ID:

dwi-mir-318-2

 Coordinate:

scf2_1100000004921:667-735 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_CDS

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.5 -29.4 -29.3

Flybase annnotation

pre_miRNA [Dwil\mir-318-2-RM]; Antisense to CDS [Dwil\GK22583-cds]; miRNA [Dwil\miR-318-2-RA]

No Repeatable elements found

mature

  1. dwi-mir-318-1  scf2_1100000004902:74256-74277 -
  2. dwi-mir-318-2  scf2_1100000004921:711-732 +
star

  1. dwi-mir-318-1  scf2_1100000004902:74294-74315 -
  2. dwi-mir-318-2  scf2_1100000004921:673-694 +

Sense Strand Reads

CCCGAGTGCCTGAGTGAATTTTGAATCATTTGAGTGTCAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGAGCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACAACTTACTGGGCTGGACAGGCAGGATTTGAAATCC

*****************************************..(((((..(((((((((((.((.(((((((((..(((((.......))).))..))))))))).)).)))))))))))...)))))...************************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 M020

head

 V117

male body		 V118

embryo

 V119

head
..............................................................................................TCACTGGGCTTTGTTTATCTCA..................................................... 22 0 2 34649.50 69299 62196 6855 180 47 21
..............................................................................................TCACTGGGCTTTGTTTATCTC...................................................... 21 0 2 4661.00 9322 7069 2201 36 2 14
...............................................................................................CACTGGGCTTTGTTTATCTCA..................................................... 21 0 2 2730.00 5460 5458 2 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCT....................................................... 20 0 2 872.00 1744 1709 18 13 0 4
..............................................................................................TCACTGGGCTTTGTTTATCTCAT.................................................... 23 0 2 710.00 1420 1321 99 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTC...................................................... 20 0 2 313.00 626 626 0 0 0 0
........................................................GGATACACCAAGTTCAGTTTTG........................................................................................... 22 0 2 174.50 349 349 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTCA..................................................... 22 1 2 170.00 340 339 1 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTCA..................................................... 20 0 2 146.50 293 285 5 2 0 1
..............................................................................................TCACTGGGCTTTGTTTATCTCAA.................................................... 23 1 2 110.00 220 211 8 0 1 0
..............................................................................................TCACTGGGCTTAGTTTATCTCA..................................................... 22 1 2 71.00 142 142 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCT....................................................... 19 0 2 65.50 131 131 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAT.................................................... 22 0 2 61.50 123 123 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCT..................................................... 22 1 2 53.50 107 104 3 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCG..................................................... 22 1 2 50.50 101 27 74 0 0 0
..............................................................................................TCACTGGGCTTCGTTTATCTCA..................................................... 22 1 2 41.50 83 81 2 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCTCA..................................................... 23 1 2 39.00 78 77 1 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTCA..................................................... 19 0 2 36.00 72 72 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAC.................................................... 23 1 2 34.50 69 64 5 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATC........................................................ 19 0 2 33.50 67 59 8 0 0 0
..............................................................................................TCACTGGGCCTTGTTTATCTCA..................................................... 22 1 2 25.50 51 43 8 0 0 0
..................................................................................................TGGGCTTTGTTTATCTCA..................................................... 18 0 2 23.00 46 46 0 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTC...................................................... 19 0 2 21.50 43 40 3 0 0 0
..............................................................................................TCACTGGGCTTTGCTTATCTCA..................................................... 22 1 2 20.50 41 36 5 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCCA..................................................... 22 1 2 19.50 39 33 5 1 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTCA..................................................... 23 1 2 19.00 38 38 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTCA..................................................... 23 0 2 17.50 35 35 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTC...................................................... 21 1 2 17.00 34 34 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATT................................................... 24 1 2 16.00 32 29 3 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCTCA..................................................... 23 1 2 16.00 32 32 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAG.................................................... 23 1 2 15.50 31 31 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTCA..................................................... 22 1 2 14.50 29 26 3 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTCA..................................................... 22 1 2 14.50 29 25 3 1 0 0
..............................................................................................TCACTGGGCTCTGTTTATCTCA..................................................... 22 1 2 13.50 27 24 3 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCTCA..................................................... 22 1 2 13.00 26 24 2 0 0 0
..............................................................................................TCACCGGGCTTTGTTTATCTCA..................................................... 22 1 2 12.50 25 23 1 1 0 0
..............................................................................................TCACTGGGCTTTGTCTATCTCA..................................................... 22 1 2 11.50 23 19 4 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTCA..................................................... 22 1 2 11.00 22 19 2 0 1 0
..............................................................................................TCACTGGGCTTTGTTCATCTCA..................................................... 22 1 2 10.00 20 19 1 0 0 0
..............................................................................................GCACTGGGCTTTGTTTATCTCA..................................................... 22 1 2 10.00 20 20 0 0 0 0
..............................................................................................ACACTGGGCTTTGTTTATCTCA..................................................... 22 1 2 9.50 19 17 2 0 0 0
..............................................................................................TCACTGGGCTTTATTTATCTCA..................................................... 22 1 2 9.00 18 6 12 0 0 0
..............................................................................................TCACTGGGCTTTCTTTATCTCA..................................................... 22 1 2 8.50 17 8 9 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAA.................................................... 22 1 2 8.00 16 16 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCC..................................................... 22 1 2 8.00 16 14 2 0 0 0
..............................................................................................TCACTTGGCTTTGTTTATCTCA..................................................... 22 1 2 7.50 15 15 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCT..................................................... 21 1 2 7.00 14 14 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTGATCTCA..................................................... 22 1 2 7.00 14 13 1 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCTCA..................................................... 22 1 2 7.00 14 11 3 0 0 0
..............................................................................................TCACTGGGCTTTGGTTATCTCA..................................................... 22 1 2 6.50 13 6 7 0 0 0
..............................................................................................TCACTGGACTTTGTTTATCTCA..................................................... 22 1 2 6.50 13 13 0 0 0 0
.........................................................GATACACCAAGTTCAGTTTTG........................................................................................... 21 0 2 6.50 13 13 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTGTCTCA..................................................... 22 1 2 6.50 13 11 1 0 1 0
..............................................................................................TCACTGGCCTTTGTTTATCTCA..................................................... 22 1 2 6.00 12 12 0 0 0 0
..............................................................................................TCACTGGGCCTTGTTTATCTC...................................................... 21 1 2 6.00 12 8 4 0 0 0
..............................................................................................TCACTGGGCTGTGTTTATCTCA..................................................... 22 1 2 5.50 11 11 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCT....................................................... 20 1 2 5.50 11 11 0 0 0 0
..............................................................................................TCACTGGGCTTCGTTTATCTC...................................................... 21 1 2 5.50 11 11 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATC........................................................ 18 0 2 5.50 11 11 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTAT......................................................... 18 0 2 5.00 10 10 0 0 0 0
..............................................................................................TCACTGGTCTTTGTTTATCTCA..................................................... 22 1 2 4.50 9 9 0 0 0 0
...............................................................................................CACTGGGCTTTCTTTATCTCA..................................................... 21 1 2 4.50 9 9 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTAA..................................................... 22 1 2 4.50 9 9 0 0 0 0
..............................................................................................TCACTGAGCTTTGTTTATCTCA..................................................... 22 1 2 4.50 9 8 1 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTCATT................................................... 22 1 2 4.50 9 6 2 0 1 0
..............................................................................................TCACTGGGGTTTGTTTATCTCA..................................................... 22 1 2 4.50 9 5 4 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCTC...................................................... 21 1 2 4.50 9 2 7 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTT...................................................... 21 1 2 4.50 9 9 0 0 0 0
..............................................................................................TCACTGGGCTTTGCTTATCTC...................................................... 21 1 2 4.00 8 5 3 0 0 0
...............................................................................................CACTGGGCTTTATTTATCTCA..................................................... 21 1 2 4.00 8 8 0 0 0 0
.......................................................GGGATACACCAAGTTCAGTTTTG........................................................................................... 23 0 2 4.00 8 8 0 0 0 0
..............................................................................................TCACTGGGATTTGTTTATCTCA..................................................... 22 1 2 4.00 8 7 1 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCTC...................................................... 22 1 2 4.00 8 8 0 0 0 0
..............................................................................................TCACTGGGCTTTATTTATCTC...................................................... 21 1 2 4.00 8 0 8 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTTA..................................................... 22 1 2 3.50 7 5 2 0 0 0
..............................................................................................TTACTGGGCTTTGTTTATCTCA..................................................... 22 1 2 3.50 7 6 1 0 0 0
..............................................................................................TCACTGGGCTATGTTTATCTCA..................................................... 22 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACTGGGCGTTGTTTATCTCA..................................................... 22 1 2 3.50 7 4 3 0 0 0
..............................................................................................TCACTCGGCTTTGTTTATCTCA..................................................... 22 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTGA..................................................... 22 1 2 3.50 7 6 1 0 0 0
...............................................................................................CACTGGGCTTTTTTTATCTCA..................................................... 21 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACTCGGCTTTGTTTATCTC...................................................... 21 1 2 3.50 7 5 2 0 0 0
..............................................................................................TCACTGTGCTTTGTTTATCTCA..................................................... 22 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACCGGGCTTTGTTTATCTC...................................................... 21 1 2 3.50 7 4 3 0 0 0
................................................................................................ACTGGGCTTTGTTTATCT....................................................... 18 0 2 3.00 6 6 0 0 0 0
................................................................................................TCTGGGCTTTGTTTATCTCA..................................................... 20 1 2 3.00 6 6 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTAATCTCA..................................................... 22 1 2 3.00 6 6 0 0 0 0
.....................................CAGACGGTTTCAATTTATG................................................................................................................. 19 0 2 3.00 6 6 0 0 0 0
............................................................................................CTTCACTGGGCTTTGTTTATCTCA..................................................... 24 1 2 3.00 6 6 0 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTC...................................................... 18 0 2 3.00 6 6 0 0 0 0
..............................................................................................TCACTAGGCTTTGTTTATCTCA..................................................... 22 1 2 3.00 6 5 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTAACTCA..................................................... 22 1 2 3.00 6 5 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTTTCTCA..................................................... 22 1 2 3.00 6 6 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATGTCA..................................................... 22 1 2 3.00 6 5 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATTTCA..................................................... 22 1 2 3.00 6 5 1 0 0 0
..............................................................................................TGACTGGGCTTTGTTTATCTCA..................................................... 22 1 2 2.50 5 5 0 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCTC...................................................... 22 1 2 2.50 5 5 0 0 0 0
........................................................GGATACACACAGTTCAGTTTTG........................................................................................... 22 2 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTTGGCTTTGTTTATCTC...................................................... 21 1 2 2.50 5 3 2 0 0 0
...............................................................................................CACTGGGCTTTGTTTGTCTCA..................................................... 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTTAGTTTATCT....................................................... 20 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCTCTGGGCTTTGTTTATCTCA..................................................... 22 1 2 2.50 5 4 1 0 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTC...................................................... 22 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTC...................................................... 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATCTC...................................................... 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACAGGGCTTTGTTTATCTCA..................................................... 22 1 2 2.50 5 3 2 0 0 0
...............................................................................................CGCTGGGCTTTGTTTATCTCA..................................................... 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCTC...................................................... 21 1 2 2.50 5 3 2 0 0 0
..............................................................................................TCACTGGGCTTTGATTATCTCA..................................................... 22 1 2 2.00 4 3 1 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCG..................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTC...................................................... 21 1 2 2.00 4 4 0 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTCAT.................................................... 21 0 2 2.00 4 4 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCCCA..................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTAGTTTATCTC...................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGCGCTTTGTTTATCTCA..................................................... 22 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATTTC...................................................... 21 1 2 2.00 4 3 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTA...................................................... 21 1 2 2.00 4 4 0 0 0 0
............................................................................................GTTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 2.00 4 4 0 0 0 0
..............................................................................................TCACGGGGCTTTGTTTATCTCA..................................................... 22 1 2 2.00 4 3 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATATCA..................................................... 22 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCC...................................................... 21 1 2 2.00 4 1 3 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCA...................................................... 21 2 2 2.00 4 4 0 0 0 0
...............................................................................................CACTGGGCTTGGTTTATCTCA..................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTATATCTCA..................................................... 22 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTATATCTC...................................................... 21 1 2 2.00 4 3 1 0 0 0
..............................................................................................TAACTGGGCTTTGTTTATCTCA..................................................... 22 1 2 2.00 4 4 0 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCT....................................................... 21 1 2 1.50 3 3 0 0 0 0
.......................................................TGGATACACCAAGTTCAGTTTTG........................................................................................... 23 1 2 1.50 3 3 0 0 0 0
................................................................................................ACTGGGCTTTGGTTATCTCA..................................................... 20 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCACA..................................................... 22 1 2 1.50 3 2 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATA................................................... 24 0 2 1.50 3 3 0 0 0 0
..............................................................................................TCATTGGGCTTTGTTTATCTCA..................................................... 22 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCT....................................................... 20 1 2 1.50 3 3 0 0 0 0
........................................................GGATACACCAAGTTCAGTTTT............................................................................................ 21 0 2 1.50 3 3 0 0 0 0
...............................................................................................TCCTGGGCTTTGTTTATCTCA..................................................... 21 2 2 1.50 3 3 0 0 0 0
