ID:

dvi_9994

Coordinate:

scaffold_12963:1126209-1126359 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.0 -6.7 -6.5

Flybase annnotation

exon [dvir_GLEANR_1472:3]; CDS [Dvir\GJ14638-cds]; intron [Dvir\GJ14638-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGAATTTATATAGTTTATGGGGTTGGAAATGCTTCATTCTGCCTGTTATGTACAATTGCACAAATGCATTAGCCATTTTCAATGGGATCAGCGTATATTAAATGAGACGTGTTTTGGAAAATCATTTTCGAATTTGGTTTTGGCAGGTTGCCAATCAAACAAATGATATATTTCAATTATCTTTTGATTTTACCTAAAGCAACCAACAAATCCGGGCCGTTGCACTGGCAACTGGAGAACAAACGCGCC
*******************************************************************************.........................((((((....((((((((....))))))))....)))))).....******************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
SRR060679
140x9_testes_total
SRR060681
Argx9_testes_total
SRR060680
 9xArg_testes_total
SRR060670
9_testes_total
SRR060655
9x160_testes_total
M061
embryo
SRR060676
9xArg_ovaries_total
SRR060689
160x9_testes_total
SRR1106725
embryo_14-16h
V116
male body
SRR060666
160_males_carcasses_total
SRR060663
160_0-2h_embryos_total
SRR060659
Argentina_testes_total
SRR060685
9xArg_0-2h_embryos_total
SRR060682
9x140_0-2h_embryos_total
SRR060686
Argx9_0-2h_embryos_total
M047
female body
V053
head
M027
male body
.........................................TGCCTGTTATGTACAATTGCACA........................................................................................................................................................................................... 23 0 1 5.00 5 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGGGGTTGGAAATGCTTCATTCTGC............................................................................................................................................................................................................... 25 0 1 4.00 4 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CTGCCTGTTATGTACAATTGCA............................................................................................................................................................................................. 22 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTCAATGGGATCAGCGTATATTAAATG................................................................................................................................................. 27 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TACAATTGCACAAATGCATCAGCCATTT........................................................................................................................................................................... 28 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CTGCCTGTTATGTACAATTGCAC............................................................................................................................................................................................ 23 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGGAAATGCTTCATTCTGCCTGTTATG....................................................................................................................................................................................................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTTGGAAAATCATTTTCGAATTTGGTC.............................................................................................................. 27 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGGAAATGCTTCATTCTGCCTGTTAT........................................................................................................................................................................................................ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCCGGGCCGTTGCGCTGGCAACTG............... 24 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TCATTCTGCCTGTTATGTACAATTGC.............................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTTTGAAAATCATTTTCGAATTTGGT............................................................................................................... 26 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGGGGTTGGAAATGCTTCATTCTGCC.............................................................................................................................................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTCAATGGGATCAGCGTATATTAAA................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TACAATTGCACAAATGCATCAGCCAT............................................................................................................................................................................. 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAAATGAGACGTGTTTTTGAAAATCA............................................................................................................................. 26 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTAGCCATTTTCAATGGGATCAGCGTA.......................................................................................................................................................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGGAAATGCTTCATTCTGCCTGTTATC....................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGGAAATGCTTCATTCTGCCTGTTATC....................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GGCAACTGGAGAACAAACGC... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CTGCCTGTTATGTACAATTGCACAAAA........................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CTGCCTGTTATGTACAATTGCACAA.......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTCGAATTTGGTTTTGGCAGG...................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AAATGAGACGTGTTTTTGAAA................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CAATGGGATCAGCGTATATTAAATGA................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTTTCAATGGGATCAGCGTATATTAAA................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTCATTCTGCCTGTTATGTACAATTGC.............................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGCACTGGCAACTGGAGAACAAACGCGC. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................ACAATTGCACAAATGCATTAGCCATTT........................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGGAAATGCTTCATTCTGCCTGTTA......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGTACAATTGCACAAATGCATCAGCCATT............................................................................................................................................................................ 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTCAACCAACAAATCCGGGC................................ 20 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATTAAATGAGACGTGTTTTGGAAAAA............................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................TGCACAAATGCATCAGCCATTTTCAATG..................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGGAAATGCTTCATTCTGCCTG............................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGGGCCGTTGCGCTGGCAAC................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................GCTTCATTCTGCCTGTTATGTACAAT................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATTTCGAATTTGGTTTTGGCAGGT..................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TCTGCCTGTTATGTACAATTGCC............................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGGGATCAGCGTATATTAAATGAGACG............................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TATGTACAATTGCACAAATGCATTAGC................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGCATTAGCCATTTTCAATGGGATCAG.............................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGGAAATGCTTCATTCTGC............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGCGCTGGCAACTGGAGAACAAACG.... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ACGTGTTTTTGAAAATCATTTTCGAAT.................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ACAAATGCATTAGCCATTTTCAATGG.................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGGAAATGCTTCATCCTGCC.............................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTGCGCTGGCAACTGGAGAACAAAC..... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGGGGTTGGAAATGCTTCATTCTTC............................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CTGCCTGTTATGTACAATTGCACA........................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTCAATGGGATCAGCGTATATTAAATGA................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................CCTGGAAATGCTTCATTCTGCCTGTTATG....................................................................................................................................................................................................... 29 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AATGAGACGTGTTTTTGAAAATCATTT.......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCAGCCATTTTCAATGGGATCAGCGT........................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGCATTAGCCATTTTCAATGGGATCAGC............................