000000000018123733411290215623000000000040000000000000002804001942110100000046743450006401200000053000000000161441796221018010000000010021073000006400840000000000000000010001301060400000000000117014101056023230000200000000000401159575611453001000
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................1911587.001587000000000000000000000100000033160000000000000000000000004200000000000000000000000000000000000004500000000000110000500000001000600162549000000210000000000100000000000000022000007314004100000518192200019080000000100000000022511500130100000010600010350000011001600000000000100000000002021001000000100006307000128061300001000000000004018711410000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................241717.007170000010000000000000000000000000000000000000010000100000000000000000000000000000000000000002000013140001520000012010040010000000001000000000000000000000100000000000000043020037220000100000221122100023080000006300000000081385623120211100000122400100290000085003600000000000000000000000002001000000000002301900201008700000000000000002304420343020000000
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................201479.004790000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000010000790000000000002000020000000000000010270011000000000000000000000000000003020004610100000000261123000303000000100000000001041402200100200000011100000023000001001190000000000000000000000000000000000000000100300006088000000000000000013030820208000000
...........................................................................................................TTCGAGACCACTCTAATCC............................................................191452.004520000000000000000000000000000010200000000000000000000000083000000000000000000010000000000000000076000002000000102006010000000026051294212900063100000000000000000000000000039000002200005000000031000005000000000000000000066724300000000000000000006000001001000000000000000100000000000000000000000000010000501200000000000000001042006000000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................231442.0044200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000010000000000030000000000000000010000000000000000000000000000000011000010000000000000532020003000000002000000000001151000100000000186143000106000007009000000000000000000000000001010000000000110020000200500000000000000005071567000000
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................231378.00378000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000200006160000010000010000030000000000100000010001000000000000000100000000000010030012200100400000192220006040000001710000000005145141242230000006120030014000003300310000000000000000000000000000100000000000240401008055000000000000000050235131210000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241290.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000100020000000000010000000000000000000000000000000000000000000000000003000000061000004020000000000000000000910002000000001109100100100000070030000000000000000000000000000000000000000100200000001000000000000000020525115000000
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231188.001880000030000102000000000100000000000000000001010000000000000000000000000000000000000010000000000022000001000001000002000000000000000000000000000000000000000000000000000001000201000000000001600000702000000310000000001314200010100000015140011030000050011000000000000000000000000000100000000000010020000302300000100000000004112817118000000
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231183.0018300000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000030000000000001000000000000000000000000000000000000000000000000000000011000000010000000000031100004000000001000000000000500001010000005852000006000008008000000000000000000000000000010000000000000000000200100000000000000001052554000000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................181155.00155000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000200000000000000000000000000000200051388000002000000000000000000000000001001001000010000000024100000300000000010000000000117300000000000001000000000000000000000000000000000000000000000000000000001020000200000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................241155.0015500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000007372000002000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................181151.00151000000000000000000000000000000000000000000000000000000001100000000000000000010000000000000000000100000200000000000000000000000000001889000002000000000000000000000000000000000000000000000004300000200000000000000000000012500000000000032000001000000001000000000000000000000000000000000000000001000000200000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAT.......................................................251150.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008465000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCATC..........................................................221142.0014200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009448000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221136.001360000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000021000002000000000000000020000000000100000000000000000000000000000000000100000210000010000010210000401000000010000000002312210110200000033000003000006006000000000000000000000000000000000000000100020001302500000000000000000016512118000000
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................211126.00126000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000007300000000000000000000001000000000000000100000000000000000000000000000100100144100000000002221000040100000001000000000201610001000000000000000600000140080000000000000000000000000000000000000000010000002002000000000000000010421484000000
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191100.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100004000010000000001000000000000102000000100000000000000000000000000000000000000130000040000000102110002000000001000000000000216010000000000000000070000040011000000000000000000000000000000000000000000010000200000000000000000000011224000000
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................22192.009200000300000000000000000000000000000000000000000000000000000000000000000000000000000000001000000420000040000001001010000000000000100000000000000000000000000000000000000000000000000000000001000003000000001300000000010124000100100000120000050000000060000000000000000000000000000300000000000100110001001000000000000000050122123000000
...........................................................................................................TTCGAGACCACTCTAATCCATTAT.......................................................24191.009100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................23190.009000000000000000000000000000000000000000000000000000000000313420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100100000000000000000000010300000010000000000002000010000000000000002000001002000000000000000000000000000000000000000001010000001100000000000000000020010000000
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................22181.00810000010000000000000000000000000000000000000000000000000000000000000000000000000000000000101000001000001000001000000000000000000000000000000000000000000000000000000000000000000000030000051100000300000000100000000000160000000000000147000007000003003000000000000000000000000000000000000000000010000200300001000000000001033033000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................24178.007800000000000000000000000000000000000000000000000000001000171600000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000010100100000002000002120000000000000000000000000034001210000000000000001000003001000000000000000000000010000100000000000100011100002000000000000100001010032000000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23174.007400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000003926000000000002000000000000000000000000000000000000000000000000000100000000000000000001001100000000
............................................................................................................TCGAGACCACTCTAATCCATTATC......................................................24159.005900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................23158.00580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000102000000000000000000000000000000000000000000000000000001000100000000000000000000002000000000000000001136100000000000000000000000001002000000000000000000000000000000000000000000040000101000000000000000000000100000000
