dvi_9782

Name	Class	Family	Strand
Gypsy1-I_Dmoj-int	LTR	Gypsy	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGCTCAGTCCCCTGTTCGTAAACGACTCTCTGCATGGCCCGATATTTCGGGTAATATCTCTGCCTCTTTGATGCTGAGCTCGCTCTACGCCTCGCCTTCTCTGTGCACCACTCCAACACCAGGTGCATCTCGATTATTGCTCCGCTCTTTCAGTTGCCAGATGGTAGCAGGCGTTTGCCCACCTATCTCCACTGTAGTGACGATCCGGCCTTTCAGTGGGTGTCTGATTAGTCCCATGCTCCGAGTCCCAT ************************************************......((.((((......((((.((.((.......((((((.((..((((((.(((..(((.........((.(((..........))).))........)))))))))).))..))))))))..)).))..))))......)))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060685 9xArg_0-2h_embryos_total	V047 embryo	SRR060681 Argx9_testes_total
...................................................TAATATCTCTGCCTCTTTGATGC.................................................................................................................................................................................	23	0	2	0.50	1	1	0	0	0
......................................................TATCTCTGCCTCTTTGATGCTGAGCTA..........................................................................................................................................................................	27	1	2	0.50	1	0	1	0	0
..........................................................TCTGCCTCTTTGATGCTGAGCTCGCTC......................................................................................................................................................................	27	0	2	0.50	1	1	0	0	0
.................................................................CTTTGATTATCAGCTCGCTCT.....................................................................................................................................................................	21	3	6	0.17	1	0	0	1	0
................................................................................................................................................................TTGGTACCAGGCGTTTCCCC.......................................................................	20	3	7	0.14	1	0	0	0	1
...................................................................................................................................................................CTAGCAGGCGATTTCCCAC.....................................................................	19	3	20	0.05	1	0	0	1	0

TCGAGTCAGGGGACAAGCATTTGCTGAGAGACGTACCGGGCTATAAAGCCCATTATAGAGACGGAGAAACTACGACTCGAGCGAGATGCGGAGCGGAAGAGACACGTGGTGAGGTTGTGGTCCACGTAGAGCTAATAACGAGGCGAGAAAGTCAACGGTCTACCATCGTCCGCAAACGGGTGGATAGAGGTGACATCACTGCTAGGCCGGAAAGTCACCCACAGACTAATCAGGGTACGAGGCTCAGGGTA ************************************************......((.((((......((((.((.((.......((((((.((..((((((.(((..(((.........((.(((..........))).))........)))))))))).))..))))))))..)).))..))))......)))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR1106729 mixed whole adult body	M047 female body	SRR060686 Argx9_0-2h_embryos_total	SRR060658 140_ovaries_total	SRR060660 Argentina_ovaries_total	SRR060684 140x9_0-2h_embryos_total	GSM1528803 follicle cells	V116 male body	M027 male body
.........................................................................GACGCGAGCGAAATGCGG................................................................................................................................................................	18	2	9	0.44	4	0	0	2	1	0	1	0	0	0	0
.............................................................................................CGGAAGAGACAGGTGGTGGGC.........................................................................................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTAGGCCGGAAAGTC...................................	15	1	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................CGATTAAAGAGACGGAGA........................................................................................................................................................................................	18	2	8	0.13	1	0	0	0	0	1	0	0	0	0	0
.............................................................TGGAGAAACTACGACTGG............................................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................CGAGGCGAAAAAGTC..................................................................................................	15	1	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................AGTCACGTGGTTAGGTTG......................................................................................................................................	18	2	11	0.09	1	0	0	0	1	0	0	0	0	0	0
.......................................GATATAAAGCCCAGTAT...................................................................................................................................................................................................	17	2	17	0.06	1	0	0	0	0	0	0	0	1	0	0
.......AGGGGACCAGTATTTGTTGA................................................................................................................................................................................................................................	20	3	17	0.06	1	0	0	0	0	0	0	0	0	1	0
...............................................GTCGATTAAAGAGACGGAGA........................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:3196470-3196720 -	dvi_9782	AGC---TCAGTCCCCTGTTCGTAA-------------------ACGACTCTCTGCATGGCCCGATATTTCGGGTAATATCTCTGCCTCTTTGATGCTGAGCTCGCTCTACGCC------TCG-----------------CCTT-----------------------------------------------------------------------CTCTGTGCACCACTCCAACACCAGGT-------------------------------------------GCATCTCGATTATTGCTCCGCTCTTTCAGTTGCCAGATGGTAGCAGGCGTTTGCCCACCTATCTCCACTGTAGTGACGATCCGGCCTTT------------CAGTGGGTGTCTGATTAGTCCCATGCTCCGAGTCCCA-T
droMoj3	scaffold_6500:30971144-30971328 +		AAT---TCGTCTACCTGTTCGTCA-------------------ATCACCTTCCTCATAGCCGGATTCTTGGGATGAT----ATCTTTGCTTAAGAGGCTTATCATCCCGCATCCTTATGCTATGCTCGGCGATATTTGAAACTCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGCCAACTCTGCTTCCAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCAGGTCCTC--
droGri2	scaffold_5142:874-960 +		AACAAGTCATCCACCTGTTTGTTG-------------------ATGTCGGCTTGCATTTTGGGGTTTTTAGGGAAGT----ATCGCTGTTTAATTGGCCGATCGTCGCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000010192:1281-1362 +		AGT---GCGTCTACTGTTTCGTTG-------------------ATAATTTGTTGTTGGGACGGATTACGGGGATAGT----ACCTCTGCTTCATGTTTCGATCGGTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_845:4106-4190 +		AGT---TGGTCGACCTGTTCGTCG-------------------ATGATCCGCCGCATGGCCTGATTTTTCGGGTAGTAAGTACCGCTGTTTTATGGTGCGGTTGTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_415:4214-4294 -		AGT---TGGTCGACCTGTTCGTCG-------------------ATGATCCGCCGCATGGCCTGATTTTTCGGGTAGT----ACCGCTGTTTTATGGTGCGGTTGTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12911:1121840-1122054 -		G-C---TCTTCCAACTTCGCGCTT-------------------ATCTCTCCTTGTATTTTCGGGATTTTTGGATAAT----ACCTCTGTTTTATCGGGATGTCGTCCTTCATAGTGATCCTGAGCTGTGTTATGTTCGAGCAGCCTTTCTG---------------------------------------------GCCTGCGAACGCCTTTAACTCCTCCTCCATTAACCTGTTGTCAC-------------------------------------------GCTCTTTTTC---------------CCAGTTTTCCGAGGATAGCTATTGACAGCCTAT----------------------------------------------------------------------------CCTC--
