ID:

dwi-mir-13a

 Coordinate:

scf2_1100000004902:2143221-2143298 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.6 -31.4 -31.2

Flybase annnotation

pre_miRNA [Dwil\mir-13a-RM]; utr3 [utr3_minus_7789]; miRNA [Dwil\miR-13a-RA]

No Repeatable elements found

Sense Strand Reads

AGCCAACAAGTGTTTTTTTGGAATCCGTTCCGGCAAAAGATGGAATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCCATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATTCCTGCAACAGTATTCGAAATGGATGGTATCCTTAGAATATGT

******************************************(((((((.((((.(((((.((((((.((((((((.(((..................))).)))))))).)))))).))))).)))).))).)))).**************************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 V119

head

 M045

female body

 M020

head

 V117

male body
....................................................................................................TATCACAGCCATTTTGATGAGTT....................................................... 23 0 1 54258.00 54258 39856 12615 1282 247 258
....................................................................................................TATCACAGCCATTTTGATGAGT........................................................ 22 0 1 10521.00 10521 3641 6258 393 179 50
.........................................................CTCTTCAAGGGGGTTGTGAAATG.................................................................................................. 23 0 1 4092.00 4092 3299 772 4 2 15
....................................................................................................TATCACAGCCAGCTTGATGAGCT....................................................... 23 3 1 1192.00 1192 813 335 13 2 29
....................................................................................................TATCACAGCCATTTTGATGAG......................................................... 21 0 1 1119.00 1119 115 728 40 234 2
....................................................................................................TATCACAGCCATTTTGAAGAGT........................................................ 22 1 3 518.00 1554 218 1333 0 1 2
....................................................................................................TATCACGGCCATTTTGATGAGTT....................................................... 23 1 1 329.00 329 45 249 8 14 13
....................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................... 24 0 1 289.00 289 214 58 10 0 7
....................................................................................................TATCACATCCATTTTGATGAGTT....................................................... 23 1 1 255.00 255 231 24 0 0 0
....................................................................................................TATCACAGCCAGCTTGAGGAG......................................................... 21 3 4 225.75 903 250 608 17 6 22
......................................................................................................TCACAGCCAGCTTGATGAGCT....................................................... 21 3 4 188.00 752 327 389 3 0 33
....................................................................................................TATCACAGCCATTTTGATGAGCT....................................................... 23 1 1 158.00 158 116 41 0 0 1
.....................................................................................................ATCACAGCCATTTTGATGAGTT....................................................... 22 0 1 157.00 157 28 16 111 2 0
....................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................... 24 1 1 143.00 143 106 7 30 0 0
....................................................................................................TATCACAGCCAGCTTGATGAGC........................................................ 22 3 1 112.00 112 46 63 2 0 1
....................................................................................................TATCACAGCCATTTTGATG........................................................... 19 0 1 109.00 109 1 53 2 53 0
........................................................................................................ACAGCCATTTTGATGAGTT....................................................... 19 0 1 108.00 108 66 29 0 12 1
....................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................... 25 2 1 105.00 105 84 0 21 0 0
....................................................................................................TATCACAGACATTTTGATGAGTT....................................................... 23 1 1 102.00 102 65 37 0 0 0
....................................................................................................TATCACAGCCATTTTGATGATTT....................................................... 23 1 1 96.00 96 70 25 1 0 0
....................................................................................................TATCACAGCCATTTTGATTAGTT....................................................... 23 1 1 95.00 95 71 21 2 1 0
....................................................................................................TATCACGGCCATTTTGATGAGT........................................................ 22 1 1 87.00 87 5 68 2 10 2
....................................................................................................TATCACAGCAATTTTGATGAGTT....................................................... 23 1 1 86.00 86 44 42 0 0 0
......................................................................................................TCACAGCCATTTTGATGAGTT....................................................... 21 0 1 83.00 83 46 27 10 0 0
....................................................................................................TATAACAGCCATTTTGATGAGTT....................................................... 23 1 1 80.00 80 50 30 0 0 0
....................................................................................................TATCACAGCCAGCTTGATGAG......................................................... 21 2 1 80.00 80 25 49 6 0 0
....................................................................................................CATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 75.00 75 36 38 0 1 0
......................................................................................................TCACAGCCAGCTTGATGAG......................................................... 19 2 2 68.50 137 6 128 1 2 0
....................................................................................................TACCACAGCCATTTTGATGAGTT....................................................... 23 1 1 65.00 65 42 23 0 0 0
....................................................................................................TATCACACCCATTTTGATGAGTT....................................................... 23 1 1 64.00 64 39 23 2 0 0
....................................................................................................TATCACAGCCATTTTGATGA.......................................................... 20 0 1 63.00 63 2 47 6 8 0
....................................................................................................TATCAAAGCCATTTTGATGAGTT....................................................... 23 1 1 63.00 63 21 42 0 0 0
...................................................................................................CTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 63.00 63 40 20 3 0 0
....................................................................................................TATCGCAGCCATTTTGATGAGTT....................................................... 23 1 1 62.00 62 41 20 1 0 0
....................................................................................................TATCACAGCCACTTTGATGAGTT....................................................... 23 1 1 60.00 60 36 24 0 0 0
....................................................................................................TATCACAGCCATTTTGATTAGT........................................................ 22 1 1 58.00 58 12 42 0 3 1
....................................................................................................TATCACAGCCATTTTGAAGAGTT....................................................... 23 1 3 57.67 173 71 99 3 0 0
..........................................................TCTTCAAGGGGGTTGTGAAATG.................................................................................................. 22 0 1 55.00 55 43 9 1 0 2
....................................................................................................TATCACAGCCGTTTTGATGAGTT....................................................... 23 1 1 51.00 51 26 21 3 1 0
....................................................................................................TATCACAGCCATTTTGATGGGTT....................................................... 23 1 1 51.00 51 37 13 0 1 0
....................................................................................................TATCACAGCCATTTTGATAAGTT....................................................... 23 1 1 49.00 49 28 21 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGTC....................................................... 23 1 1 47.00 47 32 15 0 0 0
........................................................................................................ACAGCCATTTTGATGAGT........................................................ 18 0 1 44.00 44 12 28 0 4 0
....................................................................................................TATCACAGCCATTTTGCTGAGTT....................................................... 23 1 1 42.00 42 25 17 0 0 0
....................................................................................................TATCACAGCCATCTTGATGAGTT....................................................... 23 1 1 42.00 42 26 14 2 0 0
....................................................................................................TATCACAGCCATTTTGGTGAGTT....................................................... 23 1 1 41.00 41 34 6 1 0 0
....................................................................................................TATCACAACCATTTTGATGAGTT....................................................... 23 1 1 41.00 41 21 20 0 0 0
.....................................................................................................ATCACAGCCATTTTGATGAGT........................................................ 21 0 1 41.00 41 3 7 26 5 0
....................................................................................................TATCACAGCCAGCTTGATGAGCTT...................................................... 24 3 1 41.00 41 20 18 0 0 3
....................................................................................................TATCATAGCCATTTTGATGAGTT....................................................... 23 1 1 40.00 40 29 11 0 0 0
....................................................................................................TATCACAGCCATTTTGAGGAGT........................................................ 22 1 3 39.00 117 44 70 1 0 2
....................................................................................................TATCACAGCCATTCTGATGAGTT....................................................... 23 1 1 39.00 39 27 12 0 0 0
....................................................................................................AATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 38.00 38 10 26 2 0 0
....................................................................................................TATCACAGCCATTTTGATGAATT....................................................... 23 1 1 38.00 38 16 22 0 0 0
....................................................................................................TATCACAGCCATTTCGATGAGTT....................................................... 23 1 1 38.00 38 24 14 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGC........................................................ 22 1 1 38.00 38 4 29 0 5 0
....................................................................................................TATCACAGCCATTTTTATGAGTT....................................................... 23 1 1 37.00 37 34 3 0 0 0
....................................................................................................TATCACAGCCATTTTGAAGAG......................................................... 21 1 3 37.00 111 8 103 0 0 0
....................................................................................................TATCACAGCCATTTTGATCAGTT....................................................... 23 1 1 35.00 35 20 14 0 1 0
....................................................................................................TATCACAGCCGTTTTGATGAGT........................................................ 22 1 1 34.00 34 2 31 0 1 0
....................................................................................................TATTACAGCCATTTTGATGAGTT....................................................... 23 1 1 34.00 34 24 10 0 0 0
....................................................................................................TATCACATCCATTTTGATGAGT........................................................ 22 1 1 32.00 32 27 4 0 1 0
....................................................................................................TATCCCAGCCATTTTGATGAGTT....................................................... 23 1 1 31.00 31 18 10 2 0 1
....................................................................................................TATCACAGCTATTTTGATGAGTT....................................................... 23 1 1 31.00 31 29 2 0 0 0
....................................................................................................TATCACAGACATTTTGATGAGT........................................................ 22 1 1 31.00 31 6 25 0 0 0
....................................................................................................TATCACAGCCCTTTTGATGAGTT....................................................... 23 1 1 30.00 30 16 14 0 0 0
....................................................................................................TATCACAGCCATTTTGATGACTT....................................................... 23 1 1 30.00 30 18 12 0 0 0
....................................................................................................TATCACAGCAATTTTGATGAGT........................................................ 22 1 1 30.00 30 5 24 1 0 0
....................................................................................................TATAACAGCCATTTTGATGAGT........................................................ 22 1 1 29.00 29 7 22 0 0 0
....................................................................................................TCTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 29.00 29 18 11 0 0 0
................................................................................TTGCCATTTTATTCAACTCA.............................................................................. 20 0 1 29.00 29 16 3 2 8 0
....................................................................................................TATCACAGCCAGCTTGATGA.......................................................... 20 2 1 27.00 27 4 18 3 1 1
....................................................................................................TATCACAGCCATTTTGATGCGTT....................................................... 23 1 1 27.00 27 17 10 0 0 0
.......................................................................................................CACAGCCATTTTGATGAGTT....................................................... 20 0 1 26.00 26 7 16 3 0 0
....................................................................................................TATCACAGCCAGCTTGATG........................................................... 19 2 1 26.00 26 1 23 1 1 0
....................................................................................................TATCACAGCCATTTTAATGAGTT....................................................... 23 1 1 26.00 26 11 15 0 0 0
....................................................................................................TATCACAGCCATTTTCATGAGTT....................................................... 23 1 1 26.00 26 17 9 0 0 0
....................................................................................................TGTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 25.00 25 17 8 0 0 0
......................................................................................................TATCAGCCATTTTGATGAGTT....................................................... 21 2 1 25.00 25 13 10 1 1 0
....................................................................................................TATCACAGCCATTTTGATGAGG........................................................ 22 1 1 25.00 25 2 5 0 18 0
....................................................................................................CATCACAGCCATTTTGATGAGT........................................................ 22 1 1 21.00 21 2 19 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAAT................................................................................................... 22 0 1 21.00 21 21 0 0 0 0
....................................................................................................TATCACAGCCATTTTGATCAGT........................................................ 22 1 1 21.00 21 5 15 0 1 0
....................................................................................................TATCACAGCCATTTTGATGAGTA....................................................... 23 1 1 21.00 21 8 11 2 0 0
....................................................................................................TATCACAACCATTTTGATGAGT........................................................ 22 1 1 20.00 20 2 18 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGA........................................................ 22 1 1 20.00 20 3 16 1 0 0
....................................................................................................TATCACAGCCATTTTGATAAGT........................................................ 22 1 1 20.00 20 3 17 0 0 0
.......................................................................................................CACAGCCATTTTGATGAGT........................................................ 19 0 1 20.00 20 0 19 1 0 0
....................................................................................................GATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 19.00 19 3 14 2 0 0
....................................................................................................TATCACAGTCATTTTGATGAGTT....................................................... 23 1 1 19.00 19 11 8 0 0 0
....................................................................................................TATCACGGCCATTTTGATGAG......................................................... 21 1 1 19.00 19 0 15 0 3 1
....................................................................................................TATCACACCCATTTTGATGAGT........................................................ 22 1 1 19.00 19 6 13 0 0 0
