ID:

dwi-mir-318-1

 Coordinate:

scf2_1100000004902:74251-74321 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.6 -29.5 -29.4

Flybase annnotation

Antisense to intron [Dwil\GK11553-in]; pre_miRNA [Dwil\mir-318-1-RM]; Antisense to CDS [Dwil\GK11553-cds]; miRNA [Dwil\miR-318-1-RA]

No Repeatable elements found

mature

  1. dwi-mir-318-1  scf2_1100000004902:74256-74277 -
  2. dwi-mir-318-2  scf2_1100000004921:711-732 +
star

  1. dwi-mir-318-1  scf2_1100000004902:74294-74315 -
  2. dwi-mir-318-2  scf2_1100000004921:673-694 +

Sense Strand Reads

TGCCCGAGTGCCTGAGTGAATTTTGAATCAATTGTGCCAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGAGCATCACTGGGCTTTGTTTATCTCATAGAGGAGAAATGAATACAACTTACTGGGCTGGACAGGCAGGATTTGAAATCCTT

*****************************************..(((((..(((((((((((.((.(((((((((..(((((.......))).))..))))))))).)).)))))))))))...)))))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 M020

head

 V117

male body		 V118

embryo

 V119

head
..............................................................................................TCACTGGGCTTTGTTTATCTCA....................................................... 22 0 2 34649.50 69299 62196 6855 180 47 21
..............................................................................................TCACTGGGCTTTGTTTATCTC........................................................ 21 0 2 4661.00 9322 7069 2201 36 2 14
...............................................................................................CACTGGGCTTTGTTTATCTCA....................................................... 21 0 2 2730.00 5460 5458 2 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCT......................................................... 20 0 2 872.00 1744 1709 18 13 0 4
..............................................................................................TCACTGGGCTTTGTTTATCTCAT...................................................... 23 0 2 710.00 1420 1321 99 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTC........................................................ 20 0 2 313.00 626 626 0 0 0 0
........................................................GGATACACCAAGTTCAGTTTTG............................................................................................. 22 0 2 174.50 349 349 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTCA....................................................... 22 1 2 170.00 340 339 1 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTCA....................................................... 20 0 2 146.50 293 285 5 2 0 1
..............................................................................................TCACTGGGCTTTGTTTATCTCAA...................................................... 23 1 2 110.00 220 211 8 0 1 0
..............................................................................................TCACTGGGCTTAGTTTATCTCA....................................................... 22 1 2 71.00 142 142 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCT......................................................... 19 0 2 65.50 131 131 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAT...................................................... 22 0 2 61.50 123 123 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCT....................................................... 22 1 2 53.50 107 104 3 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCG....................................................... 22 1 2 50.50 101 27 74 0 0 0
..............................................................................................TCACTGGGCTTCGTTTATCTCA....................................................... 22 1 2 41.50 83 81 2 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCTCA....................................................... 23 1 2 39.00 78 77 1 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTCA....................................................... 19 0 2 36.00 72 72 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAC...................................................... 23 1 2 34.50 69 64 5 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATC.......................................................... 19 0 2 33.50 67 59 8 0 0 0
..............................................................................................TCACTGGGCCTTGTTTATCTCA....................................................... 22 1 2 25.50 51 43 8 0 0 0
..................................................................................................TGGGCTTTGTTTATCTCA....................................................... 18 0 2 23.00 46 46 0 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTC........................................................ 19 0 2 21.50 43 40 3 0 0 0
..............................................................................................TCACTGGGCTTTGCTTATCTCA....................................................... 22 1 2 20.50 41 36 5 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCCA....................................................... 22 1 2 19.50 39 33 5 1 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTCA....................................................... 23 1 2 19.00 38 38 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTCA....................................................... 23 0 2 17.50 35 35 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTC........................................................ 21 1 2 17.00 34 34 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATT..................................................... 24 1 2 16.00 32 29 3 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCTCA....................................................... 23 1 2 16.00 32 32 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAG...................................................... 23 1 2 15.50 31 31 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTCA....................................................... 22 1 2 14.50 29 26 3 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTCA....................................................... 22 1 2 14.50 29 25 3 1 0 0
..............................................................................................TCACTGGGCTCTGTTTATCTCA....................................................... 22 1 2 13.50 27 24 3 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCTCA....................................................... 22 1 2 13.00 26 24 2 0 0 0
..............................................................................................TCACCGGGCTTTGTTTATCTCA....................................................... 22 1 2 12.50 25 23 1 1 0 0
..............................................................................................TCACTGGGCTTTGTCTATCTCA....................................................... 22 1 2 11.50 23 19 4 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTCA....................................................... 22 1 2 11.00 22 19 2 0 1 0
..............................................................................................TCACTGGGCTTTGTTCATCTCA....................................................... 22 1 2 10.00 20 19 1 0 0 0
..............................................................................................GCACTGGGCTTTGTTTATCTCA....................................................... 22 1 2 10.00 20 20 0 0 0 0
..............................................................................................ACACTGGGCTTTGTTTATCTCA....................................................... 22 1 2 9.50 19 17 2 0 0 0
..............................................................................................TCACTGGGCTTTATTTATCTCA....................................................... 22 1 2 9.00 18 6 12 0 0 0
..............................................................................................TCACTGGGCTTTCTTTATCTCA....................................................... 22 1 2 8.50 17 8 9 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAA...................................................... 22 1 2 8.00 16 16 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCC....................................................... 22 1 2 8.00 16 14 2 0 0 0
..............................................................................................TCACTTGGCTTTGTTTATCTCA....................................................... 22 1 2 7.50 15 15 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTGATCTCA....................................................... 22 1 2 7.00 14 13 1 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCT....................................................... 21 1 2 7.00 14 14 0 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCTCA....................................................... 22 1 2 7.00 14 11 3 0 0 0
..............................................................................................TCACTGGGCTTTGGTTATCTCA....................................................... 22 1 2 6.50 13 6 7 0 0 0
..............................................................................................TCACTGGACTTTGTTTATCTCA....................................................... 22 1 2 6.50 13 13 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTGTCTCA....................................................... 22 1 2 6.50 13 11 1 0 1 0
.........................................................GATACACCAAGTTCAGTTTTG............................................................................................. 21 0 2 6.50 13 13 0 0 0 0
..............................................................................................TCACTGGGCCTTGTTTATCTC........................................................ 21 1 2 6.00 12 8 4 0 0 0
..............................................................................................TCACTGGCCTTTGTTTATCTCA....................................................... 22 1 2 6.00 12 12 0 0 0 0
..............................................................................................TCACTGGGCTGTGTTTATCTCA....................................................... 22 1 2 5.50 11 11 0 0 0 0
..............................................................................................TCACTGGGCTTCGTTTATCTC........................................................ 21 1 2 5.50 11 11 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCT......................................................... 20 1 2 5.50 11 11 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATC.......................................................... 18 0 2 5.50 11 11 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTAT........................................................... 18 0 2 5.00 10 10 0 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTCATT..................................................... 22 1 2 4.50 9 6 2 0 1 0
..............................................................................................TCACTGGGCTTTGTTTATCTT........................................................ 21 1 2 4.50 9 9 0 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCTC........................................................ 21 1 2 4.50 9 2 7 0 0 0
..............................................................................................TCACTGAGCTTTGTTTATCTCA....................................................... 22 1 2 4.50 9 8 1 0 0 0
...............................................................................................CACTGGGCTTTCTTTATCTCA....................................................... 21 1 2 4.50 9 9 0 0 0 0
..............................................................................................TCACTGGTCTTTGTTTATCTCA....................................................... 22 1 2 4.50 9 9 0 0 0 0
..............................................................................................TCACTGGGGTTTGTTTATCTCA....................................................... 22 1 2 4.50 9 5 4 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTAA....................................................... 22 1 2 4.50 9 9 0 0 0 0
...............................................................................................CACTGGGCTTTATTTATCTCA....................................................... 21 1 2 4.00 8 8 0 0 0 0
..............................................................................................TCACTGGGATTTGTTTATCTCA....................................................... 22 1 2 4.00 8 7 1 0 0 0
.......................................................GGGATACACCAAGTTCAGTTTTG............................................................................................. 23 0 2 4.00 8 8 0 0 0 0
..............................................................................................TCACTGGGCTTTGCTTATCTC........................................................ 21 1 2 4.00 8 5 3 0 0 0
..............................................................................................TCACTGGGCTTTATTTATCTC........................................................ 21 1 2 4.00 8 0 8 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCTC........................................................ 22 1 2 4.00 8 8 0 0 0 0
...............................................................................................CACTGGGCTTTTTTTATCTCA....................................................... 21 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACTGTGCTTTGTTTATCTCA....................................................... 22 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACCGGGCTTTGTTTATCTC........................................................ 21 1 2 3.50 7 4 3 0 0 0
..............................................................................................TCACTGGGCTATGTTTATCTCA....................................................... 22 1 2 3.50 7 7 0 0 0 0
..............................................................................................TCACTCGGCTTTGTTTATCTCA....................................................... 22 1 2 3.50 7 7 0 0 0 0
..............................................................................................TTACTGGGCTTTGTTTATCTCA....................................................... 22 1 2 3.50 7 6 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTGA....................................................... 22 1 2 3.50 7 6 1 0 0 0
..............................................................................................TCACTGGGCGTTGTTTATCTCA....................................................... 22 1 2 3.50 7 4 3 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTTA....................................................... 22 1 2 3.50 7 5 2 0 0 0
..............................................................................................TCACTCGGCTTTGTTTATCTC........................................................ 21 1 2 3.50 7 5 2 0 0 0
..............................................................................................TCACTGGGCTTTGTTAATCTCA....................................................... 22 1 2 3.00 6 6 0 0 0 0
............................................................................................CTTCACTGGGCTTTGTTTATCTCA....................................................... 24 1 2 3.00 6 6 0 0 0 0
................................................................................................TCTGGGCTTTGTTTATCTCA....................................................... 20 1 2 3.00 6 6 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTTTCTCA....................................................... 22 1 2 3.00 6 6 0 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTC........................................................ 18 0 2 3.00 6 6 0 0 0 0