droBip1	scf7180000395957:17473-17600 -		AGC---TCCTCCACTTTTGCGTTT-------------------ATTTCCCCCTGTATTTTCGGGTTTTTGGGGTAAT----ATCGCTGTTTTATGGGAATTTCGTCCTTCATTGTGATCCTTCCCATACCT---------------------------------------------------------------------------------------------------------CTGG-------------------------------------------GCA----------------------------------------------------------------------------------------------------------------------TCCGGCCACTGC--TACG-
droKik1	scf7180000298571:50643-50737 +		AGT---TCGTCGATCTGTTCTTGG-------------------ATTATTTTTTGCATCGCCGGGTTTTTTGGGTAGT----ATCTTTGCTTCAGTGGA-CGTCGTGCTTCATCTATATTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000452372:3807-3949 +		AGC---TCGTCTACCTTTTCGATT-------------------ATCTCCCCCTGCATTTTTGGGTTCTTTGGGTAGT----ACCGCTGCTTCACTGGCTGGTCATCCTTCATCGTGATCTTGTGAACGGCTCCGCTAGAC---------------------------------------------------------TCTTCTAGAGCCTTCAGCTCCTCCTTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000486984:46804-46970 +		AGC---TCGTCTACTTTGGCGTTG-------------------ATCTCGCCCTACATTTTTGGTTTCTTCGGAGAGT----ACCGCTGTTTGACCGGCTGATCGCCTTGCAGATTG------------------------------------------------------------------------------------TCCAGGCTCTCCAACTCTGTCTTTCAAAACTGGTCCACAT-------------------------------------------CCATTTCCTTCGCGGCTTCGCGTCACCTGCTCCCAGA-------------------------------------------------------------------------------------------------------
droRho1	scf7180000769890:3643-3863 +		AGT---TCGTCCACTTGAACGATCAGCTAACGCTATTGAAGTGATGATCTCTTGCATCTCCTCAGGTCTTG-----------ATGC--------------------------------------------CATACGAGAGTACCC---TTC---------------------------------------------GCTTGCAAAGCTCCTCGACGCTCCCGT------------------------------------------ATCCACCGCGCCGGTCACCCATCAT-----------------------------------------------CCTCCGATCTGCACGGTATCGGTGATCAGGCCGTTGTTTATCCTTAACGGTGGGTTTCTT---GGTATCGGGCTGTTAC--TTC--
droBia1	scf7180000298105:1255-1341 -		AGT---TGGTCGATCTGCTCATCG-------------------ATAATCCTCTACATCGCGGGATTCTTAGGAAAAA----ACTTCTGTTTGATGGGCCTTACATCCCGCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414587:1929-2062 -		AGC---TCGTCGACCTCGGCGTTA-------------------ATTTTCCCTTGCATCTTGGGATTCTTGGGATAAT----ACCTTTGTCTGACCGGCTGATCATCTTTCATGGTGATTTTGTGCACCGCTACGGTCGACGTTCCTTGTAT---------------------------------------------ATTCTCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409520:14342-14428 +		AGC---TCGTCGATCTGTTGGTCG-------------------ATGATGGCCCTCATCG---TGTTTCGTGGGTGAT----AGCTTTGTTTGATGGAGCGATCGTTGCGCATCACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3LHet:2200506-2200570 +		AGC---TCGTCGACCTTGGCGTTG-------------------ATCTCCACCTGCATCTTAAGATTTTTCGGGTATT----ACCGCTGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	3l:23563410-23563472 -		AGC---TCGCCGACCTTGGCGTTG-------------------ATCTC--CTTGCATCTTTGGGTTTTTTGGGTAGT----ACCGCTGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_554:398-462 +		AGC---TCGTCGACCTTGGCGTTG-------------------ATCTCCCCTTGCATCTTAGGGTTTTTTGGGTAGT----ACCGCTGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chrUn_5709:251772-251994 -		ACC---GGCTCCAGCATGTCGGTC-------------------ATAAGCAGAAGTGGTATCTGA-----------------------------------------------------------ACCGTCTTTTTTGCGAGCGTCACGTCTGCCAGGAGTATTTGTTTGATCTCCACTTACGACTTGTCGGCCAAAT-TGAT-------------CTGGGTGCGGCATTCCTGGAACTGGTGCGATTGCCCGACGATCGCTCCGGTGTCGACGGTGGCAAG-----------------------------------------------ACGCGTGTGTCCGCCAATTTTGACTTCGGCAGCGATCC----------------------------------------------------------
droEre2	scaffold_4685:181366-181470 +		AAT---TCGTCGACCTTGTCATTG-------------------ATTTCCACCTGCATCTTCGGCTTCTTCGGGTATT----AACGCTGCTTGCCCGGTTCATCGTCTGTCACTGTTATTTTATGCACCGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGC---TCAGTCCCCTGTTCGTAA-------------------ACGACTCTCTGCATGGCCCGATATTTCGGGTAATATCTCTGCCTCTTTGATGCTGAGCTCGCTCTACGCC------TCG-----------------CCTT-----------------------------------------------------------------------CTCTGTGCACCACTCCAACACCAGGT-------------------------------------------GCATCTCGATTATTGCTCCGCTCTTTCAGTTGCCAGATGGTAGCAGGCGTTTGCCCACCTATCTCCACTGTAGTGACGATCCGGCCTTT------------CAGTGGGTGTCTGATTAGTCCCATGCTCCGAGTCCCA-T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................TAATATCTCTGCCTCTTTGATGC.......................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TATCTCTGCCTCTTTGATGCTGAGCTA................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCTGCCTCTTTGATGCTGAGCTCGCTC............................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAT---TCGTCTACCTGTTCGTCA-------------------ATCACCTTCCTCATAGCCGGATTCTTGGGATGAT----ATCTTTGCTTAAGAGGCTTATCATCCCGCATCCTTATGCTATGCTCGGCGATATTTGAAACTCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGCCAACTCTGCTTCCAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCAGGTCCTC--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................TTTGCTTAAGAGGCTTATCATCCCGCA........................................................................................................................................................................................................................................................................................................................	27	20	8.75	175	175	0	0	0	0	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCTCA...............................................................................................................................................................................................................................................................................................................................................................................	26	12	2.42	29	27	0	0	0	2	0
....................................................................................TTTGCTTAAGAGGCTTATCATCCC...........................................................................................................................................................................................................................................................................................................................	24	20	1.35	27	16	0	0	0	11	0
