ID:

dwi-mir-iab-4

 Coordinate:

scf2_1100000004943:4905600-4905667 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.0 -29.0 -28.8

Flybase annnotation

pre_miRNA [Dwil\mir-iab-4-RM]; Antisense to utr3 [utr3_minus_7917]; miRNA [Dwil\miR-iab-4-3p-RB]; miRNA [Dwil\miR-iab-4-5p-RA]

No Repeatable elements found

Sense Strand Reads

ACGAAACGGTCACCGGGTACCGGTCACTTTCCAGATGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAACGCGGGATGTGTGAAACACTTTTTATTCTTTTGTGT

*****************************************.(((.....((((.(((((((((((((.((((((.((..........)).)).)))).)))))))))))))..)))).....)))....************************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V118

embryo

 M020

head

 V119

head

 V117

male body
........................................................ACGTATACTGAATGTATCCTGA.......................................................................................... 22 0 1 693.00 693 358 333 1 1 0
........................................................ACGTATACTGAATGTATCCTG........................................................................................... 21 0 1 361.00 361 312 47 2 0 0
.........................................................CGTATACTGAATGTATCCTGA.......................................................................................... 21 0 1 42.00 42 36 5 0 0 1
........................................................ACGTATACTGAATGTATCCT............................................................................................ 20 0 1 35.00 35 20 14 0 1 0
.........................................................CGTATACTGAATGTATCCTG........................................................................................... 20 0 1 26.00 26 26 0 0 0 0
.............................................................................................TATACCTTCAGTATACGTAACA..................................................... 22 0 1 18.00 18 3 15 0 0 0
........................................................ACGTATACTGAATGTATCCTGT.......................................................................................... 22 1 1 9.00 9 4 5 0 0 0
..........................................................................................CGGTATACCTTCAGTATACGT......................................................... 21 0 1 6.00 6 0 6 0 0 0
..........................................................GTATACTGAATGTATCCTGA.......................................................................................... 20 0 1 4.00 4 2 1 1 0 0
..........................................................................................CGGTATACCTTCAGTATACGTA........................................................ 22 0 1 3.00 3 2 1 0 0 0
........................................................ACGTATACTGAATGTATCCTGAG......................................................................................... 23 0 1 3.00 3 1 2 0 0 0
.............................................................................................TATACCTTCAGTATACGTAACT..................................................... 22 1 1 3.00 3 0 3 0 0 0
........................................................ACGTATACTGAATTTATCCTGA.......................................................................................... 22 1 1 3.00 3 1 1 1 0 0
........................................................ACGTATACTGAATGTATCCTGG.......................................................................................... 22 1 1 3.00 3 3 0 0 0 0
.......................................................TACGTATACTGAATGTATCCT............................................................................................ 21 0 1 2.00 2 0 2 0 0 0
.........................................................CGTATACTGAATGTATCCTGAA......................................................................................... 22 1 1 2.00 2 1 1 0 0 0
.........................................................CGTATACTGAATGTATCCT............................................................................................ 19 0 1 2.00 2 2 0 0 0 0
........................................................ACGTATACTGAACGTATCCTGA.......................................................................................... 22 1 1 2.00 2 0 2 0 0 0
.............................................................................................TATACCTTCAGTATACGTAAC...................................................... 21 0 1 2.00 2 0 2 0 0 0
........................................................ACTTATACTGAATGTATCCTGA.......................................................................................... 22 1 1 2.00 2 2 0 0 0 0
........................................................ACGTATACTGACTGTATCCTGA.......................................................................................... 22 1 1 2.00 2 0 2 0 0 0
..........................................................................................CGGTATACCTTCAGTATACG.......................................................... 20 0 1 2.00 2 1 1 0 0 0
........................................................ACGTATACTGAATGTATCCTGAGT........................................................................................ 24 0 1 2.00 2 1 1 0 0 0
..........................................................................................CGGTATACCTTCAGTATACGTAA....................................................... 23 0 1 2.00 2 0 2 0 0 0
...........................................................TATACTGAATGTATCCTGAGTG....................................................................................... 22 0 1 2.00 2 0 2 0 0 0
........................................................ACGTATACTGAGTGTATCCTGA.......................................................................................... 22 1 1 2.00 2 1 1 0 0 0
........................................................ACGTATACTGAATGTATCCTGAGTGT...................................................................................... 26 0 1 2.00 2 0 2 0 0 0
........................................................ACGTATACTGAATGTATCC............................................................................................. 19 0 1 2.00 2 1 1 0 0 0
........................................................ACGTATACTGAATCTATCCTGA.......................................................................................... 22 1 1 2.00 2 0 1 1 0 0
.........................................................CGTATACTGAATGTATCCTGATT........................................................................................ 23 1 1 2.00 2 1 1 0 0 0
.........................................................CGTATACTGAATGTATCCTGACT........................................................................................ 23 1 1 2.00 2 0 0 2 0 0
........................................................ACGTGTACTGAATGTATCCTGA.......................................................................................... 22 1 1 2.00 2 0 2 0 0 0
........................................................ACGTATACTGAATTTATCCT............................................................................................ 20 1 1 2.00 2 0 0 2 0 0
........................................................ACGTATACTGAATGTATCCTGATT........................................................................................ 24 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAATGTATACTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTCAATGTATCCTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................GCGTATACTGAATGTATCCTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATAATGAATGTATCCTG........................................................................................... 21 1 1 1.00 1 0 1 0 0 0
..................................................TCGACGACGTATACTGAATGTATCCTGA.......................................................................................... 28 3 1 1.00 1 1 0 0 0 0
.......................................................TACGTATACTGGATGTATCCTG........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..........................................................GTATACTGAATGTATCCTGATA........................................................................................ 22 2 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTGAATGTATCCTGAA......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................CGTATACTGAATGTATCCTGAT......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTAAATGTATCCTG........................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................TACGTATATTGAATGTATCCTG........................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.......................................................AACGTATACTGAATGTATCCTG........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
........................................................ACGGATACTGAATGTATCCTG........................................................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTGAATGTATC.............................................................................................. 18 0 1 1.00 1 0 1 0 0 0
.......................................................CACGTATACTGAATGTATCCTGA.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0
.....................................................TATACGTATACTGAATGTATCC............................................................................................. 22 0 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAATGTATCTTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAATGTATCCTTA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..............................................................................................ATACCTTCAGTATACGTAAC...................................................... 20 0 1 1.00 1 1 0 0 0 0
...........................................................TATACTGAATGTATCCTG........................................................................................... 18 0 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTGAATGTGTCCTGA.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTGAATGTATCCTGAGTG....................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.......................................................TACGTATACTGAATGTATC.............................................................................................. 19 0 1 1.00 1 0 1 0 0 0
.............................................................................................TATACCTTCAGTATAAGTAA....................................................... 20 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAATGCATCCTGA.......................................................................................... 22 1 1 1.00 1 0 0 0 1 0
.....................................................ATCACGTATACTGAATGTATCCTG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTGAATGTATCGTG........................................................................................... 21 1 1 1.00 1 0 1 0 0 0
........................................................ACGCATACTGAATGTATCCT............................................................................................ 20 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAATGTATCCTGACT........................................................................................ 24 1 1 1.00 1 1 0 0 0 0
........................................................ACGTATACCGAATGTATCCTG........................................................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................ACGTATACTGAATGTATCCTC........................................................................................... 21 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGACTGTATCCTG........................................................................................... 21 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTTAATGTATCCTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAATGTATCCTT........................................................................................... 21 1 1 1.00 1 0 1 0 0 0
........................................................ACGCATACTGAATGTATCCTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.........................................................ACTATACTGAATGTATCCTGA.......................................................................................... 21 2 1 1.00 1 0 1 0 0 0
........................................................ACGTATACTGAGTGTATCCT............................................................................................ 20 1 1 1.00 1 1 0 0 0 0
........................................................ACCTATACTGAATGTATCCTGA.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...........................................................TATACTGAATGTATCCTGAAA........................................................................................ 21 2 1 1.00 1 1 0 0 0 0
................................AGATGAATCTGTGCAACTTCGT.................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0
.............................................................................................TATACCTTCAGTATACGTAA....................................................... 20 0 1 1.00 1 0 1 0 0 0
.........................................................CGTATACTGAATGTATCC............................................................................................. 18 0 1 1.00 1 1 0 0 0 0
........................................................ACATATACTGAATGTATCCTGA.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..........................................................................................CGGTATACCTTCAGTATACGTAAC...................................................... 24 0 1 1.00 1 1 0 0 0 0
.........................................................CGTATACTGAAAGTATCCTGA.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.........................................................ACTACACTGAATGTATCCTGA.......................................................................................... 21 3 2 0.50 1 0 1 0 0 0
........................................................ACGTATACTGAAATTATCCT............................................................................................ 20 2 4 0.25 1 0 0 1 0 0
..........................................................ACGTACTGAATGTATCCTGA.......................................................................................... 20 3 7 0.14 1 0 1 0 0 0
.CGAAACGGTGACTGCGTAC.................................................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0
...........................................................................................................................CACCAACAACGCCAGATG........................... 18 2 15 0.07 1 0 1 0 0 0
..........................................................ACGTACTGAATGTATCCTG........................................................................................... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGCTTTGCCAGTGGCCCATGGCCAGTGAAAGGTCTACTTAGACACGTTGAAGCATATGCATATGACTTACATAGGACTCACATACGATAGGCCATATGGAAGTCATATGCATTGTGCTACTTTGTGGTTGTTGCGCCCTACACACTTTGTGAAAAATAAGAAAACACA