.....................................................................................................ATCACAGCCAGCTTGATGAGCT....................................................... 22 3 1 18.00 18 11 5 2 0 0
....................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................... 26 3 2 17.00 34 29 0 5 0 0
....................................................................................................TATCAAAGCCATTTTGATGAGT........................................................ 22 1 1 17.00 17 1 16 0 0 0
....................................................................................................TATCACAGCCATCTTGATGAGT........................................................ 22 1 1 17.00 17 7 10 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGCTA...................................................... 24 2 1 16.00 16 14 2 0 0 0
......................................................................................................TCACAGCCATTTTGATGAGT........................................................ 20 0 1 16.00 16 1 15 0 0 0
....................................................................................................TATCACAGCCATTTCGATGAGT........................................................ 22 1 1 16.00 16 7 9 0 0 0
......................................................................................................TCACAGCCAGCTTGATGAGCTT...................................................... 22 3 2 15.00 30 7 22 0 0 1
....................................................................................................TACCACAGCCATTTTGATGAGT........................................................ 22 1 1 15.00 15 3 12 0 0 0
....................................................................................................TATCGCAGCCATTTTGATGAGT........................................................ 22 1 1 15.00 15 6 9 0 0 0
....................................................................................................TATCACAGCCCTTTTGATGAGT........................................................ 22 1 1 15.00 15 5 10 0 0 0
....................................................................................................TATCACAGCCATTTTGATGGGT........................................................ 22 1 1 15.00 15 4 11 0 0 0
....................................................................................................TATCACAGCCATTTTTATGAGT........................................................ 22 1 1 14.00 14 5 9 0 0 0
.........................................................................................................CAGCCATTTTGATGAGTT....................................................... 18 0 1 14.00 14 3 7 4 0 0
....................................................................................................TATCACAGCCATTTTGATGAGAT....................................................... 23 1 1 14.00 14 3 11 0 0 0
....................................................................................................TATCACCGCCATTTTGATGAGTT....................................................... 23 1 1 14.00 14 13 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAC......................................................... 21 1 1 13.00 13 0 1 0 12 0
....................................................................................................TATCATAGCCATTTTGATGAGT........................................................ 22 1 1 13.00 13 3 10 0 0 0
....................................................................................................TAACACAGCCATTTTGATGAGTT....................................................... 23 1 1 13.00 13 9 4 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAA.................................................................................................... 21 0 1 12.00 12 12 0 0 0 0
....................................................................................................TATCTCAGCCATTTTGATGAGTT....................................................... 23 1 1 12.00 12 8 4 0 0 0
.........................................................CTCTTCAATGGGGTTGTGAAATG.................................................................................................. 23 1 1 12.00 12 11 1 0 0 0
....................................................................................................TATCACTGCCATTTTGATGAGTT....................................................... 23 1 1 12.00 12 8 4 0 0 0
.........................................................CTCTTCAAGTGGGTTGTGAAATG.................................................................................................. 23 1 1 12.00 12 11 1 0 0 0
....................................................................................................TATCACAGCCATTTTGAAGT.......................................................... 20 2 3 11.67 35 7 28 0 0 0
....................................................................................................TATCACAGCCAGCTTGAGGA.......................................................... 20 3 5 11.60 58 17 33 6 1 1
....................................................................................................TATCACAGCCGTTTTGATGAG......................................................... 21 1 1 11.00 11 0 11 0 0 0
....................................................................................................TATCACAGCCACTTTGATGAGCT....................................................... 23 2 1 11.00 11 10 1 0 0 0
..........................................................TCTTCAAGGGGGTTGTGAAA.................................................................................................... 20 0 1 11.00 11 5 3 2 0 1
....................................................................................................TATCACAGCCATTTTGATGTGTT....................................................... 23 1 1 11.00 11 8 3 0 0 0
....................................................................................................TATCACAGCCATTTTGGTGAGT........................................................ 22 1 1 11.00 11 1 10 0 0 0
....................................................................................................TATCAGAGCCATTTTGATGAGTT....................................................... 23 1 1 11.00 11 4 7 0 0 0
....................................................................................................TATCACAGCCATTTTGAGGAGTT....................................................... 23 1 3 10.67 32 24 7 0 0 1
....................................................................................................TATTACAGCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 4 6 0 0 0
.........................................................CTCTTCAAGGGGGCTGTGAAATG.................................................................................................. 23 1 1 10.00 10 6 4 0 0 0
....................................................................................................TATCACAGCCATTTTGCTGAGT........................................................ 22 1 1 10.00 10 2 8 0 0 0
....................................................................................................TATCACAGCCATTTTAATGAGT........................................................ 22 1 1 10.00 10 3 7 0 0 0
.........................................................CTCCTCAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 10.00 10 6 4 0 0 0
....................................................................................................TATCACAGCCATTTTGATGCGT........................................................ 22 1 1 10.00 10 2 8 0 0 0
....................................................................................................TATCACAGCCAATTTGATGAGTT....................................................... 23 1 1 10.00 10 2 6 2 0 0
......................................................................................................TCACAGCCATTTTGATGAGTTT...................................................... 22 0 1 10.00 10 8 2 0 0 0
....................................................................................................GATCACAGCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 1 9 0 0 0
....................................................................................................TATGACAGCCATTTTGATGAGTT....................................................... 23 1 1 10.00 10 7 3 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................... 24 1 1 10.00 10 4 2 3 1 0
....................................................................................................TATCACAGTCATTTTGATGAGT........................................................ 22 1 1 10.00 10 4 4 0 2 0
....................................................................................................TATCACAGCCATTTTGTTGAGTT....................................................... 23 1 1 10.00 10 4 6 0 0 0
....................................................................................................TATCACAGCCAGTTTGATGAGTT....................................................... 23 1 1 10.00 10 5 0 5 0 0
....................................................................................................TATCACAGCCATTTTGATGAAT........................................................ 22 1 1 9.00 9 0 9 0 0 0
..........................................................TCTTCAAGGGGGTTGTGA...................................................................................................... 18 0 1 9.00 9 4 5 0 0 0
....................................................................................................TATCACAGCCAATTTGATGAGT........................................................ 22 1 1 9.00 9 1 4 3 0 1
.........................................................CTATTCAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 9.00 9 5 4 0 0 0
....................................................................................................TATCACAGCCACTTTGAGGAG......................................................... 21 2 3 8.67 26 14 9 1 1 1
....................................................................................................TATCACAGCCATTTTGACGAGTTAC..................................................... 25 2 3 8.33 25 24 1 0 0 0
..........................................................TCTTCAAGGGGGTTGTGAAAT................................................................................................... 21 0 1 8.00 8 5 3 0 0 0
....................................................................................................AATCACAGCCATTTTGATGAGT........................................................ 22 1 1 8.00 8 0 8 0 0 0
......................................................................................................TCACAGCCACTTTGATGAGCTA...................................................... 22 3 1 8.00 8 6 1 0 0 1
....................................................................................................TTTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 8.00 8 6 2 0 0 0
...................................................................................................CTATCACAGCCATTTTGATGAGT........................................................ 23 1 1 8.00 8 5 3 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGGT....................................................... 23 1 1 8.00 8 8 0 0 0 0
.........................................................CTCTTAAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 8.00 8 3 5 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAGTG.................................................................................................. 23 1 1 8.00 8 8 0 0 0 0
....................................................................................................TGTCACAGCCATTTTGATGAGT........................................................ 22 1 1 8.00 8 1 7 0 0 0
................................................................................TTGCCATTTTATTCAACTC............................................................................... 19 0 1 8.00 8 1 1 0 6 0
....................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................... 24 1 2 7.50 15 10 5 0 0 0
.........................................................CTCTCCAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 7.00 7 7 0 0 0 0
.........................................................CCCTTCAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 7.00 7 6 1 0 0 0
.........................................................CTCTTCAAGGGGGTTGTG....................................................................................................... 18 0 1 7.00 7 2 4 0 1 0
....................................................................................................TATCACAGCCACTTTGATGAGT........................................................ 22 1 1 7.00 7 2 5 0 0 0
....................................................................................................TATCCCAGCCATTTTGATGAGT........................................................ 22 1 1 7.00 7 1 6 0 0 0
......................................................................................................TATCAGCCATTTTGATGAGT........................................................ 20 2 1 7.00 7 1 6 0 0 0
....................................................................................................TATCACAGCCATTTTGATGACT........................................................ 22 1 1 7.00 7 2 5 0 0 0
....................................................................................................TATCACAGCCATTCTGATGAGT........................................................ 22 1 1 7.00 7 5 2 0 0 0
.........................................................ATCTTCAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 7.00 7 7 0 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAA..................................................................................................... 20 0 1 6.00 6 6 0 0 0 0
....................................................................................................TATCACAGCCATTTTCATGAGT........................................................ 22 1 1 6.00 6 3 3 0 0 0
....................................................................................................TATCACAGCCATTTTGATTAG......................................................... 21 1 1 6.00 6 0 1 0 5 0
....................................................................................................TCTCACAGCCATTTTGATGAGT........................................................ 22 1 1 6.00 6 1 5 0 0 0
.....................................................................................................TACACAGCCATTTTGATGAGTT....................................................... 22 2 1 6.00 6 2 4 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGA...................................................................................................... 19 0 1 6.00 6 4 2 0 0 0
.........................................................CTCTTCAAGGGGGTCGTGAAATG.................................................................................................. 23 1 1 6.00 6 6 0 0 0 0
....................................................................................................TATCACAGCCATATTGATGAGTT....................................................... 23 1 1 6.00 6 4 1 0 1 0
.........................................................CTCTTCAAGGGGGTTGCGAAATG.................................................................................................. 23 1 1 6.00 6 5 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATAAG......................................................... 21 1 1 6.00 6 0 6 0 0 0
......................................................................................................TCACAGCCACTTTGATGAGCT....................................................... 21 2 1 6.00 6 4 1 1 0 0
.........................................................CTCTTCAAGGGGGTTATGAAATG.................................................................................................. 23 1 1 6.00 6 4 2 0 0 0
....................................................................................................TATCACAGCCGCTTTGATGAGCT....................................................... 23 3 1 6.00 6 2 4 0 0 0
.........................................................CTCTTCAAGGTGGTTGTGAAATG.................................................................................................. 23 1 1 6.00 6 6 0 0 0 0
....................................................................................................TATCACAGCCATTTTGATAGT......................................................... 21 3 8 5.88 47 16 30 0 0 1
....................................................................................................TATCACAGCCAGCTTTATGAG......................................................... 21 3 3 5.67 17 4 5 5 3 0
....................................................................................................TATCACAGCCAGTTTGAGGAG......................................................... 21 2 3 5.33 16 3 12 1 0 0
....................................................................................................TATCACAGCTATTTTGATGAGT........................................................ 22 1 1 5.00 5 3 2 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAATT.................................................................................................. 23 1 1 5.00 5 5 0 0 0 0
....................................................................................................TATCACAGCCATTTTGATGT.......................................................... 20 1 1 5.00 5 0 5 0 0 0
....................................................................................................TATCACAGCCTTTTTGATGAGTT....................................................... 23 1 1 5.00 5 5 0 0 0 0
....................................................................................................TAACACAGCCATTTTGATGAGT........................................................ 22 1 1 5.00 5 2 3 0 0 0
....................................................................................................TATCACAGCCATTATGATGAGTT....................................................... 23 1 1 5.00 5 1 4 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGTAA...................................................... 24 2 1 5.00 5 5 0 0 0 0
.........................................................CTCTTCAAGGGGGTTGTAAAATG.................................................................................................. 23 1 1 5.00 5 4 1 0 0 0
.........................................................CTCTTCACGGGGGTTGTGAAATG.................................................................................................. 23 1 1 5.00 5 4 1 0 0 0
.....................................................................................................TTCACAGCCATTTTGATGAGTT....................................................... 22 1 1 5.00 5 1 4 0 0 0
....................................................................................................TATCACAGCCATTTTGAGGAG......................................................... 21 1 3 4.67 14 0 12 2 0 0
