ID:

dwi-mir-3

 Coordinate:

scf2_1100000004514:1651934-1652011 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.8 -33.4 -33.3

Flybase annnotation

pre_miRNA [Dwil\mir-3-RM]; utr3 [utr3_minus_3619]; miRNA [Dwil\miR-3-RA]

No Repeatable elements found

Sense Strand Reads

AAATACAATTGGAGTGTTAAAAAAAAAGGAGAGTAATCGAATTTAGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCTCTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACCCAAAAAGTTAGCCAACCAAACTTAGTGAGTG

*******************************************...((((.((((.(((((((((((((((.((((.(((.....((......)).....))).)))).))))))))))))))).)))).)))).....*************************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 V119

head

 M045

female body

 V117

male body		 M020

head
......................................................................................................TCACTGGGCAAAGTGTGTCTCA...................................................... 22 0 1 42754.00 42754 42474 182 92 6 0
......................................................................................................TCACTGGGCAAAGTGTGTCTC....................................................... 21 0 1 559.00 559 544 1 11 1 2
........................................................................................................ACTGGGCAAAGTGTGTCTCA...................................................... 20 0 1 368.00 368 365 1 2 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCT........................................................ 20 0 1 286.00 286 277 1 6 2 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAA..................................................... 23 1 1 278.00 278 274 1 3 0 0
......................................................................................................TCACTGGGCAAAGCGTGTCTCA...................................................... 22 1 1 164.00 164 164 0 0 0 0
......................................................................................................TCACTTGGCAAAGTGTGTCTCA...................................................... 22 1 1 113.00 113 113 0 0 0 0
......................................................................................................TAACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 104.00 104 104 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGCGTCTCA...................................................... 22 1 1 77.00 77 76 0 1 0 0
......................................................................................................TCACTGTGCAAAGTGTGTCTCA...................................................... 22 1 1 72.00 72 72 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTAA...................................................... 22 1 1 69.00 69 68 1 0 0 0
......................................................................................................TCACTGGTCAAAGTGTGTCTCA...................................................... 22 1 1 67.00 67 67 0 0 0 0
......................................................................................................TCACTGGGAAAAGTGTGTCTCA...................................................... 22 1 1 63.00 63 63 0 0 0 0
......................................................................................................TCACTGGGCAAAGGGTGTCTCA...................................................... 22 1 1 58.00 58 57 1 0 0 0
.......................................................................................................CACTGGGCAAAGTGTGTCTCA...................................................... 21 0 1 51.00 51 40 0 11 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCCCA...................................................... 22 1 1 51.00 51 51 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGCCTCA...................................................... 22 1 1 48.00 48 48 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTTTCTCA...................................................... 22 1 1 48.00 48 46 2 0 0 0
......................................................................................................TCACTGGGCGAAGTGTGTCTCA...................................................... 22 1 1 46.00 46 46 0 0 0 0
......................................................................................................CCACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 44.00 44 44 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAT..................................................... 23 0 1 43.00 43 42 0 1 0 0
......................................................................................................TCACTGGGCAAAGAGTGTCTCA...................................................... 22 1 1 42.00 42 42 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTATCA...................................................... 22 1 1 42.00 42 40 2 0 0 0
......................................................................................................TCACTGGGCAAGGTGTGTCTCA...................................................... 22 1 1 41.00 41 41 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTCATA.................................................... 22 0 1 40.00 40 40 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCT...................................................... 22 1 1 39.00 39 39 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCTCA...................................................... 22 1 1 38.00 38 36 2 0 0 0
......................................................................................................TCAATGGGCAAAGTGTGTCTCA...................................................... 22 1 1 36.00 36 36 0 0 0 0
..........................................................GGATGCATTTTGTGCAGTTATG.................................................................................................. 22 0 1 36.00 36 36 0 0 0 0
......................................................................................................TCGCTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 34.00 34 34 0 0 0 0
......................................................................................................TCACTGGCCAAAGTGTGTCTCA...................................................... 22 1 1 33.00 33 33 0 0 0 0
......................................................................................................TCACTGAGCAAAGTGTGTCTCA...................................................... 22 1 1 32.00 32 32 0 0 0 0
......................................................................................................TCCCTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 31.00 31 31 0 0 0 0
......................................................................................................TCACCGGGCAAAGTGTGTCTCA...................................................... 22 1 1 31.00 31 29 2 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCG...................................................... 22 1 1 29.00 29 28 0 1 0 0
......................................................................................................TTACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 29.00 29 27 2 0 0 0
......................................................................................................TCACTGGGCAAAGTGTATCTCA...................................................... 22 1 1 29.00 29 28 1 0 0 0
......................................................................................................TCACTAGGCAAAGTGTGTCTCA...................................................... 22 1 1 29.00 29 28 1 0 0 0
......................................................................................................TCACTGGGCAGAGTGTGTCTCA...................................................... 22 1 1 28.00 28 28 0 0 0 0
.....................................................................................................CTCACTGGGCAAAGTGTGTCTCA...................................................... 23 1 1 28.00 28 28 0 0 0 0
......................................................................................................TCACTGGACAAAGTGTGTCTCA...................................................... 22 1 1 28.00 28 28 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.................................................... 24 1 1 27.00 27 27 0 0 0 0
......................................................................................................TCACTGGGTAAAGTGTGTCTCA...................................................... 22 1 1 27.00 27 27 0 0 0 0
......................................................................................................TCACTGCGCAAAGTGTGTCTCA...................................................... 22 1 1 25.00 25 25 0 0 0 0
......................................................................................................TCACTGGGCAAATTGTGTCTCA...................................................... 22 1 1 25.00 25 25 0 0 0 0
......................................................................................................TCACTGGGCAAAGTTTGTCTCA...................................................... 22 1 1 24.00 24 24 0 0 0 0
......................................................................................................TCACTGGGCAAAGTCTGTCTCA...................................................... 22 1 1 24.00 24 23 0 1 0 0
......................................................................................................TCACTGGGCACAGTGTGTCTCA...................................................... 22 1 1 23.00 23 23 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTTA...................................................... 22 1 1 23.00 23 23 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGAGTCTCA...................................................... 22 1 1 23.00 23 23 0 0 0 0
......................................................................................................TCACTCGGCAAAGTGTGTCTCA...................................................... 22 1 1 20.00 20 20 0 0 0 0
.......................................AATTTAGACCATGATTTTG........................................................................................................................ 19 0 1 19.00 19 18 0 1 0 0
......................................................................................................TCATTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 19.00 19 17 2 0 0 0
......................................................................................................TCACTGGGCAAAGTATGTCTCA...................................................... 22 1 1 19.00 19 19 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCC...................................................... 22 1 1 18.00 18 18 0 0 0 0
......................................................................................................TCACTGGGCAAAATGTGTCTCA...................................................... 22 1 1 18.00 18 18 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCA........................................................ 20 2 2 18.00 36 33 3 0 0 0
......................................................................................................TCACTGGGCAAAGTGGGTCTCA...................................................... 22 1 1 17.00 17 17 0 0 0 0
......................................................................................................TCACTGGGCAAACTGTGTCTCA...................................................... 22 1 1 16.00 16 14 0 2 0 0
......................................................................................................TCACTGGGCAAAGTGTGTTTCA...................................................... 22 1 1 14.00 14 14 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAC..................................................... 23 1 1 13.00 13 13 0 0 0 0
......................................................................................................TCACTGGGCAACGTGTGTCTCA...................................................... 22 1 1 12.00 12 11 1 0 0 0
........................................................TGGGATGCATTTTGTGCAGTTA.................................................................................................... 22 0 1 11.00 11 11 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTGTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0
......................................................................................................TCACTGGGCCAAGTGTGTCTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0
........................................ATTTAGACCATGATTTTG........................................................................................................................ 18 0 1 10.00 10 10 0 0 0 0
......................................................................................................TCACGGGGCAAAGTGTGTCTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCATT.................................................... 24 1 1 9.00 9 8 0 1 0 0
......................................................................................................TGACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0
......................................................................................................TCACAGGGCAAAGTGTGTCTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0
......................................................................................................TCACTGGGCAATGTGTGTCTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGACTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0
........................................................TGGGATGCATTTTGTGCAGTT..................................................................................................... 21 0 1 8.00 8 8 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTC....................................................... 19 0 1 7.00 7 7 0 0 0 0
......................................................................................................ACACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 6.00 6 5 1 0 0 0
...................................................................................................TCATCACTGGGCAAAGTGTGTC......................................................... 22 0 1 6.00 6 6 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCATA.................................................... 24 0 1 6.00 6 6 0 0 0 0
................................................................................TCTTCATGTGATAATTCTCTCA............................................................................ 22 0 1 6.00 6 6 0 0 0 0
......................................................................................................TCACTGGGCATAGTGTGTCTCA...................................................... 22 1 1 6.00 6 6 0 0 0 0
..........................................................................................................TGGGCAAAGTGTGTCTCA...................................................... 18 0 1 5.00 5 4 0 1 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTGA...................................................... 22 1 1 5.00 5 5 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTC......................................................... 19 0 1 5.00 5 5 0 0 0 0
......................................................................................................TCAGTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 5.00 5 5 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGGCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0
......................................................................................................GCACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0
......................................................................................................TCTCTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0
.........................................................................................................CTGGGCAAAGTGTGTCTCA...................................................... 19 0 1 4.00 4 4 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCGCA...................................................... 22 1 1 4.00 4 4 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAAAA................................................... 25 1 1 4.00 4 4 0 0 0 0
......................................................................................................TCACTGGGCTAAGTGTGTCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTCAT..................................................... 21 0 1 4.00 4 4 0 0 0 0
.......................................................................................................CACTGGGCAAAGTGTGTCTC....................................................... 20 0 1 4.00 4 0 0 4 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTCAA..................................................... 21 1 1 4.00 4 4 0 0 0 0
......................................................................................................TCACTGGGCGAAGTGTGTCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCACA...................................................... 22 1 1 3.00 3 3 0 0 0 0