**************************************.(((.....((((.(((((((((((((.((((((.((..........)).)).)))).)))))))))))))..)))).....)))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V118

embryo

 V117

male body		 V119

head

 M020

head
..............................................................................................TATGGAAGTCATATGCATT....................................................... 19 0 1 236.00 236 128 23 67 17 1
............................................................................................CATATGGAAGTCATATGCATT....................................................... 21 0 1 224.00 224 177 43 1 2 1
.............................................................................................ATATGGAAGTCATATGCATT....................................................... 20 0 1 135.00 135 77 44 6 8 0
.........................................................................................GGCCATATGGAAGTCATATGCATT....................................................... 24 0 1 87.00 87 58 29 0 0 0
...........................................................................................CCATATGGAAGTCATATGCATT....................................................... 22 0 1 66.00 66 41 22 1 2 0
..........................................................................................GCCATATGGAAGTCATATGCATT....................................................... 23 0 1 24.00 24 17 7 0 0 0
.......................................................ATGCATATGACTTACATAGGA............................................................................................ 21 0 1 16.00 16 4 10 0 2 0
........................................................................................AGGCCATATGGAAGTCATATGCATT....................................................... 25 0 1 14.00 14 4 9 1 0 0
........................................................................................AGGCCATATGGAAGTCATATGC.......................................................... 22 0 1 13.00 13 1 11 0 0 1
..............................................................................................TATGGAAGTCATATGCAT........................................................ 18 0 1 13.00 13 13 0 0 0 0
............................................................................................CATATGGAAGTCATATGCAT........................................................ 20 0 1 11.00 11 11 0 0 0 0
.................................................................................................................GTGCTACTTTGTGGTTGTT.................................... 19 0 1 10.00 10 0 10 0 0 0
........................................................TGCATATGACTTACATAGGA............................................................................................ 20 0 1 9.00 9 4 2 3 0 0
.............................................................................................ATATGGAAGTCATATGCAT........................................................ 19 0 1 9.00 9 9 0 0 0 0
.........................................................................................GGCCATATGGAAGTCATATGCAT........................................................ 23 0 1 9.00 9 9 0 0 0 0
......................................................TATGCATATGACTTACATAGGA............................................................................................ 22 0 1 6.00 6 4 2 0 0 0
........................................................................................TGGCCATATGGAAGTCATATGCATT....................................................... 25 1 1 4.00 4 1 3 0 0 0
.....................................................ATATGCATATGACTTACATAGGA............................................................................................ 23 0 1 3.00 3 1 2 0 0 0
.............................................................................................ATATGGAAGTCATATGCATTC...................................................... 21 1 1 2.00 2 2 0 0 0 0
...........................................................................................CCATATGGAAGTCATATGCAT........................................................ 21 0 1 2.00 2 2 0 0 0 0
...........................................................................................ACATATGGAAGTCATATGCATT....................................................... 22 1 1 2.00 2 2 0 0 0 0
............................................................................................CATAAGGAAGTCATATGCATT....................................................... 21 1 1 2.00 2 2 0 0 0 0
......................................................TATGCATATGACTTACATAGG............................................................................................. 21 0 1 2.00 2 2 0 0 0 0
.........................................................................................TGCCATATGGAAGTCATATGCATT....................................................... 24 1 1 2.00 2 1 1 0 0 0
............................................................................................CATATGGAAGTCATATGCATTG...................................................... 22 0 1 2.00 2 2 0 0 0 0
.................................................................................................................GTGCTACTTTGTGGTTGTTGC.................................. 21 0 1 2.00 2 0 2 0 0 0
.............................................................................................TTATGGAAGTCATATGCATT....................................................... 20 1 1 2.00 2 2 0 0 0 0
..............................................................................................TATGGAAGTCATATGCATTGT..................................................... 21 0 1 1.00 1 0 0 1 0 0
...............................................................................................ATGGAAGTCATATGCATT....................................................... 18 0 1 1.00 1 0 1 0 0 0
........................................................................................TGGCCATATGGAAGTCATATGCAT........................................................ 24 1 1 1.00 1 1 0 0 0 0
............................................................................................AATATGGAAGTCATATGCATT....................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................................................................................GTGCTACTTTGTGGTTGTTGCGCCCTA............................ 27 0 1 1.00 1 0 1 0 0 0
............................................................................................CATATGGAAGTCATATGCA......................................................... 19 0 1 1.00 1 1 0 0 0 0
............................................................................................CATATGGAAGTCATATGCACT....................................................... 21 1 1 1.00 1 0 1 0 0 0
.........................................................................................GGCCATATGGAAGTCATATGCATTT...................................................... 25 1 1 1.00 1 1 0 0 0 0
..........................................................................................GCCATATGGAAGTCATATGCAT........................................................ 22 0 1 1.00 1 1 0 0 0 0
.....................................................ATTTGCATATGACTTACATAGG............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................ATATGGAAGTCATATTCATT....................................................... 20 1 1 1.00 1 0 0 1 0 0
...........................................................................................CCATATGGAAGTCATAAGCATT....................................................... 22 1 1 1.00 1 0 1 0 0 0
...........................................................................................GCATATGGAAGTCATATGCATT....................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................GGCCATATGGAATTCATATGCATT....................................................... 24 1 1 1.00 1 1 0 0 0 0
........................................................................................AGGCCATATGGGAGTCATATGCA......................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................GGCCATATGGAAGTCATATGCACT....................................................... 24 1 1 1.00 1 0 1 0 0 0
.............................................................................................ATACGGAAGTCATATGCATT....................................................... 20 1 1 1.00 1 0 0 0 1 0
.......................................................................................ATGGCCATATGGAAGTCATATGCATT....................................................... 26 2 1 1.00 1 1 0 0 0 0
............................................................................................CATATGGAAGTCATATGAAT........................................................ 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCATATGCATTGTGCGAA................................................ 18 2 1 1.00 1 1 0 0 0 0
.............................................................................................ATATGGAAGTCATATGCGTT....................................................... 20 1 1 1.00 1 0 0 0 1 0
...................................................GCATATGCATATGACTTACATA............................................................................................... 22 0 1 1.00 1 0 1 0 0 0
..............................................................................................TATGGAAGTCGTATGCATT....................................................... 19 1 1 1.00 1 0 0 0 1 0
.........................................................................................GGCCATATGGAAATCATATGCATT....................................................... 24 1 1 1.00 1 1 0 0 0 0
............................................................................................CATATGGAAGTCATATGCATTTG..................................................... 23 2 1 1.00 1 1 0 0 0 0
..............................................................................................TAGGGAAGTCATATGCATT....................................................... 19 1 1 1.00 1 1 0 0 0 0
.............................................................................................ATATGGAAGTCATATGCA......................................................... 18 0 1 1.00 1 1 0 0 0 0
..............................................................................................TATGGAAGTCATAAGCAT........................................................ 18 1 1 1.00 1 1 0 0 0 0
...........................................................................................ACATATGGAAGTCATATGCAT........................................................ 21 1 1 1.00 1 1 0 0 0 0
............................................................................................CATAGGGAAGTCATATGCATT....................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................AGGCCATATGGAACTCATATGCATT....................................................... 25 1 1 1.00 1 0 1 0 0 0
.......................................................CTGCATATGACTTACATAGGA............................................................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................AATATGCATATGACTTACATAGGA............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................TAATTAGACACGTTGAAGC................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
.........................................................................................GGCCATATGGAAGTCATACGCATT....................................................... 24 1 1 1.00 1 1 0 0 0 0
..............................................................TGACTTACATAGGACTCA........................................................................................ 18 0 1 1.00 1 0 0 1 0 0
...........................................................................................CCATATGGAAGTCATATGCATTCA..................................................... 24 2 1 1.00 1 1 0 0 0 0
........................................................................................AGGCCATATGGAAGTCATATGCAT........................................................ 24 0 1 1.00 1 1 0 0 0 0
............................................................................................CATATGGAAGTCATATGAATT....................................................... 21 1 1 1.00 1 0 1 0 0 0
.................................................................................................................GTGCTACTTTGTGGTTGTTGCGCCC.............................. 25 0 1 1.00 1 0 0 1 0 0
.............................................................................................ATATGGAACTCATATGCATT....................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TATGGAGGTCATATGCATT....................................................... 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................TATGGAACTCATATGCATT....................................................... 19 1 4 0.25 1 0 1 0 0 0
...........................................................................................................................GCGGTTTGTGCGCCCTACA.......................... 19 3 6 0.17 1 0 0 1 0 0
.....................................................................................................CTCATATGCATTGTGCGAA................................................ 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004943:4905550-4905717 - dwi-mir-iab-4 Known_mirbase ACGAAACGGT-----CA---------CC----GGGT-AC-------------C------------GG---T-CA-CTTTC----------------C-------AGATGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAACGCGGGATGTGTGAAACACTTTT----TA---------------------------------TTCTTTTGTGT
droVir3 scaffold_12855:414671-414817 - dvi-mir-iab-4 Known_mirbase TGAGGT----------GTTTATA---GC---GGA------------------------------------G-CA-CTT----------------------A--TTGTAGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGACGCGGGATGTG--TGATATATTT--------------------------------------------------
droMoj3 scaffold_6540:1943687-1943841 + dmo-mir-iab-4 Known_mirbase AGACG---GC-----GA---------TT-------C-GAGATTTTACACTTTT------------CAGGAG--------C----------------GAAT----TGTTGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGTGAAA---------------------------------------------------------
droGri2 scaffold_14906:12815057-12815212 + dgr-mir-iab-4 Known_mirbase GTTACA------CTGTGTTTACA---CC---GGGGG-GA---------------------------------CA-CT--C--CAAAGGACACTCTTGTA---------GAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTG--T-----------------------------------------------------------
dp5 2:17671712-17671865 + dps-mir-iab-4 Known_mirbase TCG--A------CTGCA---------CT-------C-GTAATTTT----CTTT------------CA---G-CG-GTTAT----------------GTA-----GGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATACGTCGAAC--------------------------------------------------------
droPer2 scaffold_0:11526528-11526671 + dpe-mir-iab-4 Known_mirbase TCG-----------------------------------TAATTTT----CTTT------------CA---G-CG-GTTAT----------------GTA-----GGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATATGTCGAAC--------------------------------------------------------
droAna3 scaffold_13340:7215156-7215307 - dan-mir-iab-4 Known_mirbase ACT---------------------------------------------------------------A---G-AACATTAC----------------GGAGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAACGCGGGACGTG--AAA-ACTTAA----TA---------------------------------TTCTGAAATAT
droBip1 scf7180000396708:1638822-1638988 + CTTTAA------TTGCA---------GC---ACTACTATCTTA--------CC------------AG---A-AA-ATTAC----------------GATGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACTTTCAACGCGGGACGTG--AAA-ACTTTGTT--TT--------------------------------------------
droKik1 scf7180000302313:151124-151313 + CTGCAA------CTGCA---------GT---C-------CTTT--------TTCGTGTCCTTTATAA---G-CA-CTTGC----------------GGATG--ATGATGACTCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACAAGCAACGCGGGATGTG--AAACACTTGA----AAAA---------A-----ATATATGACAT-----------TGTGA
droFic1 scf7180000452523:122315-122484 + ACG-AA------CTGCA---------GC---GACAC-GTC--T--------TT------------CA---GTCA-CTTTCGCC-------------GGATTTCATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTTTCC--TT--------------------------------------------
droEle1 scf7180000486474:1729401-1729554 + CTGCATCTGCAACTGCA-----------------------------------T------------CG---T-CA-CTTTC----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTT---------------------------------------------------
droRho1 scf7180000759657:23945-24136 + CTGCAA------CTGCA---------GC---GACGC-ATCCTG--------TT------------TG---G-CA-CTTTC----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTTACTGTTAAAACTGTTGAATACGGAACACA---------------------T
droBia1 scf7180000299102:622733-622915 + CTGGAT------CTGCA---------GC---GGCGC-ATCTTT--------CT------------CG---G-CA-CTTTT----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTTATTTTTGAA---------A-----ACACG-----T-----------TGTGA
droTak1 scf7180000411269:86531-86700 + CTGGAA------CTGCA---------GC---GGCGC-ATCCTT--------CT-----------TTG---G-CA-CTTTT----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACACTTTTCTTTTT--------------------------------------------
droEug1 scf7180000409804:92868-93060 + CTGGAA------CTGCA------------------C-TTCATT--------TT------------GG---T-CA-CTTTC----------------GGATT--ATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACAGTTTACTTTAAAA---------A-----CCACAAAACACTTTCATTATTTCTCAC
dm3 chr3R:12681937-12682101 + dme-mir-iab-4 Known_mirbase TTGGAT------CCGCG---------AC---GACGC-ATAATT--------TT------------CA---G-CA-CTTTT----------------GAATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAACGTGGGATGTG--AAACACTTTT----TA--------------------------------------------
droSim2 3r:8574071-8574254 - dsi-mir-iab-4 Known_mirbase CTTTAT------CTGCATCTAGATCCGCGACACGGC-ATAATT--------TT------------CA---G-CA-CTTTT----------------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG--AAACACTTTT----AA-----------T-----ACACT---------------------T
droSec2 scaffold_12:1472208-1472384 - dse-mir-iab-4 Known_mirbase CTTTAT------CTGCATCTAGATCCGCGACACGGC-ATAATT--------TT------------CA---G-CA-CTTTT----------------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG--AAACACTTTT----TA--------------------------------------------
droYak3 3R:11708893-11709099 - dya-mir-iab-4 Known_mirbase ACAT--------------CTCGATCCGCGACGACGC-GTAATT--------TT------------CA---G-CA-CTTTT----------------GGACT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG--AAACACTTTT----TAATACTGCTTAAT-----ACACGTAGCACTGT-GTTATTTGGTAT
droEre2 scaffold_4770:8952380-8952544 - der-mir-iab-4 Known_mirbase CTGGAT------CCGCG---------AC---GACGT-ATAATT--------TT------------CA---G-CA-CTTTT----------------GGATT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG--AAACACTTTT----TA--------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACGAAACGGT-----CA---------CC----GGGT-AC-------------C------------GG---T-CA-CTTTC----------------C-------AGATGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAACGCGGGATGTGTGAAACACTTTT----TA---------------------------------TTCTTTTGTGTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................221693.00693135803331
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211361.0036123120470
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21142.0042036150
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20135.00350200141
