ID:

dwi-mir-5

 Coordinate:

scf2_1100000004514:1651468-1651540 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8 -29.7 -29.0

Flybase annnotation

pre_miRNA [Dwil\mir-5-RM]; utr3 [utr3_minus_3616]; miRNA [Dwil\miR-5-RA]

No Repeatable elements found

Sense Strand Reads

ACATCAATAGCAAAGTTCAAGTTTCATCGTCGTTTTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTCACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTTCTGTCCAATATATCAACAATATCCAGCAAAGTTTTCAAGTG

***************************************..(((((((.((((((((((((.(((((((((((((((((..........)))...))))))))))))))))))))).))))).)))...))))**************************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 M045

female body

 V119

head

 M020

head

 V117

male body
......................................................AAAGGAACGATCGTTGTGATATG................................................................................................ 23 0 1 51810.00 51810 51336 332 101 38 3
......................................................AAAGGAACGATCGTTGTGATAT................................................................................................. 22 0 1 23023.00 23023 22698 158 104 56 7
................................................................................................TATCACAGTGATTTTCCTTTAT....................................................... 22 0 1 11546.00 11546 11308 196 42 0 0
................................................................................................TATCACAGTGATTTTCCTTTATA...................................................... 23 0 1 4116.00 4116 3991 115 10 0 0
......................................................AAAGGAACGATCGTTGTGATA.................................................................................................. 21 0 1 2328.00 2328 2264 10 13 41 0
......................................................AAAGGAACGATCGTTGTGAT................................................................................................... 20 0 1 1803.00 1803 1665 6 36 88 8
.................................................................................................ATCACAGTGATTTTCCTTTAT....................................................... 21 0 1 1381.00 1381 1346 30 5 0 0
.................................................................................................ATCACAGTGATTTTCCTTTATA...................................................... 22 0 1 408.00 408 391 16 1 0 0
......................................................AAAGGAACGATCGTTGTGATATT................................................................................................ 23 1 1 351.00 351 349 0 0 1 1
................................................................................................TATCACAGTGATTTTCCTTTATAA..................................................... 24 1 1 283.00 283 273 10 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGA............................................................................................... 24 1 1 276.00 276 269 6 0 1 0
......................................................AAAGGAACGATCGTTGTGATATGT............................................................................................... 24 1 1 275.00 275 270 5 0 0 0
...................................TTTTCTGGGCCATTCGCTA....................................................................................................................... 19 0 1 181.00 181 177 4 0 0 0
......................................................AAATGAACGATCGTTGTGATATG................................................................................................ 23 1 1 143.00 143 142 1 0 0 0
................................................................................................TATCACAGTGATTTTCCTTT......................................................... 20 0 1 140.00 140 139 1 0 0 0
................................................................................................TATCACAGTGATTTTCCT........................................................... 18 0 1 117.00 117 116 0 1 0 0
......................................................AAAGTAACGATCGTTGTGATATG................................................................................................ 23 1 1 111.00 111 108 3 0 0 0
......................................................AAAGGAACGATCGTTGCGATATG................................................................................................ 23 1 1 111.00 111 110 1 0 0 0
......................................................AAAGGAACTATCGTTGTGATATG................................................................................................ 23 1 1 96.00 96 96 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATC................................................................................................ 23 1 1 82.00 82 80 1 0 1 0
.......................................................AAGGAACGATCGTTGTGATATG................................................................................................ 22 0 1 79.00 79 42 37 0 0 0
......................................................AAAGGAACGATCGTTGTTATATG................................................................................................ 23 1 1 77.00 77 77 0 0 0 0
......................................................AAATGAACGATCGTTGTGATAT................................................................................................. 22 1 1 76.00 76 76 0 0 0 0
......................................................AAAGGAACGATCGCTGTGATATG................................................................................................ 23 1 1 76.00 76 76 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTA........................................................ 21 0 1 75.00 75 72 2 1 0 0
......................................................AAAGGAACGATCTTTGTGATATG................................................................................................ 23 1 1 72.00 72 72 0 0 0 0
................................................................................................TATCACAGCGATTTTCCTTTAT....................................................... 22 1 1 66.00 66 66 0 0 0 0
......................................................AAAGGAGCGATCGTTGTGATATG................................................................................................ 23 1 1 65.00 65 64 0 0 1 0
......................................................AAAGGAACGATCGTTGTGATATA................................................................................................ 23 1 1 62.00 62 61 1 0 0 0
......................................................AAAGGGACGATCGTTGTGATATG................................................................................................ 23 1 1 61.00 61 61 0 0 0 0
......................................................AACGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 59.00 59 59 0 0 0 0
......................................................AAAGGCACGATCGTTGTGATATG................................................................................................ 23 1 1 53.00 53 53 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATAT................................................................................................. 22 1 1 52.00 52 52 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTATG................................................................................................ 23 1 1 52.00 52 52 0 0 0 0
......................................................AAAGGAACGATCGTTGCGATAT................................................................................................. 22 1 1 51.00 51 51 0 0 0 0
......................................................AAAGGAACTATCGTTGTGATAT................................................................................................. 22 1 1 51.00 51 51 0 0 0 0
......................................................AAAGGAACGATCGTCGTGATATG................................................................................................ 23 1 1 51.00 51 51 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATAT................................................................................................. 22 1 1 50.00 50 49 0 0 1 0
......................................................AAAGGAACGATCGTTGTGA.................................................................................................... 19 0 1 49.00 49 48 0 0 1 0
......................................................AAAGGAACGGTCGTTGTGATATG................................................................................................ 23 1 1 49.00 49 49 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGC............................................................................................... 24 0 1 48.00 48 48 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATATG................................................................................................ 23 1 1 48.00 48 47 0 1 0 0
......................................................ACAGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 47.00 47 46 0 1 0 0
......................................................AAAGGAACGATCGTTGTGATAC................................................................................................. 22 1 1 47.00 47 46 0 0 0 1
......................................................AAAGGAACGATAGTTGTGATATG................................................................................................ 23 1 1 47.00 47 46 0 1 0 0
......................................................AAAGGAACGATCGTTGTG..................................................................................................... 18 0 1 46.00 46 45 1 0 0 0
......................................................AAGGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 45.00 45 44 0 1 0 0
................................................................................................TATCACAGTGATTTTCCTTTATAT..................................................... 24 1 1 44.00 44 43 1 0 0 0
......................................................AAAGGAACGACCGTTGTGATATG................................................................................................ 23 1 1 41.00 41 41 0 0 0 0
......................................................AAAGGAACGATCATTGTGATATG................................................................................................ 23 1 1 41.00 41 41 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATCTG................................................................................................ 23 1 1 41.00 41 41 0 0 0 0
......................................................AAAGGAACAATCGTTGTGATATG................................................................................................ 23 1 1 38.00 38 38 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATACG................................................................................................ 23 1 1 37.00 37 37 0 0 0 0
......................................................AAAGGAACGATCGTTGTGACATG................................................................................................ 23 1 1 36.00 36 35 1 0 0 0
......................................................AAACGAACGATCGTTGTGATATG................................................................................................ 23 1 1 36.00 36 35 0 1 0 0
......................................................AAAGCAACGATCGTTGTGATATG................................................................................................ 23 1 1 35.00 35 35 0 0 0 0
......................................................AAAGGAACGATTGTTGTGATATG................................................................................................ 23 1 1 35.00 35 35 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATATG................................................................................................ 23 1 1 35.00 35 34 1 0 0 0
......................................................GAAGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 35.00 35 34 1 0 0 0
......................................................AAAGGAACGATCGTTGTGATGTG................................................................................................ 23 1 1 34.00 34 34 0 0 0 0
......................................................AAAGGAACGATCGTTTTGATATG................................................................................................ 23 1 1 33.00 33 33 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATATG................................................................................................ 23 1 1 32.00 32 31 0 1 0 0
.......................................................AAGGAACGATCGTTGTGATAT................................................................................................. 21 0 1 31.00 31 15 15 1 0 0
......................................................AAAGGAACGATCGCTGTGATAT................................................................................................. 22 1 1 31.00 31 31 0 0 0 0
......................................................AAAGAAACGATCGTTGTGATATG................................................................................................ 23 1 1 30.00 30 30 0 0 0 0
....................................................TAAAAGGAACGATCGTTGTGAT................................................................................................... 22 0 1 30.00 30 30 0 0 0 0
......................................................ACAGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 30.00 30 30 0 0 0 0
......................................................AAAGGAACGATCGTTGTGCTATG................................................................................................ 23 1 1 30.00 30 30 0 0 0 0
......................................................AACGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 29.00 29 28 0 1 0 0
......................................................AAGGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 28.00 28 28 0 0 0 0
......................................................AAAGGACCGATCGTTGTGATATG................................................................................................ 23 1 1 28.00 28 28 0 0 0 0
......................................................AAAGGAACGATCGTTGTAATATG................................................................................................ 23 1 1 28.00 28 28 0 0 0 0
......................................................AAAGGAACGATCGTTGGGATATG................................................................................................ 23 1 1 27.00 27 27 0 0 0 0
......................................................AAAGGAACGATCGTTGTCATATG................................................................................................ 23 1 1 27.00 27 27 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTATT...................................................... 23 1 1 27.00 27 27 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................. 25 2 1 26.00 26 26 0 0 0 0
......................................................AAAGGAACGCTCGTTGTGATATG................................................................................................ 23 1 1 26.00 26 26 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 26.00 26 26 0 0 0 0
....................................................................................................ACAGTGATTTTCCTTTAT....................................................... 18 0 1 24.00 24 24 0 0 0 0
................................................................................................TATCACAGTGCTTTTCCTTTAT....................................................... 22 1 1 24.00 24 24 0 0 0 0
................................................................................................TATCACAGTGATTTTCCCTTAT....................................................... 22 1 1 24.00 24 24 0 0 0 0
......................................................AAAGGAACGATCGTTTTGATAT................................................................................................. 22 1 1 24.00 24 22 0 1 1 0
......................................................AAAGGAACGATCGTTGTTATAT................................................................................................. 22 1 1 23.00 23 23 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATATG................................................................................................ 23 1 1 23.00 23 23 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATAT................................................................................................. 22 1 1 23.00 23 23 0 0 0 0
......................................................AAAGGAACGATCGTTATGATATG................................................................................................ 23 1 1 23.00 23 23 0 0 0 0
......................................................AAAGGAGCGATCGTTGTGATAT................................................................................................. 22 1 1 22.00 22 22 0 0 0 0
................................................................................................TATCACAGTGATTTTCATTTAT....................................................... 22 1 1 22.00 22 22 0 0 0 0
..................................................................................................TCACAGTGATTTTCCTTTAT....................................................... 20 0 1 22.00 22 21 1 0 0 0