........................................................TGGGATACATTTTGTGCAGTTA.................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTTGGCAAAGTGTGTCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAG..................................................... 23 1 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGT.......................................................... 18 0 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTGGGGAAAGTGTGTCTCA...................................................... 22 1 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTGTCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTTGGCAAAGTGTGTCTCAA..................................................... 23 2 1 3.00 3 3 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCTT..................................................... 23 1 1 2.00 2 2 0 0 0 0
.......................................................................................................CACTGGGCAAAGTGTGTCT........................................................ 19 0 1 2.00 2 0 0 2 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTA....................................................... 21 1 1 2.00 2 2 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTCAAA.................................................... 22 1 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCCT..................................................... 23 1 1 2.00 2 2 0 0 0 0
........................................................................................................ACTGGGCACAGTGTGTCTCA...................................................... 20 1 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTTTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGCGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0
....................................................................................................CATCACTGGGCAAAGTGTGTCT........................................................ 22 0 1 2.00 2 2 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTCATT.................................................... 22 1 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTGTCT........................................................ 20 1 1 2.00 2 2 0 0 0 0
............................................................................................................................TAATTTTGGTAACCATATC................................... 19 0 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTTCCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTGTCTCAA..................................................... 23 2 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTTGGCAAAGTGTGTCT........................................................ 20 1 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCCA....................................................... 21 2 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTTGGCAAAGTGTGTCTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTGGGCAAACTGTGTCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0
......................................................................................................TCACTTGTCAAAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0
......................................................................................................TAATTGGGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCATTGGGCAAAGTGTGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................................ACTAGGCAAAGTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
.....................................................................................................CTCACTGCGCAAAGTGTGTCTCA...................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACCGTGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
....................................................................................................CATCACTGGACAAAGTGTGTCT........................................................ 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................................CTGGGTAAAGTGTGTCTCA...................................................... 19 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGCCAAAGTGTGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGTGCAAAGCGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTTGGCACAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCAAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTAGGCAAAGTGAGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................................TCCTGGGCAAAGTGTGTCTCA...................................................... 21 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAAT................................................. 27 2 1 1.00 1 1 0 0 0 0
.....................................................................................................CTAACTGGGCAAAGTGTGTCTCA...................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TAACTGGGCAAAGTGTGTCTCAAA.................................................... 24 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGTCAAAGTGTGTCTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTAG...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGAAAAGTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTGTCCCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TTACTGGGCAAAGTGTGTCTCG...................................................... 22 2 1 1.00 1 1 0 0 0 0
.....................................................................................................CTCACTGGGCAAAGTGGGTCTCA...................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTTTGTCT........................................................ 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCT........................................................ 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGGGGGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGACAAAGTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGGGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAGTGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTGTCTCC...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TAACTGGGCAAAGTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGTGCAAAGTGTGTCTCAAA.................................................... 24 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTGAAAAT.................................................. 26 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCACAGTGTGTATCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.....................................................................................................ATCACTGGGCAAAGTGTGTCTCA...................................................... 23 0 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCACAGTGTGTCT........................................................ 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................................CACTGGGCAAAGGGTGTCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAACA................................................... 25 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGCGTGTCTCAT..................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTGTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
........................................................................................................TCTGGGCAAAGTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAGGTGTGTCTC....................................................... 21 1 1 1.00 1 0 0 1 0 0
......................................................................................................TCACTGAGCAAAGTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAATTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................CCACTGGGCAAACTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAACGTGTGCCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCTCT...................................................... 22 2 1 1.00 1 0 0 1 0 0
......................................................................................................TCACTGCGCAAAGTGTTTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................................TACTGGGCAAAGTGTGTCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................................................................TCATCACTGGGCAAAGTGTGT.......................................................... 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAAAG................................................... 25 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGTGCAAAGTGTGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.................................................... 24 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTATGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCCCTGGTCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAACC................................................... 25 3 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTTTCAA..................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGCGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................CCACTGGGCAAAGTGAGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGCCAAAGTGTGTATCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
..........................................................GGATGCATTTTGTGCAGTTAT................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................CAACTGGGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................................CACTGTGCAAAGTGTGTCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGAGTGTCTCAA..................................................... 23 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGCCTCATA.................................................... 22 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGTCACAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGAAAAGGGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................CCACTGGGCAAAGTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTA......................................................... 19 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGTCAAAGTGTGTTTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACCGGGCAAAGTGTTTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGAGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACCGGGCAAAGTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTTTCCCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
..........................................TTAGACCATGATTTTGGGA..................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAGGTGTGTATCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCACTGT.................................................. 26 3 1 1.00 1 1 0 0 0 0
.......................................................................................................TCCTGGGCGAAGTGTGTCTCA...................................................... 21 3 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGCGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCTCAA..................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGAGTCTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAATGTGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCACA.................................................... 24 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGAGGGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTAAA..................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGCGTCTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGTAAAGCGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................CCACTGTGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTTTCT........................................................ 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCCCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCAATGGGCAAAGTGTGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCGCTGGGAAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................CCACTGGGCAAAGCGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGCCTCCA..................................................... 23 3 1 1.00 1 1 0 0 0 0
......................................................................................................TCACCGGGCAAAGTGTGTCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGCGGCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTCTC......................................................... 19 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGCATCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................TCGGGGCAAAGTGTGTCTCA...................................................... 20 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAATTGAGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGTGTCTCAAAA................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAA.................................................. 26 2 1 1.00 1 1 0 0 0 0
............................................................ATGCATTTTGTGCAGTTATGT................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................TCACCGGGCAAAGTGTGCCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGAGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.......ATTGGAGTGATAGAAAAAAAG...................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0
......................................................................................................CCACTGGGCAAAGTGTGTCTCAAA.................................................... 24 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGGGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGAGCAAAGGGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTCTCATATA.................................................. 26 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGAGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAGGTGTGCCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTTGGCAAAGTGTGCCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................................CACTGGGCAAAGTGGGTCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................TGGGATGCATTTTGTGCAGTTT.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCATTGGGCAAAGTGTGTCTCG...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAGAGTTTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAGGTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCCAAGCGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
.....................................................................................................CTCACTGGGCAAAGTGTGTCT........................................................ 21 1 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAACTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGCAAAGTGCGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCACAGTGCGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTGCCA...................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................TCTTGGCAAAGTGTGTCTCA...................................................... 20 2 1 1.00 1 1 0 0 0 0
........................................................................................................TCAGGGCAAAGTGTGTCTCA...................................................... 20 2 1 1.00 1 1 0 0 0 0
........................................................................................................ACTGGGAACAGTGTGTCTCA...................................................... 20 2 2 0.50 1 1 0 0 0 0
......................................................................................................TCACTGGGTGAAGTGTGTCTCA...................................................... 22 2 2 0.50 1 1 0 0 0 0
......................................................................................................TCACTGGGAAGTGTGTGTCTCA...................................................... 22 3 2 0.50 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTTTGTCTTA...................................................... 22 2 2 0.50 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTATCA........................................................ 20 2 2 0.50 1 1 0 0 0 0
.....................................................................................................CTCACTGGGCAAAGTGTCTCA........................................................ 21 3 3 0.33 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGCGTCCA....................................................... 21 3 4 0.25 1 1 0 0 0 0
......................................................................................................TCACTGGGCAAAGTGTGTTCA....................................................... 21 3 4 0.25 1 1 0 0 0 0
........................................................................................................ACTGTGCAAAGTGTGTTTCA...................................................... 20 2 7 0.14 1 1 0 0 0 0
......................................................................................................TCCCTGGGCAAAGTGTCTCA........................................................ 20 3 8 0.13 1 1 0 0 0 0
......................................................................................................TCACTGGGCAATGTGTCTCA........................................................ 20 3 14 0.07 1 1 0 0 0 0