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20126.0026026000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................22118.0018030150
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2219.00904050
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2116.00600060
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2014.00412010
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2213.00302010
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2313.00301020
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2213.00300030
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2213.00303000
...............................................................................................................................TACGTATACTGAATGTATCCT.................................................................................................................................2112.00200020
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................2212.00201010
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1912.00202000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2112.00200020
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2012.00201010
................................................................................................................................ACGTATACTGAATGTATCCTGAGT.............................................................................................................................2412.00201010
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................2312.00200020
...................................................................................................................................TATACTGAATGTATCCTGAGTG............................................................................................................................2212.00200020
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGT...........................................................................................................................2612.00200020
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................1912.00201010
..................................................................................................................................GTATACTGAATGTATCCTGATA.............................................................................................................................2211.00101000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................2311.00101000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2211.00101000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................1811.00100010
.............................................................................................................................TATACGTATACTGAATGTATCC..................................................................................................................................2211.00100010
......................................................................................................................................................................ATACCTTCAGTATACGTAAC...........................................................................................2011.00101000
...................................................................................................................................TATACTGAATGTATCCTG................................................................................................................................1811.00101000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTG............................................................................................................................2511.00100010
...............................................................................................................................TACGTATACTGAATGTATC...................................................................................................................................1911.00100010
................................................................................................................................ACGTATACTGAATGTATCCTC................................................................................................................................2111.00100010
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2111.00100010
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................2111.00101000
........................................................................................................AGATGAATCTGTGCAACTTCGT.......................................................................................................................................................2211.00100010
.....................................................................................................................................................................TATACCTTCAGTATACGTAA............................................................................................2011.00100010
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1811.00101000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................2411.00101000
droVir3
TGAGGT----------GTTTATA---GC---GGA------------------------------------G-CA-CTT----------------------A--TTGTAGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGACGCGGGATGTG--TGATATATTT--------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................2211928.00192811342127026311010003115817920153043115503613663367950411831500063810614132824131393734318000709716412949107341116151662
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211816.008165140314020010000016124161374822195966126165406110104000002021021070001610001200172014010710011
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................201165.00165003320000000000792890188023149572501100041000000000000000000010000400015011200000
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................22186.0086008200100000000002100030003330531900001002000000000000010010000000000000000100000
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21176.007600388000000000000022000101010811400011001000000000010000000000000000000000201011
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................19174.007420543000000000000020200000000000100000000000000001042020100400000000010103000000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20154.005400470000000000000000200100000111000000000000000000000000000000000000001000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................22133.00331034000000000000000000100001100000100000000100003103110000200000100002000113010
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATC...................................................................................................................34124.00240000000000000000000000000000000000000000000332303033000100300000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................21124.00240040000000000001101003600100301000000010000000000000000000000000100000001000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................24122.00220017000000000000020100000000000000152000000100001010000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................20122.002200210000000000000010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................23121.00210015000000000000000000000111101100000000000000000010001000200004000000100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................23118.00180001000000000000000000000010100000000000000000110001011000000010200010202200000
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................21115.00150003000000000000000000000000000000000000000000000001002000100000000102011300000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................18113.00131112000000000000010100001100000100000000000000000000000000100001000010000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................22112.00120050000000000000000000000000000000100000000001000000010100100000200000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................22110.00100014000000000000000000000000100000000000000000000002010000100000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2218.0080013000000000000000000000000000000000000000000000100000000000000300000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..........................................................................................2517.0070001000000000000010000000000000000000000000000001000011000200000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACC..........................................................................................2217.0070005000000000000000000000000000100000000000000000000000000000001000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGTC..............................................................................................................................2316.0060000000000000000000000000000010301000001000000000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2116.0060014000000000000000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2116.0060030000000000000020001000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATCC..................................................................................................................3516.0060000000000000000000000000000000000000000000121000000010000100000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................2216.0060060000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTC................................................................................................................................2115.0050010000000000000000000000000300100000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................2215.0050001000000000000000000000000000000001000000000000010001000000000000010000000000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2014.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2214.0043000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000100000000010101000000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................2314.0040000000000000010000000000010000000000000000000000000001000000001000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGATCT............................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000030000000000
.................................................................................................................................CGTATACTGAATGTATCCTGATA.............................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000300000
.................................................................................................................................CGTATACTGAATGTATCCTGAAA.............................................................................................................................2313.0030000000000000000000000000000100000000000000000000010000000000000000000100000000
.................................................................................................................................CGTATACTGAATGTATCCTGACA.............................................................................................................................2313.0030002000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGACC.............................................................................................................................2413.0030001000000000000000000000000100000000000000000000000000000100000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAA............................................................................................2013.0030000000000000000000000000000000200000001000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGATC.............................................................................................................................2413.0030000000000000000000000000000100100000000000000000000000010000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGATC.............................................................................................................................2313.0030001000000000000000000000010010000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCT......................................................................................................................3113.0030000000000000000000000000000000000000000000000100002000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...........................................................................................2312.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAC.............................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000020000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAA.............................................................................................................................2412.0020010000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATCT..................................................................................................................3511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACG..........................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TACCTTCAGTATACGTAAC...........................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACTGAATGTATCCTGA...............................................................................................................................1611.0010000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................................................................CGTATACTGAATGTATC...................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
..................................................................................................................................GTATACTGAATGTATCCTGAAA.............................................................................................................................2211.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTA.............................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGTT..............................................................................................................................2311.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................ATACCTTCAGTATACGTAAC...........................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAT............................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGT..............................................................................................2011.0010000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAGC.............................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATT...................................................................................................................3411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACT...............................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTT.............................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGATA.............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................GTATACTGAATGTATCCTGAAC.............................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATAC................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTA................................................................................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGATAA............................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACC..........................................................................................2511.0010000000000000000000000000000000000000000000000000000000010000000000000000000000
................................................................................................................................................................TCCGGTATACCTTCAGTATACGTAAC...........................................................................................2611.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGT...............................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................TATACTGAATGTATCC..................................................................................................................................1611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................TATACTGAATGTATCCTGAA..............................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATACTGAATGTATCCTGAAAA............................................................................................................................2230.6720000000000000000000000000000000000000000000000000000000000100000000000000001000
...................................................................................................................................TATACTGAATGTATCCTGTT..............................................................................................................................2020.5010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
AGACG---GC-----GA---------TT-------C-GAGATTTTACACTTTT------------CAGGAG--------C----------------GAAT----TGTTGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGTGAAA---------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................22113359.001335968019701124810
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211937.0093756522003500
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................191784.0078460007780
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................211170.00170671001020
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................241147.0014702001450
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................221137.0013714001320
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................201125.0012540700780
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................221124.0012448001120
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................181108.0010810001070
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................231104.0010420001020
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................21182.00820200800
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................23181.00812300760
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20170.00707000000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................23168.00680000680
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................22167.00670200650
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................22165.00653400580
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................22141.00411100390
.....................................................................................................................................................................TATACCTTCAGTATACGTAACC..........................................................................................22134.00340000340
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................22132.00325300240
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................22129.00295100230
................................................................................................................................ACGTATACTGAATGTATCCC.................................................................................................................................20124.00240000240