................................................................................................ACTGGGCTTTGTTTATCT......................................................... 18 0 2 3.00 6 6 0 0 0 0
..............................................................................................TCACTAGGCTTTGTTTATCTCA....................................................... 22 1 2 3.00 6 5 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTAACTCA....................................................... 22 1 2 3.00 6 5 1 0 0 0
.....................................CAGACGGTTTCAATTTATG................................................................................................................... 19 0 2 3.00 6 6 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATTTCA....................................................... 22 1 2 3.00 6 5 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATGTCA....................................................... 22 1 2 3.00 6 5 1 0 0 0
...............................................................................................CACTGGGCTTTGTTTGTCTCA....................................................... 21 1 2 2.50 5 5 0 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCTC........................................................ 22 1 2 2.50 5 5 0 0 0 0
...............................................................................................CGCTGGGCTTTGTTTATCTCA....................................................... 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TGACTGGGCTTTGTTTATCTCA....................................................... 22 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATCTC........................................................ 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTTAGTTTATCT......................................................... 20 1 2 2.50 5 5 0 0 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTC........................................................ 22 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTTGGCTTTGTTTATCTC........................................................ 21 1 2 2.50 5 3 2 0 0 0
..............................................................................................TCTCTGGGCTTTGTTTATCTCA....................................................... 22 1 2 2.50 5 4 1 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCTC........................................................ 21 1 2 2.50 5 3 2 0 0 0
..............................................................................................TCACAGGGCTTTGTTTATCTCA....................................................... 22 1 2 2.50 5 3 2 0 0 0
........................................................GGATACACACAGTTCAGTTTTG............................................................................................. 22 2 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTACCTC........................................................ 21 1 2 2.50 5 5 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCA........................................................ 21 2 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTATATCTCA....................................................... 22 1 2 2.00 4 4 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCG....................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTA........................................................ 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGATTATCTCA....................................................... 22 1 2 2.00 4 3 1 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCCCA....................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACGGGGCTTTGTTTATCTCA....................................................... 22 1 2 2.00 4 3 1 0 0 0
............................................................................................GTTCACTGGGCTTTGTTTATCTCA....................................................... 24 2 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTAGTTTATCTC........................................................ 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTATATCTC........................................................ 21 1 2 2.00 4 3 1 0 0 0
..............................................................................................TAACTGGGCTTTGTTTATCTCA....................................................... 22 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATTTC........................................................ 21 1 2 2.00 4 3 1 0 0 0
..............................................................................................TCACTGCGCTTTGTTTATCTCA....................................................... 22 1 2 2.00 4 4 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTC........................................................ 21 1 2 2.00 4 4 0 0 0 0
................................................................................................ACTGGGCTTTGTTTATCTCAT...................................................... 21 0 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCC........................................................ 21 1 2 2.00 4 1 3 0 0 0
...............................................................................................CACTGGGCTTGGTTTATCTCA....................................................... 21 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATATCA....................................................... 22 1 2 2.00 4 4 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATA..................................................... 24 0 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGCGCTTTGTTTATCTC........................................................ 21 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCCCTGGGCTTTGTTTATCTCA....................................................... 22 1 2 1.50 3 0 0 3 0 0
..............................................................................................TCACTGGGCTTTGTTTATCACA....................................................... 22 1 2 1.50 3 2 1 0 0 0
...............................................................................................CACTGGGCTTTGCTTATCTCA....................................................... 21 1 2 1.50 3 3 0 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCT......................................................... 21 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCT......................................................... 20 1 2 1.50 3 3 0 0 0 0
...............................................................................................CACTGGGCCTTGTTTATCTCA....................................................... 21 1 2 1.50 3 3 0 0 0 0
................................................................................................ACTGGGCTTTGGTTATCTCA....................................................... 20 1 2 1.50 3 3 0 0 0 0
........................................................GGATACACCAAGTTCAGTTTT.............................................................................................. 21 0 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCGCA....................................................... 22 1 2 1.50 3 3 0 0 0 0
..............................................................................................TTACTGGGCTTTGTTTATCTC........................................................ 21 1 2 1.50 3 1 2 0 0 0
...............................................................................................CACTGGGCTTTGTTCATCTCA....................................................... 21 1 2 1.50 3 3 0 0 0 0
.......................................................TGGATACACCAAGTTCAGTTTTG............................................................................................. 23 1 2 1.50 3 3 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTCAT...................................................... 23 1 2 1.50 3 3 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTC........................................................ 22 0 2 1.50 3 3 0 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTCATT..................................................... 21 1 2 1.50 3 3 0 0 0 0
...............................................................................................CACTGGACTTTGTTTATCTCA....................................................... 21 1 2 1.50 3 3 0 0 0 0
...............................................................................................TCCTGGGCTTTGTTTATCTCA....................................................... 21 2 2 1.50 3 3 0 0 0 0
..............................................................................................TCATTGGGCTTTGTTTATCTCA....................................................... 22 1 2 1.50 3 3 0 0 0 0
...............................................................................................CAATGGGCTTTGTTTATCTC........................................................ 20 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCATTGGGCTTTGTTTATCTC........................................................ 21 1 2 1.00 2 1 1 0 0 0
...............................................................................................CACTGGGCTTTGTTTACCTCA....................................................... 21 1 2 1.00 2 2 0 0 0 0
.........................................................GATACACCAAGTTCAGTTTT.............................................................................................. 20 0 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTTT....................................................... 22 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCACA..................................................... 24 1 2 1.00 2 2 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCAG...................................................... 22 1 2 1.00 2 2 0 0 0 0
.................................................................................................CTGGGCTTTGTTTATCTCAT...................................................... 20 0 2 1.00 2 2 0 0 0 0
............................................................................................ACTCACTGGGCTTTGTTTATCTCA....................................................... 24 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCAATGGGCTTTGTTTATCTCA....................................................... 22 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTG........................................................ 21 1 2 1.00 2 2 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTCAT...................................................... 24 0 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCA......................................................... 20 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGCCTTTGTTTATCTC........................................................ 21 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTGTATCTCA....................................................... 22 1 2 1.00 2 2 0 0 0 0
............................................................................................CGTCACTGGGCTTTGTTTATCTCA....................................................... 24 1 2 1.00 2 2 0 0 0 0
............................................................................................ATTCACTGGGCTTTGTTTATCTCA....................................................... 24 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTCATCTC........................................................ 21 1 2 1.00 2 1 1 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCT......................................................... 21 0 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGGCTTCGTTTATCT......................................................... 20 1 2 1.00 2 2 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATCTCATT..................................................... 23 1 2 1.00 2 2 0 0 0 0
...............................................................................................CACCGGGCTTTGTTTATCTCA....................................................... 21 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGACTTTGTTTATCTC........................................................ 21 1 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGTTCTTTGTTTATCTCA....................................................... 22 2 2 1.00 2 2 0 0 0 0
................................................................................................TCAGGGCTTTGTTTATCTCA....................................................... 20 2 2 1.00 2 2 0 0 0 0
..............................................................................................TCACTGGTCTTTGTTTATCTC........................................................ 21 1 2 1.00 2 1 1 0 0 0
..............................................................................................ACACTGGGCTTTGTTTATCTC........................................................ 21 1 2 1.00 2 2 0 0 0 0
............................................................................................ACTCACTGGGCTTTGTTTATCTC........................................................ 23 2 2 1.00 2 2 0 0 0 0
...............................................................................................CACTGGCCTTTGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAGG..................................................... 24 2 2 0.50 1 1 0 0 0 0
..............................................................................................TTACTGGGCTTTGTTTATCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTGTTTATATCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAGTTCATTTTTG............................................................................................. 22 1 2 0.50 1 1 0 0 0 0
.................................................................................................CTGGGCTTTGTGTATCTCA....................................................... 19 1 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGGCTTTGCTTATCTCA....................................................... 20 1 2 0.50 1 1 0 0 0 0
..........................................................................................TTCATCACTGGGCTTTGTTTATCTCA....................................................... 26 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTAGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCAGTGGGCTTTGTTTATCTCA....................................................... 22 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCCCAA...................................................... 23 2 2 0.50 1 1 0 0 0 0
.........................................CGGTTTCAATTTATGGGA................................................................................................................ 18 0 2 0.50 1 1 0 0 0 0
.............................................................................................TTCACTGGTCTTTGTTTATCTC........................................................ 22 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATC.......................................................... 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATATCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGATTTGTTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAGTTCAGTTG............................................................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATG..................................................... 24 1 2 0.50 1 1 0 0 0 0