...............................................................................................CACTGGACTTTGTTTATCTCA..................................................... 21 1 2 1.50 3 3 0 0 0 0
...............................................................................................CACTGGGCTTTGTTCATCTCA..................................................... 21 1 2 1.50 3 3 0 0 0 0
...............................................................................................CACTGGGCCTTGTTTATCTCA..................................................... 21 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTCAT.................................................... 23 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGCGCTTTGTTTATCTC...................................................... 21 1 2 1.50 3 3 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTC...................................................... 22 0 2 1.50 3 3 0 0 0 0
...............................................................................................CACTGGGCTTTGCTTATCTCA..................................................... 21 1 2 1.50 3 3 0 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTCATT................................................... 21 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCGCA..................................................... 22 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCCCTGGGCTTTGTTTATCTCA..................................................... 22 1 2 1.50 3 0 0 3 0 0
..............................................................................................TTACTGGGCTTTGTTTATCTC...................................................... 21 1 2 1.50 3 1 2 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCATT................................................... 23 1 2 1.00 2 2 0 0 0 0
................................................................................................TCAGGGCTTTGTTTATCTCA..................................................... 20 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCACA................................................... 24 1 2 1.00 2 2 0 0 0 0
............................................................................................ATTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 1.00 2 2 0 0 0 0
...............................................................................................CACCGGGCTTTGTTTATCTCA..................................................... 21 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCA....................................................... 20 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTCATCTC...................................................... 21 1 2 1.00 2 1 1 0 0 0
...............................................................................................CAATGGGCTTTGTTTATCTC...................................................... 20 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTGTATCTCA..................................................... 22 1 2 1.00 2 2 0 0 0 0
............................................................................................CGTCACTGGGCTTTGTTTATCTCA..................................................... 24 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGCCTTTGTTTATCTC...................................................... 21 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAAAAAA................................................ 27 2 1 1.00 1 1 0 0 0 0
....................................TCAGACGGTTTCAATTTATG................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTCGTTTATCT....................................................... 20 1 2 1.00 2 2 0 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTCAT.................................................... 20 0 2 1.00 2 2 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTCAT.................................................... 24 0 2 1.00 2 2 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAG.................................................... 22 1 2 1.00 2 2 0 0 0 0
............................................................................................ACTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGTTCTTTGTTTATCTCA..................................................... 22 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTG...................................................... 21 1 2 1.00 2 2 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCT....................................................... 21 0 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGACTTTGTTTATCTC...................................................... 21 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTTT..................................................... 22 2 2 1.00 2 2 0 0 0 0
............................................................................................ACTCACTGGGCTTTGTTTATCTC...................................................... 23 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCAATGGGCTTTGTTTATCTCA..................................................... 22 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGTCTTTGTTTATCTC...................................................... 21 1 2 1.00 2 1 1 0 0 0
..............................................................................................ACACTGGGCTTTGTTTATCTC...................................................... 21 1 2 1.00 2 2 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTACCTCA..................................................... 21 1 2 1.00 2 2 0 0 0 0
.........................................................GATACACCAAGTTCAGTTTT............................................................................................ 20 0 2 1.00 2 2 0 0 0 0
...................................GTCAGACGGTTTCAATTTATG................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..............................................................................................TCATTGGGCTTTGTTTATCTC...................................................... 21 1 2 1.00 2 1 1 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCATTA.................................................. 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCTCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTCAC.................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTCAA.................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTCTTTATCTCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACGGGGCTTTGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTTTTTCA..................................................... 22 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTCAG.................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGAGCTTTGTTTATCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCC....................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCACC................................................... 24 2 2 0.50 1 0 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTTTCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCACT................................................... 24 2 2 0.50 1 0 1 0 0 0
...............................................................................................CACTGGGCTTTCTTTATCTC...................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
...........................................................................................CCCTCACTGGGCTTTGTTTATCTCA..................................................... 25 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCATTGTTTATCTC...................................................... 21 1 2 0.50 1 0 1 0 0 0
...........................................................................................AACTCACTGGGCTTTGTTTATCTCA..................................................... 25 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATG................................................... 24 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGATTTGTTTATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
............................................................................................TGTCACTGGGCTTTGTTTATCTC...................................................... 23 2 2 0.50 1 1 0 0 0 0
...........................................................................................ATTTCACTGGGCTTTGTTTATCTCA..................................................... 25 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTAGCTCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCTCAA.................................................... 24 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGGTTTGTTTATCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATATC...................................................... 21 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGTTTTGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
................................................................................................ACCGGGCTTTGTTTATCTC...................................................... 19 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTAGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
............................................................................................AGTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTCGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
.............................................................................................TTCACTGGGCTGTGTTTATCTCA..................................................... 23 2 2 0.50 1 1 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTCATCTCA..................................................... 23 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCA....................................................... 19 1 2 0.50 1 1 0 0 0 0
...........................................................TACACCAAGTTCAGTTTTGTCG........................................................................................ 22 0 2 0.50 1 1 0 0 0 0
.................................................................................................CTGGGCTTTGTGTATCTCA..................................................... 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCCTGGTTTATCTCA..................................................... 22 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATATCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................TCGCATTCCACGAGCATCACTGGGCTT................................................................ 27 0 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTGATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
...........................................................................................AACTCACTGGGCTTTGTTTATCTC...................................................... 24 3 2 0.50 1 1 0 0 0 0
...........................................................................................TGGTCACTGGGCTTTGTTTATCTCA..................................................... 25 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATTT.................................................. 25 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACAGGGCTTTGTTTATCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTATTTATCTCAA.................................................... 22 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTT...................................................... 21 2 2 0.50 1 0 1 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATC........................................................ 19 1 2 0.50 1 1 0 0 0 0
..........................................................................................TTCATCACTGGGCTTTGTTTATCTCA..................................................... 26 2 2 0.50 1 1 0 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCTCAT.................................................... 24 1 2 0.50 1 1 0 0 0 0
........................................................................................TCATCATCACTGGGCTTTGTTTATCTCA..................................................... 28 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACCCGGCTTTGTTTATCTCAA.................................................... 23 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATCTCAC.................................................... 23 2 2 0.50 1 1 0 0 0 0
........................................................................................CGAGCATCACTGGGCTTTGTTTATCTCA..................................................... 28 0 2 0.50 1 1 0 0 0 0
.......................................................GGGATACACCAAGTTCAGTTTT............................................................................................ 22 0 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGCTTATCTCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
.............................................................................................ATCACTGGGCTGTGTTTATCTCA..................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGTGCTTTGTTTATCTCT..................................................... 22 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTCTCA....................................................... 20 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTCTATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAAA................................................... 24 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATATCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTGTGTTTATCTCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
...........................................................................................CTATCACTGGGCTTTGTTTATCTCA..................................................... 25 2 2 0.50 1 1 0 0 0 0
............................................................................................TGTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAATTCAGTTTTG........................................................................................... 22 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATG........................................................ 19 1 2 0.50 1 1 0 0 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTCAA.................................................... 24 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTC...................................................... 21 1 2 0.50 1 0 1 0 0 0
................................................................................................TCTGGGCTTTGTTTATCTC...................................................... 19 1 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGACTTTGTTTATCTCA..................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................CCACTGGGCTTGGTTTATCT....................................................... 20 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCCAA.................................................... 23 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCACA..................................................... 21 1 2 0.50 1 1 0 0 0 0
............................................................................................TTTCACTGGGCTTTGTTTATCTCAT.................................................... 25 2 2 0.50 1 1 0 0 0 0
..........................................................................................CAAATCACTGGGCTTTGTTTATCTCA..................................................... 26 3 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAC.................................................... 22 1 2 0.50 1 1 0 0 0 0
................................................................................................ACTTGGCTTTGTTTATCTC...................................................... 19 1 2 0.50 1 1 0 0 0 0
...........................................................................................ATATCACTGGGCTTTGTTTATCTCA..................................................... 25 2 2 0.50 1 1 0 0 0 0
..........................................................................................TACTTCACTGGGCTTTGTTTATCTCA..................................................... 26 3 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGTCTTTGTTTATCTCAT.................................................... 22 1 2 0.50 1 1 0 0 0 0
................................................................................................CCTGGGCTTTGTTTATCTCAT.................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTGTCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAGTTCTGTTTTG........................................................................................... 22 1 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAGTTCAGTTG............................................................................................. 20 1 2 0.50 1 1 0 0 0 0
...............................................................................................CATTGGGCTTTGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGTGCTTTGTTTATCTC...................................................... 20 1 2 0.50 1 1 0 0 0 0
..........................................................................................ATTATCACTGGGCTTTGTTTATCTCA..................................................... 26 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCATTGTTTATCTCA..................................................... 22 1 2 0.50 1 0 1 0 0 0
...........................................................................................TGGTCACTGGGCTTTGTTTATCTCAT.................................................... 26 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGGTTTGTTTATC........................................................ 19 1 2 0.50 1 0 1 0 0 0
...............................................................................................CACTGGCCTTTGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
............................................................................................TTTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 0.50 1 1 0 0 0 0
...........................................................................................GTCTCACTGGGCTTTGTTTATCTCA..................................................... 25 2 2 0.50 1 1 0 0 0 0
...........................................................................................ATTTCACTGGGCTTTGTTTATCTC...................................................... 24 3 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAGTTCATTTTTG........................................................................................... 22 1 2 0.50 1 1 0 0 0 0
...............................................................................................CGCTGGGCTTTGTTTATCTC...................................................... 20 1 2 0.50 1 1 0 0 0 0
............................................................................................GGTCACTGGGCTTTGTTTATCTCA..................................................... 24 2 2 0.50 1 1 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATGTCA..................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTCTTTATCTC...................................................... 21 1 2 0.50 1 0 1 0 0 0
...............................................................................................CACTGGTCTTTGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
..........................................................................................TACATCACTGGGCTTTGTTTATCTCA..................................................... 26 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAGG................................................... 24 2 2 0.50 1 1 0 0 0 0
.......................................................AGGATACACCAAGTTCAGTTTTG........................................................................................... 23 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGAGCTTTGTTTATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTCTATCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGGCTTTGTTTACCTC...................................................... 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCGA.................................................... 23 2 2 0.50 1 1 0 0 0 0
............................................................................................CCTCACTGGGCTTTGTTTATCTCA..................................................... 24 1 2 0.50 1 1 0 0 0 0
..........................................................................................TACCTCACTGGGCTTTGTTTATCTCA..................................................... 26 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCCTTTTTTATCTCA..................................................... 22 2 2 0.50 1 0 1 0 0 0
...............................................................................................CACTGGGCTTTGTTGATCTCA..................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTCAC.................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAGC................................................... 24 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTCATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTTTTTAT......................................................... 18 1 2 0.50 1 1 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTCAA.................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTGTCTCAT.................................................... 23 1 2 0.50 1 1 0 0 0 0
...........................................................................................TACTCACTGGGCTTTGTTTATCTCA..................................................... 25 3 2 0.50 1 1 0 0 0 0
.............................................................................................TTAACTGGGCTTTGTTTATCTCA..................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCCCTGGGCTTTGTTTATCTC...................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTAGGCTTTGTTTATCT....................................................... 20 1 2 0.50 1 1 0 0 0 0
...........................................................................................AACTCACTGGGCTTTGTTTATCTCAT.................................................... 26 3 2 0.50 1 1 0 0 0 0