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................20122.00225100160
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................22118.00182100150
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..........................................................................................25114.00140000140
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................21113.00130000130
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................21111.0011230060
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................20111.00111100000
.................................................................................................................................CGTATACTGAATGTATCCTGAAA.............................................................................................................................23110.00100000100
.................................................................................................................................CGTATACTGAATGTATCCTGACC.............................................................................................................................23110.00100000100
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1919.009800010
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1819.009100080
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1819.009000090
................................................................................................................................ACGTATACTGAATGTATCCTGATC.............................................................................................................................2418.008000080
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2218.008200060
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1917.007300040
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACC..........................................................................................2516.006000060
.....................................................................................................................................................................TATACCTTCAGTATACGTAACAC.........................................................................................2315.005010040
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2115.005200030
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1914.004400000
.............................................................................................................................TATACGTATACTGAATGTATCC..................................................................................................................................2214.004100030
..............................................................................................................................ATACGTATACTGAATGTATCCT.................................................................................................................................2214.004000040
...................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...........................................................................................2314.004000040
.................................................................................................................................CGTATACTGAATGTATCCTGTT..............................................................................................................................2214.004000040
......................................................................................................................................................................ATACCTTCAGTATACGTAAC...........................................................................................2014.004000040
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2314.004000040
................................................................................................................................ACGTATACTGAATGTATCCTGAAA.............................................................................................................................2414.004000040
......................................................................................................................................................................ATACCTTCAGTATACGTAACAC.........................................................................................2213.003000030
..................................................................................................................................GTATACTGAATGTATCCTGAA..............................................................................................................................2113.003000030
.................................................................................................................................CGTATACTGAATGTATCCTGATC.............................................................................................................................2313.003000030
................................................................................................................................ACGTATACTGAATGTATCCTGAGT.............................................................................................................................2413.003000030
....................................................................................................................................................................GTATACCTTCAGTATACGTAAC...........................................................................................2213.003100020
..................................................................................................................................GTATACTGAATGTATCCTGAC..............................................................................................................................2113.003100020
................................................................................................................................ACGTATACTGAATGTATCCTGATA.............................................................................................................................2413.003000030
................................................................................................................................ACGTATACTGAATGTATCCTGACC.............................................................................................................................2413.003000030
..................................................................................................................................GTATACTGAATGTATCCTGAAA.............................................................................................................................2213.003000030
...............................................................................................................................TACGTATACTGAATGTATCCTG................................................................................................................................2213.003110010
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2213.003010020
..................................................................................................................................................................CGGTATACCTTCAGTATACGC..............................................................................................2112.002000020
................................................................................................................................ACGTATACTGAATGTATCCTC................................................................................................................................2112.002100010
......................................................................................................................................................................ATACCTTCAGTATACGTAACT..........................................................................................2112.002200000
...............................................................................................................................TACGTATACTGAATGTATCCTGA...............................................................................................................................2312.002200000
.................................................................................................................................CGTATACTGAATGTATCCTGATA.............................................................................................................................2312.002000020
.................................................................................................................................CGTATACTGAATGTATCCTGACA.............................................................................................................................2312.002000020
......................................................................................................................................................................ATACCTTCAGTATACGTAACA..........................................................................................2112.002100010
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAC............................................................................................2312.002000020
..................................................................................................................................................................CGGTATACCTTCAGTATACGTC.............................................................................................2212.002100010
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................2312.002000020
..................................................................................................................................GTATACTGAATGTATCCTGACC.............................................................................................................................2212.002000020
..................................................................................................................................GTATACTGAATGTATCCTGAAAC............................................................................................................................2311.001000010
..................................................................................................AT----TGTTGAGCCTGTGCAACTT..........................................................................................................................................................2111.001000010
...................................................................................................................................................................GGTATACCTTCAGTATAC................................................................................................1811.001100000
................................................................................................................................................................TCCGGTATACCTTCAGTATACG...............................................................................................2211.001010000
................................................................................................................................ACGTATACTGAATGTATCCTGAAG.............................................................................................................................2411.001000010
.............................................................................................................................................................CTATCCGGTATACCTTCAGTATACGTAAC...........................................................................................2911.001000010
..................................................................................................................................GTATACTGAATGTATCCTGAGC.............................................................................................................................2211.001000010
..................................................................................................................................GTATACTGAATGTATCCTGAAC.............................................................................................................................2211.001000010
..................................................................................................................................GTATACTGAATGTATCCTGAGTT............................................................................................................................2311.001000010
..............................................................................................................................ATACGTATACTGAATGTATCC..................................................................................................................................2111.001000010
droGri2
GTTACA------CTGTGTTTACA---CC---GGGGG-GA---------------------------------CA-CT--C--CAAAGGACACTCTTGTA---------GAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTG--T-----------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................221145.001451450
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................21134.0034340
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21113.0013130
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................2016.00660
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2215.00550
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................2015.00550
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2012.00220
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................2211.00110
...................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...........................................................................................2311.00110
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2211.00110
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1911.00110
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGA...........................................................................................................................2611.00110
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2011.00110
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................2311.00110
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................1911.00110
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................2120.50110
dp5
TCG--A------CTGCA---------CT-------C-GTAATTTT----CTTT------------CA---G-CG-GTTAT----------------GTA-----GGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATACGTCGAAC--------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................2212365.002365193167532505029199272
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211718.0071816503701411158
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21190.009008150300010
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................19189.008901861100000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20160.006006000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................21136.003603311100000
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20133.003302140800000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................24131.003102271100000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................22121.002105110500000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................22119.001904150000000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................23118.00180130100481
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................22115.00150700500030
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................18112.001200100200000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACC..........................................................................................2219.0090180000000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1919.0090900000000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................2318.0080110100230
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2217.0070110500000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2216.0060120300000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2015.0050400100000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................2215.0050230000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2114.0040210001000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2014.0040400000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2214.0040400000000
......................................................................................................................................................................ATACCTTCAGTATACGTAAC...........................................................................................2013.0030120000000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................2213.0030100200000
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................2213.0030210000000
...................................................................................................................................TATACTGAATGTATCCTG................................................................................................................................1812.0020100000001
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..........................................................................................2512.0020020000000
................................................................................................................................ACGTATACTGAATGTATCCC.................................................................................................................................2012.0020020000000
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1912.0020100100000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACAC.........................................................................................2312.0020020000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................2312.0020000100010
...................................................................................................................................................................GGTATACCTTCAGTATAC................................................................................................1812.0020200000000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1912.0020200000000
..................................................................................................................................GTATACTGAATGTATCCTGAC..............................................................................................................................2112.0020020000000
..................................................................................................................................................................CGGTATACCTTCAGTATAC................................................................................................1911.0010100000000
......................................................................................................................................................................ATACCTTCAGTATACGTAACA..........................................................................................2111.0010100000000