............................................................................................CCTCACTGGGCTTTGTTTATCTCA....................................................... 24 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTT........................................................ 21 2 2 0.50 1 0 1 0 0 0
..............................................................................................TCACTGGACTTTGTTTATCT......................................................... 20 1 2 0.50 1 0 0 0 0 1
............................................................................................GGTCACTGGGCTTTGTTTATCTCA....................................................... 24 2 2 0.50 1 1 0 0 0 0
............................................................................................AGTCACTGGGCTTTGTTTATCCCA....................................................... 24 3 2 0.50 1 1 0 0 0 0
...........................................................................................TACTCACTGGGCTTTGTTTATCTCA....................................................... 25 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTACCTCA....................................................... 22 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTCTTTATCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
.............................................................................................ATCACTGGGCTTTGTTCATCTCA....................................................... 23 1 2 0.50 1 1 0 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCT......................................................... 21 1 2 0.50 1 1 0 0 0 0
.............................................................................................CTCACTGGGCTTTGTTTATCTCAA...................................................... 24 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTCTTTATCTC........................................................ 21 1 2 0.50 1 0 1 0 0 0
..............................................................................................TCACTGGGGTTTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
............................................................................................TGTCACTGGGCTTTGTTTATCTC........................................................ 23 2 2 0.50 1 1 0 0 0 0
................................................................................................ACCGGGCTTTGTTTATCTC........................................................ 19 1 2 0.50 1 1 0 0 0 0
...........................................................................................TATTCACTGGGCTTTGTTTATCTCAT...................................................... 26 3 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGGCTTTTTTTATCTCA....................................................... 20 1 2 0.50 1 1 0 0 0 0
............................................................................................TTTCACTGGGCTTTGTTTATCTCA....................................................... 24 2 2 0.50 1 1 0 0 0 0
..........................................................................................CAAATCACTGGGCTTTGTTTATCTCA....................................................... 26 3 2 0.50 1 1 0 0 0 0
................................................................................................TCTGGGCTTTGTTTATCTC........................................................ 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTCGGCTTTGTTTATCTCAT...................................................... 23 1 2 0.50 1 0 1 0 0 0
.............................................................................................TTCACTGGGCTGTGTTTATCTCA....................................................... 23 2 2 0.50 1 1 0 0 0 0
........................................................................................CGAGCATCACTGGGCTTTGTTTATCTCA....................................................... 28 0 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAAATTCAGTTTTG............................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTCAA...................................................... 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCATTGTTTATCTC........................................................ 21 1 2 0.50 1 0 1 0 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCT......................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGTGCTTTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGGCTTTGTTTACCTC........................................................ 19 1 2 0.50 1 1 0 0 0 0
............................................................................................TTTCACTGGGCTTTGTTTATCTCAT...................................................... 25 2 2 0.50 1 1 0 0 0 0
...........................................................................................CTATCACTGGGCTTTGTTTATCTCA....................................................... 25 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGGTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
...........................................................TACACCAAGTTCAGTTTTGTCG.......................................................................................... 22 0 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTGTGTTTATCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTGTCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTTTTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACGGGGCTTTGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCATTGTTTATCTCA....................................................... 22 1 2 0.50 1 0 1 0 0 0
........................................................................................TCATCATCACTGGGCTTTGTTTATCTCA....................................................... 28 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
.............................................................................................TTAACTGGGCTTTGTTTATCTCA....................................................... 23 2 2 0.50 1 1 0 0 0 0
...........................................................................................TGGTCACTGGGCTTTGTTTATCTCAT...................................................... 26 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGTGCTTTGTTTATCTCT....................................................... 22 2 2 0.50 1 1 0 0 0 0
...........................................................................................AACTCACTGGGCTTTGTTTATCTC........................................................ 24 3 2 0.50 1 1 0 0 0 0
...........................................................................................TGGTCACTGGGCTTTGTTTATCTCA....................................................... 25 3 2 0.50 1 1 0 0 0 0
...............................................................................................CGCTGGGCTTTGTTTATCTC........................................................ 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCTCAA...................................................... 23 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGAGCTTTGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................................................................TGGGCTTTGTTGATCTCAT...................................................... 19 1 2 0.50 1 1 0 0 0 0
............................................................................................GATCACTGGGCTTTGTTTATCTCA....................................................... 24 1 2 0.50 1 1 0 0 0 0
...........................................................................................ATTTCACTGGGCTTTGTTTATCTC........................................................ 24 3 2 0.50 1 1 0 0 0 0
...........................................................................................AGCTCACTGGGCTTTGTTTATCTCA....................................................... 25 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTGTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCACT..................................................... 24 2 2 0.50 1 0 1 0 0 0
.............................................................................................ATCACTGGGCTTTGTTTATCTCT....................................................... 23 1 2 0.50 1 1 0 0 0 0
............................................................ACACCAAGTTCAGTTTTG............................................................................................. 18 0 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTC........................................................ 21 1 2 0.50 1 0 1 0 0 0
..............................................................................................TCACTGGGCTTTGTTTGTCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGACTTTGTTTATCTCA....................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTGATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCAAA..................................................... 24 1 2 0.50 1 1 0 0 0 0
..........................................................................................TACATCACTGGGCTTTGTTTATCTCA....................................................... 26 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTGTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..........................................................................................CGATTCACTGGGCTTTGTTTATCTCA....................................................... 26 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTAGTTTATCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATCTCATTT.................................................... 25 2 2 0.50 1 1 0 0 0 0
...........................................................................................ATTTCACTGGGCTTTGTTTATCTCA....................................................... 25 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACAGGGCTTTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
.......................................................TGGATACACCGAGTTCAGTTTTG............................................................................................. 23 2 2 0.50 1 1 0 0 0 0
.............................................................................................TTCACTGGGCTTTGTTTATCTCAT...................................................... 24 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTCTCA......................................................... 20 2 2 0.50 1 1 0 0 0 0
................................................................................................ACTGGGCTTTGTCTATCTCA....................................................... 20 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTCGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTCTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCGCTGGGCTTTGTTTATCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGTCTTTGTTTATCTCAT...................................................... 22 1 2 0.50 1 1 0 0 0 0
...........................................................................................AACTCACTGGGCTTTGTTTATCTCA....................................................... 25 3 2 0.50 1 1 0 0 0 0
................................................................................................ACTTGGCTTTGTTTATCTC........................................................ 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGAGCTTTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
........................................................GGATACACCAACTTCAGTTTTG............................................................................................. 22 1 2 0.50 1 1 0 0 0 0
.............................................................................................ATCACTGGGCTGTGTTTATCTCA....................................................... 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATG.......................................................... 19 1 2 0.50 1 1 0 0 0 0
.......................................................GGGATACACCAAGTTCAGTTTT.............................................................................................. 22 0 2 0.50 1 1 0 0 0 0
..............................................................................................TCACCCGGCTTTGTTTATCTCAA...................................................... 23 3 2 0.50 1 1 0 0 0 0
..........................................................................................ATTATCACTGGGCTTTGTTTATCTCA....................................................... 26 2 2 0.50 1 1 0 0 0 0
.........................................................GATACACCAAGTTCCGTTTTG............................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTGGTTTATCTCT....................................................... 22 2 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTCTGTTTATCTCAC...................................................... 23 2 2 0.50 1 1 0 0 0 0
............................................................................................TGTCACTGGGCTTTGTTTATCTCA....................................................... 24 2 2 0.50 1 1 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCTCAC...................................................... 23 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGTCTTTGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTATATC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTAGGCTTTGTTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
...............................................................................................CATTGGGCTTTGTTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................CCACTGGGCTTTGTTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTAGGCTTTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTATTTATCTCAA...................................................... 22 2 2 0.50 1 1 0 0 0 0
...........................................................TACACCAAGTTCAGTTTTGTCGCA........................................................................................ 24 0 2 0.50 1 1 0 0 0 0
.......................................................AGGATACACCAAGTTCAGTTTTG............................................................................................. 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCCCTGGGCTTTGTTTATCTC........................................................ 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACAGGGCTTTGTTTATCT......................................................... 20 1 2 0.50 1 1 0 0 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTCAA...................................................... 24 2 2 0.50 1 1 0 0 0 0
.............................................................................................GTCACTGGGCTTTGTTTATCTCT....................................................... 23 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTCTTTATCTC........................................................ 20 1 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGTTTTGTTTATCTCAT...................................................... 23 1 2 0.50 1 1 0 0 0 0
........................................................GGATGCACCAAGTTCAGTTTTG............................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..........................................................................................TACCTCACTGGGCTTTGTTTATCTCA....................................................... 26 3 2 0.50 1 1 0 0 0 0
..............................................................................................TCACTGGGCTTTGTTTTTTTCA....................................................... 22 2 2 0.50 1 1 0 0 0 0
...............................................................................................CACTGGGCTTTGGTTATCTCA....................................................... 21 1 2 0.50 1 1 0 0 0 0