Anti-sense strand reads

GGGCTCACGGACTCACTTAAAACTTAGTAAACTCACAGTCTGCCAAAGTTAAATACCCTATGTGGTTCAAGTCAAAACAGCGTAAGGTGCTCGTAGTGACCCGAAACAAATAGAGTATTTCCTCTTTACTTATGTTGAATGACCCGACCTGTCCGTCCTAAACTTTAGG

**************************************..(((((..(((((((((((.((.(((((((((..(((((.......))).))..))))))))).)).)))))))))))...)))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 M045

female body
................................................................GTTCAAGTCAAAACAGCGTAAGGTGC............................................................................... 26 0 2 0.50 1 1 0
....................................................................................................................................................CTGTTCGTCCTAAACTTG... 18 2 4 0.25 1 1 0
...................................................................................................................................................CCGGTCCCTCCTGAACTTT... 19 3 20 0.10 2 0 2
................................................................GTTCAAGTCAAACCGGTGTA..................................................................................... 20 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004921:617-785 + dwi-mir-318-2 Known_mirbase CCCGAGTGCCT-GAGTGAATT-----------TTG-A----------AT--------------CATTT-GAGTGTCAG-ACGGTTTCAATTTATGGGATACACCAAGT-TCAGTTTTGTCG----CATTCCACGA-------GCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACAACTTACTGGGCTGG-----------------------------------------------------ACAGGCAGGATTTGAAATCC
droVir3 scaffold_13047:1194286-1194449 + dvi-mir-318 Known_mirbase TTCGGGGAGCA-------GT-----------TTGAGAATTTTTTAGAAGTGATTTGG-------------------------ATTTCAATTTATGGGATACACCAAGT-TCAGTTTTGTCA----GATGTCC-AA-------GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCAACTTACAGGGCTGG-----------------------------------------------------ACAAGCATGACTTAAAGTCT
droMoj3 scaffold_6540:5225293-5225461 + dmo-mir-318 Known_mirbase GTCGCGTTGCGGTTTTGAACT-----------TGA---------------GATTTGAAA------------TGTGATTAAGGATTTCAATTTATGGGATACACTAAGT-TCAGTTTTGTCA----GATGTCC-AA-------GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGG-----------------------------------------------------ACAGGCACGACTTGAAGTCT
droGri2 scaffold_14906:5076878-5077048 - GCCTGCAGATA-------TTCGCGAATAATGTCAACCTTCTTCTCGGAGCGATCTACAACAT-------------------------AATATACAA-ATTCAATGAGT-CCAACTTTTT-ATGC-ATTGTCG--------TC----------------------------------------------------------GCGTACGCACTTGTTTTCATCATGTAGCCCAGCGTATTCTCATCTATGGGGAAGTAGCCAACGGTGGCTCCGT
dp5 2:7230932-7231101 - GCCTTCAGATA-------CTCCCGAATGATGTCGATCTTCTTCTCCGATCGATCTGTAATTTA--TA--G---------------------GGAAACATAAGCTAAA------ATGCAATC----GATATAG-GAATC--CT----------------------------------------------------------CTTTACGTACTTGTTTGCTTCATGTAGCCCAAGGTATTTTCATCGATGGGGAAGTAGCCAACGGTGGCTCCAT
droPer2 scaffold_0:1091566-1091735 - GCCTTCAGATA-------CTCCCGAATGATGTCGATCTTCTTCTCCGATCGATCTGTAATTTA--TA--G---------------------GGAAACATAAGCCAAA------ACGCAATC----GATATAG-AAATC--TT----------------------------------------------------------CTTTACGCACTTGTTTGCTTCATGTAGCCCAAGGTATTTTCATCGATGGGGAAGTAGCCAACGGTGGCTCCAT
droAna3 scaffold_13340:860218-860387 - GCCTTAAGATA-------CTCCCGAATAATATCTATTTTCTTCTCCGAGCGATCTTTAGAGGA--TTA-C---------------------CAT---GAAAGTAAGA--ATTGTT-------------AA------------------------------------------------------GGAAATTTAGAACTGTGCAAGCTTACTTGACTGCCTCATGTAGTCCAAGGTATTCTCGTCGACGGGGAAGAACGCCACAGTGGCTCCGT
droBip1 scf7180000396691:1652382-1652543 - GCCTTGAGGTA-------CTGCCGAATGACGTCGATTTTCTTCTCGGATCGATCTATGAATTA--TAT-T-------TAT-----------TATTTTATATCCAA--------AAT-A-------------T-ATATA--AT----------------------------------------------------------GTCAACTCACTTGTCTGAGCCATGTAGCTAAGAGTGTTCTCATCAATCGGGAAATAACCCACGGTGGCCCCGT
droKik1 scf7180000302475:1425851-1425983 + ACCGAGTC--AAGTGTTAGTC-----------CT-----------AGAAGGACCCACCC------------AGTGCCC-CCGATTTCAATTTATGGGATACACACAGT-TCAGTTTTGTCA----CATTTTTCGA-TC--C-TCATCACTGGGCTTTGTTTATCTCATAA----------------------------------------------------------------------------------------------AAGCGAAAT
droFic1 scf7180000454055:269644-269815 - GCCTTCAAGTA-------CTGCCTGATGATGTCGATTTTCTCCTCCGAGCGATCTGTAAGAAA--TAAAG----------------CAATAAACAA-ATAATATAAAA-CCAAATT-AAG---TGAAC------------TT----------------------------------------------------------AAAAACTCACTTGTCTGCCGCATGTAACTCAGCGTGTTCTCATCGATCGGAAAATAACCCACAGTTGCACCAT
droEle1 scf7180000490995:505805-505977 - GCCTTCAGATA-------CTGACGAATGATGTCGATCTTCTTCTCCGAGCGATCTGGAATGGG--TT--T---------------------TAAAATGTAATCTAAAT-ACTGATATATG---CGGACTATGA------AGT----------------------------------------------------------TGTTCCTCACTGGTCTGCTTCATGTAGCCAAGAGTGTTCTCGTCAATGGGGAAATATCCCACGGTGGCTCCGT
droRho1 scf7180000777285:67387-67554 - GCCTTTAAATA-------CTGGCGGATGATGTCGATCTTCTTCTCGGAGCGATCTGTCAACCA--GAA-----------------TCCATTT-----ATAGACAA--------AAT-AATA----GCTATTT-AAATA--GA----------------------------------------------------------ATAAACCCACTGGTCTGCCGCATGTAATTCAGTGTGTTCTCATCGATGGGAAAGTAGCCCACAGTGGCTCCAT
droBia1 scf7180000302402:5162195-5162357 - GCCTTTAAGTA-------CTGCCGGATAATGTCGATCTTCTTTTCGGAGCGATCTGTTCAACG--TAG-----------------TCAATAA-----ATATACAA--------------TA----TCTGTAT-TGCTT--GG----------------------------------------------------------GTGAACTCACTGGTTTGGCGCATGTAACTGAGCGTGTTCTCGTCGATGGGAAAATAGCCCACAGTGGCTCCGT
droTak1 scf7180000415380:1396593-1396761 - GCCTTCAAATA-------CTCCCGAATGATGGAAATCTTCTTCTCCGAGCGATCTTAAAAAAA--TAA-A--------------------------TATAAGATATTATACAAATT-A--------AGATAA-TAATTTAGA----------------------------------------------------------GGTAACTCACTTGACAGCTTTAGGTAGCTGAGGGTATTCTCGTCAATGGGGAAATAGCCAATAGTGGCTCCGT
droEug1 scf7180000409692:710199-710332 + TTTAAGTGCCTTGAATGAATT-----------CTG-T----------AAG-------------GAA----TACGACCC-CTGGTTTCAGTTTATGGGATACACACAGC-TCAGTCTTGTCA----CATGTC--AA-------GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAA-------------------------------------------------------------------------------------TTTATTCAAC
dm3 chr3R:6233976-6234108 + dme-mir-318 Known_mirbase TCCGAGTGCCTTGCGTGAATC-----------CTG-G----------AT--------------GAA----AAGGTCCT-TCGGTTTCAGTTTATGGGATACACACAGT-TCAGTTTTGTCA----CACTTC--AA-------GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAA-------------------------------------------------------------------------------------TTTATTCAAC
droSim2 3r:14840281-14840451 - GCCTTTAGATA-------CTGGCGAATGATGTCGATCTTCTTTTCAGAGCGATCTAAAAAGTT--TG--T---------------------TATGATATAAGTAAAAT-ATTGTTTTATGA----AACAGTGT-------GA----------------------------------------------------------TTTCCCGTACTTGTCTGCTTCATGTAACCAAGAGTATTCTCATCGATGGGGAAGTATCCCACGGTGGCTCCGT
droSec2 scaffold_0:15706858-15707028 - GCCTTTAGATA-------CTGGCGAATGATGTCGATCTTCTTTTCAGAGCGATCTAAAATGTT--TG--T---------------------TATGATATAAGTAAAAT-ATTGTTTTATGA----AACAGTTT-------GA----------------------------------------------------------TTTTCCGTACTTGTCTGCTTCATGTAACCAAGAGTATTCTCATCGATGGGGAAGTATCCCACGGTGGCTCCGT
droYak3 3R:10262491-10262623 + dya-mir-318 Known_mirbase TCCGAGTGCCTAGCGTGTATC-----------CTG-G----------AT--------------GAA----AAGGTCCT-CCGGTTTCAGTTTATGGGATACACACAGT-TCAGTTTTGTCG----CACTAC--AA-------GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAA-------------------------------------------------------------------------------------TTTGTTCAAC
droEre2 scaffold_4820:9524281-9524450 - GCCTTTAAATA-------CTGCCGGATAATATCGATTTTCTTCTCGGAGCGATCTAAGGAAC------------------------CAATCCAT-GGATATCTAGTAT-TCAATTTAAT-A----AATGTTTT-------AG----------------------------------------------------------ATTAACTCACTGGTTTGGCGCATGTAACTCAGGGTGTTTTCATCGATTGGGAAGTAGCCCACAGTGGCTCCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCCGAGTGCCT-GAGTGAATT-----------TTG-A----------AT--------------CATTT-GAGTGTCAG-ACGGTTTCAATTTATGGGATACACCAAGT-TCAGTTTTGTCG----CATTCCACGA-------GCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACAACTTACTGGGCTGG-----------------------------------------------------ACAGGCAGGATTTGAAATCCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCA..........................................................................................................22234649.50692996855621961804721
.................................................................................................................................................TCACTGGGCTTTGTTTATCTC...........................................................................................................2124661.0093222201706936214
..................................................................................................................................................CACTGGGCTTTGTTTATCTCA..........................................................................................................2122730.00546025458000
.................................................................................................................................................TCACTGGGCTTTGTTTATCT............................................................................................................202872.0017441817091304
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.........................................................................................................232710.001420991321000
..................................................................................................................................................CACTGGGCTTTGTTTATCTC...........................................................................................................202313.006260626000
...............................................................................................GGATACACCAAGT-TCAGTTTTG...........................................................................................................................................................222174.503490349000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCA..........................................................................................................202146.502935285201
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.........................................................................................................232110.002208211010
..................................................................................................................................................CACTGGGCTTTGTTTATCT............................................................................................................19265.501310131000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.........................................................................................................22261.501230123000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCT..........................................................................................................22253.501073104000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCG..........................................................................................................22250.501017427000
....................................................................................................................................................CTGGGCTTTGTTTATCTCA..........................................................................................................19236.0072072000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.........................................................................................................23234.5069564000
.................................................................................................................................................TCACTGGGCTTTGTTTATC.............................................................................................................19233.5067859000
.....................................................................................................................................................TGGGCTTTGTTTATCTCA..........................................................................................................18223.0046046000
...................................................................................................................................................ACTGGGCTTTGTTTATCTC...........................................................................................................19221.5043340000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA..........................................................................................................23217.5035035000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT........................................................................................................24216.0032329000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.........................................................................................................23215.5031031000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.........................................................................................................2228.0016016000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCC..........................................................................................................2228.0016214000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCT..........................................................................................................2127.0014014000
................................................................................................GATACACCAAGT-TCAGTTTTG...........................................................................................................................................................2126.5013013000
..................................................................................................................................................CACTGGGCTTTGTTTATC.............................................................................................................1825.5011011000
.................................................................................................................................................TCACTGGGCTTTGTTTAT..............................................................................................................1825.0010010000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATT........................................................................................................2224.50926010
.................................................................................................................................................TCACTGGGCTTTGTTTATCTT...........................................................................................................2124.50909000
..............................................................................................GGGATACACCAAGT-TCAGTTTTG...........................................................................................................................................................2324.00808000
...................................................................................................................................................ACTGGGCTTTGTTTATCT............................................................................................................1823.00606000
...........................................................................CAG-ACGGTTTCAATTTATG..................................................................................................................................................................................1923.00606000
....................................................................................................................................................CTGGGCTTTGTTTATCTC...........................................................................................................1823.00606000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCG..........................................................................................................2122.00404000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.........................................................................................................2122.00404000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTA...........................................................................................................2122.00404000
.................................................................................................................................................TCACTGGGCTTTGTTTATCCA...........................................................................................................2122.00404000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA........................................................................................................2421.50303000
...............................................................................................GGATACACCAAGT-TCAGTTTT............................................................................................................................................................2121.50303000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTC...........................................................................................................2221.50303000