Anti-sense strand reads

TTTATGTTAACCTCACAATTTTTTTTTCCTCTCATTAGCTTAAATCTGGTACTAAAACCCTACGTAAAACACGTCAATACAGAAGTACACTATTAAGAGAGTAGTGACCCGTTTCACACAGAGTATTAAAACCATTGGTATAGTTGGGTTTTTCAATCGGTTGGTTTGAATCACTCAC

***************************************...((((.((((.(((((((((((((((.((((.(((.....((......)).....))).)))).))))))))))))))).)))).)))).....******************************************* 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V117

male body		 M020

head
........................................................................................................................................................TCAATGGGTTGGTTTGGA........ 18 2 7 2.14 15 13 1 1
.......................................................................................................................................................GTCAATGGGTTGGTTTGGATC...... 21 3 2 0.50 1 0 1 0
.......................................................................................................................................................GTCAATGGGTTGGTTTGA......... 18 2 11 0.18 2 0 2 0
.......................................................................................................................................................ATCAATGGGTTGGTTTGGAT....... 20 3 12 0.08 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004514:1651884-1652061 - dwi-mir-3 Known_mirbase AAATACAATTGGAGTGTTAAAAAAA-----------AAGGAGAGTA-----ATCGAATT-T-AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTT-CATGTGATAATTCTCTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACCCAAA----------------------------------A--------AG----------TTAGCCA------ACCAA--A--------------------CTTAGTGAGT--G
droVir3 scaffold_12875:4111910-4112080 + dvi-mir-3 Known_mirbase AAATAAAACAATATTATTAAATAAA-----------AATA----CC-----AGAATCTC-A-TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTG-CCTC---CAAA--ACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAACG--CAG------CTCAGATATTCCAGTGT---TT------------------------------C-------------------------------------AGTGT--G
droMoj3 scaffold_6496:20936946-20937116 - dmo-mir-3 Known_mirbase AAACGAAACAGC------AAGGAAAAAGT-------CCAGTCAATTCAACGGAACTCTC-G-CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAAC-GATT---GGAA--ACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACA------AAGGAGGAGTGTTTCAG---TTCC----------------------------------------------------------------------------AGTGTTT--C
droGri2 scaffold_5621:2617-2796 + dgr-mir-3-2 Known_mirbase AAAGTT---------------------GTACATAAAAATGCTTGCC-----AAATTTTC-A-TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACTCTT---GTAA--AACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAT----------------------------------------------------AATATAAAATGGCAA--TTT------TTGCAGTGTTTTGCAGTGTTTTG----TGTGT--G
dp5 3:12677706-12677878 - dps-mir-3 Known_mirbase GCGATCAGCGAGCGTCTCAGCGCAC-----------ATTGTGAACG-----ACGATACC-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA-CGTG--ATCAT--CCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTGTAC----------------------------------A--------AG----------AATGGCG------AT-AA--A--------------------GTGTGTGTGT--C
droPer2 scaffold_2:8905788-8905960 + dpe-mir-3 Known_mirbase GCGATCAGCGAGCGTCTCAGCGCAC-----------ATTGTGAACG-----ACGATACC-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA-CGTG--ATCAT--CCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTGTAC----------------------------------A--------AG----------AATGGCG------AT-AA--A--------------------GTGTGTGTGT--C
droAna3 scaffold_13266:9731188-9731340 + dan-mir-3 Known_mirbase AAAGCC---------------------GTCCAGACATCTGTGAGCC-----C----CCAAC-TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACC-AAAA---ATAT--ATCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACG----------------------------------AAGAATCAATTCAT-C----------------------------AAATT--------------------G----TAAGT--G
droBip1 scf7180000396427:874171-874321 + ACGTCCA-------------------------GAAATCTGTGAATC-----CTCCGCTC-C-GGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATC-AAAA---TCAT--AACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACA----------------------------------AAGAATCCAGTC-----------------------------AT-CAAAT--------------------G----TAAGT--G
droKik1 scf7180000302679:89496-89659 - GCAAT-------------------------------CCAGTGAACC-----A----GCA-A-AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAA-CGTG--AT--A--CTCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACG---------GAG----ACTCCAA---CAGCAG--C-------ACCAAGAAAGTAAAGTT---------C-CAAAAGT-GA----------------------------AAAGA--A
droFic1 scf7180000454039:848161-848301 - GTA--------------------------------AAGTGTTAACT-----A----CCAAA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTA---TC---------TCTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCG----------------------------------AATCTTCAAACAAACCAAT--AATC-----------C-----------A--------------------A----CAAGT--G
droEle1 scf7180000491201:2014116-2014260 - TCTC----------------------------G--AACAGTGAATT-----A----TCGAA-AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTAA---CC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCG----------------------------------C---TTCAACCATACAAAGCCAATA-------------------CAAAA--------------------G----TAAGT--G
droRho1 scf7180000780066:73495-73641 + GCT--------------------------------AACTGTGATCA-----A----ACA-A-AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTA-CATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCG----------------------------------CTACTTCAACCATATAAATACAATA-------------------CAAAA--------------------G----TAAGT--G
droBia1 scf7180000302143:3059938-3060085 - GCA--------------------------------AAGTGTGAAGC-----A----CCCGA-AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTC-TGTC---------TCTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCG----------------------------------CAACGTAAACTGAA-AAAT-----A------CGTG---------CCAAA--------------------G----TAAGTGAG
droTak1 scf7180000415384:83891-84028 + GCT--------------------------------TATTGTGAACC-----A----ACCAA-AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTC-TATA---------TCTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----G----------------------------------CA------ACCAAAGAAAT--AATC-------------------TCAAA--------------------G----TAAGTGAT
droEug1 scf7180000409474:2396703-2396839 + GCT--------------------------------AATAGTGAATCT----A----CCAAAACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATT-TAAC---------TCACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCA----------------------------------AGACTTTAAACT--------------------------------GAAAA--------------------G----TAAGT--G
dm3 chr2R:15549045-15549194 - dme-mir-3 Known_mirbase GCT--------------------------------AATTGTGAGCC-----A----CCT-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC-AATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCG----------------------------------CAACTTCAAATCAA-T--T-AAATC-----------AAAAAAT-CAAGA--------------------G----TAAGT--G
droSim2 2r:16196317-16196464 - dsi-mir-3 Known_mirbase GCT--------------------------------AATTGTGAACC-----A----CCA-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCC-AATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCG----------------------------------CTACTTCAAATCAA-C-----AATC-----------CAAAAAG-CAAGA--------------------G----TAAGT--G
droSec2 scaffold_1:13063778-13063921 - dse-mir-3 Known_mirbase GCT--------------------------------AATTGTGAATC-----A----CCA-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC-AATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCG----------------------------------CAACTACAAATCAA-C-----AATC-----------AAAAAAT-CA----------------------------AGAGT--A
droYak3 2R:13623592-13623745 + dya-mir-3 Known_mirbase GCAGCC-----------------------------AAGTGTGAACC-----A----TCA-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTC-CATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACG----------------------------------CAGCTACAAATCAA-CAGT--AATG-----------CAAAAGA-GAAGA--------------------G----TAAGT--G
droEre2 scaffold_4845:9749299-9749438 - der-mir-3 Known_mirbase GCC--------------------------------AATTGTGAACC-----C----ACC-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTC-TATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACG----------------------------------CAACTACAAATCAA-C-----AA---------------CAA------AT--------------------G---CAGAGT--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAATACAATTGGAGTGTTAAAAAAA-----------AAGGAGAGTA-----ATCGAATT-T-AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTT-CATGTGATAATTCTCTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACCCAAA----------------------------------A--------AG----------TTAGCCA------ACCAA--A--------------------CTTAGTGAGT--GSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................22142754.0042754092642474182
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................211559.0055921115441
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................201368.003680203651
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................201286.002860622771
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................231278.002780302741
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21151.00510110400
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23143.0043010420
...........................................................................................................................ACTGGGCAAAGTGTGTCTCATA......................................................................................................................................22140.0040000400
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................22139.0039000390
............................................................................GGATGCATTTTGTGCAGTTATG.....................................................................................................................................................................................22136.0036000360
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22129.0029010280
.......................................................AATT-T-AGACCATGATTTTG...........................................................................................................................................................................................................19119.0019010180
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22118.0018000180
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................23113.0013000130
..........................................................................TGGGATGCATTTTGTGCAGTTA.......................................................................................................................................................................................22111.0011000110
........................................................ATT-T-AGACCATGATTTTG...........................................................................................................................................................................................................18110.0010000100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2419.00901080
..........................................................................TGGGATGCATTTTGTGCAGTT........................................................................................................................................................................................2118.00800080
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1917.00700070
......................................................................................................................TCATCACTGGGCAAAGTGTGTC...........................................................................................................................................2216.00600060
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATA......................................................................................................................................2416.00600060
..................................................................................................TCTT-CATGTGATAATTCTCTCA..............................................................................................................................................................2216.00600060
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................1815.00501040
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................1915.00500050
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1914.00400040
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2114.00400040
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2014.00404000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2114.00400040
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2313.00300030
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................1813.00300030
..........................................................................................................................CACTGGGCAAAGTGTGTCT..........................................................................................................................................1912.00202000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTA.........................................................................................................................................2112.00200020
.......................................................................................................................CATCACTGGGCAAAGTGTGTCT..........................................................................................................................................2212.00200020
...........................................................................................................................ACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2212.00200020
...............................................................................................................................................TAATTTTGGTAACCATATC.....................................................................................................................1912.00200020
.........................................................................................................................TCACTGGGCAAAGTGTGTCCA.........................................................................................................................................2112.00200020
.........................................................................................................................TCACTGGGCAAAGTGTGTCTAG........................................................................................................................................2211.00100010
........................................................................................................................ATCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2311.00100010
......................................................................................................................TCATCACTGGGCAAAGTGTGT............................................................................................................................................2111.00100010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT......................................................................................................................................2411.00100010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC.....................................................................................................................................2511.00100010
............................................................................GGATGCATTTTGTGCAGTTAT......................................................................................................................................................................................2111.00100010
.........................................................................................................................TCACTGGGCAAAGTGTGTA...........................................................................................................................................1911.00100010
..........................................................T-T-AGACCATGATTTTGGGA........................................................................................................................................................................................................1911.00100010
..............................................................................ATGCATTTTGTGCAGTTATGT....................................................................................................................................................................................2111.00100010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATATA....................................................................................................................................2611.00100010
..........................................................................TGGGATGCATTTTGTGCAGTTT.......................................................................................................................................................................................2211.00100010
.........................................................................................................................TCACTGGGCAAAGTGTGTTCA.........................................................................................................................................2140.25100010
droVir3
AAATAAAACAATATTATTAAATAAA-----------AATA----CC-----AGAATCTC-A-TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTG-CCTC---CAAA--ACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAACG--CAG------CTCAGATATTCCAGTGT---TT------------------------------C-------------------------------------AGTGT--GSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................22119010.001901033151096123111112921621211257223111152681821564212538752531620025581421386315147325619155223421000292832712000461683430001003181471744572
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2111472.0014722534100000010013301100000000000001190528778351000038285547416017171044300047630001857200000266561042028
............................................................................GGATGCATTTTGTGCGGTTATG.....................................................................................................................................................................................2211462.00146200031000000001110000000000000100001120165203381528000011060000000000000070000000300000000110
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................231518.00518000150000000001001000000000000000300755815867000003122121000010001241000151230000001771064
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................221409.0040900038000000000200000000000010000011910990000116512741633141200057110001111650010005428382012
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................201167.00167001350000000001000001000001001101601225245100001050232300100003180000000300000041105