......................................................................................................TCACAGCCGCTTTGATGAGCT....................................................... 21 3 5 4.20 21 0 19 1 0 1
....................................................................................................TATCACAGGCATTTTGATGAGTT....................................................... 23 1 1 4.00 4 4 0 0 0 0
....................................................................................................TATCACAGACATTTTGATGAG......................................................... 21 1 1 4.00 4 1 3 0 0 0
.........................................................CTCTTCGAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 4.00 4 2 2 0 0 0
....................................................................................................TATCACAGCCATTTTGATGG.......................................................... 20 1 1 4.00 4 0 0 0 4 0
....................................................................................................TATCACAGCCATTTAGATGAGTT....................................................... 23 1 1 4.00 4 1 3 0 0 0
....................................................................................................TATCACCGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 4 0 0 0 0
....................................................................................................TATGACAGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 1 3 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAATA.................................................................................................. 23 1 1 4.00 4 2 2 0 0 0
....................................................................................................TATCGCAGCCATTTTGATGAG......................................................... 21 1 1 4.00 4 0 4 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAGATG.................................................................................................. 23 1 1 4.00 4 4 0 0 0 0
....................................................................................................TATCACAGCCATATTGATGAGT........................................................ 22 1 1 4.00 4 0 1 0 3 0
.........................................................CTCTTCAAGGGGGTTGTTAAATG.................................................................................................. 23 1 1 4.00 4 4 0 0 0 0
....................................................................................................TATCACAGCCATTTTGTTGAGT........................................................ 22 1 1 4.00 4 0 4 0 0 0
.........................................................CTCTTCAAGGGTGTTGTGAAATG.................................................................................................. 23 1 1 4.00 4 3 1 0 0 0
......................................................................................................TCACAGCCAGTTTGATGAGCT....................................................... 21 2 1 4.00 4 1 2 0 0 1
.........................................................CTCTTCAAGGGGATTGTGAAATG.................................................................................................. 23 1 1 4.00 4 1 3 0 0 0
....................................................................................................TATCACAGCCATTTTGATCAG......................................................... 21 1 1 4.00 4 0 4 0 0 0
.........................................................CTCTTCAAGGCGGTTGTGAAATG.................................................................................................. 23 1 1 4.00 4 4 0 0 0 0
..........................................................TCTTCAAGGTGGTTGTGAAATG.................................................................................................. 22 1 2 3.50 7 1 2 2 2 0
....................................................................................................TATCACAGCCATTTTGAAGA.......................................................... 20 1 3 3.33 10 0 10 0 0 0
....................................................................................................CATCACAGCCATTTTGAAGAGT........................................................ 22 2 3 3.33 10 1 9 0 0 0
.....................................................................................................ATCACAGCCATTTTGATGAGTTA...................................................... 23 1 1 3.00 3 0 0 3 0 0
.........................................................CTCTTCAAGAGGGTTGTGAAATG.................................................................................................. 23 1 1 3.00 3 3 0 0 0 0
.........................................................CTCTTCAAGGGGGTTCTGAAATG.................................................................................................. 23 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCAGCTTGATGAGT........................................................ 22 2 1 3.00 3 2 1 0 0 0
....................................................................................................TATCGCATCCATTTTGATGAGTT....................................................... 23 2 1 3.00 3 3 0 0 0 0
....................................................................................................TAGCACAGCCATTTTGATGAGTT....................................................... 23 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCAGCTTGATGAGAT....................................................... 23 3 1 3.00 3 1 2 0 0 0
....................................................................................................TATCACAGCCATGTTGATGAGTT....................................................... 23 1 1 3.00 3 2 0 0 1 0
....................................................................................................TATCACAGCCATTTTGATGAGTTAT..................................................... 25 2 1 3.00 3 3 0 0 0 0
......................................................................................................TCACAGCCATCTTGATGAGCTA...................................................... 22 3 1 3.00 3 3 0 0 0 0
......................................................................................................TCACAGCCACTTTGATGAG......................................................... 19 1 1 3.00 3 0 3 0 0 0
....................................................................................................TATCACAGCCATGTTGATGAGT........................................................ 22 1 1 3.00 3 0 0 0 3 0
....................................................................................................TATCACAGCCATTTTGACGAGTTTC..................................................... 25 1 2 3.00 6 0 2 3 0 1
.........................................................CTCTTCAGGGGGGTTGTGAAATG.................................................................................................. 23 1 1 3.00 3 1 2 0 0 0
.....................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................... 23 0 1 3.00 3 0 0 3 0 0
....................................................................................................TATCTCAGCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 0 3 0 0 0
.........................................................CTCTTCAAGGGGCTTGTGAAATG.................................................................................................. 23 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGCTT...................................................... 24 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCACTTTGATGAG......................................................... 21 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAATTT...................................................... 24 1 1 3.00 3 0 3 0 0 0
....................................................................................................TATCACAACCATTTTGATGAG......................................................... 21 1 1 3.00 3 0 3 0 0 0
....................................................................................................TATCACAGCCATTTTGATGATT........................................................ 22 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCATTTTTATGAG......................................................... 21 1 1 3.00 3 1 1 0 1 0
.........................................................CTCTTCAAGGGGGTTGTGAAATC.................................................................................................. 23 1 1 3.00 3 1 2 0 0 0
......................................................................................................TCACAGCCAGATTGATGAGCT....................................................... 21 3 1 3.00 3 1 2 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGGAATG.................................................................................................. 23 1 1 3.00 3 2 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATGTT......................................................... 21 2 1 3.00 3 0 2 1 0 0
......................................................................................................TCACAGCCATTTTGATGAGTTA...................................................... 22 1 1 3.00 3 1 2 0 0 0
.........................................................CTCTTCAAGGGCGTTGTGAAATG.................................................................................................. 23 1 1 3.00 3 1 2 0 0 0
...................................................................................................TTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 3.00 3 0 0 3 0 0
...................................................................................................GTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 3.00 3 0 0 3 0 0
....................................................................................................TATCACAGCCACTTTGAGGAGC........................................................ 22 3 3 3.00 9 4 5 0 0 0
.........................................................CTCTTCAAAGGGGTTGTGAAATG.................................................................................................. 23 1 1 3.00 3 3 0 0 0 0
.........................................................GTCTTCAAGGGGGTTGTGAAATG.................................................................................................. 23 1 1 3.00 3 1 2 0 0 0
....................................................................................................TATCACAGCCAGTTTGATGAGT........................................................ 22 1 1 3.00 3 0 1 2 0 0
....................................................................................................TATCACAGCCGCTTTGAGGAG......................................................... 21 3 5 2.60 13 0 13 0 0 0
....................................................................................................TATAACAGCCATTTTGAAGAGT........................................................ 22 2 3 2.33 7 1 6 0 0 0
....................................................................................................TATCACAGCCATTTTGAATAGT........................................................ 22 2 3 2.33 7 0 7 0 0 0
....................................................................................................TATCACAGCCATTTTGAAGAGC........................................................ 22 2 3 2.33 7 2 5 0 0 0
....................................................................................................TATCACAGCAGCTTTGATGAG......................................................... 21 3 6 2.17 13 1 9 1 2 0
....................................................................................................TATCACAGCCCCTTTGATGAGCT....................................................... 23 3 1 2.00 2 2 0 0 0 0
.....................................................................................................TTCACAGCCATTTTGATGAGT........................................................ 21 1 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACGGCCGTTTTGATGAGTT....................................................... 23 2 1 2.00 2 1 0 0 0 1
....................................................................................................CATCACATCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAA......................................................... 21 1 1 2.00 2 0 2 0 0 0
.....................................................................................................ATCACAGCCATTTTGATGAG......................................................... 20 0 1 2.00 2 0 1 1 0 0
.........................................................CTCTTCAAGGGGGTTGTGAATG................................................................................................... 22 2 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCTATTTTGATGAG......................................................... 21 1 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAT......................................................... 21 1 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACGGACATTTTGATGAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0
...................................................................................................CTATCACGGCCATTTTGATGAGTT....................................................... 24 2 1 2.00 2 0 0 2 0 0
.....................................................................................................TACACAGCCATTTTGATGAGT........................................................ 21 2 1 2.00 2 0 2 0 0 0
....................................................................................................TATAACAGCCATTTTGATGAG......................................................... 21 1 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACAGACATTTTGAAGAGT........................................................ 22 2 3 2.00 6 2 4 0 0 0
........................................................................................................ACGGCCATTTTGATGAGTT....................................................... 19 1 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACAGCCGTTTTGATGGGTT....................................................... 23 2 1 2.00 2 0 0 0 2 0
.........................................................CTCTTCAACGGGGTTGTGAAATG.................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCAGTTTGATGAGCT....................................................... 23 2 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCATTTTTTTGAGTT....................................................... 23 2 1 2.00 2 1 1 0 0 0
...................................................................................................CTATCACAGCCATTTTGATGAG......................................................... 22 1 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATGAGTAAA..................................................... 25 3 1 2.00 2 2 0 0 0 0
.........................................................CTCTTCAAGGGGTTTGTGAAATG.................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
....................................................................................................TATCACAGCCATCTTGATGAG......................................................... 21 1 1 2.00 2 0 1 0 1 0
....................................................................................................TATCACAGCCGTTTTGATG........................................................... 19 1 1 2.00 2 0 0 0 2 0
....................................................................................................TATCACAGCCATTTTGATTAGTTT...................................................... 24 1 1 2.00 2 0 2 0 0 0
...................................................................................................CTATCACATCCATTTTGATGAGTT....................................................... 24 2 1 2.00 2 2 0 0 0 0
....................................................................................................TATCACAGCCACCTTGATGAGCT....................................................... 23 3 1 2.00 2 1 1 0 0 0
......................................................................................................TCACAGCCAGTTTGATGAG......................................................... 19 1 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACAGCCAACTTGATGAGCT....................................................... 23 3 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCTTTTTGATGAGT........................................................ 22 1 1 2.00 2 1 1 0 0 0
.....................................................................................................ATCACAGCCAGCTTGATGAG......................................................... 20 2 1 2.00 2 0 1 1 0 0
......................................................................................................TCACAGCCATTTTGATGAG......................................................... 19 0 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACATCCATTTTGATGAGCT....................................................... 23 2 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCATGTTGATGAG......................................................... 21 1 1 2.00 2 0 0 0 2 0
.....................................................................................................ATCACAGCCATTTTGATGA.......................................................... 19 0 1 2.00 2 0 0 2 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAACG.................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
.........................................................CTCTTCAAGGGAGTTGTGAAATG.................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCATTTTGAT............................................................ 18 0 1 2.00 2 0 2 0 0 0
....................................................................................................TATCACAGCCATTTTGATGTGT........................................................ 22 1 1 2.00 2 0 2 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGAAATGT................................................................................................. 24 0 1 2.00 2 2 0 0 0 0
......................................................................................................TAACAGCCATTTTGATGAGTT....................................................... 21 1 1 2.00 2 0 2 0 0 0
....................................................................................................AATCACAGCCATTTTGATGAG......................................................... 21 1 1 2.00 2 0 2 0 0 0
....................................................................................................TACCACAGCCATTTTGATGAG......................................................... 21 1 1 2.00 2 0 2 0 0 0
.........................................................CTCTTCAAGGGGGTTGTGCAATG.................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
....................................................................................................TATCACAGCCACTTTGATGA.......................................................... 20 1 1 2.00 2 1 1 0 0 0
....................................................................................................TATCACAGCCATTTTGATTAGTTAA..................................................... 25 3 1 2.00 2 0 1 1 0 0