................................................................................................TATCGCAGTGATTTTCCTTTAT....................................................... 22 1 1 21.00 21 21 0 0 0 0
......................................................AAAGGAACGATCATTGTGATAT................................................................................................. 22 1 1 20.00 20 19 0 1 0 0
..................................................................................................TCACAGTGATTTTCCTTTATA...................................................... 21 0 1 20.00 20 18 2 0 0 0
......................................................AAAGGAACGATTGTTGTGATAT................................................................................................. 22 1 1 20.00 20 20 0 0 0 0
......................................................AAAGGAACGACCGTTGTGATAT................................................................................................. 22 1 1 20.00 20 20 0 0 0 0
......................................................AAAGGCACGATCGTTGTGATAT................................................................................................. 22 1 1 20.00 20 20 0 0 0 0
................................................................................................TATCACAGTGATCTTCCTTTAT....................................................... 22 1 1 20.00 20 19 1 0 0 0
......................................................AAAGGAACGATCGTTCTGATATG................................................................................................ 23 1 1 20.00 20 18 2 0 0 0
......................................................AAAGGAACGGTCGTTGTGATAT................................................................................................. 22 1 1 20.00 20 20 0 0 0 0
................................................................................................TATCACAGCGATTTTCCTTTATA...................................................... 23 1 1 19.00 19 18 0 1 0 0
......................................................AAAGGAACAATCGTTGTGATAT................................................................................................. 22 1 1 19.00 19 19 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTATAAA.................................................... 25 2 1 19.00 19 19 0 0 0 0
......................................................AAACGAACGATCGTTGTGATAT................................................................................................. 22 1 1 19.00 19 19 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATAT................................................................................................. 22 1 1 19.00 19 19 0 0 0 0
......................................................GAAGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 18.00 18 17 0 1 0 0
......................................................AAAGGAACGATCGTTGTGGTAT................................................................................................. 22 1 1 18.00 18 18 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATAT................................................................................................. 22 1 1 18.00 18 18 0 0 0 0
................................................................................................TATCACATTGATTTTCCTTTAT....................................................... 22 1 1 17.00 17 17 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATGT................................................................................................. 22 1 1 17.00 17 17 0 0 0 0
......................................................AAAGAAACGATCGTTGTGATAT................................................................................................. 22 1 1 17.00 17 17 0 0 0 0
......................................................AAAGGAACGATCGTCGTGATAT................................................................................................. 22 1 1 16.00 16 16 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATAT................................................................................................. 22 1 1 16.00 16 15 1 0 0 0
......................................................AAAGGAACGAACGTTGTGATATG................................................................................................ 23 1 1 15.00 15 15 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATAT................................................................................................. 22 1 1 14.00 14 13 0 1 0 0
......................................................AAAGGAACGATCGTTGTGATAA................................................................................................. 22 1 1 14.00 14 14 0 0 0 0
......................................................AAAGCAACGATCGTTGTGATAT................................................................................................. 22 1 1 14.00 14 14 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTAC....................................................... 22 1 1 14.00 14 14 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTGT....................................................... 22 1 1 14.00 14 14 0 0 0 0
......................................................CAAGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 13.00 13 11 0 2 0 0
......................................................AAAGGAACGATCGTTGAGATATG................................................................................................ 23 1 1 13.00 13 11 0 2 0 0
................................................................................................TATCACAGTTATTTTCCTTTAT....................................................... 22 1 1 13.00 13 13 0 0 0 0
..................................................................................................TCACAGTGATTTTCCTTTATAA..................................................... 22 1 1 13.00 13 12 1 0 0 0
......................................................AAAGGAACGATCGTTGTGCTAT................................................................................................. 22 1 1 13.00 13 13 0 0 0 0
.................................................................................................ATCACAGTGATTTTCCTTTATAA..................................................... 23 1 1 13.00 13 13 0 0 0 0
..................................TTTTTCTGGGCCATTCGCTA....................................................................................................................... 20 0 1 13.00 13 13 0 0 0 0
......................................................AAAGGAACGATCGTTGTGACAT................................................................................................. 22 1 1 13.00 13 12 0 1 0 0
.......................................................AAAGAACGATCGTTGTGATATG................................................................................................ 22 1 1 12.00 12 12 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTATG................................................................................................ 23 1 1 12.00 12 12 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGAA.............................................................................................. 25 2 1 12.00 12 12 0 0 0 0
..................................................................................................TCACAGTGATTTTCCTTTATAT..................................................... 22 1 1 12.00 12 12 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATCT................................................................................................. 22 1 1 12.00 12 12 0 0 0 0
......................................................AAAGGAACGATCCTTGTGATATG................................................................................................ 23 1 1 12.00 12 12 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATACC................................................................................................ 23 2 1 11.00 11 11 0 0 0 0
................................................................................................TACCACAGTGATTTTCCTTTAT....................................................... 22 1 1 11.00 11 11 0 0 0 0
......................................................AAAGGAACGCTCGTTGTGATAT................................................................................................. 22 1 1 11.00 11 11 0 0 0 0
.....................................................CAAAGGAACGATCGTTGTGATATG................................................................................................ 24 1 1 11.00 11 10 1 0 0 0
......................................................AAAGGAACGATCGTTATGATAT................................................................................................. 22 1 1 11.00 11 10 0 1 0 0
................................................................................................TATCACGGTGATTTTCCTTTAT....................................................... 22 1 1 10.00 10 10 0 0 0 0
................................................................................................TATCACAGTGATTTTACTTTAT....................................................... 22 1 1 10.00 10 10 0 0 0 0
........................................................AGGAACGATCGTTGTGATATG................................................................................................ 21 0 1 10.00 10 5 5 0 0 0
......................................................AGAGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 10.00 10 10 0 0 0 0
................................................................................................TATCACAGTGACTTTCCTTTAT....................................................... 22 1 1 10.00 10 8 2 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTT........................................................ 21 1 1 10.00 10 10 0 0 0 0
................................................................................................TATTACAGTGATTTTCCTTTAT....................................................... 22 1 1 10.00 10 10 0 0 0 0
................................................................................................TATCACAGTGATTTTCATTTATA...................................................... 23 1 1 10.00 10 10 0 0 0 0
................................................................................................TCTCACAGTGATTTTCCTTTAT....................................................... 22 1 1 9.00 9 9 0 0 0 0
..........................................................AAACGATCGTTGTGATATG................................................................................................ 19 1 1 9.00 9 9 0 0 0 0
................................................................................................TATCACAGTTATTTTCCTTTATA...................................................... 23 1 1 9.00 9 9 0 0 0 0
................................................................................................TATCACAGTGATTTCCCTTTAT....................................................... 22 1 1 9.00 9 9 0 0 0 0
......................................................AAAGGAACGATCGTTGTCATAT................................................................................................. 22 1 1 9.00 9 9 0 0 0 0
................................................................................................CATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 9.00 9 7 1 1 0 0
....................................................................................................ACAGTGATTTTCCTTTATA...................................................... 19 0 1 9.00 9 9 0 0 0 0
......................................................AAAGGAACGATCGTTGGGATAT................................................................................................. 22 1 1 9.00 9 9 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTAT................................................................................................. 22 1 1 8.00 8 8 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTCAT....................................................... 22 1 1 8.00 8 8 0 0 0 0
................................................................................................TATCACAGTGATCTTCCTTTATA...................................................... 23 1 1 8.00 8 8 0 0 0 0
......................................................AAAGGACCGATCGTTGTGATAT................................................................................................. 22 1 1 8.00 8 8 0 0 0 0
.................................................................................................ATCACAGTGATTTTCCTTT......................................................... 19 0 1 8.00 8 8 0 0 0 0
......................................................AAAGGAACGATCGTTGTTATA.................................................................................................. 21 1 1 7.00 7 7 0 0 0 0
......................................................AAAGGAACGATGGTTGTGATATG................................................................................................ 23 1 1 7.00 7 7 0 0 0 0
................................................................................................TATAACAGTGATTTTCCTTTATA...................................................... 23 1 1 7.00 7 7 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAAATG................................................................................................ 23 1 1 7.00 7 7 0 0 0 0
................................................................................................TATCACATTGATTTTCCTTTATA...................................................... 23 1 1 7.00 7 7 0 0 0 0
......................................................AAAGGAACGATCGTTGAGATAT................................................................................................. 22 1 1 7.00 7 7 0 0 0 0
................................................................................................TATAACAGTGATTTTCCTTTAT....................................................... 22 1 1 7.00 7 7 0 0 0 0
......................................................AAAGGAACGATCGTTGCGATA.................................................................................................. 21 1 1 7.00 7 7 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTT.......................................................... 19 0 1 7.00 7 7 0 0 0 0
......................................................AAAGGAACGATCCTTGTGATAT................................................................................................. 22 1 1 7.00 7 7 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATAT................................................................................................. 22 1 1 7.00 7 6 0 1 0 0
......................................................AAAGGTACGATCGTTGTGATATG................................................................................................ 23 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCAAAGTGATTTTCCTTTAT....................................................... 22 1 1 6.00 6 5 0 1 0 0
......................................................AAAGGAACGATCGATGTGATATG................................................................................................ 23 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCACAGGGATTTTCCTTTAT....................................................... 22 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCATAGTGATTTTCCTTTAT....................................................... 22 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCACAGTGATTCTCCTTTAT....................................................... 22 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCACAGTGATTTTACTTTATA...................................................... 23 1 1 6.00 6 6 0 0 0 0
......................................................AAAGGAACGATCGTTGTAATAT................................................................................................. 22 1 1 6.00 6 6 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGG............................................................................................... 24 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCGCAGTGATTTTCCTTTATA...................................................... 23 1 1 6.00 6 6 0 0 0 0
......................................................AATGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 6.00 6 6 0 0 0 0
......................................................AAAGGTACGATCGTTGTGATAT................................................................................................. 22 1 1 6.00 6 6 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATA.................................................................................................. 21 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCAAAGTGATTTTCCTTTATA...................................................... 23 1 1 6.00 6 6 0 0 0 0
................................................................................................TATCCCAGTGATTTTCCTTTAT....................................................... 22 1 1 6.00 6 6 0 0 0 0
......................................................AAAGGAAGGATCGTTGTGATATG................................................................................................ 23 1 1 6.00 6 6 0 0 0 0
........................................................ATGAACGATCGTTGTGATATG................................................................................................ 21 1 1 6.00 6 6 0 0 0 0