Anti-sense strand reads

ACGGGCTCACGGACTCACTTAAAACTTAGTTAACACGGTCTGCCAAAGTTAAATACCCTATGTGGTTCAAGTCAAAACAGCGTAAGGTGCTCGTAGTGACCCGAAACAAATAGAGTATCTCCTCTTTACTTATGTTGAATGACCCGACCTGTCCGTCCTAAACTTTAGGAA

****************************************..(((((..(((((((((((.((.(((((((((..(((((.......))).))..))))))))).)).)))))))))))...)))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total V119

head

 V117

male body		 M045

female body
..................................ACGGACTGCCACAGTTAAAT..................................................................................................................... 20 2 1 1.00 1 1 0 0
................................................................GTTCAAGTCAAAACAGCGTAAGGTGC................................................................................. 26 0 2 0.50 1 0 1 0
....................................................................................................................................................CTGTTCGTCCTAAACTTG..... 18 2 4 0.25 1 0 1 0
................................GCGCGGTCTGCCAAAGTTC........................................................................................................................ 19 3 5 0.20 1 0 0 1
...................................................................................................................................................CCGGTCCCTCCTGAACTTT..... 19 3 20 0.10 2 0 0 2
................................................................GTTCAAGTCAAACCGGTGTA....................................................................................... 20 3 20 0.05 1 0 0 1
....................................................................................................................................................GTGTCCGTCCTAAGCTTG..... 18 3 20 0.05 1 0 0 1
....................................................................................................................................................CCGTCCGCCCTAAGCTTT..... 18 3 20 0.05 1 0 0 1
..................................ATGGACTGCCAACGTTAAA...................................................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:74201-74371 - dwi-mir-318-1 Known_mirbase TG------CC-CGAGTGC-------------CT-GAGTGAA----------TTTTGA-------ATC-AA--------TTGTG-----------------------------------------------C-----------------------CAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGA---GCATCACTGGGCTTTGTTTATCTCATAGAGGAGAAATGAATACAACTTACTGGGCTGGACAGGCAGGATTTGAAATCCTT
droVir3 scaffold_13047:1194284-1194451 + dvi-mir-318 Known_mirbase GG------TT-CGGGGAG--------C----AGTTTGAGAA----------TTTTTT-----------AG--------AAGTG-----------------------------------------------------------------------ATTTGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCAACTTACAGGGCTGGACAAGCATGACTTAAAGTCTTC
droMoj3 scaffold_6540:5225291-5225463 + dmo-mir-318 Known_mirbase CG------GT-CGCGTTG-------------CGGTTTTGAACTTGAG----A-TT----------TG-AA--------ATGTG-----------------------------------------------A-----------------------TTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGGACAGGCACGACTTGAAGTCTTC
droGri2 scaffold_14906:5077255-5077442 - dgr-mir-318 Known_mirbase CA------CC-C-AG--------------------------------------------------------------------CCGGTTCGTCGTGGCATCTCGTTCAGTTTAGTTCGGCTCTGTTTGTGA-----------------------TTTCGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCAACTTACCGGACTGGACAGGCACGACTTGAAGTCTTC
dp5 2:7233331-7233484 - dps-mir-318 Known_mirbase GGCGA---TT-CGAGTGAGTGAATCCCT-----------------------------------------------------------------------------------------------TTCTGTGATGGTGCGTGTGAAACGTGTGCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT---------------------------------
droPer2 scaffold_0:1094013-1094161 - dpe-mir-318 Known_mirbase TG------AG-TGAATCC--------CTTTCCGGT-----------------TCT------------------------------------------------------------------------GTGATGGTGCGTGCGAAACGTGTGCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT---------------------------------
droAna3 scaffold_13340:867194-867343 - dan-mir-318 Known_mirbase TG------C--CAAGTGT-------------C--GAAAGCA----------TCCTGCCTCCTGCATC-CTCCTTCCCCAGGGT-----------------------------------------------------------------------CCTCCGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT-GCGA---GCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTT--------------------------------
droBip1 scf7180000394085:131903-132052 + TG------C--CCAGTG---------------TTGAAATCA----------TCCTGCCTCCCGCATC-GATCTTCCCCAGGGT-----------------------------------------------------------------------CCTCCGGTTTCAAATTATGGGATACACACAGTTCAGTTTTGTCACTTTT-GCGA---ACATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTT--------------------------------
droKik1 scf7180000302475:1425857-1425983 + T----------CAAGTG--------------------TTAG----------TCCTAG-------AAG-GA--------CCCACCC-------------------------------------AG-------------------------TG---CCCCCGATTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTTTTCGATCCTCATCACTGGGCTTTGTTTATCTCATAAAAGCGAAAT-------------------------------------------
droFic1 scf7180000453800:2313635-2313777 + TGTGAATATC-TGTTTGA-------------TTTGAATTGA----------TCCTGC-------AGG-GAT-----G-AAGGA-----------------------------------------------------------------------TCCACGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTC--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------
droEle1 scf7180000490995:508428-508567 - TGCGAATAGC-CGAGTGC-------------TTTAGAAGAA----------TCCTGC-------ACGGAA--------AAGGA-----------------------------------------------------------------------CTCTCGGTTTCAATTTATGGGATACACACAGTTCAGTCTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGA--GAAATTTGTTCAAC----------------------------------
droRho1 scf7180000777158:16330-16465 - TA------TC-CGAGTGC-------------TTTGGATGAA----------TCCTGG-------AATTGA--------AGGGG-----------------------------------------------------------------------ACCCCGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------
droBia1 scf7180000302402:8322920-8323055 + TG------TCTTGAGTGC-------------CTTGAGTGAA----------TCCTGC-------AGG-AA--------GGGGT-----------------------------------------------------------------------CCCCCGGTTTCAGTTTATGGGATACACACAGTTCAGTCGTGTCGCATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------
droTak1 scf7180000415380:1406026-1406178 - TGCGAGTATC-CGAGTGC-------------TTTTTG---G------TGAATCCTGA-------AGG-AA--------AAGGTCC-------------------------------------AGTTTAAGA-----------------------AAAAGGATTTCAGTTTATGGGATATACACAGTTCAGTCTTGTCGCCTTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------
droEug1 scf7180000409692:710197-710332 + TA------TT-TAAGTGC-------------CTTGAATGAA----------TTCTGT-------AAGGAA--------TACGA-----------------------------------------------------------------------CCCCTGGTTTCAGTTTATGGGATACACACAGCTCAGTCTTGTCACATGT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------
dm3 chr3R:6233974-6234108 + dme-mir-318 Known_mirbase TA------TC-CGAGTGC-------------CTTGCGTGAA----------TCCTGG-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------
droSim2 3r:14842737-14842877 - dsi-mir-318 Known_mirbase TGCGACTATC-CGAGTGC-------------CTTGCGTGAA----------TCCTGT-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--TAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------
droSec2 scaffold_0:15709306-15709446 - dse-mir-318 Known_mirbase TGCGACTATC-CGAGTGC-------------CTTGCGTGAA----------TCCTGT-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------
droYak3 3R:10262489-10262623 + dya-mir-318 Known_mirbase TA------TC-CGAGTGC-------------CTAGCGTGTA----------TCCTGG-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCACTA--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------
droEre2 scaffold_4770:15383891-15384025 - der-mir-318 Known_mirbase TA------TC-CGAGTGC-------------TAGGCGTGTA----------TCCTGG-------CTG-AA--------GAGGT-----------------------------------------------------------------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TG------CC-CGAGTGC-------------CT-GAGTGAA----------TTTTGA-------ATC-AA--------TTGTG-----------------------------------------------C-----------------------CAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGA---GCATCACTGGGCTTTGTTTATCTCATAGAGGAGAAATGAATACAACTTACTGGGCTGGACAGGCAGGATTTGAAATCCTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22234649.50692996855621961804721
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................2124661.0093222201706936214
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2122730.00546025458000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................202872.0017441817091304
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................232710.001420991321000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................202313.006260626000
.............................................................................................................................................................................GGATACACCAAGTTCAGTTTTG................................................................................................222174.503490349000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................202146.502935285201
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................232110.002208211010
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................19265.501310131000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................22261.501230123000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................22253.501073104000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22250.501017427000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19236.0072072000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................23234.5069564000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................19233.5067859000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18223.0046046000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19221.5043340000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................23217.5035035000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................24216.0032329000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23215.5031031000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................2228.0016016000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................2228.0016214000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................2127.0014014000
..............................................................................................................................................................................GATACACCAAGTTCAGTTTTG................................................................................................2126.5013013000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................1825.5011011000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................1825.0010010000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT.....................................................2224.50926010
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................2124.50909000
............................................................................................................................................................................GGGATACACCAAGTTCAGTTTTG................................................................................................2324.00808000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................1823.00606000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................1823.00606000
..........................................................................................................................................................CAGACGGTTTCAATTTATG......................................................................................................................1923.00606000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA........................................................2122.00404000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG.......................................................2122.00404000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2122.00404000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................2122.00404000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................2421.50303000
.............................................................................................................................................................................GGATACACCAAGTTCAGTTTT.................................................................................................2121.50303000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2221.50303000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATT.....................................................2121.50303000
..............................................................................................................................................................................GATACACCAAGTTCAGTTTT.................................................................................................2021.00202000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2221.00202000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2221.00202000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT......................................................2021.00202000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................2121.00202000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT......................................................2421.00202000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2021.00202000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT.........................................................2121.00202000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT.....................................................2321.00202000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG.....................................................2420.50101000
..............................................................................................................................................................CGGTTTCAATTTATGGGA...................................................................................................................1820.50101000
.............................................................................................................................................................................GGATACACCAAGTTCAGTTG..................................................................................................2020.50101000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG.....................................................2420.50101000
.............................................................................................................................................................................................................CGA---GCATCACTGGGCTTTGTTTATCTCA.......................................................2820.50101000
................................................................................................................................................................................TACACCAAGTTCAGTTTTGTCG.............................................................................................2220.50101000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACT.....................................................2420.50110000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCT.......................................................2320.50101000
.................................................................................................................................................................................ACACCAAGTTCAGTTTTG................................................................................................1820.50101000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT....................................................2520.50101000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATG..........................................................1920.50101000
............................................................................................................................................................................GGGATACACCAAGTTCAGTTTT.................................................................................................2220.50101000
................................................................................................................................................................................TACACCAAGTTCAGTTTTGTCGCA...........................................................................................2420.50101000
droVir3
GG------TT-CGGGGAG--------C----AGTTTGAGAA----------TTTTTT-----------AG--------AAGTG-----------------------------------------------------------------------ATTTGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCAACTTACAGGGCTGGACAAGCATGACTTAAAGTCTTCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................2212224776.0022247764350252493034295106439225671166216965213291212406698768592811329646661334602011105712315035993511671447951841021198658841505000000000000001106060493111356152904954219171631324630834818538120994626845528238320287318619676
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................211882154.0088215441485580902578109619975116671311608313662211254675143319605865868821867629931316972714329720840100000000000000114830017283122834989913158519163228980849975613829613716810257271840906
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................23135988.0035988068870405113610320310200204025612351157710962946341856153832536586000000000000000001300002210252191113433040812459270835503622118233834
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................20129926.0029926422265406293416356111808662183010111452411659240830473274193171481479185361046541000000000000000000230111344263113144461573461937863054103930216208
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2116544.006544004789030225013011000000000100269163188158200002001046000000000000000000000006132100017824213117415117900001
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................2015837.00583700263026672911960840030201146012464402805667803001010101247290000000000000000010000010926400024935620926024930300000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................2315394.0053940117501170145026011000120001111150334238579539300113102236000000000000000000010002017532842141444625528636140833163
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................1913952.00395211314001805254054025012000001100233112107150811100060031283200000000000000000330020159751004105073042224352540021214
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................2212434.002434215041694871120970000002075004173614302600100400006207000000000000000002000006901033342527583601003
.............................................................................................................................................................................GGATACACCAAGTTCAGTTTTG................................................................................................2212114.002114001020140150000000000000000227231471150000000000500000000000000000000000015522400031429611017622216700000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................2212011.002011129006621281500320000002023105210166106801000010011252000000000000000000300000479400016311511810317513301279
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................2211725.0017250131905427002401400000000020037541251540001000000108100000000000000000100000167700022920614311716425101112
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................1911335.001335002401702406407400000000100024402737510000040000500000000000000000001001000280001452129312613016200000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................2011117.0011170052804060506000000000000241415100000000000700000000000000000000000002000931106567869100020
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................241956.0095600120110401010000001000001233225373100000000042100000000000000000000009183900010312989871169800010
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT.....................................................221710.0071000304190100000000000000617444390000000000141000000000000000000000001730000988468691119000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................191705.0070500480401720200000000000200353215715100000000004600000000000000000000000082800053622941303800001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................181437.004370028080260203000000000100347826603200000330105300000000000000000000000093800056828200001
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................181332.003320032011040040001000000010013241023190000000000320000000000000000000000010370001835106132000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................231325.0032500170311400010000001001006181437600000000000160000000000000000000000007110002922919162200001
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191251.00251002270001000000000000000013461000000000050000000000000000000000000100000011000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................211216.002160090516200000000000000031613375600000000008000000000000000000000000113800023121200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................211212.002120123080601601100000000000029511500000010002400000000000000000000000008000131713816900114
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................221171.0017100930200000000000000000016110110000000000200000000000000000000000047000453471100000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................231170.00170007600020000000000000000141230000000000000000000000000000000000605400006212001000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................181151.001510011050100110900000000010013141614120000000000280000000000000000000000001500010000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA.....................................................221148.001480000302000000000000000023322180000000000200000000000000000000000011230001011610111000100