Anti-sense strand reads

TCGGTTGTTCACAAAAAAACCTTAGGCAAGGCCGTTTTCTACCTTAAAGAATGCATTGAGAAGTTCCCCCAACACTTTACAACGGTAAAATAAGTTGAGTATAGTGTCGGTAAAACTACTCAAAGCACGCTCATAAGGACGTTGTCATAAGCTTTACCTACCATAGGAATCTTATACA

****************************************(((((((.((((.(((((.((((((.((((((((.(((..................))).)))))))).)))))).))))).)))).))).)))).****************************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V119

head

 M020

head

 V117

male body
........................................................CGAGTAGTTCCTCCAACACT...................................................................................................... 20 3 6 1.17 7 0 7 0 0
...............................................................................................TGAGTATAGTGTCGGTAGAACTA............................................................ 23 1 1 1.00 1 0 0 1 0
......................................................................................................................CGCAAAGCACGGTCATACGGA....................................... 21 3 1 1.00 1 0 0 0 1
..................................................................................................................................TCATAAGGACGTTGTCATAA............................ 20 0 1 1.00 1 1 0 0 0
............................................TAAAGAATGCATTGAGAAGTTCCCCC............................................................................................................ 26 0 1 1.00 1 1 0 0 0
........................................................CGAGGAGTTCCTCCAACACT...................................................................................................... 20 3 6 0.33 2 0 2 0 0
............................................................................TGGCAACGGAAAAATAAGTT.................................................................................. 20 3 20 0.05 1 1 0 0 0
...............................................................................................................................CGCACATAAGGCCGTTGA................................. 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:2143171-2143348 - dwi-mir-13a Known_mirbase AGCCAACAAGTGTTTTTTT--GGAATCCGTTCCGG-CAAAAGAT---GG------------------------AATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT-C----CTGCAACAGTATT-------------------CGAA---------------AT-------------------------------GG--------------ATGGTATCCTTAGA-----------------------ATATGT
droVir3 scaffold_13047:13335633-13335773 + dvi-mir-13a Known_mirbase ----------------------------------------------------------------------------TTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-GCTTA----A-------------ATTCATT-----GCCCTCGTCGG-----CAGAATGGGCTGGCAAGGACG------------ATTAT-CGTTTTT---------------------------------------------------
droMoj3 scaffold_6540:10568292-10568498 + dmo-mir-13a Known_mirbase AACCAACAAGTGTTTGCATCT-----------CAT------TAT-ATGGGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TT-GCTTTCAGCAT------------------TGTC----CCAT---------------CC-------------------------------GT--------------TTTGTGTCACTGGATTATCCACCTCAATCTCCATCTTCAT-TT
droGri2 scaffold_14906:4357596-4357764 - dgr-mir-13a Known_mirbase ----------------------------------------------------------------------------TTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-GCTTT----CA----TCACAGTGA-TCATTGTC----CCTC-G--C-----CGGGGCCGGTTCG--------TGCAGT----------------------------------CGCCGCCTCCTCCTGTTCCTCCTCCTTCTCCTTTGT
dp5 2:9824878-9825067 + dps-mir-13a Known_mirbase GCCCAACAAGTGTTCGGCTCG-----------TAC------TTT-TTG-GACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-CA-----G----------CAATCCATC-----ATCGATCGGGG-----CAGGGCAGGATGG--------AGCACAG--------------------------A----------------------------------------GT
droPer2 scaffold_0:10660028-10660213 - dpe-mir-13a Known_mirbase --CCAACAAGTGTTCGGCTCG-----------TAC------TAT-TTG-GACAAA--AAAAAAACCGTCATCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-CA-----G----------CAATCCATC-----ATCGATCGGGG-----CAGGGCAGGATGG--------AGCACAG--------------------------A----------------------------------------GT
droAna3 scaffold_13340:12827580-12827755 - dan-mir-13a Known_mirbase CGCCAACAAGTGTGCTACA--AGAATCCCCTCAA-----------------------AAAAGGACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TC-GT-CA-----G----------AAAACCGTC-----A--GAAAGGGGCGCGG-----CG-------------------------------GC-------------------------AGG-----------------------ATGTCA
droBip1 scf7180000396691:1710476-1710644 - CGCCAACAAGTGTTCTCGA-----AGCCCCCCTAACCCGAAGAT------------------------CCATCCAGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-C----CAAAA-------------AATCGCA---TCGT-----GGGGCGCGGCAG------------------------------------GCGATTTCGT------------------------------------------------
droKik1 scf7180000302639:1443183-1443332 + AGCCAACAAGTGTTTGTGATC-----------CAA------GAT--------------------------GTCTGATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT-T----CGGCAGCCAGAAG-----------------------------------------------------GAGTACCGCTTCGC--------------AAATC--------------------------------------------
droFic1 scf7180000452523:592225-592383 - AACCAACAAGTGTTCGTGATC-----------CCA------TAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCA------------------------------------------------------------------AATAT-CAATTTCCATAACCGATTGTAT----------------------------------CC
droEle1 scf7180000491080:1007092-1007243 - AACCAACAAGTGTTCGTGATC-----------CGA------CAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CAGCAACTGGATA-----------------------------------------------------GA---------CATAAAT-CAGTTTTTATAAGC--------------------------------------------
droRho1 scf7180000779250:92638-92792 + AGCCAACAAGTGTTCGTGATA-----------TAT-------ATGTCG-GAT--------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCT------------------------------------------------------------------AAAAT-CAAGTTTCATAAGC--------------------------------------------
droBia1 scf7180000302136:835516-835666 - AACCAACAAGTGTTCGTGATC-----------CAA------CAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCCGGTCA------------------------------------------------------------------AAAAT-CGCATTTCGCAACCG------------------------------------------T
droTak1 scf7180000415769:1925953-1926107 + AACCAACAAGTGTTCGTGATC-----------CAA------CAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCACT----------------------------------------------------------------AAAAT-CATATTTCGTGACCGT----------------------------------------TC
droEug1 scf7180000409281:109514-109664 + AGCCAACAAGTGTTCGTGATC-----------CGA------TAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT-T----CGGCATCTGGTCAAA----------------------------------------------------------------GTTAT-TATATTTCATAACC--------------------------------------------
dm3 chr3R:11243221-11243373 - dme-mir-13a Known_mirbase AACCAACAAGTGTTTGTGATC-----------CAA------GCC----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-G----CGGCAGCGGATCA------------------------------------------------------------------AAAAA-CATATTTCATAACCGA----------------------------------------CT
droSim2 3r:9985586-9985734 + dsi-mir-13a Known_mirbase AACCAACAAGTGTTCGTGATC-----------CAA------GCC----------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAGCGGATCG------------------------------------------------------------------AAAAA-CATATTTCATAACC--------------------------------------------
droSec2 scaffold_0:10705033-10705181 + dse-mir-13a Known_mirbase AGCCAACAAGTGTTCGTGATC-----------CAA------GCC----------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----GGTCAGCGGATCG------------------------------------------------------------------AAAAA-CATATTTCATAACC--------------------------------------------
droYak3 3R:15188557-15188709 + dya-mir-13a Known_mirbase AGCCAACAAGTGTTCGTGATC-----------CAA------GCC----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAACTTATTT----------------CAT-----GTATT-------------------------------------TCAAA-CATATTTCAT------------------------------------------------
droEre2 scaffold_4770:10769364-10769513 - der-mir-13a Known_mirbase AGCCAACAAGTGTTCGTGATC-----------CAA------GAC----------------------------ACAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----AAAAAGCGGGTTA-----------------------------------A------------------------------GAAAA-CATATTTCAAAAGC--------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGCCAACAAGTGTTTTTTT--GGAATCCGTTCCGG-CAAAAGAT---GG------------------------AATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT-C----CTGCAACAGTATT-------------------CGAA---------------AT-------------------------------GG--------------ATGGTATCCTTAGA-----------------------ATATGTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23154258.005425824712822583985612615
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................22110521.00105211793935036416258
.......................................................................................CTCTTCAAGGGGGTTGTGAAATG..............................................................................................................................................................................................................2314092.00409224153299772
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................2111119.001119234402115728
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................241289.00289010721458
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................221157.00157211102816
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................241143.0014303001067
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................191109.001095320153
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191108.0010812016629
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................251105.001050210840
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21183.008301004627
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20163.0063860247
........................................................................................TCTTCAAGGGGGTTGTGAAATG..............................................................................................................................................................................................................22155.0055012439
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................23147.00470003215
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18144.00444001228
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21141.0041526037
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................22138.0038500429
..............................................................................................................TTGCC-ATTTTATTCAACTCA.........................................................................................................................................................................................20129.0029820163
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20126.0026030716
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................22125.0025180025
.......................................................................................CTCTTCAAGGGGGTTGTGAAAT...............................................................................................................................................................................................................22121.0021000210
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23121.0021020811
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22120.0020010316
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................19120.0020010019
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................................................................................26217.0034050290
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................20116.0016000115
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................18114.001404037
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................21113.0013120001
.......................................................................................CTCTTCAAGGGGGTTGTGAAA................................................................................................................................................................................................................21112.0012000120
........................................................................................TCTTCAAGGGGGTTGTGAAA................................................................................................................................................................................................................20111.001102153
.....................................................................................................................................TCACAGCCATTTTGATGAGTTT.................................................................................................................................................................22110.001000082
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................24110.001013042
........................................................................................TCTTCAAGGGGGTTGTGA..................................................................................................................................................................................................................1819.00900045
........................................................................................TCTTCAAGGGGGTTGTGAAAT...............................................................................................................................................................................................................2118.00800053
..............................................................................................................TTGCC-ATTTTATTCAACTC..........................................................................................................................................................................................1918.00860011
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................2427.5015000105
.......................................................................................CTCTTCAAGGGGGTTGTG...................................................................................................................................................................................................................1817.00710024
.......................................................................................CTCTTCAAGGGGGTTGTGAA.................................................................................................................................................................................................................2016.00600060
.......................................................................................CTCTTCAAGGGGGTTGTGA..................................................................................................................................................................................................................1916.00600042
...................................................................................................................................TATCACAGCCATTTTGATAGT....................................................................................................................................................................2185.88470011630
.......................................................................................CTCTTCAAGGGGGTTGTGAAATT..............................................................................................................................................................................................................2315.00500050
...................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................................................................................2015.00500005
...................................................................................................................................TATCACAGCCATTTTGATGAGTAA.................................................................................................................................................................2415.00500050
...................................................................................................................................TATCACAGCCATTTTGATGG.....................................................................................................................................................................2014.00440000
.......................................................................................CTCTTCAAGGGGGTTGTGAAATA..............................................................................................................................................................................................................2314.00400022
....................................................................................................................................ATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................2313.00303000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAT................................................................................................................................................................2513.00300030
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2313.00303000
.......................................................................................CTCTTCAAGGGGGTTGTGAAATC..............................................................................................................................................................................................................2313.00300012
...................................................................................................................................TATCACAGCCATTTTGATGTT....................................................................................................................................................................2113.00301002
.....................................................................................................................................TCACAGCCATTTTGATGAGTTA.................................................................................................................................................................2213.00300012
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................2112.00200002
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................2012.00201001
.......................................................................................CTCTTCAAGGGGGTTGTGAATG...............................................................................................................................................................................................................2212.00200011
...................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................................................................................2112.00200011
...................................................................................................................................TATCACAGCCATTTTGATGAGTAAA................................................................................................................................................................2512.00200020
.....................................................................................................................................TCACAGCCATTTTGATGAG....................................................................................................................................................................1912.00200002
....................................................................................................................................ATCACAGCCATTTTGATGA.....................................................................................................................................................................1912.00202000
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................1812.00200002
.......................................................................................CTCTTCAAGGGGGTTGTGAAATGT.............................................................................................................................................................................................................2412.00200020
droVir3
----------------------------------------------------------------------------TTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-GCTTA----A-------------ATTCATT-----GCCCTCGTCGG-----CAGAATGGGCTGGCAAGGACG------------ATTAT-CGTTTTT---------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23130205.0030205224105143455520117283340003195610164461111108155841194012766533355737150522835311670727012612918275910106612111539294251454241758171185056443500101800310023121000
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................22119272.0019272039944814163913194181012419161040680151713636881121390155914321653539831109385121487211232316913000000011122222200211128265376012556206004260000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................2416046.00604600201362220790000000201310734121892151211928573371293235311102872200000200000022000041573300000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2413040.00304001511692392003001025713559160142986812819482153216367994221832108161080000000011231210001161371602201100000020000