.............................................................................CGTTAGATTCACCGTTATA............................................................................. 19 0 1 6.00 6 6 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATG.................................................................................................. 21 1 1 6.00 6 6 0 0 0 0
......................................................AAAGGAACGATCGTTCTGATAT................................................................................................. 22 1 1 5.00 5 5 0 0 0 0
...........................................................AACGATCGTTGTGATATG................................................................................................ 18 0 1 5.00 5 4 1 0 0 0
......................................................AAAGGAACGATCGTTGTGATTTG................................................................................................ 23 1 1 5.00 5 5 0 0 0 0
................................................................................................CATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGTGATTTTCCCTTATA...................................................... 23 1 1 5.00 5 5 0 0 0 0
......................................................CAAGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 5.00 5 5 0 0 0 0
......................................................AAAGTAACGATCGTTGTGAT................................................................................................... 20 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGAGATTTTCCTTTAT....................................................... 22 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGTGCTTTTCCTTTATA...................................................... 23 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTATAG..................................................... 24 0 1 5.00 5 5 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAC................................................................................................... 20 1 1 5.00 5 2 0 1 2 0
................................................................................................TATCACGGTGATTTTCCTTTATA...................................................... 23 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGTGATTCTCCTTTATA...................................................... 23 1 1 5.00 5 5 0 0 0 0
......................................................AAAGGATCGATCGTTGTGATATG................................................................................................ 23 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAATGATTTTCCTTTAT....................................................... 22 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGTGACTTTCCTTTATA...................................................... 23 1 1 5.00 5 5 0 0 0 0
.....................................................................................................CAGTGATTTTCCTTTATA...................................................... 18 0 1 5.00 5 5 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 5.00 5 4 0 0 1 0
................................................................................................TATCACAGTGATTTTCCTTTAA....................................................... 22 1 1 5.00 5 3 2 0 0 0
................................................................................................TGTCACAGTGATTTTCCTTTAT....................................................... 22 1 1 5.00 5 5 0 0 0 0
......................................................AAATGAACGATCGTTGTGATA.................................................................................................. 21 1 1 5.00 5 5 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATA.................................................................................................. 21 1 1 5.00 5 5 0 0 0 0
...............................................................................................CTATCACAGTGATTTTCCTTTAT....................................................... 23 1 1 5.00 5 5 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTAT........................................................ 21 2 1 5.00 5 4 1 0 0 0
......................................................AAAGGAACGATCGTTGATAT................................................................................................... 20 2 4 4.75 19 18 0 0 1 0
......................................................AAAGGAACGATCGCTGTGATA.................................................................................................. 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGCAACGATCGTTGTGATA.................................................................................................. 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAAG................................................................................................ 23 1 1 4.00 4 4 0 0 0 0
................................................................................................TATCACAGTCATTTTCCTTTAT....................................................... 22 1 1 4.00 4 4 0 0 0 0
................................................................................................TATCACAGTGATTTTCTTTTAT....................................................... 22 1 1 4.00 4 3 0 1 0 0
.................................................................................................ATCACAGTGATTTTCCTTTATAT..................................................... 23 1 1 4.00 4 4 0 0 0 0
.................................................................................................ATCGCAGTGATTTTCCTTTAT....................................................... 21 1 1 4.00 4 4 0 0 0 0
.................................................................................................ATCACAGTGATTTTCCTTTA........................................................ 20 0 1 4.00 4 4 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTCTATA...................................................... 23 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTTT............................................................................................. 26 2 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATGGTTGTGATAT................................................................................................. 22 1 1 4.00 4 2 2 0 0 0
......................................................AAAGGAACGATAGTTGTGAT................................................................................................... 20 1 1 4.00 4 4 0 0 0 0
.......................................................AAAGAACGATCGTTGTGATAT................................................................................................. 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTA.................................................................................................. 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGGTGTGATATG................................................................................................ 23 1 1 4.00 4 4 0 0 0 0
.................................................................................................ATCACAGTGATTTTCATTTAT....................................................... 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTA.............................................................................................. 25 2 1 4.00 4 4 0 0 0 0
........................................................AAGAACGATCGTTGTGATATG................................................................................................ 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTC.............................................................................................. 25 2 1 4.00 4 4 0 0 0 0
.................................................................................................ATCACAGTTATTTTCCTTTAT....................................................... 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTTGCGAT................................................................................................... 20 1 1 4.00 4 4 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTACA...................................................... 23 1 1 4.00 4 4 0 0 0 0
.....................................................CAAAGGAACGATCGTTGTGATAT................................................................................................. 23 1 1 4.00 4 4 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTGTA...................................................... 23 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGATCGTCGTGATA.................................................................................................. 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGTTCGTTGTGATAT................................................................................................. 22 1 1 4.00 4 4 0 0 0 0
................................................................................................TATCATAGTGATTTTCCTTTATA...................................................... 23 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACTATCGTTGTGATA.................................................................................................. 21 1 1 4.00 4 4 0 0 0 0
......................................................AAAGGAACGTTCGTTGTGATATG................................................................................................ 23 1 1 4.00 4 4 0 0 0 0
................................................................................................TATCACAGTGGCTTTCTTTT......................................................... 20 3 20 3.40 68 68 0 0 0 0
................................................................................................TACCACAGTGATTTTCCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGGTGTGATAT................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACACTGATTTTCCTTTAT....................................................... 22 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCATTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TCTCACAGTGATTTTCCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTGGTGATAT................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTTTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTCT....................................................... 22 1 1 3.00 3 3 0 0 0 0
....................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................. 23 0 1 3.00 3 3 0 0 0 0
......................................................AAAGGCACGATCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAGATG................................................................................................ 23 1 1 3.00 3 3 0 0 0 0
.................................................................................................ATCACAGTGCTTTTCCTTTAT....................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATTT................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
.................................................................................................ATCACATTGATTTTCCTTTAT....................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGATTATCCTTTAT....................................................... 22 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTGTT..................................................................................................... 18 1 1 3.00 3 3 0 0 0 0
......................................................AAGGGAACGATCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTGTGT.................................................................................................... 19 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGATGTGATAT................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGCTGTGAT................................................................................................... 20 1 1 3.00 3 2 0 0 1 0
................................................................................................TATCACAGTGTTTTTCCTTTAT....................................................... 22 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGGTTTTCCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTAATTTTCCTTTAT....................................................... 22 1 1 3.00 3 3 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATATG................................................................................................ 23 1 1 3.00 3 3 0 0 0 0
.................................TTTTTTCTGGGCCATTCGCTA....................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTCATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................ACAGGAACGATCGTTGTGAT................................................................................................... 20 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGATTTTTCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
.................................................................................................ATCACAGTGATCTTCCTTTAT....................................................... 21 1 1 3.00 3 3 0 0 0 0
.................................................................................................ATCACAGCGATTTTCCTTTAT....................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGATTTTCCTTTATG...................................................... 23 1 1 3.00 3 3 0 0 0 0
.................................................................................................CTCACAGTGATTTTCCTTTAT....................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TATTACAGTGATTTTCCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................AACGGAACGATCGTTGTGAT................................................................................................... 20 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTT.................................................................................................. 21 2 1 3.00 3 3 0 0 0 0
......................................................AATGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
.................................................................................................ATCACAGTGATTTTACTTTAT....................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATAT................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
......................................................ACAGGAACGATCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCTCAGTGATTTTCCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATTG................................................................................................. 22 2 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
................................................................................................TATCACAGTGATTTCCCTTTATA...................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................AAAGGAACGGTCGTTGTGATA.................................................................................................. 21 1 1 3.00 3 2 0 1 0 0
......................................................AAAGGAACGATCGTTGTGATC.................................................................................................. 21 1 1 3.00 3 2 0 0 1 0
..................................................................................................TATCAGTGATTTTCCTTTATA...................................................... 21 2 2 2.50 5 5 0 0 0 0
.........................................................GGAACGATCGTTGTGATATG................................................................................................ 20 0 1 2.00 2 0 1 0 1 0
......................................................AAAGGGACGATCGTTGTGATA.................................................................................................. 21 1 1 2.00 2 2 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATAA............................................................................................... 24 2 1 2.00 2 2 0 0 0 0
................................................................................................TATCACAGTGATTTTCATTTATAA..................................................... 24 2 1 2.00 2 2 0 0 0 0
.................................................................................................ATCACAGTGACTTTCCTTTAT....................................................... 21 1 1 2.00 2 2 0 0 0 0
......................................................AAAGGAACGATCGTTGTCATA.................................................................................................. 21 1 1 2.00 2 2 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGT................................................................................................... 20 1 1 2.00 2 2 0 0 0 0
................................................................................................TATCACAGTGCTTTTCCTTT......................................................... 20 1 1 2.00 2 2 0 0 0 0
......................................................AAAGGAACTATCTTTGTGATATG................................................................................................ 23 2 1 2.00 2 2 0 0 0 0
................................................................................................TATCACAGTGATTTTCCATTAT....................................................... 22 1 1 2.00 2 2 0 0 0 0