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGTGTTTTGGAAAATCATTTTCGAATT................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTCTGCCTGTTATGTACAATTGCAC............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGCCTGTTATGTACAATTGCACAAAT........................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CAAGAATTTATATAGTTTATGGGG................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGCTTCATTCTGCCTGTTATGT...................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATGCTTCATTCTGCCTGTTATGTACA................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGCATCAGCCATTTTCAATGGGATCA............................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TACAATTGCACAAATGCATCA.................................................................................................................................................................................. 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGCCTGTTATGTACAATTA............................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTGGCAAGTTGAGAAGAAACGCGC. 24 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTCAGTGGGATCAGCCTAT......................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............TTTATGGGGTTGGAAATGCTTC...................................................................................................................................................................................................................... 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTTTTCGAATCTGGTGTTG........................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............TTTATGGGGTTGGAAATGC......................................................................................................................................................................................................................... 19 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................GTACCTCAAGCAACCAAAAAA....................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................ATCAGCGTTTATTAAACGA................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................AAATCCGCGACGTTGTACT....................... 19 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................CAAATCCCGGCCGATGCACC....................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................TTTCGAATCTGGTGTTGGTA........................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................CGGATCAGCGTAGATTATA................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................TGCTTCATTCTGCCTGTTA......................................................................................................................................................................................................... 19 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTCGAATCTGGTGTTGGTA........................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTCTTAAATATATCAAATACCCCAACCTTTACGAAGTAAGACGGACAATACATGTTAACGTGTTTACGTAATCGGTAAAAGTTACCCTAGTCGCATATAATTTACTCTGCACAAAACCTTTTAGTAAAAGCTTAAACCAAAACCGTCCAACGGTTAGTTTGTTTACTATATAAAGTTAATAGAAAACTAAAATGGATTTCGTTGGTTGTTTAGGCCCGGCAACGTGACCGTTGACCTCTTGTTTGCGCGG
******************************************************************************************************.........................((((((....((((((((....))))))))....)))))).....*******************************************************************************
Read size # Mismatch Hit Count Total Norm Total V116
male body
M027
male body
SRR060665
9_females_carcasses_total
SRR060666
160_males_carcasses_total
SRR060678
9x140_testes_total
M047
female body
GSM1528803
follicle cells
SRR060682
9x140_0-2h_embryos_total
SRR060685
9xArg_0-2h_embryos_total
............................................................................TAAAAGTTACCCTAGTCGCAT.......................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................CAATGGCTTTCGTTGGTTGT......................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................ATGGCTTTCGTTGGTTGTC........................................ 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................CCGTTGACCTCTTGTTTGCG... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................ACCTTTACGAAGTAAGACGGACAAT......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TCGCTGGTTGTTTAAGCCC................................. 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0
................................CGAAGAAAGACGACCAATACAT..................................................................................................................................................................................................... 22 3 12 0.17 2 0 0 0 0 0 0 2 0 0
......................................................................................................................................................................................................TTCGTTGGGTGTTTAGGATC................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...............................................................................................................ACGAATCCTTGTAGTAAAAGC....................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................ACCGGCAACGCGACCGTTGGC............... 21 3 15 0.07 1 0 0 0 0 0 0 1 0 0
..................................................................................................................AATCCTTGTAGTAAAAGC....................................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:1126159-1126409 + dvi_9994 CAAGAATTT----ATATAGTTTATGGGGTTGGAAATGCTTCAT-TCTGCCTGTTATGTACAA-------TTGCACAAATGCATTA--GCCATTTTCAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------TGA-----------------------------------------------------GAC--GT--------GT------T---TTGGAA-AATCA---TTTT-----------------------------------------------------------------------CGAATTTG-----------GTTTTG--GCA--G--------------------------------GTT-GCCAATC---------------AAACAAATGAT------A----------------------------------TATTTCAA------------------------------------------------------T------TA------------------------------------------------------------------------------------------TCTTTTGATTT------TACCTA----AAGCAACCAACAAA-----------------------------TCCGGGC---------------------CGTT--GC---ACTGGCAACTG-GAGAACAAACGCG---CC
droMoj3 scaffold_6500:11372173-11372395 - CAAGAATAT----ATATACTTTGTGGGGTCTGCCACGCCTCCT-TCTCCCTGTTACATACAT-------TTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAG-------------------------------------------------------------------------------------------------------------------------GAAAAG-------CAGCAGAAGAACAACACGAACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGGCAATA------TGTTAA----TAACAAAAGA-----------------------------AATTATCAATTACCTGGCAGCGACAGCAACAGACAT--TT---TCGG--------------------TCAGTT
droGri2 scaffold_15110:24353624-24353811 - CAAGAATAT----AAA----TTATGGGGTTGGAAATGCTTCCT-TCTGCATTTTATATAC-------------ACAACTTCATTACACCCATTGTTAA-------TACGTTCA--AAGTATAATAAG-------------------------------------------------------------------------------------------------------------------------TGAACA-------CAT---------------------------------------------TT--------TTT--------------C----TG---TTTT-------------------------------------------------------A-------TACATTTTT-ATTTGT-----------TAGTTGG--TTTA----------------------------------T-TT-----A---------------AAACTAAATAA------A----------------------------------TATTTAA---------------------A---------------------CAGT--------TT---------------------------------------------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------T---TATG--------------------TTTTTA
droWil2 scf2_1100000004967:1178138-1178387 + CAAGAATAT----ATATACTTTATGGGGTCGGAAACGTCTCCT-TCTGTGCGTTACAAACAT-------CTGACCAATTTTATAATACCCTC-------------TGC-----AAGGGTATAAAAAA-------------------------------------------------------------------------------------------------------------------------GAAATA-------TA--------------------------AGC------------A--ACATGTTGCTCCAGA--------------CG----ATCA--T--------------------------------------------------------T-------AGC--------ATTAT-----------GTT--GTTG--CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACACGAAAAATCCGATCTACCAT--------------------A--------ACAG-------------------GTTCGA------T--------------------------TCAAACCACACGCAACCGCAAGCGAATACGTCA-------------------------------G---AATGGCAGCTG-ATGAGTGGGCGTG---CC
dp5 Unknown_group_233:722-955 - CAAGAATAT----ATATACTTTATGGGGTCAGAAACGATTCCT-TCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTC-AT----TTTGAGTATCGGGTATAATAAA-------------------------------------------------------------------------------------------------------------------------AACAGA-------ATGT---------------------------------------TCC--GT--------AC------TTTA-------AATTA---ATTGTGTGTATTGCGTAGCCAGTGCAAATT------------------------------------------------------------------------------------------------------------------------------------------------GAT------T----------------------------------TG---------------------------------------------------------------------------------------------------------TTAT--------------------A--------ATAA-----------------TAATCCGA------T----------------------CTGA----TC-----------TAGAC-------------T---------C---GGCAGC--------------CTAGAAGTTA-TG----------GCCATT