................................................................................................................................ACGTATACTGAATGTATCCTGTT..............................................................................................................................2311.0010100000000
................................................................................................................................ACGTATACTGAATGTATCCG.................................................................................................................................2011.0010010000000
.................................................................................................................................CGTATACTGAATGTATCCC.................................................................................................................................1911.0010010000000
..................................................................................................................................GTATACTGAATGTATCCTGAA..............................................................................................................................2111.0010010000000
...............................................................................................................................TACGTATACTGAATGTATCCTG................................................................................................................................2211.0010100000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAGC..........................................................................................2211.0010010000000
.......................................................................................................................................................................TACCTTCAGTATACGTAACACGA.......................................................................................2311.0010010000000
.................................................................................................................................CGTATACTGAATGTATCCTGAGA.............................................................................................................................2311.0010100000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAA............................................................................................2011.0010100000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...........................................................................................2311.0010100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................2311.0010010000000
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1811.0010010000000
................................................................................................................................ACGTATACTGAATGTATCCTGACA.............................................................................................................................2411.0010000000001
................................................................................................................................ACGTATACTGAATGTATCCTGGT..............................................................................................................................2311.0010100000000
..................................................................................................................................GTATACTGAATGTATCCTGAAC.............................................................................................................................2211.0010000000001
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.0010100000000
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2211.0010100000000
.................................................................................................................................CGTATACTGAATGTATCCTGACC.............................................................................................................................2311.0010010000000
.................................................................................................................................CGTATACTGAATGTATCCTGATA.............................................................................................................................2311.0010010000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGC..............................................................................................2111.0010001000000
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................2130.6720010000010
................................................................................................................................ACGTATACTGAATGTATCCTAT...............................................................................................................................2220.5010010000000
droPer2
TCG-----------------------------------TAATTTT----CTTT------------CA---G-CG-GTTAT----------------GTA-----GGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATATGTCGAAC--------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................221266.002669112846010
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211115.0011518915100
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21110.0010280000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2219.009810000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................2018.008080000
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................1916.006501000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2215.005500000
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................2015.005032000
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2213.003210000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................1812.002110000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2112.002020000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................2312.002101000
.................................................................................................................................CGTATACTGAATGTATCCTGG...............................................................................................................................2112.002200000
..................................................................................................................................GTATACTGAATGTATCCTGAT..............................................................................................................................2111.001010000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2011.001010000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1811.001010000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................2211.001010000
...............................................................................................................................TACGTATACTGAATGTATCCTG................................................................................................................................2211.001100000
..................................................................................................................................GTATACTGAATGTATCCTT................................................................................................................................1911.001010000
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2211.001010000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2211.001010000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2011.001010000
......................................................................................................................................................................ATACCTTCAGTATACGTAAC...........................................................................................2011.001001000
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.001010000
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................2211.001010000
droAna3
ACT---------------------------------------------------------------A---G-AACATTAC----------------GGAGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAACGCGGGACGTG--AAA-ACTTAA----TA---------------------------------TTCTGAAATATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................221744.007446369114210
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211507.0050749933002
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21164.00646310000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20148.00484800000
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20135.00352851001
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................19132.00323290000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................21112.00120120000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2219.009090000
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2217.007600100
.....................................................................................................................................................................TATACCTTCAGTATACGTAACC..........................................................................................2215.005050000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................2215.005041000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................1815.005050000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................2314.004310000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................2314.004400000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1914.004400000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................2413.003030000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2213.003300000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1913.003300000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2212.002101000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................2212.002110000
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................2211.001010000
................................................................................................................................ACGTATACTGAATGTATCCTGAGG.............................................................................................................................2411.001100000
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1811.001010000
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1911.001100000
................................................................................................................................ACGTATACTGAATGTATCCC.................................................................................................................................2011.001010000
................................................................................................................................ACGTATACTGAATGTATCCTA................................................................................................................................2111.001100000
.................................................................................................................................CGTATACTGAATGTATCCTGAGT.............................................................................................................................2311.001100000
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2211.001010000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................2311.001010000
................................................................................................................................ACGTATACTGAATGTATCCTGAGT.............................................................................................................................2411.001100000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1811.001100000
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.001100000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2211.001100000
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2111.001010000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..........................................................................................2511.001010000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2011.001100000
..................................................................................................................................GTATACTGAATGTATCCTGATG.............................................................................................................................2211.001100000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................2211.001010000
................................................................................................................................ACGTATACTGAATGTATCCTGACA.............................................................................................................................2411.001100000
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................2130.331100000
droBip1
CTTTAA------TTGCA---------GC---ACTACTATCTTA--------CC------------AG---A-AA-ATTAC----------------GATGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACTTTCAACGCGGGACGTG--AAA-ACTTTGTT--TT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTGCAA------CTGCA---------GT---C-------CTTT--------TTCGTGTCCTTTATAA---G-CA-CTTGC----------------GGATG--ATGATGACTCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACAAGCAACGCGGGATGTG--AAACACTTGA----AAAA---------A-----ATATATGACAT-----------TGTGASizeHit CountTotal NormTotal
No Reads
droFic1
ACG-AA------CTGCA---------GC---GACAC-GTC--T--------TT------------CA---GTCA-CTTTCGCC-------------GGATTTCATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTTTCC--TT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTGCATCTGCAACTGCA-----------------------------------T------------CG---T-CA-CTTTC----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTT---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTGCAA------CTGCA---------GC---GACGC-ATCCTG--------TT------------TG---G-CA-CTTTC----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTTACTGTTAAAACTGTTGAATACGGAACACA---------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
CTGGAT------CTGCA---------GC---GGCGC-ATCTTT--------CT------------CG---G-CA-CTTTT----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG--AAACACTTTATTTTTGAA---------A-----ACACG-----T-----------TGTGASizeHit CountTotal NormTotal
No Reads
droTak1
CTGGAA------CTGCA---------GC---GGCGC-ATCCTT--------CT-----------TTG---G-CA-CTTTT----------------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACACTTTTCTTTTT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CTGGAA------CTGCA------------------C-TTCATT--------TT------------GG---T-CA-CTTTC----------------GGATT--ATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACAGTTTACTTTAAAA---------A-----CCACAAAACACTTTCATTATTTCTCACSizeHit CountTotal NormTotal
No Reads
dm3
TTGGAT------CCGCG---------AC---GACGC-ATAATT--------TT------------CA---G-CA-CTTTT----------------GAATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAACGTGGGATGTG--AAACACTTTT----TA--------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................22115921.0015921000031232933724200000001205000000000010010014171702206153000096210512000000000000000000020012121919322773330910147331105116553611086746623448101027119859727142020003000010000000000000110018204774036410630040000000000002326016001143161240490000003621100004007000003200000000091339292722542091681114091241001110047521602000009003000001000000000000000540120153130000000001401943600524020000002020000000000000223000000011
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................231928.0092800000000000000000000000000000000000000000000000000000000441420570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000020000000000000200000000000000000000000000000000000003000000000000100000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211707.0070700000000231000000000010100000000006100002002210101201000292660000000000000000000000151789010010900301389525020000000263030200000000000100000000004110000001240003000000000004208006172204022000004200200000200000000000000000410211312376221120000000019260000000200600000000000000000000002121122100000000081811002000200000101000000000001000002000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................231701.00701000000156000100000000000000000000000000001000000000000001120000000000000000000000018814116138330035221160113214160300013117514115000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000000000000000100110001000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................221578.0057800000023500000000000000000000000000000000000000000000000300000000000000000000000012914441121000103170215189449164300201018415031000000000000000000000001001000000010000000000000000200001140100000000010000000000000000000000000000000008300107000000001100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................241456.004560000000520000000000000000000000000000000000000000000000020000000000000000000000031263345105900014000000211221100200101421015000000000000000000000000101000000000000000000000000000000100000000000000100000000000000000000000000000004150002000000001100000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................201209.002090000000000000000000000000000000000700000001011000011000020000000000000000000000002018140003010010110212000000000030000100000000000000000000000030001010600000000000000010000011000008000000100000001000000000000000000031013108301314000000004400000009006000000000000000000000070126120000000001501002200100000000000000000000010100000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTAA............................................................................................221154.0015400000004100000000000000000000000000000000000000000000000000000000000000000000000077733960000000000000160000000000910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................211126.00126000000000100000000000000000000000000000000000000000000003600000000000000000000000124846100011000011100300000000001340000000000000000000000000001400000000000000000000000000000000000000000001000000000000000000000000000101000020001000000007200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................231107.00107000000010000000000000000000000000000000000000000000000000000000000000000000000000071826000001000001000200000000006005000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000003310112200003000000001100000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................221103.00103000000000000000000000000000000000000000000001000000000000000000000000000000000000125192210030010101001001100000000000000000000000000001000000001000001000000000000000000010100000002010000000000000000000000000000000000230000140000000000002200000000001000000000000000000000011004000000000001200000100000000000000000000000000100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................23199.0099000000000000000000000001000000000000000000000000000000000000000000000000000000000608110000020000010022000000000001000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000004100321802140000100032000000000000000000000000000000000000000000000000011000023000000000000000000000000000000000015