...............................................................................................................TCCTTATGCTATGCTCGGCGATATTT..............................................................................................................................................................................................................................................................................................	26	20	1.10	22	22	0	0	0	0	0
....................................................................................TTTGCTTAAGAGGCTTATCATCCCGCATC......................................................................................................................................................................................................................................................................................................................	29	20	1.05	21	12	0	0	0	9	0
........................................................TAGCCGGATTCTTGGGATGAT----ATC...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................CCTTATGCTATGCTCGGCGATATT...............................................................................................................................................................................................................................................................................................	24	20	0.85	17	17	0	0	0	0	0
...............................................................................................................TCCTTATGCTATGCTCGGCGATATTTG.............................................................................................................................................................................................................................................................................................	27	20	0.80	16	16	0	0	0	0	0
.....................................................................................TTGCTTAAGAGGCTTATCATCCCGCA........................................................................................................................................................................................................................................................................................................................	26	20	0.65	13	13	0	0	0	0	0
....................................................................................TTTGCTTAAGAGGCTTATCATCCCGCAT.......................................................................................................................................................................................................................................................................................................................	28	20	0.60	12	10	0	0	0	2	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCTC................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.42	5	2	0	0	0	2	1
....................................................................................TTTGCTTAAGAGGCTTATCATCCCG..........................................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	5	3
...................................................................................................TATCATCCCGCATCCTTATGCTATGC..........................................................................................................................................................................................................................................................................................................	26	20	0.30	6	4	0	0	0	2	0
........................................................................................................................................TGAAACTCCGTCGAG---------------------------------------------CCCCTCGAAAAGC......................................................................................................................................................................................................................	28	20	0.20	4	3	0	0	0	1	0
....................................................................................TTTGCTTAAGAGGCTTATCATCCCGCAA.......................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	4	0	0	0	0	0
............................................................................................................................................................................................................................TTCCAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCC.............	25	20	0.20	4	0	0	0	0	3	1
......................................................................................TGCTTAAGAGGCTTATCATCCCGCA........................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	4	0	0	0	0	0
........................................................................................................................................TGAAACTCCGTCGAG---------------------------------------------CCCCTCGAAA.........................................................................................................................................................................................................................	25	20	0.20	4	2	0	0	0	1	1
........................................................................................................................................................................................................TCGAAAAGCGCCAACTCTGCTTCCAGG....................................................................................................................................................................................................	27	15	0.20	3	2	0	0	0	0	1
........................................................................................................................................TGAAACTCCGTCGAG---------------------------------------------CCCCTCGA...........................................................................................................................................................................................................................	23	20	0.20	4	4	0	0	0	0	0
....................................................................................TTTGCTTAAGAGGCTTATCATCC............................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	4	0	0	0	0	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCT.................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.17	2	1	0	0	0	0	1