droPer2 scaffold_5:2677859-2678078 + CAAGAATAT----ATATGCTTTATGGGGTCGGAAACGCTTCCT-TCTGGACGTTACACAAGTCCACTTTTAGCATAAATCTAATATACCCCTCAACCC-AT----TTTGAGTATCGGGTATAACAAT-------------------------------------------------------------------------------------------------------------------------TATCTG-------TTCCCCAAAAATGTTCTAAATGCGTTTC---AGTGGTTACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCATATTTTTGATAAATTTTAA-TTGTATCCTGAGATCTTTTAA-----------------------------------------------ATTAG-------------------------T--C--------------------AT-----------------------------------------------------------------TA---------------------------------------------------------------------------------------------------A
droAna3 scaffold_13417:731319-731602 + CAAGAATAT----ATATACTTTATAGGGTCAGAGATGTCTCCC-TCACTGCGTTGCAAACTT-------TTGACCAAAATTATAATACCCTC-------------TGC-----AAGGGCATTAAAAT-------------------------------------------------------------------------------------------------------------------------TAAACT-------TT-----------------------------TACAGTCATGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTAATTTTCAAATGGTTGGA-TGATGTCGACAATTTCCTTCAATATAATAGTAAACAAGTTAACAATAGTCAAGCTGCTATTA--TTTA------------------------------------------CTGACTTCTTAAA--------GTAG-------------------ATCCAT------T--------------------------CCGAAATATGCGTATGT----------------AGA---------------------TGCT--GC---TCTGGCGAATTAGAGCATCATCGCA---CA
droBip1 scf7180000396314:10209-10427 + CAAGATTAT----ATATACCTTATAGGGTCGGAGATGTCTCCT-TCACTGCGTTGCACACTT-------TTGGACAAAATTATAATACCCTC-------------TGC-----AAGGGTATACAAAATTGACTCAGTTAGAAGCAAAATGAATG--AAGATAA--TTTTGGCATTGATT---------------------------------------------------------------------CCTCGGTTTGGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------C-AT-----C---------------GAAA------C------A----------------------------------TATTGCAA------------------------------------------------------T------GTTTTTAGTCCCT------------------------------------------------------------------------------------------------TACAAA----AATCAATAAAAAAA-----------------------------TTCAA---------------------------------------------------------------G
droKik1 scf7180000302377:9631-9887 + CAAGAATAT----ATATACTTTATAGGGTCGGAAACGTCTCCT-TCACTGCGTTGCAAACTT-------CTGACTGAAATTATAATACCCA---------------GC-----AAGGGTATAAAAAT---------------------------ACCAAATGGG--------ATTAAATCTATAATTTGTAAAATTTTTTTATTTAAAAACGCATTTTTAACCACTGTGCAGTGGACAAATTAAAAAAAAAACA-------AA--------------------------ACC------------A--AAATTTTGTTT---------------------------------------------------------------------------------------------TA----------------------------GT--T-----CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA----ATACACCAAACAAG----TT-----------TCAAG-------------T---------C---AAT-----------AT---CTTATCAACTG-GA---------------G
droFic1 scf7180000453253:144228-144437 - CAAGAATAT----ATATACTTTATGGGGTCTGAGGTGTCTCCT-TCACTGCGTTGCAAACTT-------CTGGCCAAAATTATAATACCCT-TTGCTC-------TGC-----AAGGGTATAAAAAT-------------------------------------------------------------------------------------------------------------------------AAATAT-------ATAAA------------------------------------------------------T------A---ATGGAA----------------------------------------------------------------------------------------------------------------------------AAAAA-------------------------------------------------------TTCTAATGTCGTTGTTTTTAATCCCACGAGCATGATTTTTGGAA-CCTCAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAATAT------T-CTTA----AATCAAGAAAAAAA-------------------------------------------------------------------------------------------------T
droEle1 scf7180000490502:1456-1694 - CCAGAATGT----ATATACTTTATAGGGTCGGAGATGTCTCCT-TCACTGCGTTGCAAACTT-------CTGACTGAAATTATAAAACCCTC-------------TGC-----AAGGGTATACAATT----------------------------------TTT--------TTTAAA----------------------------------------------------------------------TGT-----------------------------------------------------AAC--TT--------CTGTTACG---------T-AATTT---AT----------------------------------------------------------------------TT-TTAAATTC-----------TTTTTG--ACT--T--------------------------------ATT-A--------------------------------------ATAGTTT----------------------------------------------------T---G---------------------CAGT--------TG---------------------------------------------------------------------AGATTAC---------------------GCTTTCAATTC------TATTAA----AATCAAGAAA-----------------------------CCATATCGTAT---------------------AGCT--GT---CATAGGAACTA-TCAAA----------TAA
droRho1 scf7180000779218:6574-6810 + CAAGAATAT----ATATACTTTATAGGGTCGGAAACGCTTCCT-TCTAGCTGTTACATACTT-------TTGCACGAATACAATATACCCTTTTACTC-------TACGAGTAACGGGTATAATGAT---------------------------TCAAATTAAGAGTTTGATATA-------------------------------------------------------------------------GAACAGATTAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------AATTTAAAAAT------G----------------------------------TAATGAGA------------------------------------------------------TTGTCATTT--TTTATTGTGTATAAA----------------------------------------------------------------------------------------------------GTAC----AAAGAA-----------------------------TTCAA----------------GCAAG------AA-AACGAGTGGCGAAGG-AAGAAGGAAC------GC
droBia1 scf7180000302178:2988-3208 + CAAGAATAT----ATATACTTTATGGGGACGGAAACGTCTCTTATGACTGCGTTCCAAGCTT-------CTGACTGAAATCATTATACCCTC-------------TGC-----AAGGGTACAGTATT-------------------------------------------------------------------------------------------------------------------------TATATGTTTGGTGTTTT------------------------------------------------------------------TTAACA-AATAA---CCT--------------------------------------------------------T-------AGC----TTGTA----------------------------------------------------------------------------AATGACATTT-------------------------------------------------------------------------------TTAA-----------------------------------------------ATTAG-------------------------T--T--------------------AAAAATTTC---------------------AATTTAAATTT------TATCAA----AATCAGACGA-----------------------------CTATATCATAT---------------------AGCT--GT---AATAGTA---------------------AC
droTak1 scf7180000415861:6490-6717 + GAAGAATAT----ATATACTTTATAGGGTTGGAAATGCTTCCT-TCTAGCTGTTACATACTT-------TTGCACGAATACAATATACCCTTTTACAC-------AGCGATCG-----CAA-----G-------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------------------------------------------------GAGTTACTTTTTTAAAAAAATTGACAAATAAGTTTTATTTTT--------CCATTTTT-----------ATT----------------AAAAATG--------------------TTC-----------------------------------ACATATCACTGT-------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------TGCTTCAATTT------TTATTATAAAAATCAACAAATAAG---------------------------------AGT---------------------T------A---TTTG--------------------TCAACT
droEug1 scf7180000409672:3721523-3721757 - CAAGAATAT----ATATACTTTATAGGGTCGCAAAAGCTTCCT-TCTATCTGTTACATACTT-------TTCAACGAATCTAGTATACCCTTTTACTC-------TACGAGTAACGGGTATAATAAA-------------------------------------------------------------------------------------------------------------------------GAAAAG-------CCTCC-----------------------------------------------------TAA--------------CG----AATA--A--------------------------------------------------------A-------AGCTTGGTG-GTATTT-----------GTGAAGA--ATTG----------------------------------T-TT-----C---------------AAAATATATAA------A---------------------------TTTTATCT-TACTAAGTTT--------------------------------------------------T------GTTTTGAGCCTTT------------------------------------------------------------------------------------------------TACC--------T---CTAAAAAT-----------------------------TTTAGAC---------------------C-----GT---CATTG-------------------G---CA
dm3 chr2R:1580467-1580678 + CAAGAATATACATATATACTTTAAATAGTCGGAAACGCTTCCT-TCTGTCTGTTACATACTT-------TTCAACGAATCTAGTATACCCATTTACTC-------TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAACT-------ATGA---------------------------------------T------------------AACGTTTT-------TATTA---TTTT-----------------------------------------------------------------------CGATAATT-----------GTCTTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------T---A------------------------------------------------------------------------------------------------------------------------------------TAGTTGAAATTCATTATTATCAA----AAACAACGAAGAA--------------------------------------------------------------------------------------------------A