.......................................................TCTC-A-TAGCTCTGCTTTTG...........................................................................................................................................................................................................191123.0012300020000000000000000000000000000130920146100000110000000000000000000001100000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................201106.0010600000000000000100000000000000000407163617000001000000000000000230000000000000010000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23170.0070000120000000000000000000000000000204714500000231112020111000130000000200000011210
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22161.0061000190000000001000000000000000000200110000000010000000000000201000020300000072100
............................................................................GGATGCATTTTGTGCGGTTAT......................................................................................................................................................................................21158.005800020000000001000000000000000000206793100000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................24149.004900030000000000000000000000010000406711500000010100000000000030000111200000010010
......................................................ATCTC-A-TAGCTCTGCTTTTG...........................................................................................................................................................................................................20145.0045000000000000010000000000000000003031321900001200000000000000000000001000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAA.....................................................................................................................................25120.00200001000000001000000000000000000010127400000000000000000000020000001000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................20118.001800018000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.......................................................................................................................................23115.00150003000000000000000000000000000000000000000102023021000000000000000000000000001
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21115.00150010000000000000000000010000000010212200000000000000000000050000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................24114.00140002000000000000000000000000000000000000000102112001100000020000000000000010000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22114.00140100000000000000000000000000000000102000000000000010000000080000000000000000001
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................19113.00130002000000000000000000000000010000111000000010021110000000010000000000000000000
........................................................CTC-A-TAGCTCTGCTTTTG...........................................................................................................................................................................................................18113.00130000000000000000000000000000000010211500002010000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAA....................................................................................................................................26111.00110000000000000100000000000000000000132000000000000000000000010000001000000010100
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2119.0090000000000000000000000000000000020130300000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................2316.0060004000000000000000000000000000000100000000000000000000000000000000000000000100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT......................................................................................................................................2416.0060002000000000000000000000000000000012100000000000000000000000000000000000000000
........................................................................................................................ATCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2316.0060000000000000000000000000000000000100100000010100000000000010000010000000000000
...............................................................................................................................................AAATTGTGGCTACCAGAGAA....................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000004011
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAAA...................................................................................................................................2715.0050000000000000000000000000000000000103000000000000000000000000001000000000000000
...............................................................................................................................................AAATTGTGGCTACCAGAGA.....................................................................................................................1915.0050000000000000000000000000000000000001000000000000000000000000000000100000001101
.....................................................AATCTC-A-TAGCTCTGCTTTTG...........................................................................................................................................................................................................2115.0050000000000000000000000000000000000000300001000000000000000000000000100000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1915.0050001000000000000000000000000000000040000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACT......................................................................................................................................2415.0050000000000000000000000000000000000000000000100003100000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2114.0040000000000000000000000000000000000102100000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTA.........................................................................................................................................2114.0040000000000000000000000000001000000001100000000000000000000010000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATC......................................................................................................................................2414.0040001000000000000000000000000000000000000000010101000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2314.0040001000000000000000000000000000000021000000000000000000000000000000000000000000
...............................................................................................................................................AAATTGTGGCTACCAGAG......................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000010000000100000020000
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1914.0040001000000000000000000000000000000001000000000001000000000010000000000000000000
............................................................................GGATGCATTTTGTGCGGTTATC.....................................................................................................................................................................................2213.0030000000000000000000000000000000000010000001000000000000000010000000000000000000
...............................................................................................................................................AAATTGTGGCTACCAGAGAAAATAAA..............................................................................................................2613.0030001000000000000000000000000000000000000000000000000000000000000000000000001010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC......................................................................................................................................2413.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATCT.....................................................................................................................................2513.0030000000000000000000000000000000000000000000110000010000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCCT.......................................................................................................................................2313.0030000000000000000000000000000000000000000000100010000000000000000000000000001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC.....................................................................................................................................2513.0030002000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................GGATGCATTTTGTGCGGTTA.......................................................................................................................................................................................2013.0030000000000000000000000000000000010100100000000000000000000000000000000000000000
............................................................................GGATGCATTTTGTGCGGTTATGT....................................................................................................................................................................................2312.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2212.0020000000000000000000000000000000000101000000000000000000000000000000000000000000
........................................................CTC-A-TAGCTCTGCTTT.............................................................................................................................................................................................................1612.0020000000000000000000000000000000000000000000110000000000000000000000000000000000
............................................................................GGATGCATTTTGTGCGGTTATT.....................................................................................................................................................................................2212.0020000000000000000000000000000000001000000000000000000000000010000000000000000000
............................................................................GGATGCATTTTGTGCGGTTATGA....................................................................................................................................................................................2312.0020000000000000000000000000000000010010000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACC......................................................................................................................................2412.0020000000000000000000000000000000000000000000000001000000000000000000000000010000
...........................................................................................................................ACTGGGCAAAGTGTGTCT..........................................................................................................................................1812.0020000000000000000000000000000000000001100000000000000000000000000000000000000000
..................................................................................................TCTG-CCTC---CAAA--ACC................................................................................................................................................................1512.0020000000000000000000000000000000000000000000000020000000000000000000000000000000
...............................................................................................................................................AAATTGTGGCTACCAGAGAAAATAAC..............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000002000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CC-----AGAATCTC-A-TAGCTCTGCTTTTG...........................................................................................................................................................................................................2512.0020000000000000000000000000000000000000100000000000000000000000000000100000000000
.........................................................................................................................TCACTGGGCAAAGTG...............................................................................................................................................1531.3340000000000000000000000000000000000000000000021000010000000000000000000000000000
.................................................................................CATTTTGTGCGGTTATG.....................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................TTTGTGCGGTTATGTCTG-................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTAC........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................GGATGCATTTTGTGCGGTTATGC....................................................................................................................................................................................2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................GGGATGCATTTTGTGCGGTTATG.....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAGC......................................................................................................................................2411.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
droMoj3
AAACGAAACAGC------AAGGAAAAAGT-------CCAGTCAATTCAACGGAACTCTC-G-CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAAC-GATT---GGAA--ACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACA------AAGGAGGAGTGTTTCAG---TTCC----------------------------------------------------------------------------AGTGTTT--CSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2219703.0097031138284452572444
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2114606.00460622962343021
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................2011411.0014115891313121
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................201415.0041500004150
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................221293.00293226012640
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................221214.00214030001840
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................231114.0011407101060
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................23178.007802600511
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20145.00450370071
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................19142.00420201390
.......................................................................................................................CATCACTGGGCAAAGTGTGTCT..........................................................................................................................................22133.00330500280
................................................................................................TCTAAC-GATT---GGAA--ACCCA..............................................................................................................................................................19131.00310100300
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATC......................................................................................................................................24130.00300200280
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................23125.00250100240
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................24122.00221600150
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21119.00193400111
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTC.......................................................................................................................................23119.00190200170
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22118.00180130050
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.......................................................................................................................................23117.00171000160
.......................................................TCTC-G-CAGCTCTACTTTTG...........................................................................................................................................................................................................19113.0013070060
.......................................................................................................................CATCACTGGGCAAAGTGTGTCC..........................................................................................................................................22113.00130000130
......................................................CTCTC-G-CAGCTCTACTTTTG...........................................................................................................................................................................................................20111.0011050060
...............................................................................................................................................AAATTGGGGCAACTAGCAC.....................................................................................................................19111.00110100100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2319.009020070
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2418.008020060
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1916.006010050
.....................................................ACTCTC-G-CAGCTCTACTTTTG...........................................................................................................................................................................................................2115.005000050
..........................................................................................................................CACTGGGCAAAGTGTGTCT..........................................................................................................................................1915.005000050
.........................................................................................................................TCACTGGGCAAAGTGTGTCTG.........................................................................................................................................2115.005010040
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1915.005030020
.........................................................................................................................TCACTGGGCAAAGTGTGTCTT.........................................................................................................................................2115.005000050
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2014.004000040
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT.....................................................................................................................................2514.004000040
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................2413.003000030
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTTC......................................................................................................................................2413.003000030