....................................................................................................................................................CTGGGCTTTGTTTATCTCATT........................................................................................................2121.50303000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCATT........................................................................................................2321.00202000
.................................................................................................................................................TCACTGGGCTTTGTTTATCA............................................................................................................2021.00202000
..........................................................................TCAG-ACGGTTTCAATTTATG..................................................................................................................................................................................2011.00101000
....................................................................................................................................................CTGGGCTTTGTTTATCTCAT.........................................................................................................2021.00202000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT.........................................................................................................2421.00202000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.........................................................................................................2221.00202000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTG...........................................................................................................2121.00202000
................................................................................................................................................ATCACTGGGCTTTGTTTATCT............................................................................................................2121.00202000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTTT..........................................................................................................2221.00202000
................................................................................................GATACACCAAGT-TCAGTTTT............................................................................................................................................................2021.00202000
.........................................................................GTCAG-ACGGTTTCAATTTATG..................................................................................................................................................................................2111.00101000
.................................................................................................................................................TCACTGGGCTTTGTTTATCC............................................................................................................2020.50101000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCACC........................................................................................................2420.50110000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCACT........................................................................................................2420.50110000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG........................................................................................................2420.50101000
..................................................................................................................................................CACTGGGCTTTGTTTATCA............................................................................................................1920.50101000
..................................................................................................TACACCAAGT-TCAGTTTTGTCG----....................................................................................................................................................2220.50101000
......................................................................................................................TCG----CATTCCACGA-------GCATCACTGGGCTT.....................................................................................................................2720.50101000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT.......................................................................................................2520.50101000
....................................................................................................................................CGA-------GCATCACTGGGCTTTGTTTATCTCA..........................................................................................................2820.50101000
..............................................................................................GGGATACACCAAGT-TCAGTTTT............................................................................................................................................................2220.50101000
.................................................................................................................................................TCACTGGGCTTTGTTTATG.............................................................................................................1920.50101000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.........................................................................................................2220.50101000
...............................................................................................GGATACACCAAGT-TCAGTTG.............................................................................................................................................................2020.50101000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG........................................................................................................2420.50101000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA.........................................................................................................2320.50101000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGC........................................................................................................2420.50101000
droVir3
TTCGGGGAGCA-------GT-----------TTGAGAATTTTTTAGAAGTGATTTGG-------------------------ATTTCAATTTATGGGATACACCAAGT-TCAGTTTTGTCA----GATGTCC-AA-------GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCAACTTACAGGGCTGG-----------------------------------------------------ACAAGCATGACTTAAAGTCTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCA..........................................................................................................2212224776.0022247764350252493034295106439225671166216965213291212406698768592811329646661334602011105712315035993511671447951841021198658841505000000000000001106060493111356152904954219171631324630834818538120994626845528238320287318619676
.................................................................................................................................................TCACTGGGCTTTGTTTATCTC...........................................................................................................211882154.0088215441485580902578109619975116671311608313662211254675143319605865868821867629931316972714329720840100000000000000114830017283122834989913158519163228980849975613829613716810257271840906
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.........................................................................................................23135988.0035988068870405113610320310200204025612351157710962946341856153832536586000000000000000001300002210252191113433040812459270835503622118233834
.................................................................................................................................................TCACTGGGCTTTGTTTATCT............................................................................................................20129926.0029926422265406293416356111808662183010111452411659240830473274193171481479185361046541000000000000000000230111344263113144461573461937863054103930216208
..................................................................................................................................................CACTGGGCTTTGTTTATCTCA..........................................................................................................2116544.006544004789030225013011000000000100269163188158200002001046000000000000000000000006132100017824213117415117900001
...................................................................................................................................................ACTGGGCTTTGTTTATCTCA..........................................................................................................2015837.00583700263026672911960840030201146012464402805667803001010101247290000000000000000010000010926400024935620926024930300000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.........................................................................................................2315394.0053940117501170145026011000120001111150334238579539300113102236000000000000000000010002017532842141444625528636140833163
.................................................................................................................................................TCACTGGGCTTTGTTTATC.............................................................................................................1913952.00395211314001805254054025012000001100233112107150811100060031283200000000000000000330020159751004105073042224352540021214
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCC..........................................................................................................2212434.002434215041694871120970000002075004173614302600100400006207000000000000000002000006901033342527583601003
...............................................................................................GGATACACCAAGT-TCAGTTTTG...........................................................................................................................................................2212114.002114001020140150000000000000000227231471150000000000500000000000000000000000015522400031429611017622216700000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCT..........................................................................................................2212011.002011129006621281500320000002023105210166106801000010011252000000000000000000300000479400016311511810317513301279
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCG..........................................................................................................2211725.0017250131905427002401400000000020037541251540001000000108100000000000000000100000167700022920614311716425101112
...................................................................................................................................................ACTGGGCTTTGTTTATCTC...........................................................................................................1911335.001335002401702406407400000000100024402737510000040000500000000000000000001001000280001452129312613016200000
..................................................................................................................................................CACTGGGCTTTGTTTATCTC...........................................................................................................2011117.0011170052804060506000000000000241415100000000000700000000000000000000000002000931106567869100020
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT........................................................................................................241956.0095600120110401010000001000001233225373100000000042100000000000000000000009183900010312989871169800010
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATT........................................................................................................221710.0071000304190100000000000000617444390000000000141000000000000000000000001730000988468691119000000
....................................................................................................................................................CTGGGCTTTGTTTATCTCA..........................................................................................................191705.0070500480401720200000000000200353215715100000000004600000000000000000000000082800053622941303800001
.................................................................................................................................................TCACTGGGCTTTGTTTAT..............................................................................................................181437.004370028080260203000000000100347826603200000330105300000000000000000000000093800056828200001
.....................................................................................................................................................TGGGCTTTGTTTATCTCA..........................................................................................................181332.003320032011040040001000000010013241023190000000000320000000000000000000000010370001835106132000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.........................................................................................................231325.0032500170311400010000001001006181437600000000000160000000000000000000000007110002922919162200001
..................................................................................................................................................CACTGGGCTTTGTTTATCT............................................................................................................191251.00251002270001000000000000000013461000000000050000000000000000000000000100000011000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.........................................................................................................211216.002160090516200000000000000031613375600000000008000000000000000000000000113800023121200000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTT...........................................................................................................211212.002120123080601601100000000000029511500000010002400000000000000000000000008000131713816900114
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.........................................................................................................221171.0017100930200000000000000000016110110000000000200000000000000000000000047000453471100000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA..........................................................................................................231170.00170007600020000000000000000141230000000000000000000000000000000000605400006212001000
...................................................................................................................................................ACTGGGCTTTGTTTATCT............................................................................................................181151.001510011050100110900000000010013141614120000000000280000000000000000000000001500010000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATA........................................................................................................221148.001480000302000000000000000023322180000000000200000000000000000000000011230001011610111000100
...........................................................................................TATGGGATACACCAAGT-TCAGT...............................................................................................................................................................221140.00140003030130170100000000000086414230000000000200000000000000000000000055000312462900000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC........................................................................................................241133.00133001040400000000000000002323110000010000400000000000000000000000370200081747111200000
....................................................................................................................................................CTGGGCTTTGTTTATCTC...........................................................................................................181129.0012900400060705000000000000111330000000000200000000000000000000000300100072011471600000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTA...........................................................................................................211127.00127005030208090000000000003223000000000004000000000000000000000001200000141188131401131
