ID:

dvi_997

 Coordinate:

scaffold_12472:180669-180940 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-59.2 -59.2 -59.2

Flybase annnotation

CDS [Dvir\GJ18515-cds]; exon [dvir_GLEANR_3315:7]; exon [dvir_GLEANR_3315:6]; CDS [Dvir\GJ18515-cds]; intron [Dvir\GJ18515-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
T-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCTTTTTGGGCTTGTGCAGCGAGGTGAATCTCTATTGTGTGAATGGATCCCAAACCTTGCGGATCCATTCGTGAGCGTGCTAATTAATTGCGTTTGTTGTTTGTTGCCTCCGCACCAGTCGCAAAAAAAAACAAAACAAAACAATATAAAATAGACAAAAAACAAACAGATTTTAAACAAGTATTTAAATTGAAAGCGCCAACGCTTTGTGTGGTGCAGTTTTGATTGGTTTTCACTAATTTCTTATATTTATATAAATTATATTTAGAATCCCATCATCGACGGCGAAGCGACAACGCTGAACAACAGCAACAACAA
**************************************************(((((.((((((((((.((((...(((((((............((((((((((((((...))).))))))))))).((((((...........))))))........))))))).)))).)))).)))))).........((((((........................(((..((((((......)))))))))...((((((.(((...))))))))).))))))((((((....))))))..))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 M047
female body
 SRR060687
9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 V047
embryo
 V053
head
 SRR060677
Argx9_ovaries_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
.............................................................................................................CTTGCGATTCCATTGGTGAGC.................................................................................................................................................................................................................................................. 21 3 4 6.25 25 9 1 3 2 0 3 1 0 0 2 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
.............................................................................................................CTTGCGATTCCATTGGTGAG................................................................................................................................................................................................................................................... 20 3 4 2.50 10 3 0 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CTTGCGATTCCATTGGTGA.................................................................................................................................................................................................................................................... 19 3 20 1.45 29 0 2 2 1 0 2 1 0 1 0 4 0 0 0 0 3 1 1 0 4 4 0 2 0 1 0
...........................ATTTCAGAGGTGATAGCAAG..................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GGGCATCGCAAGTGGCATTTCA................................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AATCCCATCATCGACGGC................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CATCATCGACGGCGAAGCGAC........................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TAGAATCCCAAGATCGACGGCGAAG............................ 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAGCTTTTTGGGCTTGTGCA............................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ATCGCAAGTGGCATTTCAGAGGTGAT........................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGGCATTTCAGAGGTGATAGTTG...................................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GCTTTGTGTGTTGCCGTTTT............................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................TAGCATCTCAGAGGTGAT........................................................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TTTTGATTGTTTCTCACCAATTT............................................................................ 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................TCGACGGAGAACTGACAACGC................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AGAATCCCATCATCGTCGCCA............................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CCTTGCGATTCCATTGGTGA.................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ATTAAGAGCGCCAACGCTT............................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CGCCAGTGGCATTTCCGAG................................................................................................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTACTAGTTAATTGCGTT................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GCATTCTGTGGTGCAGTTTTC.............................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GATAGACAAAAAACAACCAG..................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AATCCCATCATCGTCGCC................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................AACGCCTTGTGTGGTGCGGT.................................................................................................. 20 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GAATCCCATCCTCGGCGCCG............................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TTTCGAATCCCATCATCGT.................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CTTGCGATTCCATTTGTGAGC.................................................................................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGTGCTTTTTGGGCTAG................................................................................................................................................................................................................................................................................................................ 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................CGCCTTGTGCGGTGCGGTTT................................................................................................ 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TATGAAATAGAGAAGAAACAA......................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................TAGAATTTAAAGAAGTATTTAA.................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCGCGAGTTCCACGTAGCGTTCACCGTAAAGTCTCCACTATCGTTCGTCCACTCGAAAAACCCGAACACGTCGCTCCACTTAGAGATAACACACTTACCTAGGGTTTGGAACGCCTAGGTAAGCACTCGCACGATTAATTAACGCAAACAACAAACAACGGAGGCGTGGTCAGCGTTTTTTTTTGTTTTGTTTTGTTATATTTTATCTGTTTTTTGTTTGTCTAAAATTTGTTCATAAATTTAACTTTCGCGGTTGCGAAACACACCACGTCAAAACTAACCAAAAGTGATTAAAGAATATAAATATATTTAATATAAATCTTAGGGTAGTAGCTGCCGCTTCGCTGTTGCGACTTGTTGTCGTTGTTGTT