............ACCTGTTCGTCA-------------------ATCACCTTCCTCA...............................................................................................................................................................................................................................................................................................................................................................................	25	12	0.17	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................TGCTTCCAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCG................	25	6	0.17	1	1	0	0	0	0	0
............................................................................T----ATCTTTGCTTAAGAGGCTTATCATC.............................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	2	0	0	0	1	0
................................................................................................................CCTTATGCTATGCTCGGCGATAT................................................................................................................................................................................................................................................................................................	23	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................GAAACTCCGTCGAG---------------------------------------------CCCCTCGAAAAG.......................................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................TCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCAGGTCC....	24	20	0.15	3	1	0	0	0	2	0
.....................................................................................TTGCTTAAGAGGCTTATCATCCC...........................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................TCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCAGGTCCTC--	26	20	0.10	2	1	0	0	0	1	0
............................................................................T----ATCTTTGCTTAAGAGGCTTATCA...............................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................TCCAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTC...........	26	20	0.10	2	0	0	0	0	2	0
........................................................................................................TCCCGCATCCTTATGCTATGCTCGGCGA...................................................................................................................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................GAAACTCCGTCGAG---------------------------------------------CCCCTCGAAAA........................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
...............................................................................................................TCCTTATGCTATGCTCGGCGATATA...............................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
...................................................................................................................TATGCTATGCTCGGCGATATTTGAAAC.........................................................................................................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
................................................................................................................CCTTATGCTATGCTCGGCGATATTT..............................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................TCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGC....................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................TGCTATGCTCGGCGATATTTGAAACTCCG.....................................................................................................................................................................................................................................................................................	29	20	0.10	2	2	0	0	0	0	0
..................................................................................................................TTATGCTATGCTCGGCGATATTTG.............................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
....................................................................................................................ATGCTATGCTCGGCGATATT...............................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
............................................................................................................................................ACTCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGC....................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................TGAAACTCCGTCGAG---------------------------------------------CCCCTCGAA..........................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
.............................................................................................................................TCGGCGATATTTGAAACTCCGTCGAG---------------------------------------------CCC................................................................................................................................................................................................................................	29	20	0.10	2	0	0	0	0	2	0
...............TGTTCGTCA-------------------ATCACCTTCCTCATAGC...........................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
...............TGTTCGTCA-------------------ATCACCTTCCTCATAGCC..........................................................................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	1	0	0	0	0	0
...............TGTTCGTCA-------------------ATCACCTTCCTCATAGCCG.........................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	1	0	0	0	0	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCTCAT..............................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	1	0	0	0	0	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCTCATA.............................................................................................................................................................................................................................................................................................................................................................................	28	12	0.08	1	1	0	0	0	0	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCTCT...............................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
...........TACCTGTTCGTCA-------------------ATCACCTTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................................................................................TCGAAAAGCGCCAACTCTGCTTCCAG.....................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	1	0