............................................................................................................................CTGGGCAAAGTGTGTCTC.........................................................................................................................................1813.003000030
...........................................................................................................................ACTGGGCAAAGTGTGTCT..........................................................................................................................................1813.003000030
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................1813.003010020
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTCC......................................................................................................................................2412.002000020
...........................................................................................................................ACTGGGCAAAGTGTGTCTCC........................................................................................................................................2012.002010010
........................................................CTC-G-CAGCTCTACTTTTG...........................................................................................................................................................................................................1812.002010010
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................1812.002010010
...............................................................................................................................................AAATTGGGGCAACTAGCACA------A.............................................................................................................2112.002000020
...............................................................................................................................................AAATTGGGGCAACTAGCACA------..............................................................................................................2012.002000020
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTCT......................................................................................................................................2412.002000020
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCCT.......................................................................................................................................2311.001010000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCCC.......................................................................................................................................2311.001000010
...............................................................................................................................................AAATTGGGGCAACTAGCACT------..............................................................................................................2011.001000010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC......................................................................................................................................2411.001000010
...........................................................................................................................ACTGGGCAAAGTGTGTCTCT........................................................................................................................................2011.001000010
droGri2
AAAGTT---------------------GTACATAAAAATGCTTGCC-----AAATTTTC-A-TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACTCTT---GTAA--AACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAT----------------------------------------------------AATATAAAATGGCAA--TTT------TTGCAGTGTTTTGCAGTGTTTTG----TGTGT--GSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2221.50321
..........................................................................................................................CACTGGGCAAAGTGTGTCTCT........................................................................................................................................2120.50110
dp5
GCGATCAGCGAGCGTCTCAGCGCAC-----------ATTGTGAACG-----ACGATACC-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA-CGTG--ATCAT--CCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTGTAC----------------------------------A--------AG----------AATGGCG------AT-AA--A--------------------GTGTGTGTGT--CSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................22114794.001479407242804011228235010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2111277.0012771111840332002000
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................201222.0022201512408102000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................221113.00113054805901000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21199.0099079201800000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20192.009205308400000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................22185.0085002905402000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23154.00540132901200000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................23145.0045052201800000
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................20143.004300420100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22131.003100103000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................23126.002602160800000
............................................................................GGATGCATTTTGTGCAGTTATG.....................................................................................................................................................................................22125.002501402000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................23122.002202150500000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAGG......................................................................................................................................22115.001500001500000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................20113.001301120000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................24112.00120090201000
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................19111.00110140212010
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1916.0060200400000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1915.0050100400000
.......................................................TACC-G-AGGCAACGATCCTG...........................................................................................................................................................................................................1915.0050010400000
..........................................................................TGGGATGCATTTTGTGCAGTTA.......................................................................................................................................................................................2214.0040010300000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2414.0040020200000
...........................................................................GGGATGCATTTTGTGCAGTTATG.....................................................................................................................................................................................2314.0040010300000
............................................................................................................................CTGGGCAAAGTGTGTCTCAGGA.....................................................................................................................................2213.0030000300000
...........................................................................................................................ACTGGGCAAAGTGTGTCT..........................................................................................................................................1813.0030010200000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCC........................................................................................................................................2113.0030120000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTT.........................................................................................................................................2113.0030020100000
.........................................................................CTGGGATGCATTTTGTGCAGTT........................................................................................................................................................................................2213.0030030000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACA......................................................................................................................................2412.0020000200000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTTC........................................................................................................................................2212.0020000200000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTG.........................................................................................................................................2112.0020010100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTC.......................................................................................................................................2312.0020010100000
..........................................................................TGGGATGCATTTTGTGCAGTT........................................................................................................................................................................................2112.0020000200000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCCA.......................................................................................................................................2312.0020000200000
.........................................................................................................................TCACTGGGCAAAGTGTGTCG..........................................................................................................................................2012.0020000001010
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAGGT.....................................................................................................................................2312.0020000200000
.....................................................GATACC-G-AGGCAACGATCCTG...........................................................................................................................................................................................................2111.0010000100000
........................................................ACC-G-AGGCAACGATCCTG...........................................................................................................................................................................................................1811.0010000100000
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................1811.0010100000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATC......................................................................................................................................2411.0010010000000
........................................................................................................................ATCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2311.0010100000000
droPer2
GCGATCAGCGAGCGTCTCAGCGCAC-----------ATTGTGAACG-----ACGATACC-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA-CGTG--ATCAT--CCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTGTAC----------------------------------A--------AG----------AATGGCG------AT-AA--A--------------------GTGTGTGTGT--CSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2211931.0019316727170718544
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................211281.00281198866045
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................20145.004511281014
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20115.00150015000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22112.00120012000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................2117.007061000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................2216.006103011
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2315.005004010
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAGG......................................................................................................................................2214.004004000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................2214.004103000
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................1914.004013000
............................................................................GGATGCATTTTGTGCAGTTATG.....................................................................................................................................................................................2213.003003000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2012.002020000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2312.002011000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTAT........................................................................................................................................2211.001001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2411.001000010
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................2011.001000001
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT......................................................................................................................................2411.001000001
............................................................................................................................CTGGGCAAAGTGTGTCTCAGG......................................................................................................................................2111.001001000
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................1811.001001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2311.001001000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2111.001001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAGA......................................................................................................................................2411.001001000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1911.001001000
.....................................................................................TTGTGCAGTTATGTCTA-CGTG--ATCAT--CC.................................................................................................................................................................2811.001001000
droAna3
AAAGCC---------------------GTCCAGACATCTGTGAGCC-----C----CCAAC-TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACC-AAAA---ATAT--ATCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACG----------------------------------AAGAATCAATTCAT-C----------------------------AAATT--------------------G----TAAGT--GSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2211247.001247197249603696564
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................211153.001532310719121
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................20147.004710293221
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21122.00221812001
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22111.0011019100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23110.0010421111
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................2219.009152100
............................................................................GGACGCATTTTGTGCAGTTATG.....................................................................................................................................................................................2217.007043000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2317.007231100
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................1917.007070000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2415.005410000
..........................................................................TGGGACGCATTTTGTGCAGTTA.......................................................................................................................................................................................2213.003003000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................2013.003003000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2313.003300000
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................2013.003030000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATC......................................................................................................................................2412.002020000
..........................................................................TGGGACGCATTTTGTGCAGTT........................................................................................................................................................................................2112.002002000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2012.002110000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTT.........................................................................................................................................2112.002100010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................2212.002002000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2312.002020000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................2312.002101000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1912.002002000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTAC........................................................................................................................................2211.001001000
........................................................CCAAC-TGGCTACGATCTTG...........................................................................................................................................................................................................1911.001001000
..........................................................................................................................CACTGGGCAAAGTGTGTCT..........................................................................................................................................1911.001100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT......................................................................................................................................2411.001100000
.......................................................................................................................CATCACTGGGCAAAGTGTGTCT..........................................................................................................................................2211.001010000