Anti-sense strand reads

TGTAGTTATCGTTTCAAGTTCAAAGTAGCAGCAAAAAAAGACCCGGTAAGCGATTTTCCTTGCTAGCAACACTATACGCAATCTAAGTGGCAATATATAGTGTCACTAAAAGGAAATATCGCGTACGTACAAGACAGGTTATATAGTTGTTATAGGTCGTTTCAAAAGTTCAC

****************************************..(((((((.((((((((((((.(((((((((((((((((..........)))...))))))))))))))))))))).))))).)))...))))*************************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 V117

male body
...............................................................................................TATAGTGTTGCTACAAGGAAA......................................................... 21 3 8 1.38 11 11 0
..................................................CGATTTTCCTTGCTAGCAACACTA................................................................................................... 24 0 1 1.00 1 1 0
.........................................................................GTATGCAATCGAAGTGGCAA................................................................................ 20 3 9 0.11 1 0 1
...............................................................................................TATAGTGTTTCTACAAGGAAA......................................................... 21 3 17 0.06 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004514:1651418-1651590 - dwi-mir-5 Known_mirbase AC--ATCAATAGC--------------------------------AAAGTTCAAGTTTCA--------------TCG---TCG--TTTTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATT-CACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTT--CTGTCCAATA--TATCAACAA--------------TATCC--A-------------------------------------GCAAAGTTT----------TCA-----AGTG
droVir3 scaffold_12875:4112413-4112612 + dvi-mir-5 Known_mirbase CT--GACCATATATA-TA---TCTGA---TATTCT-----------------------CGTATAC-----TAT---------A--T-ATAAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTCA-TT-AACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC--------AGCCCGTAAAGC---AACAC-CAC----------ATACG--A--------TCTATATCCATGTCTATATAGACTTAAAACTA-TATCG----------CCC-----AGTT
droMoj3 scaffold_6496:20936396-20936593 - dmo-mir-5 Known_mirbase AC--ATCTATGAAA-AGTTTTTATG--------------------AAAGTTCAAAATGCA--------------AAC---TCG--A---TGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTAA-TC-GACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A----GTCCCCCAGAC---TACAA-TATG---------AATGTGAA--------TATTTATAAGTGTATATATA--TTT--------ATTTC----------TCT-----AGTG
droGri2 scaffold_15112:2108466-2108652 - dgr-mir-5-1 Known_mirbase GT--GTATATAATA-T-TCC-------------------------TGAT-----------ATATG-----T-GTT-----A-A-AG-TCGTTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTCA-TTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----T--CTGCCCAAAACTC---AACTA-A-CCAGTGTTGAATAACT--AGTGAAGAGTGC----------------------------------TTACAGTGCTTC----------C
dp5 3:12677193-12677391 - dps-mir-5 Known_mirbase AC--ACCCACACCAA-CA---CCCACACCCACCCTCACATCCA------TCCCAGTGTCATTGAT-----TAGTTCC---C-A-AC-TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTAA-TT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGCCA---CACAT-GGG----------AAACGAAA--------CGCT--------------------------------CA----------G-C-----GGTG
droPer2 scaffold_2:8906281-8906479 + dpe-mir-5 Known_mirbase AC--ACCAACACCAA-CA---CCCATACCCACCCTCACATCCA------TCCCAGTGTCATTGAT-----TAGCTCC---C-A-AC-TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTAA-TT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGCCA---CACAT-GGG----------AAACGAAA--------CACT--------------------------------CA----------G-C-----GATG
droAna3 scaffold_13266:9731618-9731797 + dan-mir-5 Known_mirbase AT--TAACAAGA------------------------------AT-----TTCAAATGTGACTATTCGAAAA-AAAATGTAA-A-AT-ATTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTA-TC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGC----AG-TTGTCCAAAATGC---ATCAA-AAA----------TAACG--A---------GTT-----------------------------AGGTG----------ACA-------GG
droBip1 scf7180000396427:874595-874750 + AA--TTAAATAAA--------------------------------AA----------------AG-----T-GA--------A-AT-ATCCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTA-TC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CA-TTGTCCAAAATTC---ATCAG-AGA----------T---------------------------------------------CG-AGTTA----------GTGACTTGAAGG
droKik1 scf7180000302679:89056-89222 - AT--ATTCAGGATA-TGTCC-------------------------TAAA-----------CCAAG-----T-GATAT---CTCAAG-CTAACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTT-TC-C-CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----TC-AAGTCCAAGATTC---AACGA-TTG----------A--TC--------------------------------------------AGTTC----------TAA-----GGTT
droFic1 scf7180000454039:847759-847907 - A----------------------------------------------AG-----------TTTAG-----T-GATTC---CTA--A-AGTACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAT-TT-A---GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CG-TTGTCCAAAGCTC---ATCAA-AGG----------AAAAAACA--------TAC----------------------------------T----------TAA-----AGTT
droEle1 scf7180000491201:2013691-2013849 - CC--A-AT---A------------------------------CAAAAAG-----------TTGAG-----T-GAACC---CCG--C-TTACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGA-TC-C---TTAACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAAAACTC---ATCGATGGG----------AAATACAA------------------------------------TCCAA-----------------A-----AACA
droRho1 scf7180000780066:73906-74070 + TC--A-AT---A------------------------------AAACAAG-----------TTGAG-----T-GATCC---CTA--C-ATTTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGA-TC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAATACTC---ATCGA-GGG----------AAATAAGA------------------------------------TTCGAAATTA----------TCAGT-----TC
droBia1 scf7180000302143:3059518-3059677 - CC--A--T---A------------------------------AATCAAT-----------TTGAG-----T-GATCC---CCA--C-GTATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGT-TC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----ATGAAGCCCAAAGCTC---ATCAA-GGG----------AAATACCA------------------------------------TCCGAAATTA----------CC----------
droTak1 scf7180000415384:84303-84461 + CA--G--T---G------------------------------AATTAAG-----------TTGAG-----T-GATCC---CAG--C-ATAACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGT-TC-C---GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CTTAAGCCCCAAAAAC---ATCAA-GGG----------ATATACTA------------------------------------T------TAA----------CCA-----AGTA
droEug1 scf7180000409474:2397092-2397236 + A------------------------------------------GCCAAG-----------TTAAG-----T-GTTAC---CAA--A-ACTACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTCT-TT-T---GTTACATATCACAGTGATTTTCCTTTGTAACGCATGT----CTAATGCCCACTATTC---ATCAA-GGT----------TATTA-------------------------------------------------------------A-----ACTA
dm3 chr2R:15548610-15548775 - dme-mir-5 Known_mirbase TC--A-AG---A------------------------------AATTATG-----------TTAAG-----T-GATCC---CCA--A-ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGT-TT-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAACTC---ATCAA-GGA----------AAATGAAA------------------------------------GTCAAAGTTG----------GCAGC-----TT
droSim2 2r:16195883-16196046 - dsi-mir-5 Known_mirbase TC--A-AG---A------------------------------AATCAAG-----------TTAAG-----T-TATCA---CCA--A-ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGT-TC-C----CAACATATCACAGTGATTTTCCTTTATATCGCATGT----TAAAAGTCCACAATTC---ATCAA-GGA----------AAATGAAA------------------------------------GCCA-AGTTG----------GCAGC-----TT
droSec2 scaffold_1:13063341-13063499 - dse-mir-5 Known_mirbase AA-----------------------------------------ATCAAG-----------TTAAG-----T-GATCC---CCA--A-ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGT-TC-C---CGAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAATTC---ATCAA-GGA----------AAATTA-A------------------------------------GCCA-AGTTG----------GCAGC-----TT
droYak3 2R:13624014-13624186 + dya-mir-5 Known_mirbase GGTCA-AG---A------------------------------AATCGAG-----------TTAAG-----T-GTTCC---CCC--A-ATTTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAT-TC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----ACAAAGTCCACAACTC---ATCAA-GGG----------AAATGAAA------------------------------------GCCAAAGTCG----------GCATCTCACTAA
droEre2 scaffold_4845:9748860-9749027 - der-mir-5 Known_mirbase GT--TAGC---A------------------------------AATCCAG-----------TTAAG-----T-GATCC---CCT--A-ATTTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGT-TC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----AAAAAGTCCAAAACTC---ATCAATGGG----------AAATGAAA------------------------------------GCCAAAGTTG----------CCAGC-----TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AC--ATCAATAGC--------------------------------AAAGTTCAAGTTTCA--------------TCG---TCG--TTTTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATT-CACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTT--CTGTCCAATA--TATCAACAA--------------TATCC--A-------------------------------------GCAAAGTTT----------TCA-----AGTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................23151810.005181038332351336101
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................22123023.002302356158722698104
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................22111546.0011546019601130842
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................2314116.00411601150399110
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2112328.00232841100226413
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................2011803.0018038868166536
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................2111381.001381030013465
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................221408.0040801603911
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................231351.003511013490
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................241283.0028301002730
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241276.002761602690
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................241275.002750502700
........................................................................................TTTTCTGGGCCATTCGCTA................................................................................................................................................................................................191181.001810401770
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................201140.001400101390
......................................................................................................................................................TATCACAGTGATTTTCCT...................................................................................................................................181117.001170001161
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................23182.0082110800
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................22179.00790370420
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21175.0075020721
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................23162.0062010610
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................19149.0049100480
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................24148.0048000480
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................22147.0047001460
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................18146.0046010450
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................24144.0044010430
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................21131.00310150151
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................22130.0030000300
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................23127.0027000270
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25126.0026000260
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................18124.0024000240
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20122.0022010210
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................21120.0020020180
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA............................................................................................................................25119.0019000190
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................22114.0014000140
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................22114.0014000140
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................22113.0013010120
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................23113.0013000130
.......................................................................................TTTTTCTGGGCCATTCGCTA................................................................................................................................................................................................20113.0013000130
...........................................................................................................AAAGGAACGATCGTTGTGATATGAA.......................................................................................................................................................................25112.0012000120
........................................................................................................................................................TCACAGTGATTTTCCTTTATAT.............................................................................................................................22112.0012000120
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23111.0011000110
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................21110.001005050
......................................................................................................................................................TATCACAGTGATTTTCCTTTT................................................................................................................................21110.0010000100
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................1919.00900090
.......................................................................................................................................................ATCACAGTGATTTTCCTTT.................................................................................................................................1918.00800080
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................1917.00700070
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................2416.00600060
..................................................................................................................................CGTTAGATT-CACCGTTATA.....................................................................................................................................................1916.00600060
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................2116.00600060
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................1815.00501040
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAG.............................................................................................................................2415.00500050
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................2015.00520021
...........................................................................................................................................................CAGTGATTTTCCTTTATA..............................................................................................................................1815.00500050
......................................................................................................................................................TATCACAGTGATTTTCCTTTAA...............................................................................................................................2215.00502030
......................................................................................................................................................TATCACAGTGATTTTCCTTAT................................................................................................................................2115.00501040
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAT.............................................................................................................................2314.00400040
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................2014.00400040
...........................................................................................................AAAGGAACGATCGTTGTGATATGTA.......................................................................................................................................................................2514.00400040
...........................................................................................................AAAGGAACGATCGTTGTGATATGTC.......................................................................................................................................................................2514.00400040
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2313.00300030
...........................................................................................................AAAGGAACGATCGTTGTT..............................................................................................................................................................................1813.00300030
...........................................................................................................AAAGGAACGATCGTTGTGT.............................................................................................................................................................................1913.00300030
......................................................................................TTTTTTCTGGGCCATTCGCTA................................................................................................................................................................................................2113.00300030
......................................................................................................................................................TATCACAGTGATTTTCCTTTATG..............................................................................................................................2313.00300030
...........................................................................................................AAAGGAACGATCGTTGTGATTG..........................................................................................................................................................................2213.00300030
...........................................................................................................AAAGGAACGATCGTTGTGATC...........................................................................................................................................................................2113.00310020
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................2012.00211000
...........................................................................................................AAAGGAACGATCGTTGTGATATAA........................................................................................................................................................................2412.00200020
droVir3
CT--GACCATATATA-TA---TCTGA---TATTCT-----------------------CGTATAC-----TAT---------A--T-ATAAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTCA-TT-AACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC--------AGCCCGTAAAGC---AACAC-CAC----------ATACG--A--------TCTATATCCATGTCTATATAGACTTAAAACTA-TATCG----------CCC-----AGTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................23166177.006617729701213801360121122029101040251241043292641675411536188215704310102704298290939452967244945032170358719711171144510649120298932204764024104312426155914761861585499280327
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................22111567.0011567325653522350012011143104024643023141196041071963021921134131971283362382664222975734023183462591101269500211101010312332432512529816216389128
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2116493.00649323341737010000000400001000100110001061122017220016374252943973263004942765173462302811922109077120000302413273242313141343953
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................2014656.0046561135214900030620011000001000000010010002220152129282498819116320833136820730624417132183466130001615190011121748396671
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................2312561.00256100592200000000070000000020010011118401122474072520000224820262030162912121160002220900001532000000015111231
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2212463.00246302910290000000001732551141140103115442781871478800001148172013292145241726170001212341000151013340000003553421011
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................2411002.0010021102540000000001000000000000000000004111450020019123335376144805134383600012218000004911000220141118810
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................231460.00460000113000000000100000000000000000000137200000810101711310237686000121660000041400000043200
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................221295.00295000100000000000000000000000000000000000000006216710251432281525220007630000000000000001102
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................221282.00282000279000000000000000000000000000000010000000000000000000000020000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241257.00257200590000000000000000001000000000201361000005110106183141248800024600000541300000075946
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211173.001730018600000000011000000000000000001062479000001001102124100004120000000100000041110
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................241164.001640001700000000000000100100000000001101725291600000301111220111000370000020500000007513
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................221129.00129000460000000010000000000000010000305111719000002000110100000000140000000500000020000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................231129.00129000730000000000000000000000000100000000000002000033732430002530000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................231127.0012701032010000001000000000000000000000112200000516455311412200019160100000100000000000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................211105.001050001200000000000000000000000000000000140001414106246173140000230000000800000062211
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21197.0097000360000000000000000001000000000102132000006550320344110002150000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................19178.007802070000000000000000000000001000001100000104662152335431001340000010200000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................23177.0077020130000000000000000000000000000201252000002252411112211000730200001300000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................24175.007500057000000000100000000000000000000100300000001000002110000170000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................22157.005700056000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................AAAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................24145.004500000000000000000000000000000000000000000003508113152203000200000000000000000000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................22140.004000015000000000100000000000000000000233200000002102200200000110000001100000001000
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................20138.003812027000000000000000000000000000000000000000000001102001010200000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25134.00340003000000000000000000000000000000002000000012233321130000420000000000000011000
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................23131.00310002000000000000000000000000000000010000000202210130210000110000000800000021100
...........................................................................................................AAAGGAACGATCGTTGTGATATGTC.......................................................................................................................................................................25128.00280005000000000000000000000000000001000000000101002223110000360000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20125.002500011000000000000000001100010000000102300000000000000000000050000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATC...........................................................................................................................................................................21122.00220104000000000000000000000000000000000000000100220202001000520000000000000000000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................21117.00170005000000000000000000000000000020021000000000000000110000000000000300000020000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20116.00160016000000000000000000000000010010001100000000000000000000010000001000000001110
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................24116.00160001000000000000000000000000000010042300000001001010000000010000000000000000100
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.............................................................................................................................24113.00130006000000000000000000000000000000000000000000000111000000400000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAT.......................................................................................................................................................................25113.00130000000000000000000000000000000000000000000001001121210000200000000000000100100
...........................................................................................................AAAGGAACGATCGTTGTGATATGTCC......................................................................................................................................................................26112.00120000000000000000000000000000000000000000000000200002011000600000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA............................................................................................................................25112.00120003000000000000000000000000000000121100000000000000001000000000001000000002000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATCC.............................................................................................................................24112.00120016000000000000000000000000000000000000000000000001100000300000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGG.............................................................................................................................................................................19111.00110100000000000000000000000000000000000000000101100002010000400000000000000000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAC...............................................................................................................................21111.00110009000000000000000000000000000000101000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23110.00100003000000000000000000000000000000000000000011001110000000000000000000000000101
...........................................................................................................AAAGGAACGATCGTTG................................................................................................................................................................................16110.00100000000000000000000000000000000000000000000012011000011000300000000000000000000
.............................................................................................................AGGAACGATCGTTGTGATA...........................................................................................................................................................................19110.00100000000000000000000000000000000000000000000110100000103000010000010000000010000