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................21185.0085000000000000000000000000000000000000001100100000000100006220000000000000000000000504710030900300200020000034000100000000000000000100000000000000000002000000000000000000000001000000000000010000010000000000000000000010000580000000000002200000000000000000000000000000000010001000000000000000000000001000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...........................................................................................23175.00750000000200000000000000000000000000000000000000000000000000000000000000000000000002214141250000000000010000000000000100300000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................22155.00550000000010000000000000000000000000000000001000000100000000000000000000000000000003053500000100000000000000000000000000100000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATAC................................................................................................19148.00480000000000000000000000000000000000000000000000000000000010000000000000000000000001099000000000010102400000000003000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................22142.0042000000001000000000000000000000000000000000000000000000000000000000000000000000000520500000000000010000000000000900000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000110000011001000000005100000000000000000000000000000000000000000000000002100002100000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................22141.0041000000000000000000000000000000000000000000000000000000000000000000000000000000000003500000000100001051000000101120000000000000000000000000010100000001000000000000000000020001100005000000001000000000000000000000000000000040100000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................22135.00350000000112100000000000000000000000000000000000000000000000000000000000000000000004021200000000000000010000000000500000000000000000000000000000000000000000000000000000100100000000020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................20132.0032000000000000000000000001000000000000000000000000000000001000000000000000000000000105100001100000000210100000000000000000000000001001000000000000020003000000000000000010000000000000000000000000000000000000000000000000000071000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGATC.............................................................................................................................24131.003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTA.............................................................................................21129.002900000000000000000000000000000000000000000000000000000000000000000000000000000000011001200000000000000000000000000200000000000000000000000000000000000002000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................22127.00270000000000000000000000000000000000000000000000000000000091710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................22123.0023000000000000000000000000000000000000000000000000000000000000000000000000000000000003900000100000000000000000000400000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AACGTATACTGAATGTATCCTGA...............................................................................................................................23123.0023000000001000000000000000000000000000000000000000000000000100000000000000000000000109900000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................20121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000105800000000000010000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAAA.............................................................................................................................23119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..........................................................................................25118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000160100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................19117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000006010000000000010100000000000000000000000000000000200000000000000000000000000000000010000000000000000000000000000000000000000000000011001100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................18115.0015000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000100000010000000000000000000000000000000000000000020000000000000001003000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAA.............................................................................................................................24114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACAC.........................................................................................23113.0013000000000100000000000000000000000000000000000000000000000000000000000000000000000230000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAA...........................................................................................24112.0012000000001000000000000000000000000000000000000000000000000000000000000000000000000201300000100000002000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................23111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000002200001000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACA..........................................................................................25111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000700200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GTATACCTTCAGTATACGTAAC...........................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000200600000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000330000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000101200000000000000000000000000100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1818.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTG............................................................................................................................2517.007000000000000000000000000000000000000000000000000000000001310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................2017.007000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000010000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100010001000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAACGTATACTGAATGTATCCT.................................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100000010000000000000000000000000000000000000000000000020000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAC............................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGT.............................................................................................................................2416.006000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................TACCTTCAGTATACGTAAC...........................................................................................1916.006000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTAAA...........................................................................................2315.005000000000000000000000000000000000000000000000000000000000000000000000000000000000311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTTC...............................................................................................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAT...........................................................................................2415.005000000010000000000000000000000000000000000000000000000000000000000000000000000000301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTA.............................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAACGTATACTGAATGTATCCTGA...............................................................................................................................2414.004000000010000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGT...........................................................................................................................2614.004000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2214.004000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTTT...............................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGT..............................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAT............................................................................................2313.003000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTAACA..........................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTC.............................................................................................2213.003000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGATA.............................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TACCTTCAGTATACGTAA............................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTAG...............................................................................................................................2212.002000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTA................................................................................................................................2112.002000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGCA..............................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GTATACTGAATGTATCCTGAAC.............................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAC.............................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTTTAT------CTGCATCTAGATCCGCGACACGGC-ATAATT--------TT------------CA---G-CA-CTTTT----------------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG--AAACACTTTT----AA-----------T-----ACACT---------------------TSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................2213761.00376161987114013710338248221303341304386203
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211467.0046731823675227112736102405002
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................221205.002053319900000000000000
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................191137.0013703690392500100000000
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20195.0095126123108513156401000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................23132.0032011900001330022010
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................18132.0032011604500006000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................22126.0026000051001101314000
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21120.0020000100000370000000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................22113.001300500000330200000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................22112.001200000000270300000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................22112.001200400000420002000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20111.001101180000010000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................24111.001100403200100100000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2117.00700410000100100000
........................................................................................................................................TGAATGTATCCTGAGTA............................................................................................................................1736.6720000000911000000000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2016.00600013100000001000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................2316.00600000000121101000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................2316.00600310010010000000
......................................................................................................................................ACTGAATGTATCCTGA...............................................................................................................................1615.00500000000113000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2115.00500000000005000000
..............................................................................................................................AAACGTATACTGAATGTATCCT.................................................................................................................................2215.00500110000010200000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................2214.00400000000130000000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1814.00400000000004000000
........................................................................................................................................TGAATGTATCCTGAGT.............................................................................................................................1633.331000000055000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2313.00300002100000000000
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2213.00300000000011100000
................................................................................................................................ACGTATACTGAATGT......................................................................................................................................1513.00300000000003000000
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................2213.00300110000000100000
..............................................................................................................................AAACGTATACTGAATGTATCCTG................................................................................................................................2313.00300300000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATAC................................................................................................1913.00300111000000000000
..................................................................................................................................................................CGGTATACCTTCAGTATA.................................................................................................1813.00300001200000000000
......................................................................................................................................................................ATACCTTCAGTATACGT..............................................................................................1712.00200000000002000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAC.............................................................................................................................2412.00200200000000000000
...............................................................................................................................AACGTATACTGAATGTATCCTG................................................................................................................................2212.00200200000000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2212.00200000000110000000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2012.00200010000000100000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1912.00200002000000000000
...................................................................................................................................................................GGTATACCTTCAGTATACG...............................................................................................1912.00200002000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGAAA.............................................................................................................................2312.00200200000000000000
................................................................................................................................ACGTATACTGAATGTATCCGA................................................................................................................................2112.00200000000020000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAA.............................................................................................................................2412.00200200000000000000
.........................................................................................................................................GAATGTATCCTGAGT.............................................................................................................................1531.67500000023000000000
........................................................................................................................................TGAATGTATCCTGAG..............................................................................................................................1531.67500000032000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................2311.00100000000010000000
......................................................................................................................................................................ATACCTTCAGTATACGTAA............................................................................................1911.00100000000001000000
..................................................................................................................................................................CGGTATACCTTCAGT....................................................................................................1511.00100000000010000000
...................................................................................................................................TATACTGAATGTATCCTG................................................................................................................................1811.00100000000001000000
...................................................................................................................................................................GGTATACCTTCAGTATACGTA.............................................................................................2111.00100010000000000000
................................................................................................................................ACGTATACTGAATGTA.....................................................................................................................................1611.00100000000001000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGGCG...........................................................................................................................2611.00100000000001000000
......................................................................................................................................................................ATACCTTCAGTATACGTAACA..........................................................................................2111.00100000000100000000
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................2111.00100000000000100000