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................22146.0046000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000001000000000000000000000000000000000100000000000000000100000040000000010000000000014200010200000010000103000000003000000000000000000000000000000000000000000040000101200000001000000001040110000000
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................22143.0043000000000000000000000000000004001000000000000000000000008210000000000000000000000000000000000000100000000000000000300000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000005200000000000000000000000001001000000000000000000000000000000000000000000000000100100000000000000000131101000000
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................20140.0040000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000011100000000000130000030100000020000000000021100000200000000000003000004003000000000000000000000000000000000000000000000000200000000000000000000001203000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................23132.0032000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010000000200000000000000000000000000000010000000000000000000001000000000000000010000002000000000000100000000000000000000000000015000020100000000000000000001001000000000000000000000000000000000000000010000000000000000000000000001021023000000
..........................................................................................................TTTCGAGACCACTCTAATCCATAT........................................................24129.002900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CGAGACCACTCTAATCCATTATC......................................................23126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................GAGACCACTCTAATCCATTATC......................................................22225.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................20124.0024000000000000000000000000000000000000000000001000000000002000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000100000000000000000008010010001000000000001000000002000000000000000000000000000000000000000000000000000100000000000000000000011000000
...........................................................................................................TTCGAGACCACTCTAATCCATTGC.......................................................24124.002400000000000000000000000000000000000000000000000000000000121100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................22122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000110000000000000000000000000000300000000000000000000000002006000000000000000000000100000000000010000000020000001100000000000000000010001000000
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................22121.0021000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000002400000000000000000001000006002000000000000000000000000000000000000000000010000001100000000000000000000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................21120.0020000000000000000000000000000000000000000000000000000000005000000000000000000001000000000000010000000000000000000000000000000000000000200000000000000000000000000000000000000000000006000001000000000000000000000000000001100010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................21120.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000001000010000000000000000000000000000100000000000000000003100000000000000000001100002000000000000000000000000100000000000000000100000000201100000000000000000010000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTGATC.....................................................27120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCATTATC......................................................27116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................24115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000101000000000000000000000000000000000000000000000000100000000000001000002000000000000000000000000000000000000000000010000000100000000000000000002011010000000
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................21115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000030040000000000000000003000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................TTTCGAGACCACTCTAATT.............................................................19115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000004400000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000100000000000000001000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTGTC......................................................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTGC.......................................................25114.0014000000000000000000000000000000000000000000000000000000005500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200000000
.........................................................................................................GTTTCGAGACCACTCTAATC.............................................................20113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000400000000000000000000000000000000000000002000001000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................21113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000004100000000000000000000000001003000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAA...............................................................17113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005300000000000023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTCTC......................................................26112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000084000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCT............................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000001300000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000010000100000000000000000000001000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCATC.........................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................20111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200001000000000000000000000000000000000000000010000000010000010000000000000000000000000000000000011000000000000000000000000000000000000000000000000000010000010000000000000000000000000000100000000
...........................................................................................................TTCGAGACCACTCTAAT..............................................................17111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATAT........................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000063000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-----------A-ATGCAGTTTGCC-CGGA--------------GACGCCGGTT---------------GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAATTCA---TCTCGATTTTCTT-------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231933164.009331643105858892497851642422021741126836204247615805000
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................221740905.00740905256969715527084103323028264201123394835603000
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................221458863.0045886314524278471582511023104084682503125148312803000
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................201107228.0010722844110414665493295363257250000000
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21178001.0078001241739988142318502235531970201000
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................22151597.005159725649200213650000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21131917.0031917115266854492358200017669378131600000
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................24116326.0016326761560438924000124010000000
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2319043.0090433486751561600087210000000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................2317825.007825297341444100010000000000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................2217510.00751015717831150010000000000
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................1916535.0065352462593642111152717220000000
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................2215585.005585234985478930020220000000
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................2115330.0053302552317400000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................2213904.00390433373313170000000000000
...........................................................................................................TTCGAGACCACTCTAATCC............................................................1913727.0037272034782789102920000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................2312638.002638724251275917100110000000