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................19110.00100000000000000000000000000000000000013100000001000201100000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................2219.0090001000000000000000000000000000000000000000000100001000000310000000000000011000
........................................................................................TAAATTGGGTCATGCTCTA................................................................................................................................................................................................1919.0090000000000000000000000000000000000000000001120001000000000000000000100000020010
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................2118.0080001000000000000000000000000000000000000000001010010000000310000000000000000000
..........................................................................................................AAAAGGAACGATCGTTGTGAT............................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000001041100000100000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAA.......................................................................................................................................................................2518.0080000000000000000000000000000000000001000000000001010000000020000000000000011100
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................1918.0080002000000000000000000000000000000003100000000000000000000020000000000000000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................2318.0080000000000000100000000000000000000002200000010100000000000000000000000000001000
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................1818.0080003010000000000000000000000000000000100000000000000000000020000000100000000000
.............................................................................................................AGGAACGATCGTTGTGAT............................................................................................................................................................................1817.0070000000000000000000000000000000000100000001011001000000000000000000000000000101
..........................................................................................................AAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2217.0070000000000000000000000000000000000000000000001001112100000000000000000000000000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................2217.0070003000000000000000000000000000000000000000000000000000000010000000100000011000
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................2417.0070004000000000000000000000000000000000000000000000000011000100000000000000000000
..................................................................................................................................CGTTCA-TT-AACCGTTACA.....................................................................................................................................................1816.0060000000000000000000000000000000010111000000000000000000000020000000000000000000
..........................................................................................................AAAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2316.0060000000000000000000000000000000000000000000001201010001000000000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................2316.0060004000000000000000000000000000000000000000001000000000000100000000000000000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATC..............................................................................................................................2216.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................1816.0060000000000000100000000000000000000110000000000001000000000110000000000000000000
...............................................................................................................GAACGATCGTTGTGATATG.........................................................................................................................................................................1915.0050000000000000000000000000000000000001000000000000000000000100000000000000011010
...........................................................................................................AAAGGAACGATCGTTGTGATATTT........................................................................................................................................................................2415.0050002000000000000000000000000000000000000000000000000000000120000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................2115.0050002000000000000000000000000000000000000000000001001000000000000000000000010000
.............................................................................................................AGGAACGATCGTTGTGATATGT........................................................................................................................................................................2215.0050003000000000000000000000000000000000000000000010010000000000000000000000000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................2015.0050000000000000000000000000000000000010100000010001000010000000000000000000000000
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................2014.0040001000000000000000000000000000000000000000110000000000000000000000000000010000
.........................................................................................................................................................CACAGTGATTTTCCTTTATA..............................................................................................................................2014.0040002000000000000000000000000000000011000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTTC......................................................................................................................................................................2614.0040002000000000000000000000000000000000000000000000000000000200000000000000000000
droMoj3
AC--ATCTATGAAA-AGTTTTTATG--------------------AAAGTTCAAAATGCA--------------AAC---TCG--A---TGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTAA-TC-GACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A----GTCCCCCAGAC---TACAA-TATG---------AATGTGAA--------TATTTATAAGTGTATATATA--TTT--------ATTTC----------TCT-----AGTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................231103385.00103385208896689444411
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................22163878.006387823480521590461
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................22162994.006299462770316020410
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................23157007.00570076209100549100
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2117688.00768803760173110
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................2115487.00548712900051960
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................2214838.00483801060047320
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................2214143.004143030041400
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................2213555.0035550100035450
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................2311942.0019422240019160
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................2411743.0017430810016620
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................2011261.00126122270210228
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................2111095.0010951300010640
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................2311093.0010930811010110
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................2411051.0010511108009420
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................241829.00829097007284
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241578.00578038105390
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................231468.00468029004390
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAC...............................................................................................................................211292.0029200002920
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................211260.00260011002490
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................221256.0025614002510
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................241188.00188027001610
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................231177.0017705001720
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.............................................................................................................................241173.0017301001720
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................201173.00173016001570
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATC..............................................................................................................................221160.0016010001590
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................211142.0014200001420
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................181132.0013205700750
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................231130.00130013001170
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................201130.0013000001300
...........................................................................................................AAAGGAACGATCGTTGTGATATGTC.......................................................................................................................................................................251113.0011313200800
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................231110.0011005001050
.........................................................................................................................................................CACAGTGATTTTCCTTTAT...............................................................................................................................191108.0010801001070
.........................................................................................................................................................CACAGTGATTTTCCTTTATA..............................................................................................................................201103.0010300001030
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................201101.0010134000580
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................19195.009502700680
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................19181.00810210780
...........................................................................................................................................................CAGTGATTTTCCTTTATA..............................................................................................................................18179.00790000790
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................20179.00790300760
......................................................................................................................................................TATCACAGTGATTTTCCTTTATG..............................................................................................................................23153.00530100520
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................22152.00520300490
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25147.004702600210
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA............................................................................................................................25145.00450300420
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................22140.00400100390
......................................................................................................................................................TATCACAGTGATTTTCCTTTATCC.............................................................................................................................24136.00360000360
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................21133.00331000320
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATT..............................................................................................................................22130.00300000300
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAC.............................................................................................................................23129.00290000290
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAT.............................................................................................................................23128.00280300250
......................................................................................................................................................TATCACAGTGATTTTCCTTTAA...............................................................................................................................22128.00280000280
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23127.00270100260
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................24125.00250100240
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................19124.00240100230
............................................................................................................AAGGAACGATCGTTGTGATA...........................................................................................................................................................................20121.00210000210
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................21121.00211100190
.....................................................................................A---TGAATGGGCCATGCGCTA................................................................................................................................................................................................19121.00210500160
droGri2
GT--GTATATAATA-T-TCC-------------------------TGAT-----------ATATG-----T-GTT-----A-A-AG-TCGTTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTCA-TTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----T--CTGCCCAAAACTC---AACTA-A-CCAGTGTTGAATAACT--AGTGAAGAGTGC----------------------------------TTACAGTGCTTC----------CSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2325.001055
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2222.00440
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................2121.50330
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2221.50321
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................2320.50110
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................2020.50101
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................2120.50101
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................2420.50101
dp5
AC--ACCCACACCAA-CA---CCCACACCCACCCTCACATCCA------TCCCAGTGTCATTGAT-----TAGTTCC---C-A-AC-TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTAA-TT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGCCA---CACAT-GGG----------AAACGAAA--------CGCT--------------------------------CA----------G-C-----GGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................23120861.00208612264210780287312423808
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................22111323.0011323041978584304100010
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................23110758.0010758041884614187200030
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2217060.00706017084499201796050238
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2111461.0014610928840454000292
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................221783.00783055589113800000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................221780.00780007770300000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211762.00762041524019600001
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................221640.00640016342300000
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................201598.005982262740265170149
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................241570.0057008938319500020
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................221268.002680236250300040
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................241260.0026001615808500010
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................231224.0022411012318800010
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................211202.0020201415313200020
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................241139.001390012201700000
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241113.001130177002500010
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................231107.00107018001801070
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................21182.008207650100000
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................22178.0078024303300000
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................20164.006400640000000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20160.006002805000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAC...............................................................................................................................21160.006000590100000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................21159.0059054101300000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................19142.0042022101300033
........................................................................................TCCTAGGGGCCATACGCTA................................................................................................................................................................................................19140.004004403200000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................18138.003800203600000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.............................................................................................................................24137.003700370000000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................23136.0036002101500000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20135.0035041601500000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................22131.0031021701200000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................21130.003002370000000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23129.002902180900000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................23128.002803170800000
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................23126.0026021101300000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................19126.002600402200000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................24124.0024021101100000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................23121.002100180300000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................20117.001704130000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................23115.001501101300000
.......................................................................................TTCCTAGGGGCCATACGCTA................................................................................................................................................................................................20115.001500101400000
............................................................................................................AAGGAACGATCGTTGTGATA...........................................................................................................................................................................20114.001401130000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25114.00140040800020
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................22112.00120150300030
............................................................................................................AAGGAACGATCGTTGTGATATGT........................................................................................................................................................................23111.00110920000000
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................20110.00100820000000
.........................................................................................................TAAAAGGAACGATCGTTGTGAC............................................................................................................................................................................22110.001000100000000
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................21110.00100160300000
..........................................................................................................AAAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2319.0090450000000
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................1919.0090070200000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA............................................................................................................................2519.0090270000000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAGC............................................................................................................................2318.0080050300000
......................................................................................................................................................TATCACAGTGATTTTCCT...................................................................................................................................1818.0080030500000
................................................................................................................................TGCGTTAA-TT-CACCGTTACATA...................................................................................................................................................2217.0070030400000
...........................................................................................................................................................CAGTGATTTTCCTTTATA..............................................................................................................................1817.0070060100000
.........................................................................................................................................................CACAGTGATTTTCCTTTAT...............................................................................................................................1917.0070300400000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATG..............................................................................................................................2317.0070050200000
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................1816.0060110400000
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................2016.0060420000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAA...............................................................................................................................2216.0060040200000
.........................................................................................................................................................CACAGTGATTTTCCTTTATA..............................................................................................................................2016.0060050100000
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................2115.0050040100000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTC.......................................................................................................................................................................2515.0050120100010
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................2415.0050140000000
...........................................................................................................AAAGGAACGATCGTTGTGATATTT........................................................................................................................................................................2415.0050020300000
droPer2
AC--ACCAACACCAA-CA---CCCATACCCACCCTCACATCCA------TCCCAGTGTCATTGAT-----TAGCTCC---C-A-AC-TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTAA-TT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGCCA---CACAT-GGG----------AAACGAAA--------CACT--------------------------------CA----------G-C-----GATGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2217491.00749169693540826611
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2316462.006462464568164528517
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2116180.0061806099371133
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................2013284.00328431951613222
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................221721.007212247648121
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................241371.00371347418020
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................231353.00353641306000
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................221164.0016416003010
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241161.0016115506000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................191125.0012511608001
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................22170.00706811000
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................20167.00676700000
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................24163.00636300000
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................23158.005842013012
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23151.00515001000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................21146.00463340000
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................23142.00423704010
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................24139.00393602010
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................22127.00270522000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................22127.00272142000
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................21124.00242400000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................22123.00232300000
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................23121.00211505010
...........................................................................................................AAAGGAACGATCGTTGTGG.............................................................................................................................................................................19120.00202000000
...........................................................................................................AAAGGAACGATCGTTGTGATAG..........................................................................................................................................................................22120.00202000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21116.0016448000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25116.00161501000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20115.00150015000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................24111.0011037010
...........................................................................................................AAAGGAACGATCGTTGTGAG............................................................................................................................................................................20111.00111100000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................23110.0010901000
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................2019.009900000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................2119.009801000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................1819.009009000