................................................................................................................................ACGTATACTGAATGTATCCTGACA.............................................................................................................................2411.00100100000000000000
...................................................................................................................................TATACTGAATGTATCCTGATA.............................................................................................................................2111.00100000000010000000
.......................................................................................................................................................................TACCTTCAGTATACGTA.............................................................................................1711.00100000000001000000
................................................................................................................................ACGTATACTGAATGTATCT..................................................................................................................................1911.00100000000000001000
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1811.00100000100000000000
................................................................................................................................ACGTATACTGAATGTATCCTA................................................................................................................................2111.00100000000100000000
.................................................................................................................................CGTATACTGAATGTATCCTGGT..............................................................................................................................2211.00100000001000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGT.............................................................................................................................2411.00100010000000000000
.................................................................................................................................CGTATACTGAATGTATCCTGG...............................................................................................................................2111.00100100000000000000
..........................................................................................................................................AATGTATCCTGAGTA............................................................................................................................15100.90900000036000000000
......................................................................................................................................ACTGAATGTATCCTG................................................................................................................................1520.50100000000001000000
...................................................................................................................................TATACTGAATGTATCCTGAAAA............................................................................................................................2220.50100000000010000000
.........................................................................................................................................GAATGTATCCTGAGTA............................................................................................................................1640.50200000002000000000
................................................................................................................................ACGTATACTGAATGTATTGA.................................................................................................................................2090.11100000000000001000
.........................................................................................................................................GAATGTATCCTGAGTAC...........................................................................................................................17120.08100000001000000000
droSec2
CTTTAT------CTGCATCTAGATCCGCGACACGGC-ATAATT--------TT------------CA---G-CA-CTTTT----------------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG--AAACACTTTT----TA--------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................221859.0085937834771
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211247.002472231230
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21157.005752050
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20123.002316160
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20122.002222000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................2319.0093060
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2219.0093060
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2218.0087010
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................1916.0063030
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2115.0050050
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2015.0054010
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2214.0043010
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2114.0043010
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................2214.0041120
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2113.0033000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................1813.0030030
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2213.0033000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................2412.0021010
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2012.0021010
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1912.0022000
..............................................................................................................................AAACGTATACTGAATGTATCCT.................................................................................................................................2212.0020020
................................................................................................................................ACGTATACTGAATGTATCCTC................................................................................................................................2112.0022000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................2311.0011000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1911.0011000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2211.0011000
................................................................................................................................ACGTATACTGAATGTATCCTGAAG.............................................................................................................................2411.0010010
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................2311.0011000
...............................................................................................................................AACGTATACTGAATGTATCCTG................................................................................................................................2211.0011000
..................................................................................................................GTGCGACCTCGTAAACGTA................................................................................................................................................1911.0010010
.................................................................................................................................CGTATACTGAATGTATCCTGAGT.............................................................................................................................2311.0010010
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................2211.0011000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................2211.0011000
..............................................................................................................................AAACGTATACTGAATGTATCCTGT...............................................................................................................................2411.0010010
.................................................................................................................................................................................................AGCACGAGCAACGTGGGATGTG--............................................................2211.0010010
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.0010010
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAA............................................................................................2311.0011000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1811.0010010
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2211.0010010
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1911.0010010
...................................................................................................................................................................GGTATACCTTCAGTATACGTA.............................................................................................2111.0011000
......................................................................................................................................................................ATACCTTCAGTATACGTAACA..........................................................................................2111.0010010
.................................................................................................................................CGTATACTGAATGTATCCTGG...............................................................................................................................2111.0011000
droYak3
ACAT--------------CTCGATCCGCGACGACGC-GTAATT--------TT------------CA---G-CA-CTTTT----------------GGACT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG--AAACACTTTT----TAATACTGCTTAAT-----ACACGTAGCACTGT-GTTATTTGGTATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................2214354.0043542282392113000030160
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................191496.004960249300000010
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211412.004120287108130101020
..............................................................................................................................AAACGTATACTGAATGTATCCT.................................................................................................................................22195.0095009410000000
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................21179.00790443410000000
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20175.007502238200020110
.....................................................................................................................................................................TATACCTTCAGTATACGTAACAC.........................................................................................23165.0065006500000000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................18147.0047004510000010
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................21135.0035003410000000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................23135.0035023300000000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20129.0029027110000000
..............................................................................................................................AAACGTATACTGAATGTATCCC.................................................................................................................................22128.0028002800000000
..............................................................................................................................AAACGTATACTGAATGTATCC..................................................................................................................................21122.0022002200000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................22121.0021002100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................23118.0018001620000000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................22117.0017001160000000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................22115.0015001410000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................24114.0014001400000000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................22113.0013001200000010
.....................................................................................................................................................................TATACCTTCAGTATACGTAACC..........................................................................................22111.0011001100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................23110.001001810000000
................................................................................................................................ACGTATACTGAATGTATCCC.................................................................................................................................20110.0010001000000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................2219.00903510000000
.................................................................................................................................CGTATACTGAATGTATCCTGAC..............................................................................................................................2218.00800800000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2218.00800610000010
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2118.00802420000000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2016.00603300000000
................................................................................................................................ACGTATACTGAATGTA.....................................................................................................................................1616.00600000000060
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2016.00604200000000
.................................................................................................................................CGTATACTGAATGTATCCTGACC.............................................................................................................................2315.00500500000000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2215.00521200000000
................................................................................................................................ACGTATACTGAATGT......................................................................................................................................1513.00300000000030
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2213.00302100000000
..............................................................................................................................AAACGTATACTGAATGTATCCTG................................................................................................................................2313.00300300000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGT.............................................................................................................................2413.00300210000000
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2112.00201100000000
...............................................................................................................................AACGTATACTGAATGTATCCTG................................................................................................................................2212.00200200000000
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1812.00200200000000
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1912.00201100000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACACT........................................................................................2412.00200200000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..........................................................................................2512.00200200000000
................................................................................................................................ACGTATACTGAATGTATCCTA................................................................................................................................2112.00200200000000
.................................................................................................................................CGTATACTGAATGTATCCTGATA.............................................................................................................................2311.00100100000000
...................................................................................................................................TATACTGAATGTATCCTGAA..............................................................................................................................2011.00100100000000
.............................................................................................................................TAAACGTATACTGAATGTATCC..................................................................................................................................2211.00100100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAAA.............................................................................................................................2411.00100100000000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1911.00101000000000
..............................................................................................................................AAACGTATACTGAATGTATC...................................................................................................................................2011.00100100000000
...............................................................................................................................AACGTATACTGAATGTATCCT.................................................................................................................................2111.00100100000000
..................................................................................................................................GTATACTGAATGTATCCTGAG..............................................................................................................................2111.00101000000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATC........................................................................................................................2911.00100100000000
................................................................................................................................ACGTATACTGAATGTATCCTC................................................................................................................................2111.00100100000000
................................................................................................................................ACGTATACTGAATGTATCT..................................................................................................................................1911.00100100000000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1811.00100100000000