.........................................................................TTGGGACGCATTTTGTGCAGTT........................................................................................................................................................................................2211.001000001
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................1811.001000100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATTC.....................................................................................................................................2511.001010000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATA......................................................................................................................................2411.001000100
.......................................................................................................................CATCACTGGGCAAAGTGTGTCC..........................................................................................................................................2211.001010000
...................................................C----CCAAC-TGGCTACGATCTTG...........................................................................................................................................................................................................2011.001010000
.........................................................................................................................TCACTGGGCAAAGTGTGTCA..........................................................................................................................................2011.001010000
droBip1
ACGTCCA-------------------------GAAATCTGTGAATC-----CTCCGCTC-C-GGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATC-AAAA---TCAT--AACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACA----------------------------------AAGAATCCAGTC-----------------------------AT-CAAAT--------------------G----TAAGT--GSizeHit CountTotal NormTotal
No Reads
droKik1
GCAAT-------------------------------CCAGTGAACC-----A----GCA-A-AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAA-CGTG--AT--A--CTCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACG---------GAG----ACTCCAA---CAGCAG--C-------ACCAAGAAAGTAAAGTT---------C-CAAAAGT-GA----------------------------AAAGA--ASizeHit CountTotal NormTotal
No Reads
droFic1
GTA--------------------------------AAGTGTTAACT-----A----CCAAA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTA---TC---------TCTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCG----------------------------------AATCTTCAAACAAACCAAT--AATC-----------C-----------A--------------------A----CAAGT--GSizeHit CountTotal NormTotal
No Reads
droEle1
TCTC----------------------------G--AACAGTGAATT-----A----TCGAA-AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTAA---CC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCG----------------------------------C---TTCAACCATACAAAGCCAATA-------------------CAAAA--------------------G----TAAGT--GSizeHit CountTotal NormTotal
No Reads
droRho1
GCT--------------------------------AACTGTGATCA-----A----ACA-A-AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTA-CATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCG----------------------------------CTACTTCAACCATATAAATACAATA-------------------CAAAA--------------------G----TAAGT--GSizeHit CountTotal NormTotal
No Reads
droBia1
GCA--------------------------------AAGTGTGAAGC-----A----CCCGA-AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTC-TGTC---------TCTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCG----------------------------------CAACGTAAACTGAA-AAAT-----A------CGTG---------CCAAA--------------------G----TAAGTGAGSizeHit CountTotal NormTotal
No Reads
droTak1
GCT--------------------------------TATTGTGAACC-----A----ACCAA-AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTC-TATA---------TCTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----G----------------------------------CA------ACCAAAGAAAT--AATC-------------------TCAAA--------------------G----TAAGTGATSizeHit CountTotal NormTotal
No Reads
droEug1
GCT--------------------------------AATAGTGAATCT----A----CCAAAACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATT-TAAC---------TCACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCA----------------------------------AGACTTTAAACT--------------------------------GAAAA--------------------G----TAAGT--GSizeHit CountTotal NormTotal
No Reads
dm3
GCT--------------------------------AATTGTGAGCC-----A----CCT-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC-AATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCG----------------------------------CAACTTCAAATCAA-T--T-AAATC-----------AAAAAAT-CAAGA--------------------G----TAAGT--GSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2211109209.001109209000060431180437422110000000033283020130411251055934828207775138719176412695202001000000000000000000002102248678858606657869457105113478212488872219434029283213502133331146071015929552111103018260701811000031440088122137463126036617675369405421829100119465183210000012180316751620191012511258113016395224714152615921012956107000001127361221001437116545124610951033913566557132012000016584180491179251145131100353111022165710316582013790176921632795351025415973118132499344652561144152715622161122546513749212550181347412589103127392139133418942913488527535511717984124979362234929740
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................20152059.0052059000000019293000100000000220000100000466440203000130510000250100010000000000000000000000001876546634943310001002222110008478600018290780300001010100100000000004184164811421116700033000000000305160490200400111050004103701000090100000030008000480041801410030017200000001852290112121140001003210010400542911111000112244424344127310700160020122050505245401626123013263401302030110
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................21128441.0028441000000810242000000001000153001000000072110030018023010015020000000000000000000000000000102745578610711990102060051332051105563433500483821580700002100301300000011001919253527898557567010311211000000350180670400300002000000201100100010320000010000200013086483883124829228910250000640739001000001021123410101001262171003516412600423722412260147032803323113126481331251333162524236211631137040
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20117909.001790900000002000000000000000000000000003972110101201000120020000000000000000000000000000287691200000000000100000000400001010000000000000000000000000143131452669976589101400150000000001000000000000000000000000011000010000000000000000003110000002517000000001381320000000100100002000001000100002010010521000001000863445017000110100000120470101210202110780002010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2316909.0069090000201628810000000000002000101000003911011000010010030100020000000000000000000010007031861529522910010200100000011000223550009431800000000000000000000000003618029141091180000100000000000000022000000101000000000021010001000000009100000000011016180542460690000000010796000000010000000100000000000010000310002500000000023077001015040000002210300100100002000251000010
............................................................................GGATGCATCTTGTGCAGTTATG.....................................................................................................................................................................................2214675.004675000000266601000000000000000000000000590000000000000000000000000000000000000000000000141798428969000000000000022500103187193000111351600000000000000000000000001282505364690000000000000000000000000000000000000000000000000000000000000000000000000000001060000000029130000000000000000000001000000000000000000100000000262300000000000000020000000001100000000010000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................2213589.003589000000000000000000000010000000000000001000601000312000000000000000000000000000000171510649000000000000000100001300031020210000000102200000000002042634731142840101000000000000000021000000000001000000000000000000000000000000000000000000010100000000685900010000001000001100000000000000000000100000000002197500100001110000000010010000000001040000010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................2212003.00200300000015000000000000002000000000001000000000000000002000000000000000000000000000069215327170010030000000003000011200020010000000100000010000000000236451372101970000010000000000000020000000000000000000010010000000000000000000000000010100011020000000047300000000000000000100000000000000000000001000001000484100000001100000100011000010000011010100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACTG.....................................................................................................................................2511844.001844000000000000000000000000000000000018390000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2311758.00175800000018800000000000000100000000009000100000100000000000000000000000000000000000081171017914000000011000000000000800032012300000000000000000000000092248274305000000000000000000000000000000010010000000000000000000000000000000000110003010440210000000046340000000000000000000010000000000010000000000000000561300000000000000000000000000000000030000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................2111525.00152500000025200000000000000000000000006000000000000000000000000000000000000000000000079415622290000000000000001000003000120020000000000000000000000007911210730000001000000000000010000000000000000000000000000000000000000000000000000001200040300000000181800000000000000001000000000000000000001000000000008607001000100001020000000000201000000120000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................2211316.001316000000616200000000000000000000000000000000000000000000000000000000000000000000000080208142000000000000000000010080002310600100000000000000000000043827539310000000000000000000011000000000000000000000000000000000000000000000000000000000000000000282910000000001000001000000000001000001000000000001007774001000000000001100010000000001000160000000
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................191965.009650000000000000000000000000000000000219000000000300000000000000000000000000000000000013411156000000000000000002000300051080000000000000000000000001761131073019000100000000000000000000000000000100001000010000000000000000010000000010000003011000000029330000000000000000000000000000000000000000000000000176600000000000000000000000000000000010001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................231889.0088900000012100000000000000000000000002100000000000000000000000000000000000000000000004714192370000000000000001000010000150070000000000000000000000005212716032000000000000000000000000000000000000000000000000000000000000000000000000000110114041000000014190000000000000000000000000000000000000001000000100295200100000000000000000000000000010030000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................241509.00509000000010000000000000000000000000020000000100000000000000000000000000000000000000151714250000000001000000000000000600000000000000000000000000046112135124000010000000000000000000000000000000000000010000000000000000000000000000003011290110000000034000000000000000000000000000000000000000000000000075000000020000000121000000000000000010000000
...................................................A----CCT-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................191450.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000074805144910000100020000000000990001200400000000000000000000000007000300000000000000000000000000000000000000000000000000000000000000000000001000200010000000000210000000000000000200000000000000000000000000000000134100000000000000000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................191386.00386000000000000000000000000000000000010001000000000001000000000000000000000000000000203010000000000000000000000000000000000000000000000000000023554622610000000000000000000000000000000000000000000000000000000000000000000010000000050400000000490000000000000000000000000000000000000000000000000199100100000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................181324.003240000000000000000000000000000000000001000000020000000000000000000000000000000000013165540900000000000000000000210002120600000000000000000000000010550040000000000000000000000000000000000000000000000000010000000000000000000000000010000000000713000000000000000000000000110000000000000000000000089800000000000000000000000000000000020000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................221320.0032000000010000000000000000000000000004000000000000000000000000000000000000000000000074221162200000000000000000000150001400200000000000000000000000059816000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119100000000000000000000000000000000000000000
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................191303.0030300000000000000000000000000000000000000000000000000000000000000000000000000000000033023000000000000000000000100001000000000000000000000000002754320000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000230000000000000000000000000000000000000000000000000165300000000000000000000000000000100020000000
............................................................................GGATGCATCTTGTGCAGTTA.......................................................................................................................................................................................201295.00295000000000000000000000000000000000025000000000000000000000000000000000000000000000007007130000000000000000000061000000700000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................221295.00295000000100000000000000000000000000030000000000000000000000000000000000000000000000386710400000000000000000000010005003000000000000000000000000171974900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000740000000000000000000000000000000000000000000000000146300000000000000000000100000000000000000000
.............................................C-----A----CCT-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................201276.00276000000260000000000000000000000000040000000000000000000000000000000000000000000000614442370000000000000000000045000122080000000000000000000000001100060000000000000000000000000000000000000000000000000000000000000000000000000010003010000000011000000000000000010000000000000000000000000000000055400000000000000000000000000000000000000010
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................211263.0026300000000000000000000000000000000004000000000000000000000000000000000000000000000021141711310000000000000000000020008100000000000000000000000000103140021000000000000000000000000000000000000000000000000000000000000000000000000010004000000000045000000000000000000000000000000000010000000000000080100000000000010000000000000000000000000000
............................................................................GGATGCATCTTGTGCAGTTAT......................................................................................................................................................................................211247.0024700000027000000000000000000000000001900000000000000000000000000000000000000000000007783770000001000000010000006140009110000000000000000000000000241000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
........................................................................................................................ATCACTGGGCAAAGTGTGTCTCA........................................................................................................................................231246.0024600000000010000000000000000000000000000000000000000000000000000000000000000000000050841570000010000000000000065000800400000000000000000000000041480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000330000000000000000100000000000000000000000000000000103100000000000000000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................221217.0021700000001000000000000000000000000002000000000100000000000000000000000000000000000071102700000000001000000000500002000000000000000000000000000847391400000000000000000000000000000000000000000000000000000000000000000000000000000001010000000022000000000010000000000000000000000000000000000000063000000000000000000000000000000000000000000
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................181146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000012780000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000240000000000000000000000000000000000000000000000000107100000000000000000000000000000000000000000
........................................................CCT-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................181137.0013700000000000000000000000000000000000000000000000000000000000000000000000000000000030101772000000000000000000000300004008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000036000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................241136.001360000000000000000000000000000000000100000000000000000000000000000000000000000000004010100000000000000000000000000000000000000000000000000000151838000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000014000000000000000000000000000000000000000000000000048000000000001000000000000000000000020000000
...........................................................................GGGATGCATCTTGTGCAGTTATG.....................................................................................................................................................................................231107.001070000000100000000000000000000000000100000000000000000000000000000000000000000000002590015000000000000000000002110003000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------C.................................................................................21189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081514300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000042100000000000000000000000000000000120000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCC........................................................................................................................................20187.00870000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000059000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATA......................................................................................................................................24179.0079000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000200000000000000000000000000062416600000000000000000000000000000000000000000000000000000000000000000000000000000000010000000012000000000000000000000000000000000000000000000000018000000000000000100000000000000000000000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................20177.007700000000000000000000000000000000003700000000000000000000000000000000000000000000005043001000000000000000000000003200000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACT......................................................................................................................................24171.00710000000000000000000000000000000000500000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000008000000000000000000000000000000000020000000