..............................................................................................................................................TCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGCCAAC................................................................................................................................................................................................................	28	16	0.06	1	1	0	0	0	0	0
........................................................................................................................................................................................................TCGAAAAGCGCCAACTCTGCTTCC.......................................................................................................................................................................................................	24	17	0.06	1	0	0	0	0	1	0
...............................................................................................................TCCTTATGCTATGCTCGGCGATAT................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................TCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGCCA..................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................TTGAAACTCCGTCGAG---------------------------------------------CCCCTCGA...........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
...................................................................................CTTTGCTTAAGAGGCTTATCATCCC...........................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................CCGTCGAG---------------------------------------------CCCCTCGAAAAGCG.....................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................GCTTAAGAGGCTTATCATCCCGC.........................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................TGCTATGCTCGGCGATATT...............................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................................................................GCTATGCTCGGCGATATTTGAAACTCCG.....................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
......................................................................................TGCTTAAGAGGCTTATCATCCCGC.........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCAGGTCC....	21	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................TATTTGAAACTCCGTCGAG---------------------------------------------CCC................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................TGAAACTCCGTCGAG---------------------------------------------CCCC...............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.......................................................................................GCTTAAGAGGCTTATCATCCCGCA........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
.....................................................................................................TCATCCCGCATCCTTATGCTATGCTC........................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...............................................................................................................TCCTTATGCTATGCTCGGCGATATTTGAA...........................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
...................................................................................CTTTGCTTAAGAGGCTTATCATCCCGC.........................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................TTGAAACTCCGTCGAG---------------------------------------------CCCCTCGAAA.........................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................CAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCA.........	26	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................TGAAACTCCGTCGAG---------------------------------------------CCCCTC.............................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TATGCTATGCTCGGCGATATTTG.............................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...............................................................................................GGCTTATCATCCCGCATCCTTATGC...............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................CAGGAACTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCC..........	25	20	0.05	1	0	0	0	0	0	1
............................................................................T----ATCTTTGCTTAAGAGGCTTATC................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................TTGAAACTCCGTCGAG---------------------------------------------CCCCTCGAAAA........................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TATGCTATGCTCGGCGATATT...............................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................AACTCCGTCGAG---------------------------------------------CCCCTCGAAAAGCGC....................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.....................................................................................TTGCTTAAGAGGCTTATCATCCCGCATC......................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
....................................................................................TTTGCTTAAGAGGCTTATCATCCCGA.........................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................ATGCTCGGCGATATTTGAAACTCCG.....................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................................................TCCTTATGCTATGCTCGGCG....................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........................................................................................TTAAGAGGCTTATCATCCCGCA........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..................................................................................................................TTATGCTATGCTCGGCGATATTTGAAAA.........................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
................................................................................................................CCTTATGCTATGCTCGGCGAT..................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................GAAACTCCGTCGAG---------------------------------------------CCCC...............................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...............................................................................................................TCCTTATGCTATGCTCGGCGATATTTC.............................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGTCCTCCAGGTCCTC--	23	20	0.05	1	1	0	0	0	0	0