......................................................................................................................................................................ATACCTTCAGTATACGTAACAC.........................................................................................2211.00100100000000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1911.00101000000000
.................................................................................................................................CGTATACTGAATGTATCCTGACA.............................................................................................................................2311.00101000000000
....................................................................................................................................ATACTGAATGTATCCTGAGTGTATCCT......................................................................................................................2711.00100100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGGCC...........................................................................................................................2611.00100100000000
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.00100100000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAC............................................................................................2311.00100100000000
.................................................................................................................................CGTATACTGAATGTATCCTGTT..............................................................................................................................2211.00100100000000
...................................................................................................................................TATACTGAATGTATCCTG................................................................................................................................1811.00101000000000
.....................................................................................................................................TACTGAATGTATCCTGAT..............................................................................................................................1811.00100100000000
..................................................................................................................................GTATACTGAATGTATCCTGATC.............................................................................................................................2211.00100100000000
.................................................................................................................................CGTATACTGAATGTATCCTGAGA.............................................................................................................................2311.00100100000000
..............................................................................................................................AAACGTATACTGAATGTATCCTGA...............................................................................................................................2411.00100100000000
droEre2
CTGGAT------CCGCG---------AC---GACGT-ATAATT--------TT------------CA---G-CA-CTTTT----------------GGATT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG--AAACACTTTT----TA--------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................ACGTATACTGAATGTATCCTGA...............................................................................................................................2211839.0018391431324077520
................................................................................................................................ACGTATACTGAATGTATCCTG................................................................................................................................211645.006456181508310
.................................................................................................................................CGTATACTGAATGTATCCTGA...............................................................................................................................211144.00144135801000
.................................................................................................................................CGTATACTGAATGTATCCTG................................................................................................................................20156.005656000000
................................................................................................................................ACGTATACTGAATGTATCC..................................................................................................................................19134.003423100100
................................................................................................................................ACGTATACTGAATGTATCCT.................................................................................................................................20131.003123402110
..............................................................................................................................AAACGTATACTGAATGTATCCT.................................................................................................................................22115.001521102000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACA..........................................................................................22110.00103502000
................................................................................................................................ACGTATACTGAATGTATCCTGAA..............................................................................................................................2318.0088000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACAC.........................................................................................2318.0080800000
................................................................................................................................ACGTATACTGAATGTATCCTT................................................................................................................................2118.0087001000
................................................................................................................................ACGTATACTGAATGTATCCTGT...............................................................................................................................2218.0085300000
..................................................................................................................................GTATACTGAATGTATCCTGA...............................................................................................................................2018.0088000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAAC...........................................................................................2118.0080800000
..................................................................................................................................................................CGGTATACCTTCAGTATACG...............................................................................................2015.0055000000
................................................................................................................................ACGTATACTGAATGTATCCTGAT..............................................................................................................................2315.0054100000
................................................................................................................................ACGTATACTGAATGTATCCTGG...............................................................................................................................2214.0043001000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTA.............................................................................................2214.0044000000
..................................................................................................................................GTATACTGAATGTATCCTG................................................................................................................................1913.0033000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...........................................................................................2412.0020200000
.................................................................................................................................CGTATACTGAATGTATCCT.................................................................................................................................1912.0022000000
....................................................................................................................................ATACTGAATGTATCCTGA...............................................................................................................................1812.0021100000
...................................................................................................................................TATACTGAATGTATCCTGA...............................................................................................................................1912.0022000000
..............................................................................................................................AAACGTATACTGAATGTATCC..................................................................................................................................2112.0020200000
................................................................................................................................ACGTATACTGAATGTATC...................................................................................................................................1812.0020200000
......................................................................................................................................................................ATACCTTCAGTATACGTAACAC.........................................................................................2212.0020200000
...................................................................................................................................................................GGTATACCTTCAGTATACG...............................................................................................1912.0022000000
..............................................................................................................................AAACGTATACTGAATGTATCCTC................................................................................................................................2311.0010001000
................................................................................................................................ACGTATACTGAATGTATCCTGAC..............................................................................................................................2311.0011000000
................................................................................................................................ACGTATACTGAATGTATCCTGAG..............................................................................................................................2311.0011000000
...................................................................................................................................TATACTGAATGTATCCTG................................................................................................................................1811.0011000000
...................................................................................................................................TATACTGAATGTATCCTGAAA.............................................................................................................................2111.0011000000
.................................................................................................................................CGTATACTGAATGTATCCTGACA.............................................................................................................................2311.0010100000
.......................................................................................................................................................................TACCTTCAGTATACGTAACT..........................................................................................2011.0011000000
.............................................................................................................................TAAACGTATACTGAATGTATCC..................................................................................................................................2211.0010100000
..............................................................................................................................AAACGTATACTGAATGTATCCC.................................................................................................................................2211.0010100000
..............................................................................................................................AAACGTATACTGAATGTATCCTGA...............................................................................................................................2411.0011000000
..................................................................................................................................................................CGGTATACCTTCAGTATA.................................................................................................1811.0010000100
.................................................................................................................................CGTATACTGAATGTATCCTGAG..............................................................................................................................2211.0011000000
..................................................................................................................................GTATACTGAATGTATCCTGAA..............................................................................................................................2111.0011000000
........................................................................................................................................................................ACCTTCAGTATACGTAACA..........................................................................................1911.0010100000
.......................................................................................................................................................................TACCTTCAGTATACGTAAC...........................................................................................1911.0010100000
......................................................................................................................................................................ATACCTTCAGTATACGTAAC...........................................................................................2011.0011000000
.................................................................................................................................CGTATACTGAATGTATCCTGT...............................................................................................................................2111.0011000000
................................................................................................................................ACGTATACTGAATGTATCCTGAGTA............................................................................................................................2511.0011000000
.................................................................................................................................CGTATACTGAATGTATCC..................................................................................................................................1811.0010100000
................................................................................................................................ACGTATACTGAATGTATCCTGC...............................................................................................................................2211.0011000000
..................................................................................................................................................................CGGTATACCTTCAGTATACGT..............................................................................................2111.0010001000
..................................................................................................................................GTATACTGAATGTATCCTGATA.............................................................................................................................2211.0011000000
.................................................................................................................................CGTATACTGAATGTATCCTGAA..............................................................................................................................2211.0011000000
.....................................................................................................................................................................TATACCTTCAGTATACGTAACT..........................................................................................2211.0010100000
.................................................................................................................................CGTATACTGAATGTATCCTGAT..............................................................................................................................2211.0011000000
.................................................................................................................................................................CCGGTATACCTTCAGTATACGTAAC...........................................................................................2511.0010100000
................................................................................................................................ACGTATACTGAATGTATCCC.................................................................................................................................2011.0010100000
................................................................................................................................ACGTATACTGAATGTATCCTC................................................................................................................................2111.0011000000
.................................................................................................................................................................................................................GATGTG--AAACACTTTT----TT--------------------------------------------1820.5010001000
................................................................................................................................ACGTATACTGAATGTATCTG.................................................................................................................................2020.5011000000

Generated: 10/20/2015 at 07:45 PM