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................2111964.00196426115718160261121000113624886664388983032312171709632908002001500000000120412200139195800211200000100000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................241840.0084000110361001000015731033458109567818113258180920414745390000000000000000000412503200000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................231347.00347005243000000000001011050110010162841902000004000000000000000000039300000000000000000
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191248.00248101217100200001411255619791000381121105030001400000000000000000002275000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................251216.002160010001000003000001150234344352412375432391068000000000000000000000204110000000000000
.......................................................................................CTCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................................................................................221204.002040023405010000024053213111000003060004210000000000000100000001046200000200000004310
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................221149.001490511030000000000031210103000002103000000000000000000000000000023000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTCA................................................................................................................................................................251139.00139000033100000000000001100102322519435090100511000000000000000000000201100000000000000
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................181124.001240000101101000034377421013000007224060030030000000000000000000139000000000000000000
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................221115.00115008421000000000011100001300001110000000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20196.00960427600000000005512330620000024010020000000000000000000000000111100000010000000000
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21196.009600787000000000011200002000000000500000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19183.00830351510000000000321202023000000201100000000000000000000000011011000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23179.00790002000000000013014360100020141361502010012000000000000000000002000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................24175.00750010000000000025153021200000101421202001103000000000000000000008000000000000000000
.......................................................................................................................................ACAGCCATTTTGATGAGTTC.................................................................................................................................................................20173.007300101800000000000000800100009368090000316000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTCT................................................................................................................................................................25161.0061000000000000000000002000010099524000000010000000000000000000000100000000000000000
.......................................................................................................................................ACAGCCATTTTGATGAGTTT.................................................................................................................................................................20142.00420000020000000023100327100000132104000008000000000000000000002000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTAA.................................................................................................................................................................24141.004100001000000000000010000100003451011134023000000000000000000001000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................................................................................25137.00370000000000000044022204200000381500000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22134.00340070000000000022011211200000024600000000000000000000000000003000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................................................................................26225.005000000000000030000000100211512126401311310000000000000000000000000100100000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTA................................................................................................................................................................25123.00230000020000000010000010000000330301001003000000000000000000000000500000000000000
........................................................................................TCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................................................................................21121.00210012000000000000010101000001111100000000000000000000000000042300000000000000001
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................20118.00180032000000000101021000300000320000000000000000000000000000000000000000000000000
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................20117.001700170000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21115.00150034000000000000000001000000210100000000000000000000000000011100000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTC................................................................................................................................................................25114.00140000000000000000000040000000121300000003000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................18114.00140200000000000011111011000000200200000000000000000000000000001000000000000000000
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20111.00110016100000000000010000000000000000000000000000000000000000011000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................23110.00100003000000000000000000010000000000000000000000000000000000013002000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................22110.00100300000000000010000000000000000000000000000000000000000000006000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTCC.................................................................................................................................................................24110.00100000011000000000000010000100001101000003000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAT................................................................................................................................................................25110.00100000000000000000000000000000420301000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTCA.................................................................................................................................................................24110.00100000000000000000000000000000151201000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTCC...............................................................................................................................................................2619.0090000011000000000000000000000030002000002000000000000000000000000000000000000000
.......................................................................................................................................ACAGCCATTTTGATGAGTTA.................................................................................................................................................................2018.0080000110000000000000000000000101000000004000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................2118.0080401000000000000000000000000000000000000000000000000000000003000000000000000000
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2318.0080043000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................1817.0070002000000000001100000010000010100000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATC......................................................................................................................................................................1917.0070000000000000000000000000000320200000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGA........................................................................................................................................................................1736.67200000000000000000000000000000000000000000000000000200000000000009600200000000001
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................2115.0050000000000000000101001000000100000000000000000000000000000001000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTTCC..............................................................................................................................................................2715.0050000000000000000000000000100010201000000000000000000000000000000000000000000000
.....................................................................................................................................TCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2215.0050001000000000012000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................1915.0050030000000000000101000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................................................................................2114.0040000000000000000010000010000000000000000000000000000000000002000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTTT...............................................................................................................................................................2614.0040000000001000000000000000000102000000000000000000000000000000000000000000000000
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2414.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ATCACAGCCATTTTGATGA.....................................................................................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTCTC...............................................................................................................................................................2614.0040000100000000000000010000000011000000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTAA...............................................................................................................................................................2623.5070000000000000000000000000021111100000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTCAA...............................................................................................................................................................2623.5070000000000000000000000000010200201010000000000000000000000000000000000000000000
droMoj3
AACCAACAAGTGTTTGCATCT-----------CAT------TAT-ATGGGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TT-GCTTTCAGCAT------------------TGTC----CCAT---------------CC-------------------------------GT--------------TTTGTGTCACTGGATTATCCACCTCAATCTCCATCTTCAT-TTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................231190549.0019054929361155441457518163827569
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................22117075.001707513529341070172111853145
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................2319237.0092377166192070
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2413042.0030425982122264249025
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2212246.00224628951319480
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................2211724.0017241421117060
.......................................................................................CTCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................................................................................221999.0099954366125373
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................211795.00795160289012038116
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................241423.004231314543816
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................211362.0036259123450
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191351.0035129247951150
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................211243.002431341111060
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................241223.0022361012131811
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................201217.0021752122070
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................231111.0011110021080
....................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................................................................................221107.0010700001070
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................181101.001012111960
...................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................................................................................23190.00900001890
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20175.0075244710300
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18165.0065220172420
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................24149.00493232390
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................23146.00462000431
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23137.00372043280
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22135.00355115230
...................................................................................................................................TATCACAGCCATTTTGATGAGAC..................................................................................................................................................................23128.00280000280
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................24126.00261000250
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19124.00241405500
......................................................................................................................................CACAGCCATTTTGATGAGTC..................................................................................................................................................................20124.00240000240
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................20124.00244003170
....................................................................................................................................ATCACAGCCATTTTGATGAGC...................................................................................................................................................................21122.00220000220
.....................................................................................................................................TCACAGCCATTTTGATGAGTC..................................................................................................................................................................21122.00220000220
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................................................................................25120.00201132130
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................22118.0018052380
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................20117.00171400030
.......................................................................................CTCTTCAAGG-GGTTGTGAAAT...............................................................................................................................................................................................................21115.00150100140
.......................................................................................CTCTTCAAGG-GGTTGTGAAA................................................................................................................................................................................................................20115.00150001140
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................21113.00130000130
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................19112.0012220080
.......................................................................................................................................ACAGCCATTTTGATGAGTC..................................................................................................................................................................19111.00110000110
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................2519.009301131
....................................................................................................................................ATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................2319.009200070
.....................................................................................................................................TCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2217.007000070
...................................................................................................................................TATCACAGCCATTTTGATGATC...................................................................................................................................................................2217.007000070
droGri2
----------------------------------------------------------------------------TTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-GCTTT----CA----TCACAGTGA-TCATTGTC----CCTC-G--C-----CGGGGCCGGTTCG--------TGCAGT----------------------------------CGCCGCCTCCTCCTGTTCCTCCTCCTTCTCCTTTGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................231455.00455293162
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................221180.0018014436
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................22128.0028280
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................21121.0021201
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................24119.0019118
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21117.0017170
.......................................................................................CTCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................................................................................2214.00422
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................2013.00321
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................2112.00220
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................1912.00220
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................2412.00220
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................2412.00220
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2311.00110
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................2411.00110
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2411.00110
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2011.00110
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................2211.00101
..................................................................................................................................ATATCACAGCCATTTTGATGAG....................................................................................................................................................................2211.00110
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................2320.50101
...................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................................................................................1960.17101
dp5
GCCCAACAAGTGTTCGGCTCG-----------TAC------TTT-TTG-GACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-CA-----G----------CAATCCATC-----ATCGATCGGGG-----CAGGGCAGGATGG--------AGCACAG--------------------------A----------------------------------------GTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23156311.005631101841297839000899764231911075
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................22115200.001520007342925767412772500731016
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................2313063.003063022672379631000
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................2211455.00145500479966280000
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................2111058.00105809190549492715012
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2411054.001054038408412391487002
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................221368.00368014212795220000
.......................................................................................CCCATCAAAC-GGTTGTGAAATG..............................................................................................................................................................................................................221333.00333045493217100009
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191187.00187017591830000
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................201160.001600275119180000