...............................................................................................................GAACGATCGTTGTGATAT..........................................................................................................................................................................1819.009900000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................2018.008026000
.............................................................................................................AGGAACGATCGTTGTGAT............................................................................................................................................................................1818.008800000
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................2018.008800000
........................................................................................TCCTAGGGGCCATACGCTA................................................................................................................................................................................................1917.007007000
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2116.006330000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................1916.006006000
............................................................................................................AAGGAACGATCGTTGTGATA...........................................................................................................................................................................2016.006600000
..........................................................................................................AAAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2316.006501000
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................1815.005410000
.........................................................................................................TAAAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................2415.005500000
..........................................................................................................AAAAGGAACGATCGTTGTGAT............................................................................................................................................................................2115.005500000
..............................................................................................................GGAACGATCGTTGTGATAT..........................................................................................................................................................................1914.004400000
..........................................................................................................AAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2214.004301000
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................2113.003200001
.............................................................................................................AGGAACGATCGTTGTGATA...........................................................................................................................................................................1913.003300000
.........................................................................................................TAAAAGGAACGATCGTTGTGA.............................................................................................................................................................................2113.003201000
...........................................................................................................AAAGGAACGATCGTTGTGATATAA........................................................................................................................................................................2413.003300000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................2312.002002000
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................1912.002002000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAAA......................................................................................................................................................................2612.002200000
............................................................................................................AAGGAACGATCGTTGTGATATGG........................................................................................................................................................................2312.002200000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAT.............................................................................................................................2212.002002000
..............................................................................................................GGAACGATCGTTGTGATA...........................................................................................................................................................................1812.002200000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAG.............................................................................................................................2412.002011000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................2312.002011000
.............................................................................................................AGGAACGATCGTTGTGATATC.........................................................................................................................................................................2112.002200000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................2412.002011000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................2112.002002000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAT.......................................................................................................................................................................2512.002200000
...........................................................................................................AAAGGAACGATCGTTGTGATACT.........................................................................................................................................................................2312.002200000
............................................................................................................AAGGAACGATCGTTGTGAT............................................................................................................................................................................1912.002200000
.......................................................................................................................................................ATCACAGTGATTTTCCTTT.................................................................................................................................1911.001001000
...........................................................................................................AAAGGAACGATCGTTGTGATC...........................................................................................................................................................................2111.001100000
droAna3
AT--TAACAAGA------------------------------AT-----TTCAAATGTGACTATTCGAAAA-AAAATGTAA-A-AT-ATTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTA-TC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGC----AG-TTGTCCAAAATGC---ATCAA-AAA----------TAACG--A---------GTT-----------------------------AGGTG----------ACA-------GGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2313433.0034331402558681212013
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2211891.001891331648199128
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2211454.00145431114125271013
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................231721.007214059387001
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................211243.00243221720031
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................201154.001542105264116
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211147.00147512813001
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................221117.0011701170000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................221110.0011001100000
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21164.00640613000
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................23164.006412139003
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................24164.00642556100
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................22154.00546435000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20123.0023299003
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................24123.00230194000
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................24119.00190190000
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................24117.00170133010
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................20116.00160160000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................22113.00131030000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAC...............................................................................................................................21110.00100100000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................1919.009072000
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................2318.008071000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................2517.007043000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................2117.007160000
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2117.007430000
........................................................................................TTCTAAGGACCATTCGCTA................................................................................................................................................................................................1916.006051000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................2316.006060000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................2016.006060000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................2315.005041000
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................1815.005031001
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................2115.005230000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................1914.004031000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................2314.004040000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAA...............................................................................................................................2214.004040000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................2314.004040000
.........................................................................................................................................................CACAGTGATTTTCCTTTAT...............................................................................................................................1914.004040000
......................................................................................................................................................TATCACAGTGATTTTCCTTC.................................................................................................................................2013.003030000
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................1913.003012000
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................2013.003030000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................2313.003021000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................2413.003030000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATG..............................................................................................................................2312.002020000
.........................................................................................................................................................CACAGTGATTTTCCTTTATA..............................................................................................................................2012.002020000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.............................................................................................................................2412.002020000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTTA......................................................................................................................................................................2612.002002000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................2012.002011000
...........................................................................................................AAAGGAACGATCGTTGTGATATTA........................................................................................................................................................................2412.002002000
...........................................................................................................AAAGGAACGATCGTTGTGATAG..........................................................................................................................................................................2212.002002000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................2212.002020000
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................1812.002002000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAT.......................................................................................................................................................................2512.002000002
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................2212.002011000
.......................................................................................................................................................ATCACAGTGATTTTCCTTT.................................................................................................................................1912.002110000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................2212.002020000
......................................................................................................................................................TATCACAGTGATTTTCCTTTGC...............................................................................................................................2211.001010000
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................2111.001000100
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATATT............................................................................................................................2411.001010000
.....................................................................................T-ATTCTAAGGACCATTCGCTA................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATT..............................................................................................................................2211.001010000
......................................................................................................................................................TATCACAGTGATTTTCCTTTC................................................................................................................................2111.001001000
droBip1
AA--TTAAATAAA--------------------------------AA----------------AG-----T-GA--------A-AT-ATCCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTA-TC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CA-TTGTCCAAAATTC---ATCAG-AGA----------T---------------------------------------------CG-AGTTA----------GTGACTTGAAGGSizeHit CountTotal NormTotal
No Reads
droKik1
AT--ATTCAGGATA-TGTCC-------------------------TAAA-----------CCAAG-----T-GATAT---CTCAAG-CTAACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTT-TC-C-CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----TC-AAGTCCAAGATTC---AACGA-TTG----------A--TC--------------------------------------------AGTTC----------TAA-----GGTTSizeHit CountTotal NormTotal
No Reads
droFic1
A----------------------------------------------AG-----------TTTAG-----T-GATTC---CTA--A-AGTACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAT-TT-A---GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CG-TTGTCCAAAGCTC---ATCAA-AGG----------AAAAAACA--------TAC----------------------------------T----------TAA-----AGTTSizeHit CountTotal NormTotal
No Reads
droEle1
CC--A-AT---A------------------------------CAAAAAG-----------TTGAG-----T-GAACC---CCG--C-TTACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGA-TC-C---TTAACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAAAACTC---ATCGATGGG----------AAATACAA------------------------------------TCCAA-----------------A-----AACASizeHit CountTotal NormTotal
No Reads
droRho1
TC--A-AT---A------------------------------AAACAAG-----------TTGAG-----T-GATCC---CTA--C-ATTTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGA-TC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAATACTC---ATCGA-GGG----------AAATAAGA------------------------------------TTCGAAATTA----------TCAGT-----TCSizeHit CountTotal NormTotal
No Reads
droBia1
CC--A--T---A------------------------------AATCAAT-----------TTGAG-----T-GATCC---CCA--C-GTATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGT-TC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----ATGAAGCCCAAAGCTC---ATCAA-GGG----------AAATACCA------------------------------------TCCGAAATTA----------CC----------SizeHit CountTotal NormTotal
No Reads
droTak1
CA--G--T---G------------------------------AATTAAG-----------TTGAG-----T-GATCC---CAG--C-ATAACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGT-TC-C---GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CTTAAGCCCCAAAAAC---ATCAA-GGG----------ATATACTA------------------------------------T------TAA----------CCA-----AGTASizeHit CountTotal NormTotal
No Reads
droEug1
A------------------------------------------GCCAAG-----------TTAAG-----T-GTTAC---CAA--A-ACTACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTCT-TT-T---GTTACATATCACAGTGATTTTCCTTTGTAACGCATGT----CTAATGCCCACTATTC---ATCAA-GGT----------TATTA-------------------------------------------------------------A-----ACTASizeHit CountTotal NormTotal
No Reads
dm3
TC--A-AG---A------------------------------AATTATG-----------TTAAG-----T-GATCC---CCA--A-ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGT-TT-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAACTC---ATCAA-GGA----------AAATGAAA------------------------------------GTCAAAGTTG----------GCAGC-----TTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2311000024.0010000240000901821884576116301200000040800820100000160193341410313501291331312123283000000000000000000000000310002855254128050921826560333216124120292013211110140114164381100298013111308391201099320100000000317008361651676532916740257211326171960291844303132101170961026570110091106193161172122042757710201068411285361256823090001626134323717341362717439223715962172162713000002114310650822047323056732361729321051383712937514337201744291892317691515232238192625671914625156684134716100361322331910751721781201532184255710251163817812521113750724101643111010240
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................221136122.001361220000315486131818440100000000250023010000010260311018160215434010460270000000000000000000001533014815163157326372793224694121511632119385701311313013500015742061680032000110010000000003200394198921522265396804151118471132010120060021440111024110516225615002207317411000106980310415912522400036201017208122315523134361563139114534652283000044243866322250215214010055801140520547304643522243322164101277101371110118864342137322613504124215441183334523424716910822278146110136123681264828107316111660
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................23147228.004722800002052527178241000000000000001020051101390000000000000002110003000000000000000000010111123512521450726201220810411310400933859031820631091119548845030350003510000700000000000243658749103356300010000000000000000153809429130503015100010310001000000000000000000000510000396512120183961788150110000028718910000000006001021910000000000101001000301100001010146811741140030100001632101010000100002028381101100
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................22117174.00171740000207951181031110000000001000100000001900000002071000100100012000000000000000000431401898770160622711773267760316024722632111711038572041001334423502000011404066000000000010941389921014000000570000000000000153201620816012061152024005901020000000000000000000000001002880215082439626160214000054442602110021026101121400010000000411071402166900203212531649291040130000012420160200002010040910140212220
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................21113538.0013538000000440323900100000000020010000000010160100012301000100300000100000000000000000000100040613918776144002030021001153640052105000121400340000000000000010000000009445885112922130111100305100050010039011000110220001001330110000020013050730000001110102111012650463271019000090551702000000201000026100001211123112118062101421134334332573757329138011204122226418220414030080948370412150
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................20111581.0011581000000000200000000000000001000000086480000000108000002000000000000000000000000001100422016000001000100010000000000002200000000000000000001000000464144381012000032000000003001000202000010000040031012001000000114050500000100096623283512070121700150000146133002200011020301313020003000004000219041100523212213542011614113110024355361072085458714347211103225986731259440
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................2316896.006896000000052000000000000000000000000030001011102010000000000000000000000000000000000885123345641210001000100100000000230106009000000000000000000000000117836878104520011000000000010000010000000010000000121100010000000011003000000000002000100050382020000268811000000000000001110010000010202001020100001000011204318101201010020102020004010050100200780301000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................2213934.003934000000844174000000000000000000000000400000000000000000000000000000000000000000000009124212142341940012040000013011000122300005940470000000030000000000000001754506012000000000000000000000613000101110000000000500000000002000000000000000000002309041090000000003619000000000000000150000000000000000000000100000000112302611000000000050000000000000000101060000100
........................................................................................TTCATCGGGCCATTCGCTA................................................................................................................................................................................................1912959.0029590000000000000000000000000000000000420000000000000000000000000000000000000000000000300132141239201000200200201010000044653004721158000000000000000000000000242209488136230000000000000000000000000000000100100000000000000001000000000000000000000000001010000000037220000001000000000100000000000000000000000000000001560200000000000000000000001000000000010000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................2112939.00293900000032014600000000000000000000000090000000000000000000001010000000000000000000000546151331425610001000340072310010062110068100420000000000000000000000001757108356100000000000000000000050210211101050000008000100000000000000000000000000011306237064000100005461000000000010000010000000001000001700030000000100057611000000020000000000001010000000000400000100
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................2312237.0022370000004840000000000000000000000000000000000010000000000000000000000000000000000001075047000000000000000020000000002003000000000000000000000000261771995681010000010000000000000001000000000000000010001000000000000000000001000000000004020000000037260000000000000000100000000000000024000101000000001135812100000210000000000001001010000000520000010
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................2411676.001676000000167000000000000000000000000010000000001000000000000000000000000000000000000371987851001000000002000000000000014107000000000010000000000000413252101000000000000000000000000000000000000000001000000001807000300000000000001010102604000000003935000000000000000010000000000000000014240201000000084033700000100000001021010110130000003060001000
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................2411627.001627000000058100000000000000000000000010000000000100000000000000000000000000000000000631168772000010000001001200000100011401000010000000000000000000732451602000000000000000001000000001100000100000020000000000008010200000000000100040314412810105000055450000100000000000200000000000100022001504001000101755235001001000100020100130200000002049120000000
..........................................................................................................AAAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2411316.001316000020416974000000000000000000000000000000000000000000000000000000000000000000000004651111561757000000000400010040000617000502029000000000000000000000000073000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000027000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................2311250.0012500000001819544130000000000000000000000003000000000100000000000000000000000000000000000011348252630000000000000000000018600010101200100000000000000000000011768012000000000000000000000000000000000000000000001000000000000000000000000000000000030600000000191301001000000000000000000000000000030001010000000014204900001101000000023000000010000102210000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................2411108.001108000000041030100000000000000000000002000000000000010000000100000000000000000000000010658159104221000010010041100001018000427080000000000000000000000001248512410000000000000000000000000000000000000000000000000000000000200000000000000120703123500000000141100000000000000002000000000000000000001000000000003071000000000000000000000000000000000000000000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2211009.0010090000005361110000000000000000000000001000000000000000000000000000000000000000000000033838821022700000100000000000000870002610100000000000000000000000003442921700000000000000000000000000000000000000000000000000000000000000000000002000021019150000000010900000000001000000000000000000000000000000000000001421500000000000000000000000000000000130000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................241768.007680000000000000000000000000000000000400000000000000000000000000000000000000000000001705410000000000010000000000000200000000000000000000000000014567018000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000301600000000000000001000000000000000010000000000010004467300100000000000000000000000000000130100000
..........................................................................................................AAAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................231678.00678000000139520000000000000000000000000000000000000000000000000000000000000000000000026651105117130000000100011040000112000203027000000000000000000000000011000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000011000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................231647.0064700000001100000000000000000000000000000000000100000000000000000000000000000000000090861000000000000000000000000020000000000000000000000000003674772461000000000000000000000000000000000000000000000000000000000200000000000000000101020001000013700000000000000001000000000000001000000000000000003263900000000000000000000010001000000130000000
.......................................................................................ATTCATCGGGCCATTCGCTA................................................................................................................................................................................................201592.00592000010110000000000000000000000000024000000000000000000000000000000000000000000000031009000010000000000000000100000000000000000000000000000002891138321100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000220000000000000000000000000000000000000000000000000242000000000000000002000000000000000010000000