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGC.......................................................................................................................241105.00105001000000000000000000000010200000000001000000000000000000000002010008151712182700000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.........................................................................................................23167.006700170100000000000000000014083000000000020000000000000000000000002400055044700000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCT......................................................................................................................25153.005300401020100000000000000016158000000000010000000000000000000000002000013101600000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTTT....................................................................................................................27152.005200801020100000000000000142116000000000030000000000000000001000001000011800100000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTC...........................................................................................................22151.005100400000100000000000000100000000000000000000000000000000000000260000053425000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCA............................................................................................................20149.00490012000001000000000000002113300000000001400000000000000000000000120000000000000000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTT.....................................................................................................................26144.004400500010200000000000000022104000000000010000000000000000003000000000013313300000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA........................................................................................................24142.00420000001000000000000000014268000000000000000000000000000000000000200084032100000
....................................................................................................................................................CTGGGCTTTGTTTATCTCATA........................................................................................................21140.00400000200010100000000000001146000000000010000000000000000000000001000025542400000
......................................................................................................................................................GGGCTTTGTTTATCTCA..........................................................................................................17139.0039000000000000000000000000000000000000000000000000000000000000000102900000000000000
..............................................................................................GGGATACACCAAGT-TCAGTTTTG...........................................................................................................................................................23139.00390000000000000000000000000012000000000000000000000000000000000000000038759400000
....................................................................................................................................................CTGGGCTTTGTTTATCTCATT........................................................................................................21136.00360000002010000000000000021062000000000020000000000000000000000000300024434000000
.....................................................................................................................................................TGGGCTTTGTTTATCTC...........................................................................................................17135.003500000000000000000000000000000000000000000000000000000000000000350000000000000000
.....................................................................................................................................................TGGGCTTTGTTTATCTCATAAG......................................................................................................22133.00330010000010100000000000025188000000000000000000000000000000000000200000011200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTTTG...................................................................................................................28132.00320050100000000000000000014271000000000010000000000000000000000014000004000100000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTG...........................................................................................................21130.00300030000020200000000000001010000000000000000000000000000000000000000046312300200
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGG.........................................................................................................................22130.003000601000000000000000000002220000000000000000000000000000000000051200000000000000
.............................................................................................TGGGATACACCAAGT-TCAGTTT.............................................................................................................................................................22129.002900300000000000000000000011109000000000000000000000000000000000001400000000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCC............................................................................................................20128.00280100202010000000000000055121000000000030000000000000000000000000100013000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCC..........................................................................................................20124.00240000705000200000000000080000000000000020000000000000000000000000000000000000000
...............................................................................................GGATACACCAAGT-TCAGTTTTGTCA----GATG................................................................................................................................................29123.002300000000000000000000000000000000000000000000000000000000000000000000710211200000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.........................................................................................................22122.002200190000000000000000000000011000000000010000000000000000000000000000000000000000
....................................................................................................................................................CTGGGCTTTGTTTATCTCAT.........................................................................................................20122.00220020000000000000000000012012000000000000000000000000000000000000100014122300000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG........................................................................................................24121.00210000000000000000000000010000000000000000000000000000000000000000000043321700000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT........................................................................................................24120.00200020000000000000000000000133000000000030000000000000000000000001000030003100000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.........................................................................................................21120.00200010001000000000000000001254000000000030000000000000000000000000200010000000000
...............................................................................................GGATACACCAAGT-TCAGTTTT............................................................................................................................................................21117.00170020001000000000000000000042000000000000000000000000000000000002600000000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCT..........................................................................................................21117.001700160000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCATC........................................................................................................23116.001600000000000000000000000000000000000000000000000000000000000000160000000000000000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGG........................................................................................................................23116.00160030100000000000000000003113000000000000000000000000000000000003000000001000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCCA.........................................................................................................23116.00160000304000000000000000030010000000000050000000000000000000000000000000000000000
................................................................................................GATACACCAAGT-TCAGTTTTG...........................................................................................................................................................21115.00150020000000000000000000001010000000000000000000000000000000000000100010313200000
...................................................................................................ACACCAAGT-TCAGTTTTG...........................................................................................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000014005500000
.................................................................................................................................................TCACTGGGCTTTGTTTA...............................................................................................................17115.00150000000000000000000000000000000000000000000000000000000000000071700000000000000
.................................................................................................ATACACCAAGT-TCAGTTTTG...........................................................................................................................................................20114.00140000001000000000000000001011000000000000000000000000000000000007000001020000000
.................................................................................................................................................TCACTGGGCTTTGTTTATA.............................................................................................................19114.00140040001000000000000000021112000000000020000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT.......................................................................................................25113.00130000200000000000000000000331000000000000000000000000000000000004000000000000000
....................................................................................................................................................CTGGGCTTTGTTTATCT............................................................................................................17112.001200000000000000000000000000000000000000000000000000000000000000111000000000000000
...............................................................................................................................................CATCACTGGGCTTTGTTTATCTCA..........................................................................................................24112.00120040000000000000000000001021000000000000000000000000000000000002100000000100000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT.......................................................................................................23112.00120000000000000000000000000041000000000000000000000000000000000003200000002000000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTTTGT..................................................................................................................29111.00110000100000000000000000000002000000000000000000000000000000000051200000000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG........................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000010100002111400000
.......................................................................................................................................................GGCTTTGTTTATCTCAT.........................................................................................................17111.00110000000000000000000000000000000000000000000000000000000000000003800000000000000
.....................................................................................................................................................TGGGCTTTGTTTATCTCAT.........................................................................................................19111.00110010001000000000000000002121000000000000000000000000000000000001000010000100000
.................................................................................................................................................TCACTGGGCTTTGTTTATT.............................................................................................................19111.00110040100000000000000000010011000000000030000000000000000000000000000000000000000
............................................................................................ATGGGATACACCAAGT-TCAGTT..............................................................................................................................................................22110.00100000000010000000000000010122000000000000000000000000000000000000000000030000000
..................................................................................................................................................CACTGGGCTTTGTTTATC.............................................................................................................18110.00100090000000000000000000000000000000000000000000000000000000000000000000000100000
droMoj3
GTCGCGTTGCGGTTTTGAACT-----------TGA---------------GATTTGAAA------------TGTGATTAAGGATTTCAATTTATGGGATACACTAAGT-TCAGTTTTGTCA----GATGTCC-AA-------GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGG-----------------------------------------------------ACAGGCACGACTTGAAGTCTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCA..........................................................................................................22190827.009082789758767886901
.................................................................................................................................................TCACTGGGCTTTGTTTATCTC...........................................................................................................21111568.001156811351028239157
..................................................................................................................................................CACTGGGCTTTGTTTATCTCA..........................................................................................................2117938.007938793800000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.........................................................................................................2317421.0074217397032217
.................................................................................................................................................TCACTGGGCTTTGTTTATCT............................................................................................................2015279.005279511603729097
..................................................................................................................................................CACTGGGCTTTGTTTATCTC...........................................................................................................2011004.001004100400000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.........................................................................................................221675.0067567500000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.........................................................................................................231631.0063162500114
..................................................................................................................................................CACTGGGCTTTGTTTATCT............................................................................................................191424.0042442400000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCT..........................................................................................................221368.0036836201104
...................................................................................................................................................ACTGGGCTTTGTTTATCTCA..........................................................................................................201322.0032232100001