droSim2 4:173796-173999 + CAGGAATAT----AAATACTTTACACAGTCGGAAACGCTTCCT-TATGTCTGTTGCATAATC-------TTAAGCGAATCTAGAATACCCTCTTACTC-------TACGAGTAACGGGTATACAAAT-------------------------------------------------------------------------------------------------------------------------CACGCG-------CCTC-----------------------------------------------------------------------------------------------------------------TCCGATAGAAAAACT------------TG-----------C-CTGAAATTCTCCAACATTTGATTT---------G--------------------------------CTT-ATCAATCAATCAATTAAGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----AAGTAAACAAGAAA-----------------------------------------------------------------------------------------------TCC
droSec2 scaffold_5:5730753-5731025 - CAAGAATAT----ATATACTTTATATAGTCGGAAACGCTTCCT-TCTGCCTGTTACATACTT-------ATCAACGAGTCTAGTATACCCTTTTACTC-------CACGAGTGACGGGTATAAAATG-------------------------------------------------------------------------------------------------------------------------CAAATC-------T------------------------------------------GAC--GA--------TT------T---------------------------------------------------------------------------------------------------------------------------------ATGAATGAATACATATATGTTGCATATTT----GCTAATC---------------AAATTAAATAG------A----------------------------------TACATCT------------------------------------------AAAATTAGTTGG---------------------------------------------GCCTCATTAAATTCTATCTTTTAAAT--------GCCCACTTATTTCTCGCAGTGTGTTCCG------------------------------------------------------------------------------------GCAAT------CT-GACAATAAGCG------------AGCGTACATCT
droYak3 v2_chrUn_1603:23087-23277 + CAAGAATCT----ATATACTTTATATAATCGGAAAGGCTTCCT-TCTGCCTGCTATATACTT-------TTTAACGAATCTTATATACCCTTTTACTC-------TACGAGTACCGGGTATAGTAAATAATATCGATTAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------ACTAACATCTTAAAG---------------------------------------------------------------------------CAA-----------------------------------------------ACAAG-------------------------T--C--------------------AT-----------------TGATTGCAGTATACTTTAACCT------TATTAA-----AACAAAGAAAAA--------------------------------------------------------------------------------------------------A
droEre2 scaffold_4929:14814815-14815048 - CAAGAATAT----ATTGACTTTATAAGGTCGGAAATGTTTCCT-TCTGGCTGTTCCATACTT-------TTCAACGAATCCAGTATACCCTTTTACTC-------TACGAGTAACGGGTATAAAAAG-------------------------------------------------------------------------------------------------------------------------TATATG-------CA--------------------------AGA------------C--ACAT--------TT---------------------------------------------------------TCTGAAAGACATATT------------TAGTTATA----------------------------TT--A-----CTAGTAATAAAAAAGTTCCAATATACTACATATAT----AATATTC---------------TACTTAACTAA------C----------------------------------AGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------CAACAGTCGAATT--GC---ACTG--------------------GCA--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAGAATTT----ATATAGTTTATGGGGTTGGAAATGCTTCAT-TCTGCCTGTTATGTACAA-------TTGCACAAATGCATTA--GCCATTTTCAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------TGA-----------------------------------------------------GAC--GT--------GT------T---TTGGAA-AATCA---TTTT-----------------------------------------------------------------------CGAATTTG-----------GTTTTG--GCA--G--------------------------------GTT-GCCAATC---------------AAACAAATGAT------A----------------------------------TATTTCAA------------------------------------------------------T------TA------------------------------------------------------------------------------------------TCTTTTGATTT------TACCTA----AAGCAACCAACAAA-----------------------------TCCGGGC---------------------CGTT--GC---ACTGGCAACTG-GAGAACAAACGCG---CCSizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
..............................................TGCCTGTTATGTACAA-------TTGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.005000000000000000000000000000031100000000000000000000000000000000
.......................TGGGGTTGGAAATGCTTCAT-TCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.004000001000000000000000000000020100000000000000000000000000000000
.............................................CTGCCTGTTATGTACAA-------TTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000020100000000000000000000000000000000
.............................................................................................TTCAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------TG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003000000000000000000000000000003000000000000000000000000000000000
.............................................CTGCCTGTTATGTACAA-------TTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003000000000000000000000000000012000000000000000000000000000000000
.............................TGGAAATGCTTCAT-TCTGCCTGTTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000001010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................T---TTGGAA-AATCA---TTTT-----------------------------------------------------------------------CGAATTTG-----------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000002000000000000000000000000000000000000000000000000000000000
............................TTGGAAATGCTTCAT-TCTGCCTGTTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000001010000000000000000000000000000000
.......................................TCAT-TCTGCCTGTTATGTACAA-------TTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000020000000000000000000000000000000000
.......................TGGGGTTGGAAATGCTTCAT-TCTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000011000000000000000000000000000000000
.............................................................................................TTCAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000020000000000000000000000000000000000
..................................................................................TTA--GCCATTTTCAA-------TGGGATCAGC--GTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000001010000000000000000000000000000000
.............................TGGAAATGCTTCAT-TCTGCCTGTTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
............................TTGGAAATGCTTCAT-TCTGCCTGTTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTG-GAGAACAAACGC......2011.001000100000000000000000000000000000000000000000000000000000000000
.............................................CTGCCTGTTATGTACAA-------TTGCACAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.............................................CTGCCTGTTATGTACAA-------TTGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------------CGAATTTG-----------GTTTTG--GCA--G--------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................CAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------TGA-----------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................TTTTCAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
......................................TTCAT-TCTGCCTGTTATGTACAA-------TTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GC---ACTGGCAACTG-GAGAACAAACGCG---C.2811.001000000000000000000000000000000100000000000000000000000000000000
..........................................................ACAA-------TTGCACAAATGCATTA--GCCATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.............................TGGAAATGCTTCAT-TCTGCCTGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................TATTAAA-------------------------------------------------------------------------------------------------------------------------TGA-----------------------------------------------------GAC--GT--------GT------T---TTGGAA-AAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
............................TTGGAAATGCTTCAT-TCTGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
....................................GCTTCAT-TCTGCCTGTTATGTACAA-------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
............................................TCTGCCTGTTATGTACAA-------TTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------TGA-----------------------------------------------------GAC--G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.....................................................TATGTACAA-------TTGCACAAATGCATTA--GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................TGCATTA--GCCATTTTCAA-------TGGGATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
............................TTGGAAATGCTTCAT-TCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
.........................................................................ACAAATGCATTA--GCCATTTTCAA-------TGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.............................................CTGCCTGTTATGTACAA-------TTGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................TTCAA-------TGGGATCAGC--GTATATTAAA-------------------------------------------------------------------------------------------------------------------------TGA-----------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000100000000000000000000000
..............................................................................TGCATTA--GCCATTTTCAA-------TGGGATCAGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................C--GT--------GT------T---TTGGAA-AATCA---TTTT-----------------------------------------------------------------------CGAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