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2012557.002557616781834645126188420000000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................2311435.0014354135566100000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................2311354.00135451124145660052040300000
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................2211170.0011701998110530062000000000
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................2111149.0011493255986812002000000000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................1811000.0010006829971301144000000000
...........................................................................................................TTCGAGACCACTCTAATCCAG..........................................................211750.0075017289120000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................221683.0068316552250000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................211673.0067346479130000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................211598.0059835454370000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................211446.00446238732232000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241445.004450364283900102200000000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................181438.0043833847437300000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241430.00430037435192000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231371.00371030924280025110100000
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................201285.00285012531524001000000000
..........................................................................................................TTTCGAGACCACTCTAATCCAAA.........................................................231224.0022401813940000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAC..........................................................231179.0017911661200000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................241173.001730167420000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................221172.00172010105118020000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................251130.001301118830000000000000
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201122.001221501691000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................251104.00104091750000010000000
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21195.0095184180000010000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAA..........................................................23193.00930791040000000000000
............................................................................................................TCGAGACCACTCTAATCC............................................................18191.0091080182000000000000
...........................................................................................................TTCGAGACCACTCTAATCCAAA.........................................................22185.00850661720000000000000
..........................................................................................................TTTCGAGACCACTCTAATT.............................................................19171.0071269000000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATAA........................................................24171.0071062610000200000000
..........................................................................................................TTTCGAGACCACTCTAATCT............................................................20170.0070069010000000000000
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................20167.0067065110000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................24161.0061057310000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................21160.0060051630000000000000
..............................................................................................................GAGACCACTCTAATCCATT.........................................................19153.00531343113100000000000
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19149.00490290200000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23146.0046042040000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCGG..........................................................22146.0046045100000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATAA........................................................23144.0044039320000000000000
.........................................................................................................GTTTCGAGACCACTCTAATC.............................................................20144.0044040040000000000000
...........................................................................................................TTCGAGACCACTCTAATCCG...........................................................20143.0043043000000000000000
.........................................................................................................GTTTCGAGACCACTCTAATCCT...........................................................22141.0041040100000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................24141.00410151193020100000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................24141.0041031450000010000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAG..........................................................23140.0040038200000000000000
............................................................................................................TCGAGACCACTCTAATCCA...........................................................19129.00290120152000000000000
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18126.0026018062000000000000
..........................................................................................................TTTCGAGACCACTCTAATCCACC.........................................................23125.0025022210000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................23124.0024060142020000000000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18123.0023013360100000000000
..........................................................................................................TTTCGAGACCACTCTAAA..............................................................18122.0022021010000000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTAT.......................................................24121.0021019200000000000000
droSec2
A-----------A-ATGCAGTTTGCC-CGGA--------------GACGCCGGTT---------------GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAATTCA---TCTCGATTTTCTT-------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231134387.00134387120524980421911868
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................22180121.008012172420543610971168
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................22173522.0073522671314865689837
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21113117.00131171236663020101
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21111968.001196810381131741229
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................2115448.00544854132744
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................2013918.003918379279542
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................2411700.001700159190316
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2011472.001472142531016
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2311132.001132107050111
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................201819.008198081001
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201383.00383377402
...........................................................................................................TTCGAGACCACTCTAATCC............................................................191368.00368365201
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................221322.003222981455
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231311.0031126527136
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221288.002882551779
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................231238.00238235210
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241162.00162149715
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231154.00154140842
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................191150.001501213323
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................241124.00124119113
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191121.00121118201
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241115.00115112210
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................221112.00112110002