.........................................................................................................................................................................TATGGGATACACCAAGTTCAGT....................................................................................................221140.00140003030130170100000000000086414230000000000200000000000000000000000055000312462900000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC.....................................................241133.00133001040400000000000000002323110000010000400000000000000000000000370200081747111200000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................181129.0012900400060705000000000000111330000000000200000000000000000000000300100072011471600000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................211127.00127005030208090000000000003223000000000004000000000000000000000001200000141188131401131
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGC....................................................................241105.00105001000000000000000000000010200000000001000000000000000000000002010008151712182700000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23167.006700170100000000000000000014083000000000020000000000000000000000002400055044700000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCT...................................................................25153.005300401020100000000000000016158000000000010000000000000000000000002000013101600000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTT.................................................................27152.005200801020100000000000000142116000000000030000000000000000001000001000011800100000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................22151.005100400000100000000000000100000000000000000000000000000000000000260000053425000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................20149.00490012000001000000000000002113300000000001400000000000000000000000120000000000000000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTT..................................................................26144.004400500010200000000000000022104000000000010000000000000000003000000000013313300000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................24142.00420000001000000000000000014268000000000000000000000000000000000000200084032100000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATA.....................................................21140.00400000200010100000000000001146000000000010000000000000000000000001000025542400000
...........................................................................................................................................................................................................................GGGCTTTGTTTATCTCA.......................................................17139.0039000000000000000000000000000000000000000000000000000000000000000102900000000000000
............................................................................................................................................................................GGGATACACCAAGTTCAGTTTTG................................................................................................23139.00390000000000000000000000000012000000000000000000000000000000000000000038759400000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATT.....................................................21136.00360000002010000000000000021062000000000020000000000000000000000000300024434000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTC........................................................17135.003500000000000000000000000000000000000000000000000000000000000000350000000000000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCATAAG...................................................22133.00330010000010100000000000025188000000000000000000000000000000000000200000011200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTG................................................................28132.00320050100000000000000000014271000000000010000000000000000000000014000004000100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................21130.00300030000020200000000000001010000000000000000000000000000000000000000046312300200
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGG......................................................................22130.003000601000000000000000000002220000000000000000000000000000000000051200000000000000
...........................................................................................................................................................................TGGGATACACCAAGTTCAGTTT..................................................................................................22129.002900300000000000000000000011109000000000000000000000000000000000001400000000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................20128.00280100202010000000000000055121000000000030000000000000000000000000100013000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCC.......................................................20124.00240000705000200000000000080000000000000020000000000000000000000000000000000000000
.............................................................................................................................................................................GGATACACCAAGTTCAGTTTTGTCAGATG.........................................................................................29123.002300000000000000000000000000000000000000000000000000000000000000000000710211200000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22122.002200190000000000000000000000011000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT......................................................20122.00220020000000000000000000012012000000000000000000000000000000000000100014122300000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG.....................................................24121.00210000000000000000000000010000000000000000000000000000000000000000000043321700000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT.....................................................24120.00200020000000000000000000000133000000000030000000000000000000000001000030003100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................21120.00200010001000000000000000001254000000000030000000000000000000000000200010000000000
.............................................................................................................................................................................GGATACACCAAGTTCAGTTTT.................................................................................................21117.00170020001000000000000000000042000000000000000000000000000000000002600000000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21117.001700160000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATC.....................................................23116.001600000000000000000000000000000000000000000000000000000000000000160000000000000000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGG.....................................................................23116.00160030100000000000000000003113000000000000000000000000000000000003000000001000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCCA......................................................23116.00160000304000000000000000030010000000000050000000000000000000000000000000000000000
..............................................................................................................................................................................GATACACCAAGTTCAGTTTTG................................................................................................21115.00150020000000000000000000001010000000000000000000000000000000000000100010313200000
.................................................................................................................................................................................ACACCAAGTTCAGTTTTG................................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000014005500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTA............................................................17115.00150000000000000000000000000000000000000000000000000000000000000071700000000000000
...............................................................................................................................................................................ATACACCAAGTTCAGTTTTG................................................................................................20114.00140000001000000000000000001011000000000000000000000000000000000007000001020000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATA..........................................................19114.00140040001000000000000000021112000000000020000000000000000000000000000000000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT....................................................25113.00130000200000000000000000000331000000000000000000000000000000000004000000000000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCT.........................................................17112.001200000000000000000000000000000000000000000000000000000000000000111000000000000000
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA.......................................................24112.00120040000000000000000000001021000000000000000000000000000000000002100000000100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT....................................................23112.00120000000000000000000000000041000000000000000000000000000000000003200000002000000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTGT...............................................................29111.00110000100000000000000000000002000000000000000000000000000000000051200000000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG.....................................................24111.00110000000000000000000000000000000000000000000000000000000000000010100002111400000
............................................................................................................................................................................................................................GGCTTTGTTTATCTCAT......................................................17111.00110000000000000000000000000000000000000000000000000000000000000003800000000000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCAT......................................................19111.00110010001000000000000000002121000000000000000000000000000000000001000010000100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATT..........................................................19111.00110040100000000000000000010011000000000030000000000000000000000000000000000000000
..........................................................................................................................................................................ATGGGATACACCAAGTTCAGTT...................................................................................................22110.00100000000010000000000000010122000000000000000000000000000000000000000000030000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................18110.00100090000000000000000000000000000000000000000000000000000000000000000000000100000
droMoj3
CG------GT-CGCGTTG-------------CGGTTTTGAACTTGAG----A-TT----------TG-AA--------ATGTG-----------------------------------------------A-----------------------TTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGGACAGGCACGACTTGAAGTCTTCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22190827.009082789758767886901
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................21111568.001156811351028239157
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2117938.007938793800000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................2317421.0074217397032217
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2015279.005279511603729097
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................2011004.001004100400000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................221675.0067567500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................231631.0063162500114
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191424.0042442400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................221368.0036836201104
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201322.0032232100001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................191195.0019518801303
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................241118.0011811700001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................18196.00969400101
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................21188.00888800000
.............................................................................................................................................................................GGATACACTAAGTTCAGTTTTG................................................................................................22175.00757300020
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................23175.00757300020
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................23166.00666600000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................21156.00565600000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22154.00545400000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19145.00454500000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19137.00373700000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21131.00313100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT.....................................................22130.00302900001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22129.00292700002
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23128.00282800000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18124.00242400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22119.00191711000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA.....................................................22116.00161600000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT.....................................................23116.00161600000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................18113.00131300000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................21112.00121200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................24111.00111100000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................18110.00101000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT........................................................2018.008800000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT......................................................2018.008800000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2218.008800000
...........................................................................................................................................................................TGGGATACACTAAGTTCAGTTT..................................................................................................2217.007700000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2017.007700000
..............................................................................................................................................................................GATACACTAAGTTCAGTTTTG................................................................................................2117.007700000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT......................................................2417.007700000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC......................................................2216.006600000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATT.....................................................2116.006600000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2216.006600000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC.....................................................2415.005500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................2015.005500000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCT...................................................................2515.005500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................2115.005500000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................1815.005500000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATA.....................................................2314.004400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT....................................................2514.004400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATT..........................................................1914.004400000
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA.......................................................2414.004400000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT.........................................................2114.004400000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCAT......................................................1913.003300000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGC....................................................................2412.002100001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATA..........................................................1912.002200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTGT...............................................................2912.002200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG.........................................................2012.002200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGG.....................................................................2312.002200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA....................................................2512.002200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG.....................................................2412.002200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTT.................................................................2712.002200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGG......................................................................2212.002200000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG.......................................................2112.002200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTG................................................................2812.002200000
...................................................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGA....................................................................2412.002200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT.....................................................2412.002100001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAA...........................................................1811.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA........................................................2111.001000001
............................................................................................................................................................................GGGATACACTAAGTTCAGTTTT.................................................................................................2211.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTTT...................................................2611.001100000
............................................................................................................................................................................GGGATACACTAAGTTCAGTTTG.................................................................................................2211.001100000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2211.001100000
.............................................................................................................................................................................GGATACACTAAGTTCAGTTTT.................................................................................................2111.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG....................................................2511.001100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT....................................................2311.001100000
droGri2
CA------CC-C-AG--------------------------------------------------------------------CCGGTTCGTCGTGGCATCTCGTTCAGTTTAGTTCGGCTCTGTTTGTGA-----------------------TTTCGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCAACTTACCGGACTGGACAGGCACGACTTGAAGTCTTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22174.0074722
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................21113.0013130
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2018.00880
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................2315.00550
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................2213.00321
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................2012.00220
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2112.00220
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................2011.00110
dp5
GGCGA---TT-CGAGTGAGTGAATCCCT-----------------------------------------------------------------------------------------------TTCTGTGATGGTGCGTGTGAAACGTGTGCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT---------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22164749.006474917422703010126722335341
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................21112335.001233515102080214162076112
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2015099.0050992487000021720440
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2113906.00390603867000103800
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................201999.00999099700000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231496.0049603030000019300