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................211160.00160056794120000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................241133.00133017844460000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................241119.00119086328693002
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21180.00800831201720002
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19151.0051013329240000
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18146.0046002013310000
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................23140.004000286510000
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22134.003404518070000
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20134.0034021114160000
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................21125.002500718000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23124.002400106530000
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................20123.002303116110001
....................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................................................................................22117.001700134000000
...................................................................................................................................TATCACAGCCATTTTGATGAGAC..................................................................................................................................................................23116.001600142000000
.......................................................................................CCCATCAAAC-GGTTGTGAAA................................................................................................................................................................................................................20115.00150251160000
...................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................................................................................23113.001300111010000
.......................................................................................CCCATCAAAC-GGTTGTGAAAT...............................................................................................................................................................................................................21112.00120252210000
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................23110.00100307000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................24110.00100033130000
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................22110.00100002620000
........................................................................................CCATCAAAC-GGTTGTGAAATG..............................................................................................................................................................................................................2119.0090500400000
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................1919.0090215100000
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................1819.0090140220000
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................2119.0090108000000
....................................................................................................................................ATCACAGCCATTTTGATGAGC...................................................................................................................................................................2117.0070007000000
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................2017.0070502000000
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2417.0070151000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................................................................................2516.0060122010000
.......................................................................................CCCATCAAAC-GGTTGTGAA.................................................................................................................................................................................................................1915.0050310000001
.......................................................................................................................................ACAGCCATTTTGATGAGTTT.................................................................................................................................................................2014.0040001030000
droPer2
--CCAACAAGTGTTCGGCTCG-----------TAC------TAT-TTG-GACAAA--AAAAAAACCGTCATCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-CA-----G----------CAATCCATC-----ATCGATCGGGG-----CAGGGCAGGATGG--------AGCACAG--------------------------A----------------------------------------GTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23114724.001472417346227965765406100
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................2214959.00495953163632380186332
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................211477.0047714592571623
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................241361.003610651531898
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191147.00147001670610
.......................................................................................CCCATCAAAC-GGTTGTGAAATG..............................................................................................................................................................................................................22193.0093134488200
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18158.005800331240
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................22142.00423311340
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................24140.004001512220
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21132.00320290210
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................22121.002100011100
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................23119.00190106120
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................24117.0017002951
.......................................................................................CCCATCAAAC-GGTTGTGAAAT...............................................................................................................................................................................................................21115.00152100111
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................22112.0012022350
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22112.0012011640
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23110.0010000370
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20110.0010211510
.......................................................................................CCCATCAAAC-GGTTGTGAAA................................................................................................................................................................................................................20110.0010111430
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................2019.009012240
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................2117.007001420
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................1916.006110130
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................................................................................2516.006010140
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................1815.005011300
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................2315.005000140
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................2515.005000320
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2014.004020200
.......................................................................................CCCATCAAAC-GGTTGTGA..................................................................................................................................................................................................................1814.004000040
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................2014.004040000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................2413.003000120
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................1813.003100020
.....................................................................................................................................TCACAGCCATTTTGATGAG....................................................................................................................................................................1913.003000210
...................................................................................................................................TATCACAGCCATTTTGATGAGTAA.................................................................................................................................................................2412.002000110
.......................................................................................................................................ACAGCCATTTTGATGAGTTT.................................................................................................................................................................2012.002000020
.......................................................................................................................................ACAGCCATTTTGATGAGTTA.................................................................................................................................................................2012.002001010
.......................................................................................CCCATCAAAC-GGTTGTGAAATGA.............................................................................................................................................................................................................2312.002200000
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2312.002010010
...................................................................................................................................TATCACAGCCATTTTGATGATC...................................................................................................................................................................2212.002000020
..........................................................................................................................................................TCGTGTGGA--ATGGC-CA-----G----------C..............................................................................................................................1812.002000020
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................1912.002002000
droAna3
CGCCAACAAGTGTGCTACA--AGAATCCCCTCAA-----------------------AAAAGGACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TC-GT-CA-----G----------AAAACCGTC-----A--GAAAGGGGCGCGG-----CG-------------------------------GC-------------------------AGG-----------------------ATGTCASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23122015.0022015284667547844153759788
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................2217585.0075851605589312511045419
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................211713.0071320152749593
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................241490.00490790716130195
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................231461.0046104510613
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................221134.00134011409011
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................22198.009833570017
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................24162.0062225213416
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................19157.00570824007
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20152.005251504127
.......................................................................................CTCCTCAAAG-GGCTGTGAAATG..............................................................................................................................................................................................................22150.005081032117
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19143.00432504032
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................24128.00280007021
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21128.00282151217
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18123.00230011516
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21121.00211070004
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20119.00190120106
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................23118.0018071307
...................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................................................................................21117.00170000017
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23115.0015111309
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................25113.0013190003
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................24111.0011120305
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22110.0010001108
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2019.009020007
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................2217.007000205
........................................................................................TCCTCAAAG-GGCTGTGAAATG..............................................................................................................................................................................................................2116.006300300
.......................................................................................CTCCTCAAAG-GGCTGTGA..................................................................................................................................................................................................................1816.006100401
.......................................................................................CTCCTCAAAG-GGCTGTGAA.................................................................................................................................................................................................................1916.006001410
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................1916.006010104
...................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................................................................................2016.006000105
.......................................................................................CTCCTCAAAG-GGCTGTGAAAT...............................................................................................................................................................................................................2115.005131000
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................2115.005100004
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................1814.004110002
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................1814.004040000
.......................................................................................CTCCTCAAAG-GGCTGTGAAA................................................................................................................................................................................................................2014.004010201
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2314.004110002
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................................................................................2514.004000211
...................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................................................................................1943.00120000012
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................................................................................2613.003030000
...................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................................................................................2313.003030000
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2413.003030000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTG................................................................................................................................................................2533.009000207
...................................................................................................................................TATCACAGCCATTTTGATGAGAC..................................................................................................................................................................2313.003030000
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................2113.003020001
...................................................................................................................................TATCACAGCCATTTTGATGAGCA..................................................................................................................................................................2313.003010002
...................................................................................................................................TATCACAGCCATTTTGATGATC...................................................................................................................................................................2212.002000200
.....................................................................................................................................TCACAGCCATTTTGATGAGTC..................................................................................................................................................................2112.002020000
droBip1
CGCCAACAAGTGTTCTCGA-----AGCCCCCCTAACCCGAAGAT------------------------CCATCCAGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-C----CAAAA-------------AATCGCA---TCGT-----GGGGCGCGGCAG------------------------------------GCGATTTCGT------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCCAACAAGTGTTTGTGATC-----------CAA------GAT--------------------------GTCTGATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT-T----CGGCAGCCAGAAG-----------------------------------------------------GAGTACCGCTTCGC--------------AAATC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AACCAACAAGTGTTCGTGATC-----------CCA------TAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCA------------------------------------------------------------------AATAT-CAATTTCCATAACCGATTGTAT----------------------------------CCSizeHit CountTotal NormTotal
No Reads
droEle1
AACCAACAAGTGTTCGTGATC-----------CGA------CAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CAGCAACTGGATA-----------------------------------------------------GA---------CATAAAT-CAGTTTTTATAAGC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCCAACAAGTGTTCGTGATA-----------TAT-------ATGTCG-GAT--------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCT------------------------------------------------------------------AAAAT-CAAGTTTCATAAGC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AACCAACAAGTGTTCGTGATC-----------CAA------CAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCCGGTCA------------------------------------------------------------------AAAAT-CGCATTTCGCAACCG------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
AACCAACAAGTGTTCGTGATC-----------CAA------CAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCACT----------------------------------------------------------------AAAAT-CATATTTCGTGACCGT----------------------------------------TCSizeHit CountTotal NormTotal
No Reads
droEug1
AGCCAACAAGTGTTCGTGATC-----------CGA------TAT----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT-T----CGGCATCTGGTCAAA----------------------------------------------------------------GTTAT-TATATTTCATAACC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AACCAACAAGTGTTTGTGATC-----------CAA------GCC----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-G----CGGCAGCGGATCA------------------------------------------------------------------AAAAA-CATATTTCATAACCGA----------------------------------------CTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................231165783.0016578300009944201181091664182401010603611605451917619748245746586311255633819740106192233306299727042181904227600000000000000000566728392216971422587164946183235822274463439755126159146205542879371792267136290424484076114561020767771101910881474048225943814701652392123400001000207332938646478823444743326123282716000005031221715493945439603303492116876362211509418925137735014260824210483919351634000164193600000462400000270402138478691679371461577639292287400970000308937882354167299532349272329803850466832023252440100264587409060473985712313960432391311053946608148821441791103391329712848396867632585305395138851089541105673243661171317191108277191428796147169253542177741607631344543652803132852271016516757514304837