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................23198.009895021
............................................................................................................TCGAGACCACTCTAATCCA...........................................................19179.007978100
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................22176.007676000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................23174.0074541631
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19171.007171000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................23166.006664200
...........................................................................................................TTCGAGACCACTCTAATCCAG..........................................................21164.006464000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................21152.005249201
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................21143.004343000
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................22142.004237410
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21141.004140100
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................22138.003829441
............................................................................................................TCGAGACCACTCTAATCCATG.........................................................21132.003232000
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18126.002624200
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21122.002222000
............................................................................................................TCGAGACCACTCTAATCC............................................................18120.002020000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................22119.001919000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................18119.001918100
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................25118.001817100
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................22117.001716100
...............................................................................................................AGACCACTCTAATCCATT.........................................................18117.001716010
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................24117.001717000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18115.001514100
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................21114.001413100
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................24114.001414000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23114.001414000
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18112.001212000
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................20110.00108200
droYak3
A-----------A-ATGCAGTTTGCC-CGGA--------------GGAGCCGGTT---------------TACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAATT-------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231246950.0024695086427151092352420110929852941004
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................221138076.001380763475497735143713479200372300014
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................221101495.0010149547011498201657425112927850000
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21119020.00190205422129305638265750000
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21118194.001819419581578144413333610000
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................20112971.001297171325753250714400000
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................2117910.0079106477986101400000
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................2415833.005833319024834420101040000
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................2215753.00575353154638900120000
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2313139.0031391414162419123760000
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2012563.00256312524140021210000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................2311566.00156611234738910150000
...........................................................................................................TTCGAGACCACTCTAATCC............................................................1911198.001198584613000010000
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................2211035.0010353576175010190000
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................201974.00974289271000180000
...........................................................................................................TTCGAGACCACTCTAATCCAC..........................................................211673.006736632800000000
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................221672.006724307116700040000
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................191640.00640475146307720000
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................221533.00533363165100040000
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201524.0052414504001050000
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221426.00426493509410130000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................241415.004153406200040000
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................221347.003475339200010000
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231347.00347772421412290000
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241330.00330642455000160000
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................231303.00303101193900000000
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................221289.0028938250000010000
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................211250.00250104136800020000
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................231241.002410235400020000
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231230.0023039178210280000
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241180.0018019158300000000
............................................................................................................TCGAGACCACTCTAATCCA...........................................................191176.001763173000000000
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191169.001694162110010000
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................221154.001542152000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................231129.001298834600100000
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................211119.001192197100000000
...........................................................................................................TTCGAGACCACTCTAATC.............................................................181117.001179817000110000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................181104.001049410000000000
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................21186.0086976100000000
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................19170.0070268000000000
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................24169.00694819100010000
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................25168.00684025100020000
............................................................................................................TCGAGACCACTCTAATCC............................................................18168.00682543000000000
..............ATGCAGTTTGCC-CGGA--------------GGAGCC.......................................................................................................................................22155.00551112000410000
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................21154.0054459000000000
............A-ATGCAGTTTGCC-CGGA--------------GGAGCC.......................................................................................................................................23153.00533140000360000
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................24153.00531933000100000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18150.0050149000000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................25142.00422912000010000
...........................................................................................................TTCGAGACCACTCTAATCCAG..........................................................21139.0039336000000000
..........................................................................................................TTTCGAGACCACTCTAATCCAAA.........................................................23137.00372114200000000
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18136.0036727100010000