.................................................................................................................................................TCACTGGGCTTTGTTTATC.............................................................................................................191195.0019518801303
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT........................................................................................................241118.0011811700001
.................................................................................................................................................TCACTGGGCTTTGTTTAT..............................................................................................................18196.00969400101
.................................................................................................................................................TCACTGGGCTTTGTTTATCTT...........................................................................................................21188.00888800000
...............................................................................................GGATACACTAAGT-TCAGTTTTG...........................................................................................................................................................22175.00757300020
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.........................................................................................................23175.00757300020
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA..........................................................................................................23166.00666600000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.........................................................................................................21156.00565600000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.........................................................................................................22154.00545400000
...................................................................................................................................................ACTGGGCTTTGTTTATCTC...........................................................................................................19145.00454500000
....................................................................................................................................................CTGGGCTTTGTTTATCTCA..........................................................................................................19137.00373700000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCT..........................................................................................................21131.00313100000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATT........................................................................................................22130.00302900001
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCG..........................................................................................................22129.00292700002
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.........................................................................................................23128.00282800000
.....................................................................................................................................................TGGGCTTTGTTTATCTCA..........................................................................................................18124.00242400000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCC..........................................................................................................22119.00191711000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATA........................................................................................................22116.00161600000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCATT........................................................................................................23116.00161600000
...................................................................................................................................................ACTGGGCTTTGTTTATCT............................................................................................................18113.00131300000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTA...........................................................................................................21112.00121200000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA........................................................................................................24111.00111100000
..................................................................................................................................................CACTGGGCTTTGTTTATC.............................................................................................................18110.00101000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTT...........................................................................................................2018.008800000
....................................................................................................................................................CTGGGCTTTGTTTATCTCAT.........................................................................................................2018.008800000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTC...........................................................................................................2218.008800000
.............................................................................................TGGGATACACTAAGT-TCAGTTT.............................................................................................................................................................2217.007700000
.................................................................................................................................................TCACTGGGCTTTGTTTATCA............................................................................................................2017.007700000
................................................................................................GATACACTAAGT-TCAGTTTTG...........................................................................................................................................................2117.007700000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT.........................................................................................................2417.007700000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.........................................................................................................2216.006600000
....................................................................................................................................................CTGGGCTTTGTTTATCTCATT........................................................................................................2116.006600000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTTT..........................................................................................................2216.006600000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC........................................................................................................2415.005500000
.................................................................................................................................................TCACTGGGCTTTGTTTATCC............................................................................................................2015.005500000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCT......................................................................................................................2515.005500000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTG...........................................................................................................2115.005500000
....................................................................................................................................................CTGGGCTTTGTTTATCTC...........................................................................................................1815.005500000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCATA........................................................................................................2314.004400000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT.......................................................................................................2514.004400000
.................................................................................................................................................TCACTGGGCTTTGTTTATT.............................................................................................................1914.004400000
...............................................................................................................................................CATCACTGGGCTTTGTTTATCTCA..........................................................................................................2414.004400000
................................................................................................................................................ATCACTGGGCTTTGTTTATCT............................................................................................................2114.004400000
.....................................................................................................................................................TGGGCTTTGTTTATCTCAT.........................................................................................................1913.003300000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGC.......................................................................................................................2412.002100001
.................................................................................................................................................TCACTGGGCTTTGTTTATA.............................................................................................................1912.002200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTTTGT..................................................................................................................2912.002200000
.................................................................................................................................................TCACTGGGCTTTGTTTATCG............................................................................................................2012.002200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGG........................................................................................................................2312.002200000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA.......................................................................................................2512.002200000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG........................................................................................................2412.002200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTTT....................................................................................................................2712.002200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGG.........................................................................................................................2212.002200000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCG..........................................................................................................2112.002200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGCTTTG...................................................................................................................2812.002200000
......................................................................................................................TCA----GATGTCC-AA-------GCATCACTGGGA.......................................................................................................................2412.002200000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT........................................................................................................2412.002100001
.................................................................................................................................................TCACTGGGCTTTGTTTAA..............................................................................................................1811.001100000
.................................................................................................................................................TCACTGGGCTTTGTTTATCCA...........................................................................................................2111.001000001
..............................................................................................GGGATACACTAAGT-TCAGTTTT............................................................................................................................................................2211.001100000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTTT......................................................................................................2611.001100000
..............................................................................................GGGATACACTAAGT-TCAGTTTG............................................................................................................................................................2211.001100000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.........................................................................................................2211.001100000
...............................................................................................GGATACACTAAGT-TCAGTTTT............................................................................................................................................................2111.001100000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG.......................................................................................................2511.001100000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT.......................................................................................................2311.001100000
droGri2
GCCTGCAGATA-------TTCGCGAATAATGTCAACCTTCTTCTCGGAGCGATCTACAACAT-------------------------AATATACAA-ATTCAATGAGT-CCAACTTTTT-ATGC-ATTGTCG--------TC----------------------------------------------------------GCGTACGCACTTGTTTTCATCATGTAGCCCAGCGTATTCTCATCTATGGGGAAGTAGCCAACGGTGGCTCCGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
dp5
GCCTTCAGATA-------CTCCCGAATGATGTCGATCTTCTTCTCCGATCGATCTGTAATTTA--TA--G---------------------GGAAACATAAGCTAAA------ATGCAATC----GATATAG-GAATC--CT----------------------------------------------------------CTTTACGTACTTGTTTGCTTCATGTAGCCCAAGGTATTTTCATCGATGGGGAAGTAGCCAACGGTGGCTCCATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
GCCTTCAGATA-------CTCCCGAATGATGTCGATCTTCTTCTCCGATCGATCTGTAATTTA--TA--G---------------------GGAAACATAAGCCAAA------ACGCAATC----GATATAG-AAATC--TT----------------------------------------------------------CTTTACGCACTTGTTTGCTTCATGTAGCCCAAGGTATTTTCATCGATGGGGAAGTAGCCAACGGTGGCTCCATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droAna3
GCCTTAAGATA-------CTCCCGAATAATATCTATTTTCTTCTCCGAGCGATCTTTAGAGGA--TTA-C---------------------CAT---GAAAGTAAGA--ATTGTT-------------AA------------------------------------------------------GGAAATTTAGAACTGTGCAAGCTTACTTGACTGCCTCATGTAGTCCAAGGTATTCTCGTCGACGGGGAAGAACGCCACAGTGGCTCCGTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
No Reads
droBip1
GCCTTGAGGTA-------CTGCCGAATGACGTCGATTTTCTTCTCGGATCGATCTATGAATTA--TAT-T-------TAT-----------TATTTTATATCCAA--------AAT-A-------------T-ATATA--AT----------------------------------------------------------GTCAACTCACTTGTCTGAGCCATGTAGCTAAGAGTGTTCTCATCAATCGGGAAATAACCCACGGTGGCCCCGTSizeHit CountTotal NormTotal
No Reads
droKik1
ACCGAGTC--AAGTGTTAGTC-----------CT-----------AGAAGGACCCACCC------------AGTGCCC-CCGATTTCAATTTATGGGATACACACAGT-TCAGTTTTGTCA----CATTTTTCGA-TC--C-TCATCACTGGGCTTTGTTTATCTCATAA----------------------------------------------------------------------------------------------AAGCGAAATSizeHit CountTotal NormTotal
No Reads
droFic1
GCCTTCAAGTA-------CTGCCTGATGATGTCGATTTTCTCCTCCGAGCGATCTGTAAGAAA--TAAAG----------------CAATAAACAA-ATAATATAAAA-CCAAATT-AAG---TGAAC------------TT----------------------------------------------------------AAAAACTCACTTGTCTGCCGCATGTAACTCAGCGTGTTCTCATCGATCGGAAAATAACCCACAGTTGCACCATSizeHit CountTotal NormTotal
No Reads
droEle1
GCCTTCAGATA-------CTGACGAATGATGTCGATCTTCTTCTCCGAGCGATCTGGAATGGG--TT--T---------------------TAAAATGTAATCTAAAT-ACTGATATATG---CGGACTATGA------AGT----------------------------------------------------------TGTTCCTCACTGGTCTGCTTCATGTAGCCAAGAGTGTTCTCGTCAATGGGGAAATATCCCACGGTGGCTCCGTSizeHit CountTotal NormTotal