..........................................T-TCTGCCTGTTATGTACAA-------TTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..............................................TGCCTGTTATGTACAA-------TTGCACAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
CAAGAATTT----ATATAGTTTATGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
...................................TGCTTCAT-TCTGCCTGTTATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..................................ATGCTTCAT-TCTGCCTGTTATGTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
..............................................TGCCTGTTATGTACAA-------TTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000000010000000000000000000000000000000000
...................TTTATGGGGTTGGAAATGCTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251000000000000000000000000000001000000000000000000000000000000000
...................TTTATGGGGTTGGAAATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.171000000000100000000000000000000000000000000000000000000000000000
...................................TGCTTCAT-TCTGCCTGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.061000000000000000000000000000000010000000000000000000000000000000
droMoj3
CAAGAATAT----ATATACTTTGTGGGGTCTGCCACGCCTCCT-TCTCCCTGTTACATACAT-------TTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAG-------------------------------------------------------------------------------------------------------------------------GAAAAG-------CAGCAGAAGAACAACACGAACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGGCAATA------TGTTAA----TAACAAAAGA-----------------------------AATTATCAATTACCTGGCAGCGACAGCAACAGACAT--TT---TCGG--------------------TCAGTTSizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
..........................................................................................TGATTTCCCATTGAAAATGGGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000020
................................................CCTGTTACATACAT-------TTCAACAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
................TACTTTGTGGGGTCTGCCACGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
droGri2
CAAGAATAT----AAA----TTATGGGGTTGGAAATGCTTCCT-TCTGCATTTTATATAC-------------ACAACTTCATTACACCCATTGTTAA-------TACGTTCA--AAGTATAATAAG-------------------------------------------------------------------------------------------------------------------------TGAACA-------CAT---------------------------------------------TT--------TTT--------------C----TG---TTTT-------------------------------------------------------A-------TACATTTTT-ATTTGT-----------TAGTTGG--TTTA----------------------------------T-TT-----A---------------AAACTAAATAA------A----------------------------------TATTTAA---------------------A---------------------CAGT--------TT---------------------------------------------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------T---TATG--------------------TTTTTASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads
droWil2
CAAGAATAT----ATATACTTTATGGGGTCGGAAACGTCTCCT-TCTGTGCGTTACAAACAT-------CTGACCAATTTTATAATACCCTC-------------TGC-----AAGGGTATAAAAAA-------------------------------------------------------------------------------------------------------------------------GAAATA-------TA--------------------------AGC------------A--ACATGTTGCTCCAGA--------------CG----ATCA--T--------------------------------------------------------T-------AGC--------ATTAT-----------GTT--GTTG--CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACACGAAAAATCCGATCTACCAT--------------------A--------ACAG-------------------GTTCGA------T--------------------------TCAAACCACACGCAACCGCAAGCGAATACGTCA-------------------------------G---AATGGCAGCTG-ATGAGTGGGCGTG---CCSizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
...........................................................CAT-------CTGACCAATTTTATAATACCCTC-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20404000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCAACCGCAAGCGA.........................................................................19200.15303000
..................................ACGTCTCCT-TCTGTGCGTTACAAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200020
........T----ATATACTTTATGGGGTCGGAAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
....AATAT----ATATACTTTATGGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................TCCT-TCTGTGCGTTACAAACAT-------CTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100010
.................................................GCGTTACAAACAT-------CTGACCAATTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.................ACTTTATGGGGTCGGAAACGTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
dp5
CAAGAATAT----ATATACTTTATGGGGTCAGAAACGATTCCT-TCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTC-AT----TTTGAGTATCGGGTATAATAAA-------------------------------------------------------------------------------------------------------------------------AACAGA-------ATGT---------------------------------------TCC--GT--------AC------TTTA-------AATTA---ATTGTGTGTATTGCGTAGCCAGTGCAAATT------------------------------------------------------------------------------------------------------------------------------------------------GAT------T----------------------------------TG---------------------------------------------------------------------------------------------------------TTAT--------------------A--------ATAA-----------------TAATCCGA------T----------------------CTGA----TC-----------TAGAC-------------T---------C---GGCAGC--------------CTAGAAGTTA-TG----------GCCATTSizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
...................................CGATTCCT-TCTGGACGTTACACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23207.30146014600000000
.....................................................................TACCACAAATCTAATATACCCCAATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27202.054104100000000
....................................................................TTACCACAAATCTAATATACCCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.202400000002400
.......................................TCCT-TCTGGACGTTACACACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.50100000000550
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------C---GGCAGC--------------CTAGAAGTTA-TG----------......2020.5010000000010
............................TCAGAAACGATTCCT-TCTGGACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.3570600000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT--------------------A--------ATAA-----------------TAATCCGA------T----------------------CTG...................................................................................................2170.2920000000200
............................TCAGAAACGATTCCT-TCTGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040300000010
......................................TTCCT-TCTGGACGTTACACACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.2040000000400
.......................................................CACACATCCACTTTTACCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2040400000000
.......................................TCCT-TCTGGACGTTACACACATCCACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1530030000000
....................................................TTACACACATCCACTTTTACCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530300000000
..............................AGAAACGATTCCT-TCTGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
....AATAT----ATATACTTTATGGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000020000
....................................GATTCCT-TCTGGACGTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
..............TATACTTTATGGGGTCAGAAACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.0810100000000
.......AT----ATATACTTTATGGGGTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610100000000
................TACTTTATGGGGTCAGAAACGATTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.0610100000000
.................ACTTTATGGGGTCAGAAACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610100000000
.......................TGGGGTCAGAAACGATTCCT-TCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.0610100000000
....................TTATGGGGTCAGAAACGATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000001000
.........................GGGTCAGAAACGATTCCT-TCTGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.0610100000000
....................TTATGGGGTCAGAAACGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.0610000001000
............................TCAGAAACGATTCCT-TCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
....................................................TTACACACATCCACTTTTACCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
............................................................ATCCACTTTTACCACAAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