**************************************************(((((.((((((((((.((((...(((((((............((((((((((((((...))).))))))))))).((((((...........))))))........))))))).)))).)))).)))))).........((((((........................(((..((((((......)))))))))...((((((.(((...))))))))).))))))((((((....))))))..))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M027
male body		 SRR060676
9xArg_ovaries_total
 SRR060680
 9xArg_testes_total
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 M047
female body
....................................................................................................................TAGGTAAGTACGCGCATGATTAA......................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................CTAGGTAAGTACGCGCATGATT........................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCTGGTTTGTCTAAAATTGGT........................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................TTTTTTGTTTTGTTTTGTTAT............................................................................................................................................................................ 21 0 3 0.33 1 0 0 1 0 0 0 0 0
...................................................................................................................TTAGGTAAGCACTCGCAG............................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTTAAAGCTTAGGGTAGGAGC..................................... 21 3 5 0.20 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................AAAAAGCTTAGGGTAGGAGC..................................... 20 3 10 0.20 2 0 0 0 0 0 0 2 0
.....................................................................................................................AGGTAAGTACGCGCAGGATTA.......................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................GTGGTCAGCGTTTTTTTTGT.......................................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 1
...................................GCACTATCGGTCGTCCAGT.............................................................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12472:180619-180990 - dvi_997 TAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGC-TTTTT----G---GGCTTGTGCAG-----------------------------CGAGGTGAAT-C--TCTATTGTGTGAATGGATCCCAAA---CCT--TGCGGATCCATTCGTGAGCG-----------------------------------------------------TGCT-A-----------------------ATTA-----------------------------------------------------ATTGCGTTTGTTG--TTTGTTGCCTCCGCACCAGTCGCAAAAAAAA---------------ACAA-AACA--AAACAATATA-----AAATAGAC-----------AAAAAACAAACAGATTTTAAACAAGTATTTAAATTGAAAGCGCCAACGCTTTGTGTGGTGCAGTT-T---TGA-----------------T--TGGTTTTCACTAAT------------TTCT--TA-----------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATA--TAAAT----T--ATATTTAGAATCCCATCATCGACGGCGAA------GCGACAACGCTGAACAACAGCAACAACAA
droMoj3 scaffold_6359:3377801-3378156 - TTGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGC-TTTTT----G---GGCTTGTGCAG-----------------------------CGAGGTGAAATC--T-----GTGTGGATGGATCCCACGATTCCGTGTGCGGATCC----------------------------------------------------ATTCGTGT---GCGTCAA-----------------------ATTA-----------------------------------------------------ATAACGTTTGTTC--TTTGTTGCCTCCGCACCAGTCGCAAAAAATAA--------------ACAACAACTA---ATAAAAAAAACTCAAATAGAATTAGGGAAAAAAAAAAACACACAC-------ACAATTT----AATAGAACC------CGTTTCGAGTGGTGCAG----------------------------------------------------------------------------------------------------------------TCTTACTAAT-------------------------------------TC----------------------CCT-----------------------------TT-AA------A--TT-------TGTACATTTAGAATCTCATCATCGACGGCGAA------GCGACAACGCTGAACAACAGCAGCAGCAA
droGri2 scaffold_14853:6838355-6838749 + TAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGC-TTTTT----G---GGCTTGTGCAG-----------------------------CGAGGTGGAATC--T-------------------------------------------------CTA----------------------------------------------------------------------------------------------TTT---------CTGATGAATGATGCTTCCCACACCCGTGGAATATTACGTTTGTTCT-ATTGTTGCCTCCGCACCAGTCGCAAAAAAAAATACATAGTACAAAGACAACAACAATATACAAAAAA-----AAAAAGAA-----------AAAAAAAAAAAAGAATTACAACAAATTG-----TAGAATT---TGT---T---------GCATAGCC---TGAATG---GTTTACTAATTT--TTGATTTTCCTTTT--------------CTCCTGCTTTCTATAAC-------------------GAA--A-ACCC------TTCCTT----C-------------------------------------CC----------------------CCC-----------------------------CC-AA------A------A----CAT-CATTTAGATCCCAATCAACGACGGCGAA------GCGACAACGCTGAACAACAGCAGCAACAA
droWil2 scf2_1100000004515:3926044-3926257 - TTTGTTT--GTGTGCTTTATACATG------------T--------GTATGTGAGTGTGTGTGTGTTCGCAATCTGTAAAAAAAAACAACACACCACAGCAAAAGCAAAAAAAGAAAAACAA--G-------------------------------------------------AGGAAAAATACAACAAAATTTATCAACAAAT--A------AAA-----------------------------------------------GCTATTTGTG---------TTAATGT-TTATAA-------------------------------------ATTGCCACAAGTTAGTTGGTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GTTAACAGCAAAATAAAAGTGACAA-----------------AACAA
dp5 XL_group1e:3097200-3097501 - dps_2652 TTGCACTCAAAGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----C---GGCTTGTGCAG-----------------------------CGAGGAGAACGA--A-------------------------------------------------AAA------------GAACCAACCAAAGCGT--G------GAT-----------------------------------------------G----A--TG---------CTGATGA-TGATGAT----------------------G---------AGAGATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------CA-ATC-AACATCTC----------------TAT---C---------TCTTTACTTGATCAAT----CTATATTAATCTGTTTGTTTCTTCTCTC------------CTCT--CTCCTTCTC---------------CTCCTCC-T---------C------GTCCTCCT--T------------------------------------CCC-----------------------T------------------------ACTCTTCCTAT------C--CGA-----------ATGTAGAACCAC---ATCGACAGCGAA------ACGACGA----------------------