No Reads
droRho1
GCCTTTAAATA-------CTGGCGGATGATGTCGATCTTCTTCTCGGAGCGATCTGTCAACCA--GAA-----------------TCCATTT-----ATAGACAA--------AAT-AATA----GCTATTT-AAATA--GA----------------------------------------------------------ATAAACCCACTGGTCTGCCGCATGTAATTCAGTGTGTTCTCATCGATGGGAAAGTAGCCCACAGTGGCTCCATSizeHit CountTotal NormTotal
No Reads
droBia1
GCCTTTAAGTA-------CTGCCGGATAATGTCGATCTTCTTTTCGGAGCGATCTGTTCAACG--TAG-----------------TCAATAA-----ATATACAA--------------TA----TCTGTAT-TGCTT--GG----------------------------------------------------------GTGAACTCACTGGTTTGGCGCATGTAACTGAGCGTGTTCTCGTCGATGGGAAAATAGCCCACAGTGGCTCCGTSizeHit CountTotal NormTotal
No Reads
droTak1
GCCTTCAAATA-------CTCCCGAATGATGGAAATCTTCTTCTCCGAGCGATCTTAAAAAAA--TAA-A--------------------------TATAAGATATTATACAAATT-A--------AGATAA-TAATTTAGA----------------------------------------------------------GGTAACTCACTTGACAGCTTTAGGTAGCTGAGGGTATTCTCGTCAATGGGGAAATAGCCAATAGTGGCTCCGTSizeHit CountTotal NormTotal
No Reads
droEug1
TTTAAGTGCCTTGAATGAATT-----------CTG-T----------AAG-------------GAA----TACGACCC-CTGGTTTCAGTTTATGGGATACACACAGC-TCAGTCTTGTCA----CATGTC--AA-------GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAA-------------------------------------------------------------------------------------TTTATTCAACSizeHit CountTotal NormTotal
No Reads
dm3
TCCGAGTGCCTTGCGTGAATC-----------CTG-G----------AT--------------GAA----AAGGTCCT-TCGGTTTCAGTTTATGGGATACACACAGT-TCAGTTTTGTCA----CACTTC--AA-------GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAA-------------------------------------------------------------------------------------TTTATTCAACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCA..........................................................................................................22118436845.00184368452805412364000000010000001558244380644187525935800036000468372354648042241074070445877848122848394417721294799595141192108406125194729231706972651300072472000000000000000001521811151375205014837211413023131908164101532410777979285231618346246092000509012155358413146073640336191675661541115371264142717012733118409362161124162327564379109349168599325004950461420192557321323861421083001357030911306422829616924221687511242811328764768376209467336920331623601211631922782361732791173205418297101851678351613376028129667397713625309612923156609667078107521685747428331350051482008503512223158210129753283172356441116466552134223889959510011984992049335097561242743230767911221802592469451224122117151113271019851187332560757645931377158424310930432123292183478383515576145117201186163914524193646248130654408451773724127105291702107132
.................................................................................................................................................TCACTGGGCTTTGTTTATCTC...........................................................................................................2112351916.002351916000004800010000000000156346871492521890000000044032513628023983672449076144166421691039671392849667114426708108011603120010102000000000000000007999987500001041510331002387110002216232242974080023602160000010002022211741634303312031897664521955126022244281700686151320844277241397719543349151029202201316141539808010001120101142106638673462115766281301033912601082439455493274601580498821175134134621834157135964181613813352240828813116578010749754778236397115001613100000235224104313255913811943912860121636101121250462636713294585561173937334977837122026991731112421084640039619120795372693862073715164953592117553765723284844728215389919101132761136131417331861252206893722
.................................................................................................................................................TCACTGGGCTTTGTTTATCT............................................................................................................201687247.0068724700001140001000000000030415878702515000000004125695318477998122630497631091932197174191225252958235719443490003900000000000000000043544537000000081021021531100007123640571160002110101000000002861912198157659142632473502246400740622799203835323683478660718250000047572292992400004000020500112923611071199995108613600211321675810312741012181651055250636022195310722522510876857859693277106841522210821136701300290000000543320010319100740750502210031401602148670983741328132987704311303241685838125154107419438001144378461280238673158687043216441413928248084242711191581230616176736232029139083764463637
...................................................................................................................................................ACTGGGCTTTGTTTATCTCA..........................................................................................................201266139.002661390000000000000000000027680213031200000000840431879321735241106134203528280334523932438153681435297050000000000000000000000034130000000000000007000000000000050010000100000000000010012251912460110214233573093960200656291245523344212148600000307104100200000000000150120057377143355702724026700000521280231000004974297472163448761634536812614122900000000000028200101000300000000000000000000105866334831772941489026099274044765882000000110016013131575101840697500000028316135719200100000000007030834147000300
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCC..........................................................................................................22187483.0087483000002000000000000006568403802000000007711410074122280625992622155111599820769551461790000000000000000000000010100000000000000001500000000010005000000010000000010010020354117762002225842944321491138269375990526000000000110200000000000000000002122430221070131010018670200010004732731421571527070348318000020000001110000000125000000100000000000000132110011298135627672083215821114910000000000020289665629655105330000169414219700000000000000922306001000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.........................................................................................................23178291.00782910000010000000010000040162200050000000020872218118182418928328953634623362322141612148000000000000000000000000101000000000000010560000000112000100000000000000000000021020194113001055926272184031231237649388829800000100011010010000000000013003047220171402449349014050012246172326250303168201525219814962381011366512822651500000011660000010900000001160000001000001000100003074647411973147626711474398492811000000000000001155200397519520000015358651582000000100100008316213043020843
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCT..........................................................................................................22154509.005450900000100000000000000135430020200000000179291287286111638266058425396708210114467150000000000000000000000001102100000120001000220000001000000300000001000000000000011834267032028108373268292160104224751026446000000000100001000000000040080031341265100302710001357201010020049211388916314357690331752610000030000002450100000124000000103000000000000156656864071326291212044138353873000000000005032746694719791000029011188500000000000000007373511000521
.................................................................................................................................................TCACTGGGCTTTGTTTATC.............................................................................................................19143121.004312100000000000000000000136280500040000000099688153512142314981021011714815398842900000000000000000000000768700000000000000035000000000010070000000000000000000106755970605140232013812720121514929623419512526991623481160000020220000000000000000000031209217349120010067823118377040921002013242033579493734801711083804823550000095100000330000000250001000000010000100001677306560514472348414095218421211021020000114628047936565700001225058612131000000012010091233749712119111
..................................................................................................................................................CACTGGGCTTTGTTTATCTCA..........................................................................................................21140415.0040415000000000000000000001166201020000000051204594117496301331212110912345198290001000000000000000000001010000000000000003210000010000001000000000000000000001000445142126110100122259771813782332434631260000000000000020000000000000100325002240002028000011822001200100773210117460242909891501034543000000000005900000000500000000000000000000012336532326134715821029113316691100000000000100329921212622000000367322549000000101000001633237000005
...................................................................................................................................................ACTGGGCTTTGTTTATCTC...........................................................................................................19134420.00344200000000000000000000036801000400000000985114936761129151620241301632281346523345000000000000000000000000111000000000000000100000000000000000000000000000000000013102100203558322126206781333424942619200000000040000000000000000000101040230110010034000007140001000001665610596116176284643486232860000000000012000000012000000000000000000000126873583001484129186445963734000000000000101974432568160010003023165510000001000000141098416000100
...................................................................................................................................................ACTGGGCTTTGTTTATCT............................................................................................................18110293.0010293000000000000000000005321000100000000132141614138630455440602918379000000000000000000000000401000000000000000000000000000000000000000000000000000120000000201024836642351533395110000020010000000000000000000010001609100000900000040000000001312510564397921721011020000000000030000000000000001000000000000004532263121512465324610775800000011000000019905419300000075224000000000000000219147000000
....................................................................................................................................................CTGGGCTTTGTTTATCTCA..........................................................................................................19110063.00100630000000000000000000020127000000000000083815024222043358433996970000000000000000000000001000000000000000003000000000000010000000000000000000000030002001000222416812042756659636000000000000000000000000000000001571120000104700013962000000003224637293371261800000000000200000000100000000000000000000059931807434827317892151448000000000000200511553476000001468398000000000000000340000009
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.........................................................................................................2319837.00983700000100000000000000844000010000000016810818040816249442456441511300024100000000000000000000132000000000000000200000000000000700000000000000000000000330270000021812043742804170162590000000000000010000000000000000113636200130152010025240001000004970010571791517753431011581059000136100000140000000010000000010000000000001714405516828867536280421001000000000012220610821000000028891330000000000000041474000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCG..........................................................................................................2228879.001775800000500000000000000133100000000000001115162390237321411668110421879108000000000000000000000000001000000000000000320000000000000900000000000000000100021181418340000010973364381778425459000000100000000000000000001000013661112000201700000394200001000079442212391410134251482080000000000063000000001000000000000000000000086716453014981771329413262465201000000000101348523402631000000179348529000000100000002147564000500
..................................................................................................................................................CACTGGGCTTTGTTTATCTC...........................................................................................................2015523.00552300000000000000000000280000000000000743130615020261411812300000000000000000000000011000000000000000050000000000000100000000000000000000012001351000005245197130193311000000000000000000000000000000000202100000400000130000000001101285294112874997530000000000010000000020000000000000000000003331388692622321512805150000000000000001855267900000029556500000000000000013143000100
.....................................................................................................................................................TGGGCTTTGTTTATCTCA..........................................................................................................1815045.005045000000000000000000002710800100000000005440403090271242330511000000000000000000000000000000000000000000010000000000000100000000000000000000000100014000000101183345122149278000000000000000000000000000000000272110000001811034090000000001732280305051000000000002000000000000000000000000000000231178428158117825107862000000000000000305414230000002129260000000000000001200000010
...............................................................................................GGATACACACAGT-TCAGTTTTG...........................................................................................................................................................2214844.004844000004000000000000001110000000000040458480284231142117312132110004327400000000000000000000000000000100000011410000005240002400000000000000000000000000000000001392446241043471938000002030000000000000001000000000402243000002000006700000000011461281343157324728000000000009800000000100000000000000000000022115181333420841211000000000000303207103667303000000227305243100000000000003271000705
.................................................................................................................................................TCACTGGGCTTTGTTTAT..............................................................................................................1814190.004190000000000000000000001857000000000000019252111102104951711823117197000000000000000000000002425000000100000000130000000000001300000000000000001102584577641000012880020035514230333517261400000000100000000000000000001030102402230000023100106500100010252911522191492141612000100000006000000001000000000000020000000841742863961691062273000020100001029375132420000003710024100100000000000554200010113
.................................................................................................................................................TCACTGGGCTTTGTTTATCTA...........................................................................................................2114119.004119000001000000000000000710000000000003053130105321028494539420000000000000000000000000000000000000000004000000000000000000000000000000000006801101000000636102330152429900000000000000000000000000000100016111100000400000240000000003011274292321513042000000000000000000000000000000000000000000770446166102726486236961010000000000025714852100000010204000000000000000134972000100
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.........................................................................................................2313996.003996000000000000000000001140000000000000135741202032133005737281740800000000000000000000000000000000000000000011000000000000010100100000000000000002003028000000855121920222558250000000002000000000000000000000001007300030000001360000000002130021026301110766183139000024100000110000000000000000000000000000005443329871327331465030000000000001005784811030000001629500000000000000001141000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC........................................................................................................2412658.0026580000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000422221230000259635000000000000000000000000000000000000000001000000000000000001001000000000000000000000000200000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTT...........................................................................................................2112332.002332000002000000000000002500002000000001124100151618111813239810000000000000000000000000010000000000010001000000000000000000000000000000000002410120000100813181680412112000000000000100000000000000000000101100000400000780001000007020625713655896171000010000001500000001000000000000000000000018522748642613468411300000000000000114194623000001112743000000000000001752000100