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................221482.004822458000002200
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191405.00405040500000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201273.002730183001018800
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................231273.002730183000009000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................191173.001730132000004100
.............................................................................................................................................................................GGATGCACCAAGTTCAGTTTTG................................................................................................221145.00145014200000300
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................21176.007607300000300
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19150.005004400000600
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................23147.0047036000001100
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21146.004604600000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19143.004303700000600
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................18139.0039025000001400
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................24126.002602200000400
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................22126.002602600000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18126.002602400000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTT.............................................................16125.002500000002500
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23124.002402400000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22121.002101900000200
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................18119.001901900000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22113.001301300000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT........................................................20111.001101100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................21110.00100800000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................23110.00100600000400
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................18110.001001000000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................1819.0090900000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2219.0090300000420
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................2218.0080600000110
..............................................................................................................................................................................GATGCACCAAGTTCAGTTTTG................................................................................................2118.0080800000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT.........................................................2117.0070700000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG.....................................................2416.0060000000600
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2215.0050500000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGAG.....................................................2415.0050000000500
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2014.0040400000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTAG.....................................................2414.0040000000400
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA.......................................................2414.0040200000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT.....................................................2413.0030000000300
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................2013.0030300000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................2113.0030200000100
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTA......................................................2313.0030200000100
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATC.....................................................2213.0030000000300
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................2413.0030000000300
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTA............................................................1713.0030000000300
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAA......................................................2412.0020000000200
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................2112.0020200000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG.....................................................2412.0020000000200
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCG.......................................................2012.0020200000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG.......................................................2112.0020200000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2212.0020200000000
...................................................................................................................................................................................................TCACATTT--CGA---GCATCACTGGGCTT..................................................................2512.0020000000200
...................................................................................................................................................................................................TCACATTT--CGA---GCATCACTGGGCTTTG................................................................2712.0020000000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATA..........................................................1912.0020200000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAACC..................................................2712.0020000000200
.............................................................................................................................................................................GGATGCACCAAGTTCAGTTTT.................................................................................................2112.0020200000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG.....................................................2412.0020000000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATT..........................................................1921.5030200000100
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCT.......................................................2011.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA....................................................2511.0010000000100
.........................................................................................................................................................TCTTTTGGTTTCAATTTATG......................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG....................................................2511.0010100000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC......................................................2211.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTT..............................................................1511.0010000000100
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTA........................................................2011.0010100000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT......................................................2011.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATGTT...................................................2611.0010000000100
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC.......................................................2111.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAATT..................................................2711.0010000000100
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCT.........................................................2211.0010000000100
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATAGCG..................................................2511.0010000000100
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATAA.........................................................2011.0010100000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCAA......................................................1911.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTC......................................................2311.0010100000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTGT.....................................................2411.0010000000100
droPer2
TG------AG-TGAATCC--------CTTTCCGGT-----------------TCT------------------------------------------------------------------------GTGATGGTGCGTGCGAAACGTGTGCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT---------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22137016.00370163936942014156
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................2115167.0051671251340588
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2113242.003242032420000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2011409.001409013940645
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................201434.0043404340000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231357.0035703570000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201155.0015501550000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................231129.0012901280100
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................221119.0011901190000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191113.0011301130000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22182.00820820000
.............................................................................................................................................................................GGATGCACCAAGTTCAGTTTTG................................................................................................22160.00600600000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................19141.00410410000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................22132.00320320000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19122.00220220000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22118.00180180000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................23117.00170170000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21116.00160160000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19116.00160160000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23114.00140140000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22111.00110110000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................21110.00100100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................2318.008080000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................1818.008080000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................2417.007070000
..............................................................................................................................................................................GATGCACCAAGTTCAGTTTTG................................................................................................2115.005050000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2114.004040000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................1814.004040000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................1814.004040000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2014.004040000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................1814.004040000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2213.003030000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC.......................................................2112.002020000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA......................................................2312.002020000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................2112.002020000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT.....................................................2411.001010000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCT.......................................................1911.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG.....................................................2411.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................2411.001010000
................................................................................................................................................................................TGCACCAAGTTCAGTTTTG................................................................................................1911.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2211.001010000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC......................................................2211.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................2011.001010000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................1811.001010000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT.....................................................2311.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGT.....................................................2411.001010000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................2111.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGC......................................................2311.001010000
droAna3
TG------C--CAAGTGT-------------C--GAAAGCA----------TCCTGCCTCCTGCATC-CTCCTTCCCCAGGGT-----------------------------------------------------------------------CCTCCGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT-GCGA---GCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTT--------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22123669.00236692364932348
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................2115922.005922591500124
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2013654.003654364610034
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2111938.001938193800000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231886.0088688600000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................201508.0050850800000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191295.0029529500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................221197.0019719700000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................191138.0013813700001
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201116.0011611600000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................22187.00878700000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................23186.00868600000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22172.00727200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................23129.00292900000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19125.00252500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................18125.00252500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................24125.00252500000
.............................................................................................................................................................................GGATACACACGGTTCAGTTGTG................................................................................................22124.00242400000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19124.00242400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................21222.00444400000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18120.00202000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23116.00161600000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21115.00151500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22114.00141400000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................18113.00131300000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................18113.00131300000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................2319.009900000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................2216.006600000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT.....................................................2315.005500000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................1815.005500000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2215.005500000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................2114.004310000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2114.004400000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC.......................................................2114.004400000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG.......................................................2114.004400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................2013.003300000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC.....................................................2413.003300000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT......................................................2013.003300000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2232.678800000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2012.002200000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................2112.002200000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATT..........................................................1931.675500000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT........................................................2021.503300000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCT.......................................................2011.001100000
..............................................................................................................................................................................GATACACACGGTTCAGTTGTG................................................................................................2111.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG.....................................................2411.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA........................................................2111.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA......................................................2311.001100000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2211.001100000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCA.........................................................1911.001100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................2111.001100000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC......................................................2211.001100000
..............................................................................................................................................................................GATACACACGGTTCAGTTGTGT...............................................................................................2211.001100000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAAG.....................................................2311.001100000
.............................................................................................................................................................................GGATACACACGGTTCAGTTGT.................................................................................................2111.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT.....................................................2411.001100000
...................................................................................................................................................................................................TCACTTTT-GCGA---GCATCACTGGGCTTTG................................................................2811.001100000
.........................................................................................................................................................................TGTGGGATACACACGGTTCAGT....................................................................................................2211.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................2411.001100000
.............................................................................................................................................................................GGATACACACGGTTCAGTTGTGG...............................................................................................2311.001100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAG......................................................2111.001100000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCAT......................................................1911.001100000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTG........................................................1911.001100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG.........................................................2011.001100000
droBip1
TG------C--CCAGTG---------------TTGAAATCA----------TCCTGCCTCCCGCATC-GATCTTCCCCAGGGT-----------------------------------------------------------------------CCTCCGGTTTCAAATTATGGGATACACACAGTTCAGTTTTGTCACTTTT-GCGA---ACATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTT--------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