droPer2 scaffold_17:31302-31459 - TTGCACTCAAAGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----C---GGCTTGTGCAG-----------------------------CGAGGAGAACGA--A-------------------------------------------------AAA------------GAACCAACCAAAGCGT--G------GAT-----------------------------------------------G----A--TG---------CTGATGA-TGATGAT----------------------G---------AGAGATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13335:1483162-1483334 + TAGCACTCAAGGTGCACCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----GTGCAGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGAGGACGTGCTCTAGATCT-------------A------GA------TC----------------------------------------------TGTGCTGATGATATTGATGA-TAGTGAT----------------------G-------------TTGCCTCCGCACCAGTCGCAAAAA-CA------------------------------------------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395441:81509-81669 + TAGCACTCAAGGTGCACCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----GTGCAGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGA-GG----------------------------------------------------------------A--------------CTCTAG----ATGTG---------CTGATGA-TATTGAT----------------------G---ATAGTGA-TGTTGCCTCCGCACCAGTCGCAAAAA-CA------------------------------------------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302586:109653-110034 - TTGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----C---GGCTTGTGCAG-----------------------------CGAGGAGGAGGA-----------------------------------------------------GAAGGACGAT-----G---------GGCGA--C------CA--------TGTCGCGCCACCCACTAACAATCTAACTAAACTAATTAATG----ATG--------ATGCTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------C-----G---------TCATTGCAAATGGAAC----TTGAACTAATCT--ATGTTTTATCTTTTCTTTTTACCTTCCTCT--CTCTTT----ACCCCGTATCCCCCCTCCCCCCAC--------C------GTCCTGGAATT-------------------------------------CC-----------------------TG-------------------C--GATTCTTGC---------------------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
droFic1 scf7180000454077:2356963-2357332 - TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G---------A-TGCTGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAC----AAGTACTAATCT--CTGTTCTCTCTTTC-------------TCTTCTCCCCACTCA---------------A------TCA--A-TCCC------CTCCTGCAATT-------------------------------------CC----------------------C-ACGTCCACCTCCACGTCCATG---------GC-AT------GTGTT-------AATCCTTGCAGAATCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
droEle1 scf7180000491023:1571016-1571414 - TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTCGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--GCGTCATGAGCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GTTATC-AACATCTC----------------------G---------TCATTGCCAACTGAAT----TTGTACTAATCTATATGTTTTCTCTTTT------------TTCT--TTCCC--------------------------------------------------------CTCAAAAATTCCACGATCCACACAATATCCACCACTCCTGCTCCAATATCCATCCATCCTTCG-------------------GCAAATCCTTGC-AT------T--TGAAT----CATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
droRho1 scf7180000779966:65139-65489 - TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCAACAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTAATCT--ATGTTTTCTTTTT--------------TCT--CCCCCA-------------------ACCCCACACA--A-ATCCTGCTGAATCCTGCTATC-------------------------------------CC----------------------CCG-----------------------------GC-AT------A--TT-------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
droBia1 scf7180000302075:549997-550182 - TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACGATGG-------------------------------------------------CGACGGACGAT---------------GGCGATGG------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTAATG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415351:92852-93181 + TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGATGA--G------CGAG-----------------CGAG------------------CGACGGACG---------------------------------TCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G---------A-AGATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTG----------------------G---------TCATTGTAAACTGAATTGTATTGTACTAATCT--TTGTTTTCTCTTC--------------TCT--TTCCTT-----------------------------------------------------TCCTCA-------------------------------------------------------------------------------------------AT------A--TCCTTGCGCAATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
droEug1 scf7180000409110:218783-219136 - TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTAATCT--TTGTTTTCTCTTTT--------------CT----CCCACCA----------------ACTCC--CCAAAATTTCCCGCTGTATCCTGCTACC-------------------------------------CC----------------------CCG-----------------------------GC-AT------AC-TT-------AATCCTTACAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
dm3 chrX:16328856-16329037 + TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGTGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:15438384-15438565 + TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:148605-148786 + TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:10448282-10448633 + dya_1381 TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTAATCT--TTATTTTCTCTTTT------------TTCT--TCCCCACCA----------------A---C--CCA--A-TTCCCGCTGTATCCTGCTATT-------------------------------------TC----------------------CCG-------------------G---------GC-AT------A--TT-------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACAC
droEre2 scaffold_4690:10768423-10768774 - TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTGATCT--TTGTTTTCTCTCTT------------TTCT--TCCCCACCA-------------------CC--CCA--A-ATCCCGCTGTGTCCTGCTATT-------------------------------------CC----------------------CCG-------------------G---------GC-AT------A--TT-------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACATTTGACCAACAACAATCATAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGC-TTTTT----G---GGCTTGTGCAG-----------------------------CGAGGTGAAT-C--TCTATTGTGTGAATGGATCCCAAA---CCT--TGCGGATCCATTCGTGAGCG-----------------------------------------------------TGCT-A-----------------------ATTA-----------------------------------------------------ATTGCGTTTGTTG--TTTGTTGCCTCCGCACCAGTCGCAAAAAAAA---------------ACAA-AACA--AAACAATATA-----AAATAGAC-----------AAAAAACAAACAGATTTTAAACAAGTATTTAAATTGAAAGCGCCAACGCTTTGTGTGGTGCAGTT-T---TGA-----------------T--TGGTTTTCACTAAT------------TTCT--TA-----------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATA--TAAAT----T--ATATTTAGAATCCCATCATCGACGGCGAA------GCGACAACGCTGAACAACAGCAACAACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................ATTTCAGAGGTGATAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCATCATCGACGGC......................................1811.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGACGGCGAA------GCGAC........................2111.001000000000000000000000000000000000000000000000000000000000000001
...................................................TGAGC-TTTTT----G---GGCTTGTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............ATCGCAAGTGGCATTTCAGAGGTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000001000000000000000000000000000000000000000000000000000
.......................TGGCATTTCAGAGGTGATAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000000000000000100000000000000000000000000000000000
droMoj3
TTGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGC-TTTTT----G---GGCTTGTGCAG-----------------------------CGAGGTGAAATC--T-----GTGTGGATGGATCCCACGATTCCGTGTGCGGATCC----------------------------------------------------ATTCGTGT---GCGTCAA-----------------------ATTA-----------------------------------------------------ATAACGTTTGTTC--TTTGTTGCCTCCGCACCAGTCGCAAAAAATAA--------------ACAACAACTA---ATAAAAAAAACTCAAATAGAATTAGGGAAAAAAAAAAACACACAC-------ACAATTT----AATAGAACC------CGTTTCGAGTGGTGCAG----------------------------------------------------------------------------------------------------------------TCTTACTAAT-------------------------------------TC----------------------CCT-----------------------------TT-AA------A--TT-------TGTACATTTAGAATCTCATCATCGACGGCGAA------GCGACAACGCTGAACAACAGCAGCAGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCTGAACAACAGCAGC.....2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCATCATCGACGGCGAA------GCG..........................2511.001100000
droGri2
TAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGC-TTTTT----G---GGCTTGTGCAG-----------------------------CGAGGTGGAATC--T-------------------------------------------------CTA----------------------------------------------------------------------------------------------TTT---------CTGATGAATGATGCTTCCCACACCCGTGGAATATTACGTTTGTTCT-ATTGTTGCCTCCGCACCAGTCGCAAAAAAAAATACATAGTACAAAGACAACAACAATATACAAAAAA-----AAAAAGAA-----------AAAAAAAAAAAAGAATTACAACAAATTG-----TAGAATT---TGT---T---------GCATAGCC---TGAATG---GTTTACTAATTT--TTGATTTTCCTTTT--------------CTCCTGCTTTCTATAAC-------------------GAA--A-ACCC------TTCCTT----C-------------------------------------CC----------------------CCC-----------------------------CC-AA------A------A----CAT-CATTTAGATCCCAATCAACGACGGCGAA------GCGACAACGCTGAACAACAGCAGCAACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTGTTT--GTGTGCTTTATACATG------------T--------GTATGTGAGTGTGTGTGTGTTCGCAATCTGTAAAAAAAAACAACACACCACAGCAAAAGCAAAAAAAGAAAAACAA--G-------------------------------------------------AGGAAAAATACAACAAAATTTATCAACAAAT--A------AAA-----------------------------------------------GCTATTTGTG---------TTAATGT-TTATAA-------------------------------------ATTGCCACAAGTTAGTTGGTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GTTAACAGCAAAATAAAAGTGACAA-----------------AACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................TATACATG------------T--------GTATGTGAGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200110
..........................................................................................................................................................................................................AAT--A------AAA-----------------------------------------------GCTATTTGTG---------TTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................ATACATG------------T--------GTATGTGAGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
....................................................................................................................AAACAA--G-------------------------------------------------AGGAAAAATACAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................ATACATG------------T--------GTATGTGAGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......................TG------------T--------GTATGTGAGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
dp5
TTGCACTCAAAGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----C---GGCTTGTGCAG-----------------------------CGAGGAGAACGA--A-------------------------------------------------AAA------------GAACCAACCAAAGCGT--G------GAT-----------------------------------------------G----A--TG---------CTGATGA-TGATGAT----------------------G---------AGAGATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------CA-ATC-AACATCTC----------------TAT---C---------TCTTTACTTGATCAAT----CTATATTAATCTGTTTGTTTCTTCTCTC------------CTCT--CTCCTTCTC---------------CTCCTCC-T---------C------GTCCTCCT--T------------------------------------CCC-----------------------T------------------------ACTCTTCCTAT------C--CGA-----------ATGTAGAACCAC---ATCGACAGCGAA------ACGACGA----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................TCAGAGGTGATAGCAAGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......TCAAAGTGCATCGCAAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--CGA-----------ATGTAGAACCAC---ATCGA..........................................2111.0010000000001