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................221531.0053100000011071000000000000000000000000020000000000000000010000000000000000000000000000441123161000001000001000100000000040040000000000000000000000001030252200001000000000010000000000000000010000000000000000000000000000000000010010110010010030000111400000000000000000000000000000000000100020100000002404000000000000000100000011000000000100000000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................191512.00512000000000000000000000000000000000021000000000010000000000000000000000000000000000006000000000000000000100000000000001000000000000000000000000313170050000000000000030000001000000000100000000100000000000000000000000000000000000030110000000261500000000000000000000000000000001010011000200010126810400100000000111010108000000000400120000000
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................211401.00401000000186400000000000000000000000020000000000000000000000000000000000000000000000138136468170000000000011020000023000203040000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000102014030000000010000000000000000000000000000000000000000000001000016300000000000000000000000000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................211354.003540000001313000000000000000000100000300000000000000000000000000000000000000000010004527263250000100000021000000004000231040000000010100000000000001083800000000000000000000000000100011100000001010000000000000000000000000000010040009021110100001013100000000000000010000010000000000000000000100100052800000000000040000100000000000000200000000
........................................................................................TTCATCGGGCCATTCGCTAC...............................................................................................................................................................................................201345.0034500000000000000000000000000000000003450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................181290.0029000000000000000000000000000000000000000000000100000000000000000000000000000000000010003000000000000000000000000000000000000000000001030000002721280220000000000000000000000000000000100000000000000000000000000000000000000000000000000000000191200000000000000000000000000001000000000000000000001243600000000000211000000000000001000101100000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................211284.002840000000300000000000000000000000000000000000000000000000000000000000000000000000009131472260000000000000200000004000160013000000000000000000000000011700000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000020000000000000000000000000000000034000000000000000000000000000000000000000000
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................231237.00237000000011000000000000000000000000010000000000000000000000000000000000000000000000472081210000000000000000000000000110000000000000000000000000008910800000000000000000000000000000000000000000000000000000000000000000000000000000000030000000064000000000000000000000000000000000000000000000000084300000000000000000000000000000000000000000
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................181163.001630000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000131150000000000000000000000000000000000000000000000000000000050200000000000000000000000000000000650000000000000000000000000000000000000001000000000105900000000000000000000000000000000000000000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................191154.001540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129242300000000000000000000000100000000000000000000000000000000000000000000000000000001030000000032000000000000000010000000000000000000000000000000065100000000000000000000000000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................231151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000200340000000000000000000000000001010000000000000000000000000201100000000000000000000001000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000104200000000000000000000000000000000000000000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................211148.0014800000002000000000000000000000000000000000000000000000000000000000000000000000000048226121200000000000000000000020004004000000000000000000001000301020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000019500000000000000000000000000000000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................201145.0014500000000110000000000000000000000004700000000030000010000000000000000000000000000004224000000000000000000000000001300010000000000020000000000112000000000000000000000000202000000000100000010000000000000000000000000000000090005040001000055001000005000000120000000010000000000000001010000012700000000000000000000000000000200000000010
...............................................................................................................GAACGATCGTTGTGATATG.........................................................................................................................................................................191133.0013300000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000010000000000000000000000000006965000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000105000000000000000000000000000000001000000000000000077700000000000000000000000000000000000000000
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................221127.00127000000001000000000000000000000000000000000000000000000000000000000000000000000000407200000000000000000000000000210700000000000000000000000010220400000000000000000000000000000000000000010000000000000000000000000000000000100000000000000860000000000000000000000000000000000000000000000000312700000000000000000000000010000001540000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................231125.001250000000102000000000000000000000000100000000000000000000000000000000000000000000001772613700000000000000000000000001008000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000005080000000011000000000000000000000000000000000000000000000000025000000000000000000000000000000000000000000
........................................................................................TTCATCGGGCCATTCGCTACTG.............................................................................................................................................................................................221117.0011700000000000000000000000000000000001170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................221108.00108000000522109000000000000000000000000000000000000000000000000000000000000000000000009143100000000000001010000010000100000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000001000000000002012001000033000000000000000000000000000000000000000000000000016500000001000000000000010000000100000000000
.....................................................................................................................................................ATATCACAGTGATTTTCCTTTATA..............................................................................................................................241107.001070000000010000000000000000000000000000000000000000000000000000000000000000000000003041511200000000000000000000100001001000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................181100.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317317400000000000000000000000000000010000000000000000000000000000000000000000000001010300000000470000000000000000000000000000100000000000000000000101000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGATC......................................................................................................................................................................26194.009400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AAAGGAACGATCGTTGTGATC...........................................................................................................................................................................21176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000342000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000120000000000000000000000000000000000000000000000000362000000000000000000000000000000000000000000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20176.0076000000001000000000000000000000000000000000000000000000000000000000000000000000000210721301000000000000000000020001010000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
droSim2
TC--A-AG---A------------------------------AATCAAG-----------TTAAG-----T-TATCA---CCA--A-ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGT-TC-C----CAACATATCACAGTGATTTTCCTTTATATCGCATGT----TAAAAGTCCACAATTC---ATCAA-GGA----------AAATGAAA------------------------------------GCCA-AGTTG----------GCAGC-----TTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................231153742.001537429463548381180010874145074440006315824125397001
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................221122204.00122204876453472531332012331001341923219911406957320
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................21136713.00367131053228658501132193673382332396103004
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................20110151.0010151198418774301874443142318336002
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................2314563.00456300714317418150214390145100000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2213927.00392700754117307186970237705030
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................2411342.001342108801002219723202403000
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................2411338.001338139561002013221402603000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................221927.0092700340240327463012400000
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................221851.00851118030000021190204000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211808.0080800861300252228030910000
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................231712.007120032600033152126040062000
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................241347.003470134500000010000000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................191321.0032181209005303137311013000
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................201278.002786027100000000100000
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................231247.00247009900000626911600000
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................241222.00222001130003155390902000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................231218.0021800960002050490849000
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................221217.00217001620003022240600000
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................231182.0018200690001149620000000
...........................................................................................................AAAGGAACGATCGTTGTGATAG..........................................................................................................................................................................221180.001801017600000010101000
........................................................................................TTCATCGGGCCATTCGCTA................................................................................................................................................................................................191159.001590114900010010700000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................241152.00152001010020344006500000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................221121.00121128100010101101113000
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................211116.001160010700010160100000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................231111.001110095000001130200000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................22193.0093003314000031140100000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20179.007900000010201704100000
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................21170.0070002512000015170100000
...........................................................................................................AAAGGAACGATCGTTGTGG.............................................................................................................................................................................19169.0069006800000100000000
............................................................................................................................................................AGTGATTTTCCTTTATA..............................................................................................................................17167.00670000000049180000000
...........................................................................................................AAAGGAACGATCGTTGTGAG............................................................................................................................................................................20165.0065006500000000000000
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................18156.0056004100000681000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21147.0047004103103403001000
...........................................................................................................AAAGGAACGATCGTTGTGATATTT........................................................................................................................................................................24133.0033000000101100030000
...............................................................................................................GAACGATCGTTGTGATAT..........................................................................................................................................................................18129.0029002400000140000000
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................19129.0029000012003210200000
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................18126.00260020010011110100000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAA.......................................................................................................................................................................25126.0026001300000670000000
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................20125.0025001610000350000000
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................20123.002300810000680000000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................21123.002300900000770000000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................21121.002100200100750600000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................19120.0020000000000301700000
..........................................................................................................AAAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................23119.0019001100000530000000
...............................................................................................................GAACGATCGTTGTGATATG.........................................................................................................................................................................19119.001900600000480100000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................18118.0018000000000001800000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25118.0018001400000010300000
..............................................................................................................GGAACGATCGTTGTGATAT..........................................................................................................................................................................19116.0016001200000220000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAT.......................................................................................................................................................................25115.0015001300000000101000
............................................................................................................AAGGAACGATCGTTGTGATA...........................................................................................................................................................................20114.0014001200000110000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................23114.001400100001450300000
...........................................................................................................AAAGGAACGATCGTT.................................................................................................................................................................................15114.001400000001670000000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20113.001300000000240700000
...........................................................................................................AAAGGAACGATCGTTGTGATAAA.........................................................................................................................................................................23112.001202400000310002000
......................................................................................................................................................TATCACAGTGATTTTCCT...................................................................................................................................18111.001100000300110600000
................................................................................................................AACGATCGTTGTGATAT..........................................................................................................................................................................17111.001100000000362000000
.............................................................................................................AGGAACGATCGTTGTGAT............................................................................................................................................................................18111.0011001100000000000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA............................................................................................................................25110.001000110000220400000
............................................................................................................AAGGAACGATCGTTGTGAT............................................................................................................................................................................19110.001000900000000100000
...........................................................................................................AAAGGAACGATCGTTG................................................................................................................................................................................16110.001000000000451000000
...........................................................................................................................................................CAGTGATTTTCCTTTATA..............................................................................................................................1819.00900000000270000000
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................2119.00900700000010001000
.............................................................................................................................................................GTGATTTTCCTTTATA..............................................................................................................................1618.00800000000620000000
..............................................................................................................GGAACGATCGTTGTGATA...........................................................................................................................................................................1818.00800300000140000000
............................................................................................................................................................AGTGATTTTCCTTTAT...............................................................................................................................1618.00800000000800000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................2317.00700000000100600000
.............................................................................................................AGGAACGATCGTTGTGATA...........................................................................................................................................................................1917.00700600000010000000
..........................................................................................................AAAAGGAACGATCGTTGTGAT............................................................................................................................................................................2117.00700600000010000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................2316.00600000000100500000
.......................................................................................ATTCATCGGGCCATTCGCTA................................................................................................................................................................................................2016.00600600000000000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................2016.00600010100010300000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................2216.00600000000320100000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................2416.00600000000110400000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTC.......................................................................................................................................................................2515.00500400000010000000
droSec2
AA-----------------------------------------ATCAAG-----------TTAAG-----T-GATCC---CCA--A-ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGT-TC-C---CGAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAATTC---ATCAA-GGA----------AAATTA-A------------------------------------GCCA-AGTTG----------GCAGC-----TTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................23128672.00286723921527808457
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2217289.00728995226980192
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2211700.001700861159419
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................2111183.0011839211666
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................201899.008992487419
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................231631.00631184042324
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................221177.001774401330
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211174.001741501581
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................241139.00139301351
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241109.00109201070
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................23197.009711923
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................22175.0075280443
.........................................................................................................TAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................22166.006600660
........................................................................................TTCATCGGGCCATTCGCTA................................................................................................................................................................................................19166.006650547
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................24157.005700561
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................21143.004370351
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................23140.004010381
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................24134.003460280
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................19131.003110300
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................23131.003100310
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................18127.002700270
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20127.002720241
......................................................................................................................................................TATCACAGTGATTTTCCT...................................................................................................................................18126.002600251
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21123.002320210
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................22122.002200220
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25116.001601150
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................18113.001300130
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20110.001000100
.........................................................................................................TAAAAGGAACGATCGTTGTGATA...........................................................................................................................................................................23110.001000100
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................2118.0080080
............................................................................................................AAGGAACGATCGTTGTGATA...........................................................................................................................................................................2017.0071060
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................2316.0060060
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................2116.0064020
...........................................................................................................AAAGGAACGATCGTTGTGATATGAA.......................................................................................................................................................................2515.0050050
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................1915.0050050
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................2114.0043010
.......................................................................................ATTCATCGGGCCATTCGCTA................................................................................................................................................................................................2014.0040040
...............................................................................................................GAACGATCGTTGTGATATG.........................................................................................................................................................................1914.0040040
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................2213.0030030
...............................................................................................................GAACGATCGTTGTGATAT..........................................................................................................................................................................1813.0030030
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................2313.0030030
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................1813.0030030
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................2113.0030030
...........................................................................................................AAAGGAACGATCGTTGTGATATGGT.......................................................................................................................................................................2512.0020020