............A-ATGCAGTTTGCC-CGGA--------------GGAGC........................................................................................................................................22134.0034080010250000
..........................................................................................................TTTCGAGACCACTCTAATCCCC..........................................................22132.0032310100000000
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23131.0031821200000000
..............ATGCAGTTTGCC-CGGA--------------GGAGC........................................................................................................................................21126.0026030001220000
...........................................................................................................TTCGAGACCACTCTAATCCATTAA.......................................................24123.0023913000010000
..........................................................................................................TTTCGAGACCACTCTAATCA............................................................20123.0023517000100000
..........................................................................................................TTTCGAGACCACTCTAATCCC...........................................................21122.0022145200100000
..........................................................................................................TTTCGAGACCACTCTAATCCATTGG.......................................................25120.0020020000000000
.............................................................................................CTCAAGTGTGTAGTTTCGAGACCACT...................................................................26119.0019030011140000
............................................................................................ACTCAAGTGTGTAGTTTCGAGACCACT...................................................................27119.0019040001140000
..........................................................................................................TTTCGAGACCACTCTAATCCTC..........................................................22119.0019133300000000
............................................................................................................TCGAGACCACTCTAATCCATTG........................................................22119.0019019000000000
.............................................................................................................CGAGACCACTCTAATCCA...........................................................18117.0017017000000000
...........................................................................................................TTCGAGACCACTCTAATCCT...........................................................20115.0015015000000000
...............TGCAGTTTGCC-CGGA--------------GGAGCC.......................................................................................................................................21114.001405000090000
.........................................................................................................GTTTCGAGACCACTCTAATCCT...........................................................22114.001449100000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAA..........................................................23114.001439200000000
..........................................................................................................TTTCGAGACCACTCTAATCCTA..........................................................22114.001459000000000
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21114.0014014000000000
A-----------A-ATGCAGTTTGCC-CGGA--------------GGAGCC.......................................................................................................................................24114.0014040000100000
............A-ATGCAGTTTGCC-CGGA--------------GGA..........................................................................................................................................20113.0013030000100000
......................................................................................................GTAGTTTCGAGACCACTCTAATCCATT.........................................................27113.001385000000000
.............................................................................................................CGAGACCACTCTAATCCATTT........................................................21112.0012012000000000
................................................................................................AAGTGTGTAGTTTCGAGAC.......................................................................19112.001244000040000
...........................................................................................................TTCGAGACCACTCTAATCCAAA.........................................................22112.001247100000000
.........................................................................................................GTTTCGAGACCACTCTAATCCAC..........................................................23111.0011100100000000
.................CAGTTTGCC-CGGA--------------GGAGCC.......................................................................................................................................19111.0011010000010000
................GCAGTTTGCC-CGGA--------------GGAGCC.......................................................................................................................................20111.001104200050000
droEre2
A-----------A-ATGCAGTTTGCC-CGGA--------------GATGCCGGTT---------------TCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAATTCA---TCTGGATTTT----------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................TTTCGAGACCACTCTAATCCATT.........................................................231287167.002871672726662804131109962371224
...........................................................................................................TTCGAGACCACTCTAATCCATT.........................................................221179931.00179931164237125233561294223380
..........................................................................................................TTTCGAGACCACTCTAATCCAT..........................................................221119246.00119246114899951427286912340
...........................................................................................................TTCGAGACCACTCTAATCCAT..........................................................21126320.002632024899616312291670
..........................................................................................................TTTCGAGACCACTCTAATCCA...........................................................21121434.00214342048642537012150
............................................................................................................TCGAGACCACTCTAATCCATT.........................................................21112141.00121411209810122190
..........................................................................................................TTTCGAGACCACTCTAATCC............................................................2017126.00712669052140144565
..........................................................................................................TTTCGAGACCACTCTAATCCATTT........................................................2415200.0052005036261113339
...........................................................................................................TTCGAGACCACTCTAATCCATTT........................................................2313778.0037783564140185240
...........................................................................................................TTCGAGACCACTCTAATCCA...........................................................2012864.0028642751010101110
............................................................................................................TCGAGACCACTCTAATCCAT..........................................................2011679.0016791667120360
..........................................................................................................TTTCGAGACCACTCTAATCCAA..........................................................221852.00852835110960
...........................................................................................................TTCGAGACCACTCTAATCC............................................................191752.00752739000850
.............................................................................................................CGAGACCACTCTAATCCATT.........................................................201704.007046840001550
..........................................................................................................TTTCGAGACCACTCTAATCCATA.........................................................231554.0055448502020470