....................................................................................TTTGCTTAAGAGGCTTATCATCCAAA.........................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................................CTTAAGAGGCTTATCATCCC...........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.........................................................................................TTAAGAGGCTTATCATCCCGC.........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

AACAAGTCATCCACCTGTTTGTTG-------------------ATGTCGGCTTGCATTTTGGGGTTTTTAGGGAAGT----ATCGCTGTTTAATTGGCCGATCGTCGCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................TAGGGAAGT----ATCGCTGTTTAATTGG......................................................................................................................................................................................................................................................................................................................................	25	14	0.07	1	0	1

droWil2

AGT---GCGTCTACTGTTTCGTTG-------------------ATAATTTGTTGTTGGGACGGATTACGGGGATAGT----ACCTCTGCTTCATGTTTCGATCGGTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................TTTGTTGTTGGGACGGATTACGGG................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	1	0
.............................................................GGATTACGGGGATAGT----ACCTCTGC..............................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	1	0
............................................................CGGATTACGGGGATAGT----ACCTCTGCTTT...........................................................................................................................................................................................................................................................................................................................................	28	9	0.11	1	0	1	0	0	0
............................................................CGGATTACGGGGATAGT----ACCTCTGCTT............................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0
.............................................................GGATTACGGGGATAGT----ACCTCTGCT.............................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	1	0
..............TGTTTCGTTG-------------------ATAATTTGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0
..T---GCGTCTACTGTTTCGTTG-------------------ATAATT......................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	1	0
.................TTCGTTG-------------------ATAATTTGTTGTTGGG............................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	1	0
AGT---GCGTCTACTGTTTCGTTG-------------------ATAA........................................................................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	0	0	1	0
..T---GCGTCTACTGTTTCGTTG-------------------ATA.........................................................................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	0	1	0
..T---GCGTCTACTGTTTCGTTG-------------------ATAAT.......................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	0	0	1	0
...........TACTGTTTCGTTG-------------------ATAAA.......................................................................................................................................................................................................................................................................................................................................................................................	18	18	0.06	1	0	0	0	1	0
..T---GCGTCTACTGTTTCGTTG-------------------ATAA........................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	0	0	0	1	0
..T---GCGTCTACTGTTTCGTTG-------------------A...........................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	1	0
.....................TTG-------------------ATAATTTGTTGTTGG.............................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0

dp5

AGT---TGGTCGACCTGTTCGTCG-------------------ATGATCCGCCGCATGGCCTGATTTTTCGGGTAGTAAGTACCGCTGTTTTATGGTGCGGTTGTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................CGTCG-------------------ATGATCCGCCGCATGGCCT.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................GTTCGTCG-------------------ATGATCCGCCGCATGGCC..........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................TGATTTTTCGGGTAGTAAGTACCG..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................TCGTCG-------------------ATGATCCGCCGCATGGCCT.........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TGTTCGTCG-------------------ATGATCCGCCGCATGGCCTT........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................TCGTCG-------------------ATGATCCGCCGCATGGCC..........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TGTTCGTCG-------------------ATGATCCGCCGCATGG............................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............TGTTCGTCG-------------------ATGATCCGCCGCAT..............................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGT---TGGTCGACCTGTTCGTCG-------------------ATGATCCGCCGCATGGCCTGATTTTTCGGGTAGT----ACCGCTGTTTTATGGTGCGGTTGTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................ATGATCCGCCGCATGGCCTG........................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
......................CG-------------------ATGATCCGCCGCATGGCC..........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droAna3

G-C---TCTTCCAACTTCGCGCTT-------------------ATCTCTCCTTGTATTTTCGGGATTTTTGGATAAT----ACCTCTGTTTTATCGGGATGTCGTCCTTCATAGTGATCCTGAGCTGTGTTATGTTCGAGCAGCCTTTCTG---------------------------------------------GCCTGCGAACGCCTTTAACTCCTCCTCCATTAACCTGTTGTCAC-------------------------------------------GCTCTTTTTC---------------CCAGTTTTCCGAGGATAGCTATTGACAGCCTAT----------------------------------------------------------------------------CCTC--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................TGATCCTGAGCTGTGTTATGTTCGAG...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......TCTTCCAACTTCGCGCTT-------------------ATCTCTCC....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droBip1