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................22149902.0049902000089301122131350109301350137130334545501920193817111420812773252256662331272016503801597000000000000000002216151635532613015367201214474318815072717948621522354431167145310923291774568715712217303241742931245908354206523020002100020241932201211312106189106800000239225124932105608591385682332542144499651412226711033701907811660007110120000014130011042714962282581112212518103511400131100177237020311115616131914472974164312948151616706208192572715209013385419158260300105157215278310180432522114411871272159821119135715066133079872532234232271901214912227482613210744524351992055231165468416641384689226268850
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................2117096.007096000038200010100150021000090000212289299105400101001001002212105059400000000000000000274211840021012136717201224351727106820091843123301073890188036197923868444000000000020200000000000000000000060127165066207834912314214011621206110256101000000030000000000000000500021340309100000007801263713011377334925400113010112004023310862991181101422100100205391360103220114116728210711100140106251421737411740
.......................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................2214149.004149000000144200000000000000000366710516223050000000000200100000000000000000000000000001001761867501502207203400203141300001720417720013703034915211400000000005113878200000001000000000000076180305642828113177261192421340000019000200000000000000000000000140000000000100000000144122033100031304120008002012002000100010000000005270102949210974241285200001321021000202300120110004106226151106300
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2412296.00229600002100100100000010100000403000000011000120100021100000118100000000000000000201446319180010015056040110014100343202331001220404290251473800000000001041810021150102000000210900617205200341465112378096300870971013000306100000200000001322732101320203200110003746128210013180425111511130121130132012229142315221818224110625975763514620135035241591590144556411232817501452122006191320
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................2012048.00204800000000000000100400000100021110788643280000000000000000000004110000000000000000001006000000000114007006720640000000010001337650460181633738217839001400000100000000000000000000000000114162066223297109112168116029000101180000000000000000000000000000000001000022000000000003001004202000001100000000000000035000813000009974701000000201000000004000000000006600000011000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................2411450.001450000000000000000000000420002000000000111110300526533410000000000000000000000000014310610000071250101054112111000130116402022911742114000000000021071123620001500000000111170640440017431480360693000003916180001048000009500000021161202123210190000320035014000055000401140010010110020025670305750716739411211112151810174202152210100241029914010100030000510131000400
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................1911363.00136300000000000000100000000000200242411102220001000004230100000000000000000000000010030000000000000001121000000000000000005506043291200100000000001116391520332320101000002061003848022004542460901100000016230100000000000000000000010721130321104000000005998031700011616051200030020210316001010363034124910361470006324541561573111021510013030101011000000001410100101000
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................221656.006560000401232000000000000000000000000000000002010001100000000000000000000000000000032000000020015001010000100010020100001860403618031960000000000000000000000000000000110001221010004292191310312000003100000000000000000000000000000000000000000000000000031000324100000011000000000120101937114306218560000135940100027330011100000000000000000500000001100
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................181535.0053500000000000000000000010000002212425300000000000000000000000000000000000000000011000000000000000010001004000000000100500210000002302100210000000000000000000000000000000006046052124247943120000022000000000000000000000000000000000000000000000001000100000000000000000000001000000000000110000025010000000000000000000000000000000000000000001
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................191479.004790000000000000020060000000001971317021000000000000000000000110000000000000000000000000900000024009010102800000000001000110100020612200320000000000000000000000000000000082002111187151041721010006000000000000000000000000000000000000000000000000101500003801110000900000000000000001000000000007573100100200000000000000000000000008110000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................251450.004500000000000000000000000000000000000221100030300023001000000000000000000000000000009000400000100400000012000100002100202000000001022000000000001512033130100000000000000111206002407160700000031300000000100000190000000000000310032013000100000100000001100000101000000000000000263810272826258101000225112200456440100005215100000000000004110000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................231431.00431000000000420001000000000000000000000000000000000000000000000000000000000000000001102500030000010000111800000000100010200202140202000000000000001000010000100000000000017707007717060132000002800000000000000000000000000000000000000000010000340230000250200000200010000001000032201032141801201915143565911005111001101000010000000000110010101100
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................221345.0034500000000000000200000001000100000000000000110000010010000000000000000000000000000200300000004002000000130000000000000024010217030200000000000000000110000000000000000001112010003803060300000030000000010000000000000000200000010001100000000001101840013801110012110010102054100511110376821309101013130310023430411101100101000000000100100201400
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................231337.0033700002000111020000000000000000000000000100000000020000000000000000000000000000110000000001000000001000200100000101010010000100202100000000000000000000000200000010000036050001304045045400000101000000000000000000000000001000000000000000000002000000013000000000001000000000101368316141452021413181931100022320130300000000000000000100000002000
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................221302.003020000100000010000000000000000000000000000000000003010000000000000000000000000000000001000000101001000150102000000000000000001000210000000000000000120100000000000010004504000903035133100000160000000000000000000000000000000000000000000000000011000046040110110011010000010001044327592010118172641100020102113300000000000000000000000001100
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................181301.0030100000000000000000000000000100000000020000000011100010000000000000000000000000000000000000000000000000000000000000000210300280102000000000001220000000000000000000011091309000200130003000000411000000000000000000000020010000001000000000000030115100115283510010800010100513201062921009231000895190400000010000100000100000000000200000000001
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................231231.002310000400243030000000000100000000000000000000000000010000000000000000000000000000000000000410000000000030000000010000031030323010410000000000000100000000000000000000001016030071117190130000001700000000010000000000000000000000000000010001000100010000480101000000000000000000003000242001007101051001013000200000312100100000000500000003000
........................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................211217.0021700001000000000000000000000030140030000000000000000000000000000000000000000000000200020000002022010001200000000001001010101120000000000000000120000000000000000000000007043310140578150000070000000000000000000000000000000000000000000000023001000030000000040000010000000000000000001000813718133030000003038000001000000000011700200000000
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................211192.00192000000000000000000000000000010000000000000000000000000000000000000000000000000001202112100001102200222745000020004350100002010613013000000000000000000000000000000000010220200230410000000004000000000000000000000000000000000000000000000003600100001400000000000000000000000331000000000011150500000000000000000000100000000100000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................................................................................261192.0019200000000000000000000010000000000000103000000010010000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000150000201000200000000000001000001000000000000001010000003000001400000000000001020010700000000000000000000000000000000000000000018239152228910000000012000014201000000218000000000000000010000000
.......................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................211163.0016300000000020000000000000000000134001000000000000000000000100000000000000000001120155532000001017000022500000000131000000000000011000000000000040000000000000000000000061602204413072650000020000000000000000000000000000000000000000000000012000000000000000000000100000000000000000000000121317510000000000000000000000000010100100000000
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................221142.001420000100000010000010000000000000000000000000000000000100001000000000000000000012010036000000000100100080000000012000000000000000000000000000000000000000000000000000006100100504000200000010010000000000000000000000000000000000000000000022001000020000100000000000000001001272907190000012232300002101111002000000000000000000000003000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................241138.001380000000000010000000000000010000000000000001000000000000000000000000000000000000001010000000000100000050001000000100000010005010430000000000101000000000000000000000001301001603020200001040000000000000000000000000003000000001000000420013001000037100000040000002010000100203010100100343155110000000011100001200000000000500000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTATC...............................................................................................................................................................26198.009800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGA........................................................................................................................................................................17493.7537500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050300000000000000010000000000000000000000000000010000000000000000000000000000000000000000000010110274004538000071161715300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................21179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000010000000000000001000000001005000000000000000000000000000000000000770400280105050000005000000000000000000000000000000000000000000000000000000001301000000000000000000000020000000000020310000020000000000000000000000000100000000000
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20177.0077000000000000000000000000000000470100000010000000000000000000000000000000000000000000000000000000026200000000000110000000000000021000000000000000000000000000000000000240100090401000000001000000000000000000000000000000000000000000000002100000000000000001000000000000000230202010100003061110000000000000000000000000000000000000000
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................18175.0075000000000000000000000000000010420000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000200000000000001000000100000000000000000350400120410020000000000000000000000000000000000000000000000000000003300000000000000000000000000000000451202010010010144700000000000100000000000000000000000000000
droSim2
AACCAACAAGTGTTCGTGATC-----------CAA------GCC----------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAGCGGATCG------------------------------------------------------------------AAAAA-CATATTTCATAACC--------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2316948.006948160210460112832914118621119338485400001
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................2211889.00188919962514339734131314131767300000
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................2111309.001309291492162872000164300000
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................181646.0064610006957500000000001
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................191288.002881073001316400000100000
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................201240.00240260032818000111000000
.......................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................221169.00169100156238000109700000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................24176.007600010061029224400000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................25158.00580011000729162200000
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................19147.0047602011000043300000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................................................................................26140.0040000000422292100000
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................22137.0037200281200020200000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................24126.00260001100000201300000
...................................................................................................................................TATCACAGCCATTTTGA........................................................................................................................................................................17426.0010400000012165962000000
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18124.0024700002000141000000
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21121.0021200140400000100000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTCG...............................................................................................................................................................26119.0019000001900000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................22118.0018130000000000500000
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................22118.0018100200000006000000
.......................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................21116.001641110700020000000
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................21114.0014140000000000000000
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21111.001100020001100700000
...................................................................................................................................TATCACAGCCATTTTG.........................................................................................................................................................................1649.2537000000100036000000
........................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................2118.00800020300000300000
.......................................................................................CTCCTCAAAG-GGTTGTGAA.................................................................................................................................................................................................................1918.00800000800000000000
..........................................................................................................................................GCCATTTTGATGAGTT..................................................................................................................................................................1618.00800000000017000000
.......................................................................................CTCCTCAAAG-GGTTGTGA..................................................................................................................................................................................................................1817.00700000700000000000
..............................................................................................................TCGACTATT--A-TCTACTCA.........................................................................................................................................................................................1817.00700500200000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................2315.00510000000000400000
.......................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................................................................................2015.00500000500000000000
...................................................................................................................................TATCACAGCCATTTT..........................................................................................................................................................................1554.2021000000001119000000
....................................................................................................................................ATCACAGCCATTTTGATG......................................................................................................................................................................1814.00400000400000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGCAA.................................................................................................................................................................2414.00400000000004000000
...................................................................................................................................TATCACAGCCATTTTGATGG.....................................................................................................................................................................2014.00440000000000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................2414.00400020000010100000
.......................................................................................CTCCTCAAAG-GGTTGTGAAATGT.............................................................................................................................................................................................................2313.00300001000010100000
........................................................................................TCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................2013.00310000100010000000
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................2213.00320000000100000000
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................1813.00300000000100200000
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................2013.00300000300000000000
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................1913.00310001000000100000
........................................................................................TCCTCAAAG-GGTTGTGAA.................................................................................................................................................................................................................1813.00300000300000000000
..........................................................................................................................................................TCGTGCGAA--TC-T----CGGCAG.........................................................................................................................................1813.00300300000000000000
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2412.00200000100000100000
.......................................................................................................................................ACAGCCATTTTGATGAGTTA.................................................................................................................................................................2012.00200000000101000000
..................................................................................................................................ATATCACAGCCATTTTGA........................................................................................................................................................................1832.00600000600000000000
....................................................................................................................................ATCACAGCCATTTTGATGAGTTTCG...............................................................................................................................................................2512.00200000200000000000
...................................................................................................................................TATCACAGCCATTTTGATGAGCA..................................................................................................................................................................2312.00200000000002000000
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2312.00200020000000000000
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2012.00200000000000200000
.......................................................................................................................................ACAGCCATTTTGATGAGTTAA................................................................................................................................................................2112.00200000000002000000