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................2012.0021010
.........................................................................................................TAAAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2412.0020011
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................2412.0020020
...........................................................................................................AAAGGAACGATCGTTGTGATATGTA.......................................................................................................................................................................2512.0020020
..........................................................................................................AAAAGGAACGATCGTTGTGAT............................................................................................................................................................................2112.0020020
.........................................................................................................TAAAAGGAACGATCGTTGTGA.............................................................................................................................................................................2112.0020020
...........................................................................................................AAAGGAACGATCGTTGTGATAG..........................................................................................................................................................................2212.0020020
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................2412.0020020
...........................................................................................................AAAGGAACGATCGTTGTGATATGAT.......................................................................................................................................................................2512.0020011
...........................................................................................................AAAGGAACGATCGTTGTGATATTTT.......................................................................................................................................................................2511.0010010
.......................................................................................................................................................ATCACAGTGATTTTCCTT..................................................................................................................................1811.0010010
..................................................................................A--A-ATTCATCGGGCCATTCGCTA................................................................................................................................................................................................2211.0010010
...........................................................................................................AAAGGAACGATCGTTGTTC.............................................................................................................................................................................1911.0010010
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAG.............................................................................................................................2311.0010010
............................................................................................................................................................AGTGATTTTCCTTTATAA.............................................................................................................................1811.0010010
......................................................................................................................................................TATCACAGTGATTTTCCTTATA...............................................................................................................................2221.0020020
...........................................................................................................AAAGGAACGATCGTTGTGATACT.........................................................................................................................................................................2311.0010010
........................................................................................................CTAAAAGGAACGATCGTTGTGAT............................................................................................................................................................................2311.0010010
...........................................................................................................AAAGGAACGATCGTTGTGATATTT........................................................................................................................................................................2411.0010010
...........................................................................................................AAAGGAACGATCGTTGTGT.............................................................................................................................................................................1911.0010010
droYak3
GGTCA-AG---A------------------------------AATCGAG-----------TTAAG-----T-GTTCC---CCC--A-ATTTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAT-TC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----ACAAAGTCCACAACTC---ATCAA-GGG----------AAATGAAA------------------------------------GCCAAAGTCG----------GCATCTCACTAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................231203258.0020325828641926911043572652000
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................22176864.00768642831739572786425951180
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................21110780.0010780215104113361101040
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................2215615.00561500561140000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2213667.003667032191217230000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................2313427.003427013198614280000000
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................2012567.00256736223301940130010
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................2311430.001430001370600000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................2411377.001377201346280100000
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................241748.0074800729180100000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211505.00505013271770000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................221481.00481033671110000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................241426.0042600407190000000
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................201396.003964039200000000
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................231325.0032500311140000000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................231246.0024600235110000000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................221193.001930718510000000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................191153.001534013990001000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................221116.001160011330000000
........................................................................................TTTAACGGGCCGTTCGCTA................................................................................................................................................................................................19194.00940056380000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21190.00900367200000000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................24173.00730136360000000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................22171.0071006740000000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23167.0067006520000000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20159.0059009500000000
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................21153.0053035000000000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................21149.0049004900000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGG........................................................................................................................................................................24147.0047004430000000
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................21132.0032003110000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAC...............................................................................................................................21130.0030003000000000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................18124.0024002220000000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................19120.0020015140000000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................20120.0020011090000000
...........................................................................................................AAAGGAACGATCGTTGTGATT...........................................................................................................................................................................21120.0020002000000000
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................18117.0017001700000000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................21114.0014011210000000
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................20114.0014001400000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................23113.0013001030000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................25113.0013001120000000
...........................................................................................................AAAGGAACGATCGTTGTGATC...........................................................................................................................................................................21112.001200930000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTA................................................................................................................................20112.0012001110000000
............................................................................................................AAGGAACGATCGTTGTGATAC..........................................................................................................................................................................21111.0011001100000000
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................20111.0011001100000000
...........................................................................................................AAAGGAACGATCGTTGTGATATTT........................................................................................................................................................................24111.0011001100000000
...........................................................................................................AAAGGAACGATCGTTGTGATATGAT.......................................................................................................................................................................25111.0011001100000000
droEre2
GT--TAGC---A------------------------------AATCCAG-----------TTAAG-----T-GATCC---CCT--A-ATTTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTGT-TC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----AAAAAGTCCAAAACTC---ATCAATGGG----------AAATGAAA------------------------------------GCCAAAGTTG----------CCAGC-----TTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................................................AAAGGAACGATCGTTGTGATATG.........................................................................................................................................................................2316818.00681811512632230038166
......................................................................................................................................................TATCACAGTGATTTTCCTTTAT...............................................................................................................................2213303.003303361170401233140
...........................................................................................................AAAGGAACGATCGTTGTGATAT..........................................................................................................................................................................2212638.00263830013661954980
......................................................................................................................................................TATCACAGTGATTTTCCTTTATA..............................................................................................................................2312516.00251651214570545020
...........................................................................................................AAAGGAACGATCGTTGTGATA...........................................................................................................................................................................211465.00465282610174110
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAT...............................................................................................................................211324.00324481520123010
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATA..............................................................................................................................221229.0022952143034000
...........................................................................................................AAAGGAACGATCGTTGTGAT............................................................................................................................................................................201229.002294740145240
...........................................................................................................AAAGGAACGATCGTTGTGATATT.........................................................................................................................................................................231194.001948280158000
...........................................................................................................AAAGGAACGATCGTTGTGATAC..........................................................................................................................................................................221112.00112110803000
............................................................................................................AAGGAACGATCGTTGTGATATG.........................................................................................................................................................................221109.00109107101000
......................................................................................................................................................TATCACAGTGATTTTCCTTTAC...............................................................................................................................221103.0010309904000
......................................................................................................................................................TATCACAGTGATTTTCCTTTA................................................................................................................................21166.00661534017000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.............................................................................................................................24165.00651032023000
...........................................................................................................AAAGGAACGATCGTTGTGATATGT........................................................................................................................................................................24155.005534209100
...........................................................................................................AAAGGAACGATCGTTGTGATATC.........................................................................................................................................................................23143.0043414025000
......................................................................................................................................................TATCACAGTGATTTTCCTTT.................................................................................................................................20137.003718028000
............................................................................................................AAGGAACGATCGTTGTGATAT..........................................................................................................................................................................21134.003431201000
...........................................................................................................AAAGGAACGATCGTTGTGATATGA........................................................................................................................................................................24130.003061608000
...........................................................................................................AAAGGAACGATCGTTGTGATATGC........................................................................................................................................................................24119.001901207000
........................................................................................TTTGACGGGCCGTTCGCTA................................................................................................................................................................................................19117.001740013000
..........................................................................................................................................................ACAGTGATTTTCCTTTAT...............................................................................................................................18116.001601015000
...........................................................................................................AAAGGAACGATCGTTGTGA.............................................................................................................................................................................19113.00130606010
.......................................................................................................................................................ATCACAGTGATTTTCCTTTAC...............................................................................................................................21111.001101100000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.............................................................................................................................23110.00103403000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.............................................................................................................................24110.00101306000
...........................................................................................................AAAGGAACGATCGTTGTGATACC.........................................................................................................................................................................23110.00100901000
...........................................................................................................AAAGGAACGATCGTTGTGATATA.........................................................................................................................................................................2319.0092007000
........................................................................................................................................................TCACAGTGATTTTCCTTTAT...............................................................................................................................2018.0082204000
...........................................................................................................AAAGGAACGATCGTTGTGAC............................................................................................................................................................................2017.0070700000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.............................................................................................................................2416.0060600000
......................................................................................................................................................TATCACAGTGATTTTCCTT..................................................................................................................................1916.0061104000
........................................................................................................................................................TCACAGTGATTTTCCTTTATA..............................................................................................................................2116.0060501000
..........................................................................................................................................................ACAGTGATTTTCCTTTATA..............................................................................................................................1915.0050203000
...........................................................................................................AAAGGAACGATCGTTGTGATATGTT.......................................................................................................................................................................2514.0040102100
...........................................................................................................AAAGGAACGATCGTTGTGATACT.........................................................................................................................................................................2314.0040103000
...........................................................................................................AAAGGAACGATCGTTGTG..............................................................................................................................................................................1814.0040102010
......................................................................................................................................................TATCACAGTGATTTTCCTTTATG..............................................................................................................................2314.0041201000
.............................................................................................................AGGAACGATCGTTGTGATATG.........................................................................................................................................................................2114.0043100000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATT..............................................................................................................................2313.0030201000
..............................................................................................................GGAACGATCGTTGTGATATG.........................................................................................................................................................................2013.0033000000
.......................................................................................................................................................ATCACAGTGATTTTCCTTTATT..............................................................................................................................2213.0030102000
.........................................................................................................................................................CACAGTGATTTTCCTTTATA..............................................................................................................................2013.0031200000
.........................................................................................................................................................CACAGTGATTTTCCTTTAT...............................................................................................................................1913.0031101000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATC..............................................................................................................................2313.0030102000
................................................................................................................AACGATCGTTGTGATATG.........................................................................................................................................................................1812.0020002000
...........................................................................................................AAAGGAACGATCGTTGTGATAA..........................................................................................................................................................................2212.0020101000
............................................................................................................AAGGAACGATCGTTGTGAT............................................................................................................................................................................1912.0021100000
...........................................................................................................AAAGGAACGATCGTTGTGATATTA........................................................................................................................................................................2412.0020002000
...............................................................................................................GAACGATCGTTGTGATATG.........................................................................................................................................................................1912.0021001000
......................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA............................................................................................................................2512.0020101000
........................................................................................................................................................TCACAGTGATTTTCCTTTATAA.............................................................................................................................2212.0021001000
...........................................................................................................AAAGGAACGATCGTTGTGATG...........................................................................................................................................................................2112.0021100000
......................................................................................................................................................TATCACAGTGATTTTCCT...................................................................................................................................1812.0020001010
.............................................................................................................AGGAACGATCGTTGTGATAT..........................................................................................................................................................................2012.0022000000
...........................................................................................................AAAGGAACGATCGTTGTGATAAT.........................................................................................................................................................................2312.0020002000

Generated: 10/20/2015 at 07:34 PM