AGC---TCCTCCACTTTTGCGTTT-------------------ATTTCCCCCTGTATTTTCGGGTTTTTGGGGTAAT----ATCGCTGTTTTATGGGAATTTCGTCCTTCATTGTGATCCTTCCCATACCT---------------------------------------------------------------------------------------------------------CTGG-------------------------------------------GCA----------------------------------------------------------------------------------------------------------------------TCCGGCCACTGC--TACG-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGT---TCGTCGATCTGTTCTTGG-------------------ATTATTTTTTGCATCGCCGGGTTTTTTGGGTAGT----ATCTTTGCTTCAGTGGA-CGTCGTGCTTCATCTATATTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGC---TCGTCTACCTTTTCGATT-------------------ATCTCCCCCTGCATTTTTGGGTTCTTTGGGTAGT----ACCGCTGCTTCACTGGCTGGTCATCCTTCATCGTGATCTTGTGAACGGCTCCGCTAGAC---------------------------------------------------------TCTTCTAGAGCCTTCAGCTCCTCCTTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGC---TCGTCTACTTTGGCGTTG-------------------ATCTCGCCCTACATTTTTGGTTTCTTCGGAGAGT----ACCGCTGTTTGACCGGCTGATCGCCTTGCAGATTG------------------------------------------------------------------------------------TCCAGGCTCTCCAACTCTGTCTTTCAAAACTGGTCCACAT-------------------------------------------CCATTTCCTTCGCGGCTTCGCGTCACCTGCTCCCAGA-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGT---TCGTCCACTTGAACGATCAGCTAACGCTATTGAAGTGATGATCTCTTGCATCTCCTCAGGTCTTG-----------ATGC--------------------------------------------CATACGAGAGTACCC---TTC---------------------------------------------GCTTGCAAAGCTCCTCGACGCTCCCGT------------------------------------------ATCCACCGCGCCGGTCACCCATCAT-----------------------------------------------CCTCCGATCTGCACGGTATCGGTGATCAGGCCGTTGTTTATCCTTAACGGTGGGTTTCTT---GGTATCGGGCTGTTAC--TTC--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGT---TGGTCGATCTGCTCATCG-------------------ATAATCCTCTACATCGCGGGATTCTTAGGAAAAA----ACTTCTGTTTGATGGGCCTTACATCCCGCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGC---TCGTCGACCTCGGCGTTA-------------------ATTTTCCCTTGCATCTTGGGATTCTTGGGATAAT----ACCTTTGTCTGACCGGCTGATCATCTTTCATGGTGATTTTGTGCACCGCTACGGTCGACGTTCCTTGTAT---------------------------------------------ATTCTCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGC---TCGTCGATCTGTTGGTCG-------------------ATGATGGCCCTCATCG---TGTTTCGTGGGTGAT----AGCTTTGTTTGATGGAGCGATCGTTGCGCATCACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGC---TCGTCGACCTTGGCGTTG-------------------ATCTCCACCTGCATCTTAAGATTTTTCGGGTATT----ACCGCTGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................TTG-------------------ATCTCCACCTGCATCTTAAGATT.....................................................................................................................................................................................................................................................................................................................................................................	26	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	5	0	2	6	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TG-------------------ATCTCCACCTGCATCTTAAGATT.....................................................................................................................................................................................................................................................................................................................................................................	25	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	0	5	3	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................GCGTTG-------------------ATCTCCACCTGCATCTTG..........................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..C---TCGTCGACCTTGGCGTTG-------------------ATC.........................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TCGACCTTGGCGTTG-------------------ATCTC.......................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..C---TCGTCGACCTTGGCGTTG-------------------AT..........................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCGTCGACCTTGGCGTTG-------------------ATCT........................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGACCTTGGCGTTG-------------------ATCT........................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGC---TCGCCGACCTTGGCGTTG-------------------ATCTC--CTTGCATCTTTGGGTTTTTTGGGTAGT----ACCGCTGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................TG-------------------ATCTC--CTTGCATCTTTGGGTTT....................................................................................................................................................................................................................................................................................................................................................................	24	2	34.00	68	0	0	0	0	0	0	18	1	45	4	0	0	0	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGGTTTT...................................................................................................................................................................................................................................................................................................................................................................	25	2	26.50	53	0	0	0	0	0	0	11	0	39	3	0	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTTTGGGT......................................................................................................................................................................................................................................................................................................................................................................	29	2	11.50	23	0	0	0	0	0	0	6	12	4	1	0	0	0	0	0	0	0
............................................................TGGGTTTTTTGGGTAGT----ACCGCTGCT.............................................................................................................................................................................................................................................................................................................................................	26	2	11.00	22	0	0	0	0	0	0	3	2	8	7	2	0	0	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	23	2	9.00	18	0	0	0	0	0	0	3	0	15	0	0	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	24	2	8.50	17	0	0	0	3	0	0	0	4	2	1	7	0	0	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGGT......................................................................................................................................................................................................................................................................................................................................................................	22	2	8.50	17	0	0	0	0	0	0	12	0	5	0	0	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	23	2	6.50	13	0	0	0	2	0	0	0	4	0	0	7	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTTTGGG.......................................................................................................................................................................................................................................................................................................................................................................	