..........................................................................................................TTTCGAGACCACTCTAATCCATTA........................................................241406.004063850011460
...........................................................................................................TTCGAGACCACTCTAATCCATA.........................................................221398.003983600102980
..........................................................................................................TTTCGAGACCACTCTAATC.............................................................191362.0036229513115470
.........................................................................................................GTTTCGAGACCACTCTAATCCAT..........................................................231288.00288287000010
.........................................................................................................GTTTCGAGACCACTCTAATCCATT.........................................................241286.00286286000000
..........................................................................................................TTTCGAGACCACTCTAATCCATTG........................................................241273.00273271100010
...........................................................................................................TTCGAGACCACTCTAATCCATTA........................................................231272.002722410002470
............................................................................................................TCGAGACCACTCTAATCCATTT........................................................221270.00270270000000
..........................................................................................................TTTCGAGACCACTCTAATCCATC.........................................................231255.0025516732004520
...........................................................................................................TTCGAGACCACTCTAATCCAG..........................................................211164.00164164000000
..............................................................................................................GAGACCACTCTAATCCATT.........................................................191159.001591430101050
............................................................................................................TCGAGACCACTCTAATCCA...........................................................191156.00156155000010
.........................................................................................................GTTTCGAGACCACTCTAATCCA...........................................................221152.00152150100010
...........................................................................................................TTCGAGACCACTCTAATCCATTG........................................................231140.00140135000320
..........................................................................................................TTTCGAGACCACTCTAATCCATG.........................................................231136.001361150111180
.............................................................................................................CGAGACCACTCTAATCCAT..........................................................191130.00130127000120
..........................................................................................................TTTCGAGACCACTCTAATCCT...........................................................211119.00119116000210
..........................................................................................................TTTCGAGACCACTCTAATCCATTC........................................................241104.00104100100210
..........................................................................................................TTTCGAGACCACTCTAATCCAC..........................................................221103.00103802100200
...........................................................................................................TTCGAGACCACTCTAATCCAA..........................................................211102.00102101000100
...........................................................................................................TTCGAGACCACTCTAATCCATC.........................................................22196.0096718101600
..........................................................................................................TTTCGAGACCACTCTAATCCG...........................................................21178.007878000000
............................................................................................................TCGAGACCACTCTAATCCATG.........................................................21174.007474000000
...........................................................................................................TTCGAGACCACTCTAATCCATTTT.......................................................24169.006959000910
...........................................................................................................TTCGAGACCACTCTAATCCATTC........................................................23168.006863100400
.........................................................................................................GTTTCGAGACCACTCTAATCC............................................................21153.005352100000
..........................................................................................................TTTCGAGACCACTCTAAT..............................................................18147.004740000160
...........................................................................................................TTCGAGACCACTCTAATC.............................................................18145.004543000200
..........................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................................................25143.004342000100
..........................................................................................................TTTCGAGACCACTCTAATCCAG..........................................................22141.004137000400
............................................................................................................TCGAGACCACTCTAATCC............................................................18139.003939000000
......................................................................................................GTAGTTTCGAGACCACTCTAATCCATT.........................................................27139.003935000220
...........................................................................................................TTCGAGACCACTCTAATCCATG.........................................................22138.003837000100
..............ATGCAGTTTGCC-CGGA--------------GATGCC.......................................................................................................................................22128.002820102230
..................................................................................................................CCACTCTAATCCATTGCAGCAT..................................................22127.0027150001020
..............................................................................................................GAGACCACTCTAATCCAT..........................................................18124.002422000110
............A-ATGCAGTTTGCC-CGGA--------------GATGCC.......................................................................................................................................23123.002320201540
..........................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................................................25122.002218000400
............................................................................................................TCGAGACCACTCTAATCCATTA........................................................22122.002222000000
...............................................................................................................AGACCACTCTAATCCATT.........................................................18121.002119100010
............A-ATGCAGTTTGCC-CGGA--------------GATGCCGGT....................................................................................................................................26120.002000001730
............................................................................................................TCGAGACCACTCTAATCCATA.........................................................21120.002020000000
.....................................................................................................TGTAGTTTCGAGACCACTCTAATCCATT.........................................................28120.002016010120

Generated: 10/20/2015 at 07:40 PM