............................................................................GGATGCATCTTGTGCAGTTATT.....................................................................................................................................................................................22170.00700000000000000000000000000000000000000000000000000000000000000000000000000000000002613002000000000000000000001200000000000000000000000000000003121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCA..........................................................................................................................................20163.00630000000000000000000000000000000000320000000000000000000000000000000000000000000000602220000000000000000000000000100100000000000000000000000032100100000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000007000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................20162.00620000000000000000000000000000000000480000000000000000000000000000000000000000000000002200000000000000000000000000000100000000000000000000000020100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCT..........................................................................................................................................18161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000395006000000000000000000000000000000000000000000000000000000000000010000000000000000010000000023000000000000000000000000000000000000000001000000025200100001000000000000000000000000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCT........................................................................................................................................20160.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT......................................................................................................................................24152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000005903100000000000000000000000003000000000000000000000000000437000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000011000000000000000000000000000000000000000000000000011000000000000000000100000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................23152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000030600000000000000000000000000010010000000000000000000000001093000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000018000000000000000000000000000000000000000000
...............................................................................TGCATCTTGTGCAGTTATGTTT..................................................................................................................................................................................22147.004700000006000000000000000000000000000000000000000000000000000000000000000000000000010112340000000000000007000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTT.........................................................................................................................................21147.00470000001220000000000000000000000000500000001010000000000000000000000000000000000003031000000000000000000000000000000000000000000000000000100044002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000014000000000000000000000000100000000000000000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------CA................................................................................22144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000330200000000010000000000000000000000000000000000000000000135020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------..................................................................................20140.0040000000000000000000000000000000000080000000000000000000000000000000000000000000000300000000000000000000000003000000500000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000008400000000000000000000000000000000000000000
droSim2
GCT--------------------------------AATTGTGAACC-----A----CCA-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCC-AATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCG----------------------------------CTACTTCAAATCAA-C-----AATC-----------CAAAAAG-CAAGA--------------------G----TAAGT--GSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................22134191.003419160507210612158144211128425774200000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2112151.002151239156730011157214217301000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................231527.005270010016123826501500000
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................201215.00215006010037010822500000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20177.007700100000161404600000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22141.0041000000003203600000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22140.00401016000002301800000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................22131.0031001000002102700000
...................................................A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................19129.00290016000000001300000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21120.002000110000650700000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................22115.001500000000590100000
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................19114.001400001000760000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................24114.0014000000001040000000
.............................................C-----A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................20113.001300900000000400000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23110.001000200000520001000
............................................................................GGATGCATCTTGTGCAGTTATG.....................................................................................................................................................................................2219.00900000000100800000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2219.00900000000360000000
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1918.00800200000130200000
.........................................................................................................................TCACTGGGCAAAGTGTG.............................................................................................................................................1717.00700000000142000000
........................................................CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................1815.00500500000000000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2115.00500000000410000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................2314.00400100000100200000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2014.00401300000000000000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------C.................................................................................2113.00300300000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2413.00300000000000102000
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................1813.00300000000201000000
........................................................................................................................ATCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2313.00300000000210000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTA.........................................................................................................................................2112.00200000000000200000
............................................................................................................................CTGGGCAAAGTGTGTCTCAAGA.....................................................................................................................................2212.00200000000200000000
...............................................................................TGCATCTTGTGCAGTTATGTTC..................................................................................................................................................................................2212.00200000000110000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2312.00200000000110000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT.....................................................................................................................................2512.00200000000000002000
................................................................................................................................GCAAAGTGTGTCTCA........................................................................................................................................1521.50300000000210000000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------..................................................................................2011.00100100000000000000
...........................................ACC-----A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................2211.00100000000000100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................2411.00100000000100000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTTT........................................................................................................................................2211.00100000000000100000
........................................................................................................................ATCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2211.00100100000000000000
...............................................................................TGCATCTTGTGCAGTTATGTTT..................................................................................................................................................................................2211.00100000000010000000
...........................................................................................................................ACTGGGCAAAGTGTGTCT..........................................................................................................................................1811.00100000000100000000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------CT................................................................................2211.00100100000000000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTTG........................................................................................................................................2211.00100000000000100000
droSec2
GCT--------------------------------AATTGTGAATC-----A----CCA-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC-AATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCG----------------------------------CAACTACAAATCAA-C-----AATC-----------AAAAAAT-CA----------------------------AGAGT--ASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................22126152.002615235748237012046
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2111658.001658294159431
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................201434.004345041910
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................201188.001882017313
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................23178.007840704
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21163.0063290304
...................................................A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................19149.004950440
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23135.003500350
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................18131.003100301
............................................................................GGATGCATCTTGTGCAGTTATG.....................................................................................................................................................................................22129.002900290
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22128.002800280
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................19124.002401221
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22123.002300203
.............................................C-----A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................20118.001820142
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................22116.001610150
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................19115.001500150
........................................................CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................18111.001110100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................23110.00100091
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1916.0060060
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................1816.0060060
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2415.0051031
........................................................................................................................ATCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2315.0052030
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2115.0050050
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2414.0040040
.........................................................................................................................TCACTGGGCAAAGTGTGTCTT.........................................................................................................................................2114.0040040
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2014.0044000
...............................................................................................................................................AGATCCTGGCCACATCGTCG----------------------------------..................................................................................2013.0030030
...........................................................................GGGATGCATCTTGTGCAGTTATG.....................................................................................................................................................................................2312.0020020
...........................................................................................................................ACTGGGCAAAGTGTGTCT..........................................................................................................................................1812.0021010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACA......................................................................................................................................2412.0020020
.........................................................................................................................TCACTGGGCAAAGTGTGTCCA.........................................................................................................................................2112.0020020
.........................................................................................................................TCACTGGGCAAAGTGTGTCA..........................................................................................................................................2012.0020020
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC.....................................................................................................................................2512.0020020
........................................................................................................................ATCACTGGGCAAAGTGTGTCT..........................................................................................................................................2112.0020020
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2212.0020020
............................................TC-----A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................2112.0020020
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2111.0010010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACT......................................................................................................................................2411.0010010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTAT........................................................................................................................................2211.0010010
..........................................................................................................................CACTGGGCAAAGTGTGTCT..........................................................................................................................................1911.0010010
...........................................................................GGGATGCATCTTGTGCAGTTAT......................................................................................................................................................................................2211.0010010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT......................................................................................................................................2411.0010010
...........................................ATC-----A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................2211.0010001
..........................................AATC-----A----CCA-A-AGGTCCCGATCCTG...........................................................................................................................................................................................................2311.0010010
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................2211.0010010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.......................................................................................................................................2311.0010010
...............................................................................................................................................AGATCCTGGCCACATCGT......................................................................................................................1811.0010010
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2211.0010010
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2211.0010010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC.....................................................................................................................................2511.0010010
........................................................................................................................ATCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2211.0010010
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATA......................................................................................................................................2411.0010010
droYak3