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA........................................................................................................2412058.0020580000000000000000000013000000000000085335020001211289013800000000000000000000000000000000000000000000000000000000000000000000000000000000030030000000436126111350000000000000000000000000000000004000000200000013100000000070105687584749363520000000000010000000000000000000000000000005712220901502923612100000000000000018281641000000111545000100100000006430000000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA..........................................................................................................2311905.001905000003000000000000002000000000000001141201030917350222000000000000000000000000000000000000000000190000000000000400000000000000000000000002200010011261821305200000000000000000000000000000000000200000020000003000000100000060713959135135000000000000000000000000000000000000000000362481467654693123500000000000000022491130000001624641000000000000001500000000
..................................................................................................................................................CACTGGGCTTTGTTTATCT............................................................................................................1911686.0016860000000000000000000002000020000000003310011000033513200000000000000000000000000100000000000000000000000000000000000000000000000000123000000000101105930242400000000000000000000000000000000010000000000000000000000000200016892102199000000000000000000000000000000000000000000101462168090572138400000000000000131481600000031730000000000000001332000002
.................................................................................................................................................TCACTGGGCTTTGTTTATCTG...........................................................................................................2111274.001274000000000000000000000000000000000000000100012010015520000000000000000000000000000000000000000000000000000000000100000000000000000000011000110000001012101542000000000000000000000000000000000001000000000000000000000000011210113030000000000010000000010000000000000000000002561525330243157125811000000000000043173035000000055000000000000000120000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.........................................................................................................2111170.001170000000000000000000001400000000000004134402040201861014400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000626401312176000000000000000000000000000000000301000000000000020000000000000125111033221100000000000000000000000000000000000000000037167174837305271900000000000000007289220000002319000000000000000120000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCC..........................................................................................................2011117.001117000000000000000000000000000000000004261706115020227901433220000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001061424020141915000000000000000000000000000000000101000000100000000000000000000600020540000000000010000000000000000000000000000001414823124129317910000000000000013812125140000000215000000000000000030000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCC............................................................................................................201986.00986000000000000000000000000000000000001221101030104001220000000000000000000000000000000000000000000000000000000000000000000000000000001012000000010001505101220000000010000000000000000000000000302000000200000110000000003000523167116000000000001000000002000000000000000000000114197245797160274300000000000000213111923000000414410000000000000041042000200
.................................................................................................................................................TCACTGGGCTTTGTTTATCA............................................................................................................201830.008300000010000000000000001000010000000020012022003011024000000000000000000000000000000000000000000000000000000000000000000000000000000066200000000003924512231000000000000000000000000000051000001000000100000010000000000000201077151922190000000000000000000000000000001000000000005299124511320672600000000000000045940000002832000000000000002302000100
.................................................................................................................................................TCACTGGGCTTTGTTTATCTAC..........................................................................................................221823.0082300000000000000000000430000000000000001200800020038282700000000000000000000000000000000000000000000000000000000000000000000000000000000012021000000011246103101130000000000000000000000000000100002010000101000000100000000010000000110100001000000100000000000000000000000000000072671318435351820000000000000009271337000000101000000000000000000000000
droSim2
GCCTTTAGATA-------CTGGCGAATGATGTCGATCTTCTTTTCAGAGCGATCTAAAAAGTT--TG--T---------------------TATGATATAAGTAAAAT-ATTGTTTTATGA----AACAGTGT-------GA----------------------------------------------------------TTTCCCGTACTTGTCTGCTTCATGTAACCAAGAGTATTCTCATCGATGGGGAAGTATCCCACGGTGGCTCCGTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........TA-------CTGGCGAATGATGTCGATCTT..........................................................................................................................................................................................................................................2311.00100000001000000000
droSec2
GCCTTTAGATA-------CTGGCGAATGATGTCGATCTTCTTTTCAGAGCGATCTAAAATGTT--TG--T---------------------TATGATATAAGTAAAAT-ATTGTTTTATGA----AACAGTTT-------GA----------------------------------------------------------TTTTCCGTACTTGTCTGCTTCATGTAACCAAGAGTATTCTCATCGATGGGGAAGTATCCCACGGTGGCTCCGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
TCCGAGTGCCTAGCGTGTATC-----------CTG-G----------AT--------------GAA----AAGGTCCT-CCGGTTTCAGTTTATGGGATACACACAGT-TCAGTTTTGTCG----CACTAC--AA-------GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAA-------------------------------------------------------------------------------------TTTGTTCAACSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCA..........................................................................................................22188093.00880931704854662120829732800087
.................................................................................................................................................TCACTGGGCTTTGTTTATCTC...........................................................................................................2119211.00921191081231021363700083
..................................................................................................................................................CACTGGGCTTTGTTTATCTCA..........................................................................................................2117718.00771807717001000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCT............................................................................................................2011577.001577271528008470003
..................................................................................................................................................CACTGGGCTTTGTTTATCTC...........................................................................................................201661.006610661000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCA..........................................................................................................201384.003842374003320000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.........................................................................................................231318.003180315000210000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCT..........................................................................................................221196.001960192000400000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.........................................................................................................231156.001564152000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCG..........................................................................................................222124.0024824224000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCT............................................................................................................191103.001030103000000000
...............................................................................................GGATACACACAGT-TCAGTTTTG...........................................................................................................................................................22197.0097096000010000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA..........................................................................................................23191.0091091000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATC.............................................................................................................19167.00671156000000000
....................................................................................................................................................CTGGGCTTTGTTTATCTCA..........................................................................................................19152.0052052000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCC..........................................................................................................22150.0050041002700000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.........................................................................................................22137.0037037000000000
.....................................................................................................................................................TGGGCTTTGTTTATCTCA..........................................................................................................18128.0028026000010001
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.........................................................................................................23127.0027027000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTC...........................................................................................................19127.0027027000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.........................................................................................................23125.0025025000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCT..........................................................................................................21115.0015015000000000
................................................................................................................................................ATCACTGGGCTTTGTTTATCTC...........................................................................................................2219.00909000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCT............................................................................................................1819.00909000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTT...........................................................................................................2118.00817000000000
....................................................................................................................................................CTGGGCTTTGTTTATCTC...........................................................................................................1818.00808000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.........................................................................................................2218.00808000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCC............................................................................................................2017.00761000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTA...........................................................................................................2116.00623000000001
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA........................................................................................................2416.00606000000000
.................................................................................................................................................TCACTGGGCTTTGTTTA...............................................................................................................1714.00400000000004
..................................................................................................................................................CACTGGGCTTTGTTTATC.............................................................................................................1814.00404000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCATT........................................................................................................2313.00303000000000
.................................................................................................................................................TCACTGGGCTTTGTTTAT..............................................................................................................1813.00303000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.........................................................................................................2213.00303000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.........................................................................................................2213.00303000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT........................................................................................................2412.00202000000000
..............................................................................................GGGATACACACAGT-TCAGTTTTG...........................................................................................................................................................2312.00202000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCC..........................................................................................................2112.00202000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCACTT.......................................................................................................2512.00202000000000
...............................................................................................................................................CATCACTGGGCTTTGTTTATCTCA..........................................................................................................2412.00202000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCT..........................................................................................................2011.00101000000000
..................................................................................................................................................CACTGGGCTTTGTTTATCTCAAA........................................................................................................2311.00101000000000
................................................................................................................................................ATCACTGGGCTTTGTTTATCT............................................................................................................2111.00101000000000
...............................................................................................................................................CATCACTGGGCTTTGTTTATCTC...........................................................................................................2311.00101000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCA............................................................................................................2011.00101000000000
...................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.........................................................................................................2111.00101000000000
................................................................................................GATACACACAGT-TCAGTTTTG...........................................................................................................................................................2111.00101000000000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTTT..........................................................................................................2221.00201000100000
.................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGC........................................................................................................2411.00101000000000
droEre2
GCCTTTAAATA-------CTGCCGGATAATATCGATTTTCTTCTCGGAGCGATCTAAGGAAC------------------------CAATCCAT-GGATATCTAGTAT-TCAATTTAAT-A----AATGTTTT-------AG----------------------------------------------------------ATTAACTCACTGGTTTGGCGCATGTAACTCAGGGTGTTTTCATCGATTGGGAAGTAGCCCACAGTGGCTCCATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:49 PM