............................TCAGAAACGATTCCT-TCTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................GTAGCCAGTGCAAATT------------------------------------------------------------------------------------------------------------------------------------------------GAT------...............................................................................................................................................................................................................................................................................................................................................19200.0510000001000
....................................................................TTACCACAAATCTAATATACCCCAATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510001000000
.....................................................................................................................................................................................................................................................................................................................................................................TGCGTAGCCAGTGCAAATT------------------------------------------------------------------------------------------------------------------------------------------------GAT------T----------------------------------TG---------------------------------------------------------------------------------------------------------TT...............................................................................................................................................................................................27200.0510000001000
............................................TCTGGACGTTACACACATCCACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
.............................CAGAAACGATTCCT-TCTGGACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.................................................................................AATATACCCCAATACTC-AT----TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.............................CAGAAACGATTCCT-TCTGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000010
droPer2
CAAGAATAT----ATATGCTTTATGGGGTCGGAAACGCTTCCT-TCTGGACGTTACACAAGTCCACTTTTAGCATAAATCTAATATACCCCTCAACCC-AT----TTTGAGTATCGGGTATAACAAT-------------------------------------------------------------------------------------------------------------------------TATCTG-------TTCCCCAAAAATGTTCTAAATGCGTTTC---AGTGGTTACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCATATTTTTGATAAATTTTAA-TTGTATCCTGAGATCTTTTAA-----------------------------------------------ATTAG-------------------------T--C--------------------AT-----------------------------------------------------------------TA---------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
........T----ATATGCTTTATGGGGTCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.203030000
......TAT----ATATGCTTTATGGGGTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.193030000
...............ATGCTTTATGGGGTCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.183020010
.......AT----ATATGCTTTATGGGGTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.132020000
...GAATAT----ATATGCTTTATGGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.071010000
.AAGAATAT----ATATGCTTTATGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.071010000
........T----ATATGCTTTATGGGGTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071010000
....AATAT----ATATGCTTTATGGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071010000
.......AT----ATATGCTTTATGGGGTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.061010000
..............TATGCTTTATGGGGTCGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.061010000
..............TATGCTTTATGGGGTCGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.061000001
................TGCTTTATGGGGTCGGAAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.061010000
................TGCTTTATGGGGTCGGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061010000
................TGCTTTATGGGGTCGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.061000010
................TGCTTTATGGGGTCGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.061010000
.................GCTTTATGGGGTCGGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.051010000
............................TCGGAAACGCTTCCT-TCTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
............................TCGGAAACGCTTCCT-TCTGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...........................................................................................................TGAGTATCGGGTATAACAAT-------------------------------------------------------------------------------------------------------------------------TC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
..............TATGCTTTATGGGGTCGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droAna3
CAAGAATAT----ATATACTTTATAGGGTCAGAGATGTCTCCC-TCACTGCGTTGCAAACTT-------TTGACCAAAATTATAATACCCTC-------------TGC-----AAGGGCATTAAAAT-------------------------------------------------------------------------------------------------------------------------TAAACT-------TT-----------------------------TACAGTCATGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTAATTTTCAAATGGTTGGA-TGATGTCGACAATTTCCTTCAATATAATAGTAAACAAGTTAACAATAGTCAAGCTGCTATTA--TTTA------------------------------------------CTGACTTCTTAAA--------GTAG-------------------ATCCAT------T--------------------------CCGAAATATGCGTATGT----------------AGA---------------------TGCT--GC---TCTGGCGAATTAGAGCATCATCGCA---CASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
.....................TATAGGGTCAGAGATGTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.05210010164
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTGGA-TGATGTCGACAATTTCCTT................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAAA--------GTAG-------------------ATCCAT------T--------------------------CCGAAA............................................................................................2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAAA--------GTAG-------------------ATCCAT------T--------------------------CCGAAAT...........................................................................................2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAT------T--------------------------CCGAAATATGCGTATGT----------------AGA---------------------TGC......................................2911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGGTTGGA-TGATGTCGACAATT.....................................................................................................................................................................................................................................................................................2711.001010000
........................................................................ACCAAAATTATAATACCCTC-------------TGC-----AAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
....................TTATAGGGTCAGAGATGTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---------------------TGCT--GC---TCTGGCGAATT...................20120.081100000
..................................ATGTCTCCC-TCACTGCGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071100000
.......................................................CAAACTT-------TTGACCAAAATTATAATACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
...................TTTATAGGGTCAGAGATGTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...............................................CTGCGTTGCAAACTT-------TTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
...................TTTATAGGGTCAGAGATGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
................TACTTTATAGGGTCAGAGATGTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.................................................GCGTTGCAAACTT-------TTGACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...............................................................................TTATAATACCCTC-------------TGC-----AAGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
................................AGATGTCTCCC-TCACTGCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droBip1
CAAGATTAT----ATATACCTTATAGGGTCGGAGATGTCTCCT-TCACTGCGTTGCACACTT-------TTGGACAAAATTATAATACCCTC-------------TGC-----AAGGGTATACAAAATTGACTCAGTTAGAAGCAAAATGAATG--AAGATAA--TTTTGGCATTGATT---------------------------------------------------------------------CCTCGGTTTGGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------C-AT-----C---------------GAAA------C------A----------------------------------TATTGCAA------------------------------------------------------T------GTTTTTAGTCCCT------------------------------------------------------------------------------------------------TACAAA----AATCAATAAAAAAA-----------------------------TTCAA---------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droKik1