GCAGCC-----------------------------AAGTGTGAACC-----A----TCA-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTC-CATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACG----------------------------------CAGCTACAAATCAA-CAGT--AATG-----------CAAAAGA-GAAGA--------------------G----TAAGT--GSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................22119463.00194630339095102502347150000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................2113579.0035795833042572300000
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................201410.0041000378302000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................201149.001490014900000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................221126.001260075480300000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................231120.001200077430000000
............................................................................GGATGCATCTTGTGCAGTCATG.....................................................................................................................................................................................221114.001140069450000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................221103.001030086160100000
...................................................A----TCA-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................19181.00810060210000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20176.00760010660000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21157.00570619320000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................23148.0048004530000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23147.0047004160000000
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................19141.0041003830000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................22130.0030006240000000
.............................................C-----A----TCA-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................20126.0026002330000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................24117.0017001700000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................22116.001600790000000
...........................................................................GGGATGCATCTTGTGCAGTCATG.....................................................................................................................................................................................23115.0015001230000000
...............................................................................................................................................AGATCTTGGCCACTTCGAC.....................................................................................................................19114.0014001220000000
.........................................................................CTGGGATGCATCTTGTGCAGTC........................................................................................................................................................................................22112.001200480000000
............................................CC-----A----TCA-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................21111.0011001010000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2419.00900630000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2017.00701600000000
........................................................TCA-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................1816.00600330000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2316.00600420000000
............................................................................GGATGCATCTTGTGCAGTC........................................................................................................................................................................................1915.00500410000000
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1914.00400220000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATC......................................................................................................................................2414.00400400000000
...........................................ACC-----A----TCA-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................2214.00400400000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2114.00400130000000
...............................................................................................................................................AGATCTTGGCCACTTCGACG----------------------------------C.................................................................................2114.00400400000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1913.00300120000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2213.00300210000000
...........................................................................GGGATGCATCTTGTGCAGTC........................................................................................................................................................................................2013.00300300000000
............................................................................GGATGCATCTTGTGCAGTCAT......................................................................................................................................................................................2113.00300210000000
...........................................................................GGGATGCATCTTGTGCAGTCA.......................................................................................................................................................................................2113.00300210000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTAC........................................................................................................................................2212.00200020000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCT........................................................................................................................................2012.00200110000000
...............................................................................................................................................AGATCTTGGCCACTTCGACG----------------------------------CAG...............................................................................2312.00200200000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACT......................................................................................................................................2412.00200200000000
..........................................AACC-----A----TCA-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................2312.00200200000000
.........................................................................................................................TCACTGGGCAAAGTGTGT............................................................................................................................................1812.00200110000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATA......................................................................................................................................2412.00200110000000
...............................................................................................................................................AGATCTTGGCCACTTCGACG----------------------------------..................................................................................2012.00200200000000
...............................................................................................................................................AGATCTTGGCCACTTCGACA----------------------------------..................................................................................2012.00200200000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT.....................................................................................................................................2512.00200200000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCACC......................................................................................................................................2412.00200200000000
............................................................................................................................CTGGGCAAAGTGTGTCTC.........................................................................................................................................1812.00200200000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.......................................................................................................................................2312.00200200000000
.............................................................................................................................TGGGCAAAGTGTGTCTCA........................................................................................................................................1811.00100010000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATAC.....................................................................................................................................2511.00100100000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTC.......................................................................................................................................2311.00100100000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTGT........................................................................................................................................2211.00100010000000
............................................CC-----A----TCA-A-AGGTCCTGATCCT............................................................................................................................................................................................................2011.00100100000000
droEre2
GCC--------------------------------AATTGTGAACC-----C----ACC-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTC-TATC---------TCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACG----------------------------------CAACTACAAATCAA-C-----AA---------------CAA------AT--------------------G---CAGAGT--ASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCA........................................................................................................................................2214885.00488511633276330829520
.........................................................................................................................TCACTGGGCAAAGTGTGTCTC.........................................................................................................................................211329.0032955180087250
..........................................................................................................................CACTGGGCAAAGTGTGTCTCA........................................................................................................................................21193.009389004000
.........................................................................................................................TCACTGGGCAAAGTGTGTCT..........................................................................................................................................20177.00771331030210
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................23140.0040203017000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCC........................................................................................................................................22129.002902126000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCA........................................................................................................................................20118.001840014000
...................................................C----ACC-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................19118.00188109000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCT........................................................................................................................................22116.00161509100
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................23110.00103502000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCG........................................................................................................................................2219.0091008000
.............................................C-----C----ACC-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................2019.0096102000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAC.......................................................................................................................................2318.0080305000
.........................................................................................................................TCACTGGGCAAAGTGTGTCC..........................................................................................................................................2018.0080800000
..........................................................................................................................CACTGGGCAAAGTGTGTCTC.........................................................................................................................................2017.0076100000
............................................................................GGATGCATCTTGTGCAGTTATG.....................................................................................................................................................................................2216.0066000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTG.........................................................................................................................................2114.0044000000
.........................................................................................................................TCACTGGGCAAAGTGTGTC...........................................................................................................................................1914.0041300000
..........................................................................................................................CACTGGGCAAAGTGTGTCT..........................................................................................................................................1913.0033000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAG.......................................................................................................................................2312.0022000000
...............................................................................................................................................AGATCCTGGCCACTTCGACG----------------------------------..................................................................................2012.0021001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTT.........................................................................................................................................2112.0020001010
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2212.0022000000
............................................................................................................................CTGGGCAAAGTGTGTCTCA........................................................................................................................................1912.0021001000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAA.......................................................................................................................................2112.0021001000
...........................................ACC-----C----ACC-A-AGGTCCTGATCCTG...........................................................................................................................................................................................................2212.0021100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA......................................................................................................................................2412.0022000000
............................................................................GGATGCATCTTGTGCAGTTA.......................................................................................................................................................................................2011.0010100000
...........................................................................................................................ACTGGGCAAAGTGTGTCTC.........................................................................................................................................1911.0010001000
.........................................................................................................................TCACTGGGCAAAGTGTGTCA..........................................................................................................................................2011.0010100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................2411.0010100000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................2311.0011000000
...........................................................................................................................ACTGGGCAAAGTGTGTCTCAAG......................................................................................................................................2211.0010001000
.............................................C-----C----ACC-A-AGGTCCTGATCC.............................................................................................................................................................................................................1811.0010100000
............................................................................................................................CTGGGCAAAGTGTGTCTCAAT......................................................................................................................................2111.0011000000
..........................................................................................................................CACTGGGCAAAGTGTGTCTCAT.......................................................................................................................................2211.0011000000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCATT......................................................................................................................................2411.0010100000
.........................................................................................................................TCACTGGGCAAAGTGTGTCTCTT.......................................................................................................................................2311.0010100000
...............................................................................................................................................AGATCCTGGCCACTTCGAC.....................................................................................................................1911.0010100000

Generated: 10/20/2015 at 11:47 PM