T----------CAAGTG--------------------TTAG----------TCCTAG-------AAG-GA--------CCCACCC-------------------------------------AG-------------------------TG---CCCCCGATTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTTTTCGATCCTCATCACTGGGCTTTGTTTATCTCATAAAAGCGAAAT-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGTGAATATC-TGTTTGA-------------TTTGAATTGA----------TCCTGC-------AGG-GAT-----G-AAGGA-----------------------------------------------------------------------TCCACGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTC--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGCGAATAGC-CGAGTGC-------------TTTAGAAGAA----------TCCTGC-------ACGGAA--------AAGGA-----------------------------------------------------------------------CTCTCGGTTTCAATTTATGGGATACACACAGTTCAGTCTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGA--GAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TA------TC-CGAGTGC-------------TTTGGATGAA----------TCCTGG-------AATTGA--------AGGGG-----------------------------------------------------------------------ACCCCGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TG------TCTTGAGTGC-------------CTTGAGTGAA----------TCCTGC-------AGG-AA--------GGGGT-----------------------------------------------------------------------CCCCCGGTTTCAGTTTATGGGATACACACAGTTCAGTCGTGTCGCATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGCGAGTATC-CGAGTGC-------------TTTTTG---G------TGAATCCTGA-------AGG-AA--------AAGGTCC-------------------------------------AGTTTAAGA-----------------------AAAAGGATTTCAGTTTATGGGATATACACAGTTCAGTCTTGTCGCCTTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TA------TT-TAAGTGC-------------CTTGAATGAA----------TTCTGT-------AAGGAA--------TACGA-----------------------------------------------------------------------CCCCTGGTTTCAGTTTATGGGATACACACAGCTCAGTCTTGTCACATGT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TA------TC-CGAGTGC-------------CTTGCGTGAA----------TCCTGG-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22118436845.00184368452805412364000000010000001558244380644187525935800036000468372354648042241074070445877848122848394417721294799595141192108406125194729231706972651300072472000000000000000001521811151375205014837211413023131908164101532410777979285231618346246092000509012155358413146073640336191675661541115371264142717012733118409362161124162327564379109349168599325004950461420192557321323861421083001357030911306422829616924221687511242811328764768376209467336920331623601211631922782361732791173205418297101851678351613376028129667397713625309612923156609667078107521685747428331350051482008503512223158210129753283172356441116466552134223889959510011984992049335097561242743230767911221802592469451224122117151113271019851187332560757645931377158424310930432123292183478383515576145117201186163914524193646248130654408451773724127105291702107132
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................2112351916.002351916000004800010000000000156346871492521890000000044032513628023983672449076144166421691039671392849667114426708108011603120010102000000000000000007999987500001041510331002387110002216232242974080023602160000010002022211741634303312031897664521955126022244281700686151320844277241397719543349151029202201316141539808010001120101142106638673462115766281301033912601082439455493274601580498821175134134621834157135964181613813352240828813116578010749754778236397115001613100000235224104313255913811943912860121636101121250462636713294585561173937334977837122026991731112421084640039619120795372693862073715164953592117553765723284844728215389919101132761136131417331861252206893722
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................201687247.0068724700001140001000000000030415878702515000000004125695318477998122630497631091932197174191225252958235719443490003900000000000000000043544537000000081021021531100007123640571160002110101000000002861912198157659142632473502246400740622799203835323683478660718250000047572292992400004000020500112923611071199995108613600211321675810312741012181651055250636022195310722522510876857859693277106841522210821136701300290000000543320010319100740750502210031401602148670983741328132987704311303241685838125154107419438001144378461280238673158687043216441413928248084242711191581230616176736232029139083764463637
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201266139.002661390000000000000000000027680213031200000000840431879321735241106134203528280334523932438153681435297050000000000000000000000034130000000000000007000000000000050010000100000000000010012251912460110214233573093960200656291245523344212148600000307104100200000000000150120057377143355702724026700000521280231000004974297472163448761634536812614122900000000000028200101000300000000000000000000105866334831772941489026099274044765882000000110016013131575101840697500000028316135719200100000000007030834147000300
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22187483.0087483000002000000000000006568403802000000007711410074122280625992622155111599820769551461790000000000000000000000010100000000000000001500000000010005000000010000000010010020354117762002225842944321491138269375990526000000000110200000000000000000002122430221070131010018670200010004732731421571527070348318000020000001110000000125000000100000000000000132110011298135627672083215821114910000000000020289665629655105330000169414219700000000000000922306001000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................23178291.00782910000010000000010000040162200050000000020872218118182418928328953634623362322141612148000000000000000000000000101000000000000010560000000112000100000000000000000000021020194113001055926272184031231237649388829800000100011010010000000000013003047220171402449349014050012246172326250303168201525219814962381011366512822651500000011660000010900000001160000001000001000100003074647411973147626711474398492811000000000000001155200397519520000015358651582000000100100008316213043020843
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................22154509.005450900000100000000000000135430020200000000179291287286111638266058425396708210114467150000000000000000000000001102100000120001000220000001000000300000001000000000000011834267032028108373268292160104224751026446000000000100001000000000040080031341265100302710001357201010020049211388916314357690331752610000030000002450100000124000000103000000000000156656864071326291212044138353873000000000005032746694719791000029011188500000000000000007373511000521
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................19143121.004312100000000000000000000136280500040000000099688153512142314981021011714815398842900000000000000000000000768700000000000000035000000000010070000000000000000000106755970605140232013812720121514929623419512526991623481160000020220000000000000000000031209217349120010067823118377040921002013242033579493734801711083804823550000095100000330000000250001000000010000100001677306560514472348414095218421211021020000114628047936565700001225058612131000000012010091233749712119111
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................21140415.0040415000000000000000000001166201020000000051204594117496301331212110912345198290001000000000000000000001010000000000000003210000010000001000000000000000000001000445142126110100122259771813782332434631260000000000000020000000000000100325002240002028000011822001200100773210117460242909891501034543000000000005900000000500000000000000000000012336532326134715821029113316691100000000000100329921212622000000367322549000000101000001633237000005
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19134420.00344200000000000000000000036801000400000000985114936761129151620241301632281346523345000000000000000000000000111000000000000000100000000000000000000000000000000000013102100203558322126206781333424942619200000000040000000000000000000101040230110010034000007140001000001665610596116176284643486232860000000000012000000012000000000000000000000126873583001484129186445963734000000000000101974432568160010003023165510000001000000141098416000100
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................18110293.0010293000000000000000000005321000100000000132141614138630455440602918379000000000000000000000000401000000000000000000000000000000000000000000000000000120000000201024836642351533395110000020010000000000000000000010001609100000900000040000000001312510564397921721011020000000000030000000000000001000000000000004532263121512465324610775800000011000000019905419300000075224000000000000000219147000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19110063.00100630000000000000000000020127000000000000083815024222043358433996970000000000000000000000001000000000000000003000000000000010000000000000000000000030002001000222416812042756659636000000000000000000000000000000001571120000104700013962000000003224637293371261800000000000200000000100000000000000000000059931807434827317892151448000000000000200511553476000001468398000000000000000340000009
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................2319837.00983700000100000000000000844000010000000016810818040816249442456441511300024100000000000000000000132000000000000000200000000000000700000000000000000000000330270000021812043742804170162590000000000000010000000000000000113636200130152010025240001000004970010571791517753431011581059000136100000140000000010000000010000000000001714405516828867536280421001000000000012220610821000000028891330000000000000041474000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................2228879.001775800000500000000000000133100000000000001115162390237321411668110421879108000000000000000000000000001000000000000000320000000000000900000000000000000100021181418340000010973364381778425459000000100000000000000000001000013661112000201700000394200001000079442212391410134251482080000000000063000000001000000000000000000000086716453014981771329413262465201000000000101348523402631000000179348529000000100000002147564000500
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................2015523.00552300000000000000000000280000000000000743130615020261411812300000000000000000000000011000000000000000050000000000000100000000000000000000012001351000005245197130193311000000000000000000000000000000000202100000400000130000000001101285294112874997530000000000010000000020000000000000000000003331388692622321512805150000000000000001855267900000029556500000000000000013143000100
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................1815045.005045000000000000000000002710800100000000005440403090271242330511000000000000000000000000000000000000000000010000000000000100000000000000000000000100014000000101183345122149278000000000000000000000000000000000272110000001811034090000000001732280305051000000000002000000000000000000000000000000231178428158117825107862000000000000000305414230000002129260000000000000001200000010
.............................................................................................................................................................................GGATACACACAGTTCAGTTTTG................................................................................................2214844.004844000004000000000000001110000000000040458480284231142117312132110004327400000000000000000000000000000100000011410000005240002400000000000000000000000000000000001392446241043471938000002030000000000000001000000000402243000002000006700000000011461281343157324728000000000009800000000100000000000000000000022115181333420841211000000000000303207103667303000000227305243100000000000003271000705
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................1814190.004190000000000000000000001857000000000000019252111102104951711823117197000000000000000000000002425000000100000000130000000000001300000000000000001102584577641000012880020035514230333517261400000000100000000000000000001030102402230000023100106500100010252911522191492141612000100000006000000001000000000000020000000841742863961691062273000020100001029375132420000003710024100100000000000554200010113
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2114119.004119000001000000000000000710000000000003053130105321028494539420000000000000000000000000000000000000000004000000000000000000000000000000000006801101000000636102330152429900000000000000000000000000000100016111100000400000240000000003011274292321513042000000000000000000000000000000000000000000770446166102726486236961010000000000025714852100000010204000000000000000134972000100
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................2313996.003996000000000000000000001140000000000000135741202032133005737281740800000000000000000000000000000000000000000011000000000000010100100000000000000002003028000000855121920222558250000000002000000000000000000000001007300030000001360000000002130021026301110766183139000024100000110000000000000000000000000000005443329871327331465030000000000001005784811030000001629500000000000000001141000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC.....................................................2412658.0026580000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000422221230000259635000000000000000000000000000000000000000001000000000000000001001000000000000000000000000200000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................2112332.002332000002000000000000002500002000000001124100151618111813239810000000000000000000000000010000000000010001000000000000000000000000000000000002410120000100813181680412112000000000000100000000000000000000101100000400000780001000007020625713655896171000010000001500000001000000000000000000000018522748642613468411300000000000000114194623000001112743000000000000001752000100
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA.....................................................2412058.0020580000000000000000000013000000000000085335020001211289013800000000000000000000000000000000000000000000000000000000000000000000000000000000030030000000436126111350000000000000000000000000000000004000000200000013100000000070105687584749363520000000000010000000000000000000000000000005712220901502923612100000000000000018281641000000111545000100100000006430000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................2311905.001905000003000000000000002000000000000001141201030917350222000000000000000000000000000000000000000000190000000000000400000000000000000000000002200010011261821305200000000000000000000000000000000000200000020000003000000100000060713959135135000000000000000000000000000000000000000000362481467654693123500000000000000022491130000001624641000000000000001500000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................1911686.0016860000000000000000000002000020000000003310011000033513200000000000000000000000000100000000000000000000000000000000000000000000000000123000000000101105930242400000000000000000000000000000000010000000000000000000000000200016892102199000000000000000000000000000000000000000000101462168090572138400000000000000131481600000031730000000000000001332000002
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................2111274.001274000000000000000000000000000000000000000100012010015520000000000000000000000000000000000000000000000000000000000100000000000000000000011000110000001012101542000000000000000000000000000000000001000000000000000000000000011210113030000000000010000000010000000000000000000002561525330243157125811000000000000043173035000000055000000000000000120000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................2111170.001170000000000000000000001400000000000004134402040201861014400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000626401312176000000000000000000000000000000000301000000000000020000000000000125111033221100000000000000000000000000000000000000000037167174837305271900000000000000007289220000002319000000000000000120000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCC.......................................................2011117.001117000000000000000000000000000000000004261706115020227901433220000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001061424020141915000000000000000000000000000000000101000000100000000000000000000600020540000000000010000000000000000000000000000001414823124129317910000000000000013812125140000000215000000000000000030000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................201986.00986000000000000000000000000000000000001221101030104001220000000000000000000000000000000000000000000000000000000000000000000000000000001012000000010001505101220000000010000000000000000000000000302000000200000110000000003000523167116000000000001000000002000000000000000000000114197245797160274300000000000000213111923000000414410000000000000041042000200
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................201830.008300000010000000000000001000010000000020012022003011024000000000000000000000000000000000000000000000000000000000000000000000000000000066200000000003924512231000000000000000000000000000051000001000000100000010000000000000201077151922190000000000000000000000000000001000000000005299124511320672600000000000000045940000002832000000000000002302000100
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTAC.......................................................221823.0082300000000000000000000430000000000000001200800020038282700000000000000000000000000000000000000000000000000000000000000000000000000000000012021000000011246103101130000000000000000000000000000100002010000101000000100000000010000000110100001000000100000000000000000000000000000072671318435351820000000000000009271337000000101000000000000000000000000
droSim2
TGCGACTATC-CGAGTGC-------------CTTGCGTGAA----------TCCTGT-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--TAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................2213942541.00394254112933879676171220272141824486803814447127461250000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................211491858.00491858145433022761225110422771746585978912000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................201173103.0017310314241252209027677817962535501640000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................23118327.00183270026000887889076715396020000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................19110629.0010629530445138133209513539040000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................2013716.003716000550011951126611333000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................1912648.002648000700145389002107000000
.............................................................................................................................................................................................................................GCTTTGTTTATCTCA.......................................................1512131.002131000000108876370273000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2111992.001992000862005304975197000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................2211814.00181400038009127802080110000
...........................................................................................................................................................................................................................GGGCTTTGTTTATCTCA.......................................................1711757.00175700000022001753000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................1811718.001718000132175960230338000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................1811285.0012850004008282101116000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................231800.008000002003953652035010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTA............................................................171708.0070800000012210710478000000
............................................................................................................................................................................................................................GGCTTTGTTTATCTCA.......................................................161682.00682000000825910540000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................191541.00541000120021515200161010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................221468.004680003002281982235000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................211393.003930001600188186003000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTT.............................................................162376.50753000000716000622000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA.....................................................241372.003720000001881654015000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................201362.003621001950065810019010000
.............................................................................................................................................................................GGATACACACAGTTCAGTTTTG................................................................................................221340.0034000015001481030070040000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................222309.0061860210026619001152000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231301.0030100010001351092045000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................211282.002820003001511120016000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................211276.0027600010001141420010000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTC........................................................171263.00263000000403801183010000
...........................................................................................................................................................................................................................GGGCTTTGTTTATCTC........................................................161250.002500000000000250000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTT..............................................................153216.33649000000674900533000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................181210.0021000020090510067000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................181188.00188000100194700121000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................231156.0015600030070601022000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191150.0015000080002741002000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCT.........................................................16193.009300000022190052000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................20191.00910004003945003000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATC..........................................................17163.0063000000120060000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCT.........................................................17158.00580000001110046000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................20151.005100000017161017000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................22146.004600020018140012000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATC..........................................................16142.0042000000940029000000