CAAGAATAT----ATATACTTTATAGGGTCGGAAACGTCTCCT-TCACTGCGTTGCAAACTT-------CTGACTGAAATTATAATACCCA---------------GC-----AAGGGTATAAAAAT---------------------------ACCAAATGGG--------ATTAAATCTATAATTTGTAAAATTTTTTTATTTAAAAACGCATTTTTAACCACTGTGCAGTGGACAAATTAAAAAAAAAACA-------AA--------------------------ACC------------A--AAATTTTGTTT---------------------------------------------------------------------------------------------TA----------------------------GT--T-----CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA----ATACACCAAACAAG----TT-----------TCAAG-------------T---------C---AAT-----------AT---CTTATCAACTG-GA---------------GSizeHit CountTotal NormTotal
No Reads
droFic1
CAAGAATAT----ATATACTTTATGGGGTCTGAGGTGTCTCCT-TCACTGCGTTGCAAACTT-------CTGGCCAAAATTATAATACCCT-TTGCTC-------TGC-----AAGGGTATAAAAAT-------------------------------------------------------------------------------------------------------------------------AAATAT-------ATAAA------------------------------------------------------T------A---ATGGAA----------------------------------------------------------------------------------------------------------------------------AAAAA-------------------------------------------------------TTCTAATGTCGTTGTTTTTAATCCCACGAGCATGATTTTTGGAA-CCTCAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAATAT------T-CTTA----AATCAAGAAAAAAA-------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
CCAGAATGT----ATATACTTTATAGGGTCGGAGATGTCTCCT-TCACTGCGTTGCAAACTT-------CTGACTGAAATTATAAAACCCTC-------------TGC-----AAGGGTATACAATT----------------------------------TTT--------TTTAAA----------------------------------------------------------------------TGT-----------------------------------------------------AAC--TT--------CTGTTACG---------T-AATTT---AT----------------------------------------------------------------------TT-TTAAATTC-----------TTTTTG--ACT--T--------------------------------ATT-A--------------------------------------ATAGTTT----------------------------------------------------T---G---------------------CAGT--------TG---------------------------------------------------------------------AGATTAC---------------------GCTTTCAATTC------TATTAA----AATCAAGAAA-----------------------------CCATATCGTAT---------------------AGCT--GT---CATAGGAACTA-TCAAA----------TAASizeHit CountTotal NormTotal
No Reads
droRho1
CAAGAATAT----ATATACTTTATAGGGTCGGAAACGCTTCCT-TCTAGCTGTTACATACTT-------TTGCACGAATACAATATACCCTTTTACTC-------TACGAGTAACGGGTATAATGAT---------------------------TCAAATTAAGAGTTTGATATA-------------------------------------------------------------------------GAACAGATTAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------AATTTAAAAAT------G----------------------------------TAATGAGA------------------------------------------------------TTGTCATTT--TTTATTGTGTATAAA----------------------------------------------------------------------------------------------------GTAC----AAAGAA-----------------------------TTCAA----------------GCAAG------AA-AACGAGTGGCGAAGG-AAGAAGGAAC------GCSizeHit CountTotal NormTotal
No Reads
droBia1
CAAGAATAT----ATATACTTTATGGGGACGGAAACGTCTCTTATGACTGCGTTCCAAGCTT-------CTGACTGAAATCATTATACCCTC-------------TGC-----AAGGGTACAGTATT-------------------------------------------------------------------------------------------------------------------------TATATGTTTGGTGTTTT------------------------------------------------------------------TTAACA-AATAA---CCT--------------------------------------------------------T-------AGC----TTGTA----------------------------------------------------------------------------AATGACATTT-------------------------------------------------------------------------------TTAA-----------------------------------------------ATTAG-------------------------T--T--------------------AAAAATTTC---------------------AATTTAAATTT------TATCAA----AATCAGACGA-----------------------------CTATATCATAT---------------------AGCT--GT---AATAGTA---------------------ACSizeHit CountTotal NormTotal
No Reads
droTak1
GAAGAATAT----ATATACTTTATAGGGTTGGAAATGCTTCCT-TCTAGCTGTTACATACTT-------TTGCACGAATACAATATACCCTTTTACAC-------AGCGATCG-----CAA-----G-------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------------------------------------------------GAGTTACTTTTTTAAAAAAATTGACAAATAAGTTTTATTTTT--------CCATTTTT-----------ATT----------------AAAAATG--------------------TTC-----------------------------------ACATATCACTGT-------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------TGCTTCAATTT------TTATTATAAAAATCAACAAATAAG---------------------------------AGT---------------------T------A---TTTG--------------------TCAACTSizeHit CountTotal NormTotal
No Reads
droEug1
CAAGAATAT----ATATACTTTATAGGGTCGCAAAAGCTTCCT-TCTATCTGTTACATACTT-------TTCAACGAATCTAGTATACCCTTTTACTC-------TACGAGTAACGGGTATAATAAA-------------------------------------------------------------------------------------------------------------------------GAAAAG-------CCTCC-----------------------------------------------------TAA--------------CG----AATA--A--------------------------------------------------------A-------AGCTTGGTG-GTATTT-----------GTGAAGA--ATTG----------------------------------T-TT-----C---------------AAAATATATAA------A---------------------------TTTTATCT-TACTAAGTTT--------------------------------------------------T------GTTTTGAGCCTTT------------------------------------------------------------------------------------------------TACC--------T---CTAAAAAT-----------------------------TTTAGAC---------------------C-----GT---CATTG-------------------G---CASizeHit CountTotal NormTotal
No Reads
dm3
CAAGAATATACATATATACTTTAAATAGTCGGAAACGCTTCCT-TCTGTCTGTTACATACTT-------TTCAACGAATCTAGTATACCCATTTACTC-------TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAACT-------ATGA---------------------------------------T------------------AACGTTTT-------TATTA---TTTT-----------------------------------------------------------------------CGATAATT-----------GTCTTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------T---A------------------------------------------------------------------------------------------------------------------------------------TAGTTGAAATTCATTATTATCAA----AAACAACGAAGAA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
.............................................................T-------TTCAACGAATCTAGTATACCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25216.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002040120140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TC-------TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001000000000000000000000000000000000000000010000000000000100010000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................TT-------TTCAACGAATCTAGTATACCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26213.50270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031409370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TC-------TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2918.0080000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TT-------TTCAACGAATCTAGTATACCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2527.00140000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001100000000000000000000000000000000000000000000000000000000000000000303040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................T-------TTCAACGAATCTAGTATACCCATTTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2817.0070000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100010110010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TA---TTTT-----------------------------------------------------------------------CGATAATT-----------GTCTTG--GCT--G--------------------------------T.........................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TC-------TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................AGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTAAATAGTCGGAAACGCTTCCT-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2524.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000003000000000000000000000000000000000000000000000000000000000001100001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TT-------TATTA---TTTT-----------------------------------------------------------------------CGATAATT-----------GTCTTG--GC..............................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................TTTAAATAGTCGGAAACGCTTCCT-TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2624.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000100000000000000000000000000000000000000000000110000010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................TTAAATAGTCGGAAACGCTTCCT-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2423.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000200000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAACT-------ATGA---------------------------------------T------------------AACGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTAAATAGTCGGAAACGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1923.