.......................................................................................CTCCTCAAAG-GGTTGTGAAATGTCG...........................................................................................................................................................................................................2512.00200001100000000000
..........................................................................................................................................................TCGTGCGAA--TC-T----CGGCAGCG.......................................................................................................................................2012.00220000000000000000
................................CAA------GCC----------------------------ATAGTTCTTACGTAA.....................................................................................................................................................................................................................................2111.00100000000000100000
...................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................................................................................2011.00100000000001000000
droSec2
AGCCAACAAGTGTTCGTGATC-----------CAA------GCC----------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----GGTCAGCGGATCG------------------------------------------------------------------AAAAA-CATATTTCATAACC--------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23146028.00460286065463350711369
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................2216525.00652543510414434543
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................211597.00597571448478
.......................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................221491.0049117637791
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191290.002900022367
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................241165.00165488172
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................22168.006858082
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21158.005830523
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................24152.0052313612
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19152.005270045
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18151.005100942
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................23137.003711278
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23135.0035101123
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................24132.0032011813
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20131.003140027
........................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................21127.002710818
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21127.002726001
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................22113.00130058
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22112.001210110
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................25111.00112153
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................18110.001000100
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................2016.0066000
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................2015.0050050
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................2214.0040022
.......................................................................................CTCCTCAAAG-GGTTGTGTT.................................................................................................................................................................................................................1914.0042002
.......................................................................................CTCCTCAAAG-GGTTGTGAA.................................................................................................................................................................................................................1914.0040040
...........................................................................................TCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................1814.0041003
.......................................................................................CTCCTCAAAG-GGTTGTGA..................................................................................................................................................................................................................1814.0040013
.......................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................................................................................2013.0031011
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2013.0030012
.......................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................2113.0030030
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................1813.0030012
...................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................................................................................1952.20111046
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2412.0020020
...................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................................................................................2112.0021001
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................................................................................2612.0020020
...................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................................................................................2012.0020002
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................2412.0020011
........................................................................................TCCTCAAAG-GGTTGTGAAA................................................................................................................................................................................................................1912.0021001
.......................................................................................CTCCTCAAAG-GGTTGTGAAATA..............................................................................................................................................................................................................2211.0010010
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................2111.0011000
.......................................................................................................................................ACAGCCATTTTGATGAGC...................................................................................................................................................................1811.0010001
...................................................................................................................................TATCACAGCCATTTTGATA......................................................................................................................................................................1921.0020002
........................................................................................TCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................2011.0010001
....................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................................................................................2211.0010001
....................................................................................................................................ATCACAGCCATTTTGATGAGG...................................................................................................................................................................2111.0011000
...................................................................................................................................TATCACAGCCATTTTGATGAAA...................................................................................................................................................................2211.0011000
...................................................................................................................................TATCACAGCCATTTTGATT......................................................................................................................................................................1911.0011000
droYak3
AGCCAACAAGTGTTCGTGATC-----------CAA------GCC----------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAACTTATTT----------------CAT-----GTATT-------------------------------------TCAAA-CATATTTCAT------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23135057.0035057441354185946623219959093340000
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................2214356.0043563943711765416081477771000
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................2311380.001380011361351000000
.......................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................2211187.001187069602114420000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................241331.003310151303537104100000
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................221274.00274011915311000000
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................211256.0025670343018307040000
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................221215.002152020331600000
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191157.0015720358325930000
.......................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................21141.0041203621000000
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18141.004110011101900000
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................21137.0037032500000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................24135.00350015631010000
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20132.0032012820100000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................24131.0031001651810000
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21130.0030041461500000
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................23127.0027002212200000
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19126.0026146301200000
.......................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................................................................................20116.0016011100400000
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................23113.0013001010200000
....................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................................................................................22113.0013001300000000
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20110.001044101000000
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................1819.00900620100000
...................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................................................................................2318.00800800000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................2418.00801302200000
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................2218.00830011300000
........................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................2117.00702220100000
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2017.00702203000000
.......................................................................................CTCCTCAAAG-GGTTGTGAAATGT.............................................................................................................................................................................................................2316.00600600000000
...................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................................................................................2116.00640200000000
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................2214.00400110200000
......................................................................................................................................CACAGCCATTTTGATGAGTC..................................................................................................................................................................2014.00400400000000
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................2114.00420001100000
..............................................................................................................TCGCCTATT--A-TCTACTCA.........................................................................................................................................................................................1813.00310200000000
..........................................................................................................................................................TCGTGCGAA--TC-T----CGGCAACT.......................................................................................................................................2013.00330000000000
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2313.00302100000000
...................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................................................................................2513.00301100100000
.......................................................................................CTCCTCAAAG-GGTTGTGAA.................................................................................................................................................................................................................1912.00200100100000
.......................................................................................CTCCTCAAAG-GGTTGTGAAATGA.............................................................................................................................................................................................................2312.00200200000000
droEre2
AGCCAACAAGTGTTCGTGATC-----------CAA------GAC----------------------------ACAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----AAAAAGCGGGTTA-----------------------------------A------------------------------GAAAA-CATATTTCAAAAGC--------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................................................................................23143373.0043373224714749423340366811738839
...................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................................................................................22114339.001433913171875135055514290991
...................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................................................................................2111143.00114312846721988700
...................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................................................................................231778.0077855728201910
...................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................241394.0039426177479131220
....................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................................................................................221273.0027316492410120
...................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................................................................................221235.002350210600190
.......................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................221189.0018915976912770
...................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................................................................................231164.00164012011600
.......................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................................................................................191148.001481247443510
....................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................................................................................211101.00101861200030
...................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................................................................................23195.0095213020780
...................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................................................................................24193.0093541652340
...................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................................................................................24185.008514231305300
...................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................................................................................19154.005465000421
...................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................................................................................20152.0052153500290
.......................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................................................................................18149.0049101070310
...................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................................................................................24146.004671400340
.....................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................................................................................21145.0045517230180
...................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................................................................................22129.002931301210
......................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................................................................................20126.002619210130
......................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................................................................................19112.001210010100
...................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................................................................................25111.00110040070
....................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................................................................................20111.001110010000
...................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................................................................................18110.00100001090
........................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................................................................................18110.00100013060
.....................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................................................................................2018.0081100060
.......................................................................................CTCCTCAAAG-GGTTGTGAAATT..............................................................................................................................................................................................................2216.0060004020
...................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................................................................................2315.0050400010
.......................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................................................................................2015.0050010040
...................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................................................................................2215.0050011120
....................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................................................................................2314.0041100020
........................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................................................................................2114.0041001020
....................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................................................................................2214.0040400000
......................................................................................................................................CACAGCCATTTTGATGAG....................................................................................................................................................................1814.0040000040
...................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................................................................................2113.0030100020
..................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................................................................................2413.0031101000
...................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................................................................................2113.0030001020
.......................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................................................................................2113.0030011010
...................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................................................................................1972.001410002110

Generated: 10/20/2015 at 07:42 PM