...........................................................................................................................................................................................................................GGGCTTTGTTTATCT.........................................................15332.6798000000100097000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA........................................................21227.00540001002622005000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATC..........................................................15126.0026000000760013000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................24126.0026000000188000000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT.........................................................21119.0019000100107001000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATA.....................................................21118.001800000098001000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23117.001700020027006000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA.....................................................24116.001600000087001000000
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA.......................................................24115.001500000094002000000
.................................................................................................................................................................................ACACACAGTTCAGTTTTG................................................................................................18115.0015000000000015000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22115.001500040083000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................21115.001500010057002000000
............................................................................................................................................................................................................................GGCTTTGTTTATCTC........................................................15213.5027000000210024000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAA......................................................20112.001200010016004000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCAA......................................................19112.0012000000010011000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................18111.001100040011005000000
.............................................................................................................................................................................GGATACACACAGTTCAGTTTT.................................................................................................21111.001100000023006000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA.....................................................22110.001000000045001000000
...........................................................................................................................................................................TGGGATACACACAGTTCAGTT...................................................................................................21110.001000000003007000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTAT...........................................................16110.001000000011008000000
...........................................................................................................................................................................TGGGATACACACAGTTCAGTTT..................................................................................................22110.001000000040005010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATA..........................................................19110.001000000013006000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATC.....................................................2219.00900000000009000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG.........................................................2019.00900010022004000000
droSec2
TGCGACTATC-CGAGTGC-------------CTTGCGTGAA----------TCCTGT-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC----------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................221292381.00292381286636108474654
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................21129473.0029473288141510508
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................21123562.002356223554206
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2014362.0043624201380123
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................2012430.0024302430000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201987.009879554028
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................231761.007617385018
.............................................................................................................................................................................GGATACACACAGTTCAGTTTTG................................................................................................221418.00418417001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231321.00321320001
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191304.00304303001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................191216.00216214101
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................231168.00168167001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................222135.50271267004
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................231127.00127127000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................211111.00111111000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG.......................................................211106.00106106000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................231102.00102102000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................191102.00102102000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22199.009996003
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19199.009996102
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22168.006867001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22164.006461102
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18157.005757000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................21139.003939000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................22130.003030000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................18125.002524001
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................18119.001919000
..............................................................................................................................................................................GATACACACAGTTCAGTTTTG................................................................................................21116.001616000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA.....................................................24115.001514001
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................18113.001313000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................18111.001111000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC......................................................22110.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA........................................................21110.001010000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG.........................................................2019.0099000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2019.0099000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2219.0099000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2218.0088000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC.......................................................2118.0088000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................2127.001414000
.............................................................................................................................................................................GGATACACACAGTTCAGTTTT.................................................................................................2116.0066000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2115.0055000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................2415.0055000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGA.....................................................2414.0044000
...........................................................................................................................................................................TGGGATACACACAGTTCAGTTT..................................................................................................2214.0043001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................2014.0044000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTA........................................................2013.0033000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATT..........................................................1923.0066000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................2113.0033000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTG........................................................2013.0033000
droYak3
TA------TC-CGAGTGC-------------CTAGCGTGTA----------TCCTGG-------ATG-AA--------AAGGT-----------------------------------------------------------------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCACTA--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22188093.00880931704854662120829732800087
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................2119211.00921191081231021363700083
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2117718.00771807717001000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2011577.001577271528008470003
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................201661.006610661000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201384.003842374003320000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................231318.003180315000210000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................221196.001960192000400000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231156.001564152000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................222124.0024824224000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191103.001030103000000000
.............................................................................................................................................................................GGATACACACAGTTCAGTTTTG................................................................................................22197.0097096000010000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................23191.0091091000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................19167.00671156000000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19152.0052052000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22150.0050041002700000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22137.0037037000000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18128.0028026000010001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................23127.0027027000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19127.0027027000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23125.0025025000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21115.0015015000000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2219.00909000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................1819.00909000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................2118.00817000000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTC........................................................1818.00808000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................2218.00808000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC.........................................................2017.00761000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2116.00623000000001
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA.....................................................2416.00606000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTA............................................................1714.00400000000004
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................1814.00404000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT.....................................................2313.00303000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................1813.00303000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2213.00303000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC......................................................2213.00303000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................2412.00202000000000
............................................................................................................................................................................GGGATACACACAGTTCAGTTTTG................................................................................................2312.00202000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC.......................................................2112.00202000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACTT....................................................2512.00202000000000
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA.......................................................2412.00202000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCT.......................................................2011.00101000000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAAA.....................................................2311.00101000000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT.........................................................2111.00101000000000
....................................................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTC........................................................2311.00101000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................2011.00101000000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA......................................................2111.00101000000000
..............................................................................................................................................................................GATACACACAGTTCAGTTTTG................................................................................................2111.00101000000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2221.00201000100000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGC.....................................................2411.00101000000000
droEre2
TA------TC-CGAGTGC-------------TAGGCGTGTA----------TCCTGG-------CTG-AA--------GAGGT-----------------------------------------------------------------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC----------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA.......................................................22193046.00930469264102223819144
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC........................................................21111122.00111221103100018172
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA.......................................................2117522.0075227522000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT.........................................................2013717.00371736800203329
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC........................................................201879.00879879000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA.......................................................201335.00335335000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA......................................................231304.00304302000110
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCT.........................................................191273.00273273000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT.......................................................221265.00265264000010
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT......................................................231165.001651220000043
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATC..........................................................191138.001381280000010
.............................................................................................................................................................................GGATACACACAGTTCAGTTTTG................................................................................................22198.009898000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT........................................................21160.006060000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG........................................................21149.004949000000
.........................................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA.......................................................19146.004646000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA.......................................................23145.004545000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG......................................................23140.004040000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC........................................................19136.003636000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA......................................................22134.003434000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC......................................................23124.002424000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTAT...........................................................18123.002323000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC.......................................................22120.002020000000
..........................................................................................................................................................................................................................TGGGCTTTGTTTATCTCA.......................................................18119.001919000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG.......................................................22217.503535000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT.......................................................21116.001616000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG.......................................................21212.502525000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA.........................................................20111.001111000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT......................................................22111.001111000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT.....................................................24110.00104000006
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATC..........................................................1818.0088000000
.....................................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC........................................................2216.0066000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCT.........................................................1815.0055000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA........................................................2115.0055000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG......................................................2215.0055000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA........................................................2115.0055000000
..............................................................................................................................................................................GATACACACAGTTCAGTTTTG................................................................................................2114.0044000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATA..........................................................1923.0066000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCA.........................................................1913.0033000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT.......................................................2212.0022000000
............................................................................................................................................................................GGGATACACACAGTTCAGTTTTG................................................................................................2312.0022000000
.......................................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT........................................................2012.0022000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG.........................................................2012.0022000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACC.....................................................2412.0022000000
........................................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT......................................................2112.0022000000
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTA............................................................1712.0020000002
......................................................................................................................................................................................................................TCACTGGGCTTTGTTTATT..........................................................1921.5033000000

Generated: 10/20/2015 at 07:02 PM