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAACT-------ATGA---------------------------------------T------------------AACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................CACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------GAAACT-------ATGA---------------------------------------T------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------....................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TATATACTTTAAATAGTCGGAAACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------GTCTTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------....................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................T-------TTCAACGAATCTAGTATACCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.5050000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTAAATAGTCGGAAACGCTTCCT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAATT-----------GTCTTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGA..........................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATAGTCGGAAACGCTTCCT-TCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------GTCTTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------....................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------T---A------------------------------------------------------------------------------------------------------------------------------------TAGT.......................................................................................................................................2712.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................T-------TTCAACGAATCTAGTATACCCATTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TT-------TTCAACGAATCTAGTATACCCATTTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TACTC-------TACGAGTCACGGGTATAACAAC-------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................T-------TTCAACGAATCTAGTATACCCATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTTACTC-------TACGAGTCACGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TTACTC-------TACGAGTCACGGGTATAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--GCT--G--------------------------------TTT-----------------------------------CCATGAAAGATT----------------------------------------------------T---A------------------------------------------------------------------------------------------------------------------------------------TAG........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CAGGAATAT----AAATACTTTACACAGTCGGAAACGCTTCCT-TATGTCTGTTGCATAATC-------TTAAGCGAATCTAGAATACCCTCTTACTC-------TACGAGTAACGGGTATACAAAT-------------------------------------------------------------------------------------------------------------------------CACGCG-------CCTC-----------------------------------------------------------------------------------------------------------------TCCGATAGAAAAACT------------TG-----------C-CTGAAATTCTCCAACATTTGATTT---------G--------------------------------CTT-ATCAATCAATCAATTAAGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----AAGTAAACAAGAAA-----------------------------------------------------------------------------------------------TCCSizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
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................TACTTTACACAGTCGGAAACGCTTCCT-TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00200000000200000000
................TACTTTACACAGTCGGAAACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000000000
.....................................................................................TACCCTCTTACTC-------TACGAGTAACGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2661.50900000002331000000
........T----AAATACTTTACACAGTCGGAAACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
......................................................................................................................TATACAAAT-------------------------------------------------------------------------------------------------------------------------CACGCG-------CCTC-----------------------------------------------------------------------------------------------------------------TCCGATAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
.....................TACACAGTCGGAAACGCTTCCT-TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
......TAT----AAATACTTTACACAGTCGGAAACGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................TCCGATAGAAAAACT------------TG-----------C-CTGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------C-CTGAAATTCTCCAACATTTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................TCCT-TATGTCTGTTGCATAATC-------TTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
................TACTTTACACAGTCGGAAACGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATCAATCAATCAATTAAGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----AAGTA...........................................................................................................2911.00100000000100000000
....................................................................................ATACCCTCTTACTC-------TACGAGTAACGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.17100000000001000000
.............................................................................................TACTC-------TACGAGTAACGGGTATACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000000100000000
................................................................................................TC-------TACGAGTAACGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000000002000000
................................................................................................TC-------TACGAGTAACGGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200000000002000000
..........................................................................................TCTTACTC-------TACGAGTAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.07100000000001000000
...........................................................................................................CGAGTAACGGGTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.............................................................................................TACTC-------TACGAGTAACGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000010000000000
droSec2
CAAGAATAT----ATATACTTTATATAGTCGGAAACGCTTCCT-TCTGCCTGTTACATACTT-------ATCAACGAGTCTAGTATACCCTTTTACTC-------CACGAGTGACGGGTATAAAATG-------------------------------------------------------------------------------------------------------------------------CAAATC-------T------------------------------------------GAC--GA--------TT------T---------------------------------------------------------------------------------------------------------------------------------ATGAATGAATACATATATGTTGCATATTT----GCTAATC---------------AAATTAAATAG------A----------------------------------TACATCT------------------------------------------AAAATTAGTTGG---------------------------------------------GCCTCATTAAATTCTATCTTTTAAAT--------GCCCACTTATTTCTCGCAGTGTGTTCCG------------------------------------------------------------------------------------GCAAT------CT-GACAATAAGCG------------AGCGTACATCTSizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
................................................................................TAGTATACCCTTTTACTC-------CACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2011000
.....ATAT----ATATACTTTATATAGTCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020020
droYak3
CAAGAATCT----ATATACTTTATATAATCGGAAAGGCTTCCT-TCTGCCTGCTATATACTT-------TTTAACGAATCTTATATACCCTTTTACTC-------TACGAGTACCGGGTATAGTAAATAATATCGATTAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------ACTAACATCTTAAAG---------------------------------------------------------------------------CAA-----------------------------------------------ACAAG-------------------------T--C--------------------AT-----------------TGATTGCAGTATACTTTAACCT------TATTAA-----AACAAAGAAAAA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
..............................................................................................ACTC-------TACGAGTACCGGGTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.06100000100000
droEre2
CAAGAATAT----ATTGACTTTATAAGGTCGGAAATGTTTCCT-TCTGGCTGTTCCATACTT-------TTCAACGAATCCAGTATACCCTTTTACTC-------TACGAGTAACGGGTATAAAAAG-------------------------------------------------------------------------------------------------------------------------TATATG-------CA--------------------------AGA------------C--ACAT--------TT---------------------------------------------------------TCTGAAAGACATATT------------TAGTTATA----------------------------TT--A-----CTAGTAATAAAAAAGTTCCAATATACTACATATAT----AATATTC---------------TACTTAACTAA------C----------------------------------AGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------CAACAGTCGAATT--GC---ACTG--------------------GCA--ASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
.....................................................................................TACCCTTTTACTC-------TACGAGTAACGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000000

Generated: 05/17/2015 at 05:11 AM