droPer2
TTGCACTCAAAGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----C---GGCTTGTGCAG-----------------------------CGAGGAGAACGA--A-------------------------------------------------AAA------------GAACCAACCAAAGCGT--G------GAT-----------------------------------------------G----A--TG---------CTGATGA-TGATGAT----------------------G---------AGAGATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................GCGTTTTT----C---GGCTTGTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................GAT-----------------------------------------------G----A--TG---------CTGATGA-TGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061010000
droAna3
TAGCACTCAAGGTGCACCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----GTGCAGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGAGGACGTGCTCTAGATCT-------------A------GA------TC----------------------------------------------TGTGCTGATGATATTGATGA-TAGTGAT----------------------G-------------TTGCCTCCGCACCAGTCGCAAAAA-CA------------------------------------------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............GCACCGCAAGTGGCATTTCAGAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................AGTGGCATTTCAGAGGTGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................AGTGGCATTTCAGAGGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
TAGCACTCAAGGTGCACCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----GTGCAGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGA-GG----------------------------------------------------------------A--------------CTCTAG----ATGTG---------CTGATGA-TATTGAT----------------------G---ATAGTGA-TGTTGCCTCCGCACCAGTCGCAAAAA-CA------------------------------------------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----C---GGCTTGTGCAG-----------------------------CGAGGAGGAGGA-----------------------------------------------------GAAGGACGAT-----G---------GGCGA--C------CA--------TGTCGCGCCACCCACTAACAATCTAACTAAACTAATTAATG----ATG--------ATGCTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------C-----G---------TCATTGCAAATGGAAC----TTGAACTAATCT--ATGTTTTATCTTTTCTTTTTACCTTCCTCT--CTCTTT----ACCCCGTATCCCCCCTCCCCCCAC--------C------GTCCTGGAATT-------------------------------------CC-----------------------TG-------------------C--GATTCTTGC---------------------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotal
No Reads
droFic1
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G---------A-TGCTGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAC----AAGTACTAATCT--CTGTTCTCTCTTTC-------------TCTTCTCCCCACTCA---------------A------TCA--A-TCCC------CTCCTGCAATT-------------------------------------CC----------------------C-ACGTCCACCTCCACGTCCATG---------GC-AT------GTGTT-------AATCCTTGCAGAATCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotal
No Reads
droEle1
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTCGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--GCGTCATGAGCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GTTATC-AACATCTC----------------------G---------TCATTGCCAACTGAAT----TTGTACTAATCTATATGTTTTCTCTTTT------------TTCT--TTCCC--------------------------------------------------------CTCAAAAATTCCACGATCCACACAATATCCACCACTCCTGCTCCAATATCCATCCATCCTTCG-------------------GCAAATCCTTGC-AT------T--TGAAT----CATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotal
No Reads
droRho1
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACGA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCAACAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTAATCT--ATGTTTTCTTTTT--------------TCT--CCCCCA-------------------ACCCCACACA--A-ATCCTGCTGAATCCTGCTATC-------------------------------------CC----------------------CCG-----------------------------GC-AT------A--TT-------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotal
No Reads
droBia1
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACGATGG-------------------------------------------------CGACGGACGAT---------------GGCGATGG------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTAATG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGATGA--G------CGAG-----------------CGAG------------------CGACGGACG---------------------------------TCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G---------A-AGATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTG----------------------G---------TCATTGTAAACTGAATTGTATTGTACTAATCT--TTGTTTTCTCTTC--------------TCT--TTCCTT-----------------------------------------------------TCCTCA-------------------------------------------------------------------------------------------AT------A--TCCTTGCGCAATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotal
No Reads
droEug1
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTAATCT--TTGTTTTCTCTTTT--------------CT----CCCACCA----------------ACTCC--CCAAAATTTCCCGCTGTATCCTGCTACC-------------------------------------CC----------------------CCG-----------------------------GC-AT------AC-TT-------AATCCTTACAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotal
No Reads
dm3
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGTGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................22112.00120000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000100000000001010000100100000101000000000000000000000000000000000000000000000000000010000000000000000
........AAGGTGCATCGCAAGTGGCATTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000305000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAGAGGTGATAGCAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000002001000000000000010000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000010000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2066.33380000000000000000000000000000000000000300000000000000000000000000000000000000011100000000000000001000000000000000000000000000000000000000000000000010210006100000000000000000000000000000000000000000000000000000000002100010022000000000000000000000100011000000000000000000000000000000000000000000402000000210000000000000000000000000
.................CGCAAGTGGCATTTCAGAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AT----------------------G-------------ATGCCTCCGCACCAGTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TG---------CTGATGA-TGATGAT----------------------G-------------ATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................AAGTGGCATTTCAGAGGTGATAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGTG---------CTGATGA-TGATGAT----------------------G-------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2022.5050000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGGTGCATCGCAAGTGGCATTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................T----G---GGCTTGTGCAG-----------------------------CGAGGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000
................TCGCAAGTGGCATTTCAGAGGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TG---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2141.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000110000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGTGCATCGCAAGTGGCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCACTCAAGGTGCATCGCAAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................TTTTG----ATGTG---------CTGATGA-TGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................G----ATGTG---------CTGATGA-TGATGAT----------------------G-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGTGCATCGCAAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................GCAGGTGAGCGTTTTT----G---GGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......TCAAGGTGCATCGCAAGTGGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................GTGGCATTTCAGAGGTGATAGCAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................CAGAGGTGATAGCAAGCAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TG----ATGTG---------CTGATGA-TGATGAT----------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................TTTT----G---GGCTTGTGCAG-----------------------------CGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGGTGCATCGCAAGTGGCATTTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAGTGGCATTTCAGAGGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AAGCAGGTGAGCGTTTTT----G---GGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................TTT----G---GGCTTGTGCAG-----------------------------CGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................AAGTGGCATTTCAGAGGTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AGAGGTGATAGCAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....CTCAAGGTGCATCGCAAGTGGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................CGTTTTT----G---GGCTTGTGCAG-----------------------------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........AGGTGCATCGCAAGTGGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGAGCGTTTTT----G---GGCTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................ATTTCAGAGGTGATAGCAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................TGTG---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCATTTCAGAGGTGATAGCAAGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................GTGGCATTTCAGAGGTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...CACTCAAGGTGCATCGCAAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................G-------------ATGCCTCCGCACCAGTCGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................GCAAGTGGCATTTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCGTTTTT----G---GGCTTGTGCAG-----------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGCGTTTTT----G---GGCTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGTGCATCGCAAGTGGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGCACTCAAGGTGCATCGCAAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGTGGCATTTCAGAGGTGATAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................ACCAAC----AA--------------CTTTTG----ATGTG---------CTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGCAAGTGGCATTTCAGAGGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................CGCAAGTGGCATTTCAGAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................CTGATGA-TGATGAT----------------------G-------------ATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGTGGCATTTCAGAGGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040080000000000000100001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TG---------CTGATGA-TGATGAT----------------------G-------------ATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030040000000000000400002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000400000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TG---------CTGATGA-TGATGAT----------------------G-------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CGAGGAGGACAA--G-------------------------------------------------CGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGTG---------CTGATGA-TGATGAT----------------------C-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TG---------CTGATGA-TGATGAT----------------------G-------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTG---------CTGATGA-TGATGAT----------------------G-------------ATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TGATGA-TGATGAT----------------------G-------------ATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGTG---------CTGATGA-TGATGAT----------------------G-------------ATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2222.00411000000001100000
.............................................................................GCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00202000000000000000
..............................................................................................................................................................................................................................TCTGTCGCGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000010000000
...............................................................................................................................................................................................................................................................................GTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
.................................GAGGTGATAGCAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.............................................................................................................................................................................................................................................................................................GATGA-TGATGAT----------------------G-------------ATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.5511000000000011000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.33300000010001100000
............................................................................................................................................................................................................................................................................................TGATGA-TGATGAT----------------------G-------------ATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13100000000001000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
............................................................................................................................................................................................................................................................................................TGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................TGTG---------CTGATGA-TGATGAT----------------------G-------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.7531020
droYak3
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTAATCT--TTATTTTCTCTTTT------------TTCT--TCCCCACCA----------------A---C--CCA--A-TTCCCGCTGTATCCTGCTATT-------------------------------------TC----------------------CCG-------------------G---------GC-AT------A--TT-------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACAGTTGACCAACAACAATCACACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............GCATCGCAAGTGGCATTTCAGAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26114.0014000000000014
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2122.50500500000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------AATCCTTGCAGAACCCC---AT.............................................2112.00202000000000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2051.60802600000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTT------------TTCT--TCCCCACC...........................................................................................................................................................................................................................................2011.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TCCCCACCA----------------A---C--CCA--A-TTCCC.......................................................................................................................................................................................................2111.00101000000000
..................GCAAGTGGCATTTCAGAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................GA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...................................................................................................................AGGACAA--G-------------------------------------------------CGACGGACGAT---------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...........................ATTTCAGAGGTGATAGCAAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................GCATTTCAGAGGTGATAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25100100000000
droEre2
TCGCACTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTT----G---GGCTTGTGCAG-----------------------------CGAGGAGGACAA--G-------------------------------------------------CGACGGACGAT---------------GGCGA--G------GATCGTCGTCTGTCGCGCCACCAAC----AA--------------CTTTTG----ATGTG---------CTGATGA-TGATGAT----------------------G-------------ATGCCTCCGCACCAGTCGCAAAAAACA------------------------------------------------------------------------GATATC-AACATCTC----------------------G---------TCATTGCCAATTGAAT----TTGTACTGATCT--TTGTTTTCTCTCTT------------TTCT--TCCCCACCA-------------------CC--CCA--A-ATCCCGCTGTGTCCTGCTATT-------------------------------------CC----------------------CCG-------------------G---------GC-AT------A--TT-------AATCCTTGCAGAACCCC---ATCGACGGCGAA------GCGACACATTTGACCAACAACAATCATACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........GTGCATCGCAAGTGGCATTTCAGAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27114.001400000014
.........AGGTGCATCGCAAGTGGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
................................AGAGGTGATAGCAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.................................................................................................................................................................................................................................................................................G---------CTGATGA-TGATGAT----------------------G-------------ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1311000000

Generated: 05/17/2015 at 05:04 AM