28	2	4.50	9	0	0	0	0	0	0	1	4	2	0	0	0	2	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGGTA............................................................................................................................................................................................................................................................................................................................................................	25	2	4.00	8	0	0	0	0	0	0	0	3	0	0	5	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTTT..........................................................................................................................................................................................................................................................................................................................................................................	25	2	3.50	7	0	0	0	1	0	0	0	1	0	1	3	0	1	0	0	0	0
..............................................TC--CTTGCATCTTTGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	25	2	3.50	7	0	0	0	0	0	0	1	0	4	0	2	0	0	0	0	0	0
....................GTTG-------------------ATCTC--CTTGCATCTTTGGGTTT....................................................................................................................................................................................................................................................................................................................................................................	26	2	3.50	7	0	0	0	0	0	0	0	0	6	0	1	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCATCTTT..........................................................................................................................................................................................................................................................................................................................................................................	24	2	3.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
............................................................TGGGTTTTTTGGGTAGT----ACCGCTGC..............................................................................................................................................................................................................................................................................................................................................	25	2	3.00	6	0	0	0	0	0	0	2	1	1	0	1	0	1	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGGTTTTT..................................................................................................................................................................................................................................................................................................................................................................	26	2	3.00	6	0	0	0	0	0	0	3	0	2	0	1	0	0	0	0	0	0
.................GGCGTTG-------------------ATCTC--CTTGCATCTTTGGGT......................................................................................................................................................................................................................................................................................................................................................................	27	2	2.50	5	0	0	0	1	0	0	0	3	0	0	1	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTTTG.........................................................................................................................................................................................................................................................................................................................................................................	26	2	2.00	4	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0
........................................................TCTTTGGGTTTTTTGGGTAGT----ACCGC.................................................................................................................................................................................................................................................................................................................................................	26	2	2.00	4	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0
...........................................................TTGGGTTTTTTGGGTAGT----ACCGCTGC..............................................................................................................................................................................................................................................................................................................................................	26	2	1.50	3	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0
...........................................................TTGGGTTTTTTGGGTAGT----ACCGCTGCT.............................................................................................................................................................................................................................................................................................................................................	27	2	1.50	3	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
..............................................TC--CTTGCATCTTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	26	2	1.50	3	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................TTTGGGTTTTTTGGGTAGT----ACCGC.................................................................................................................................................................................................................................................................................................................................................	24	2	1.50	3	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCATCTTTGGGT......................................................................................................................................................................................................................................................................................................................................................................	28	2	1.50	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
....................GTTG-------------------ATCTC--CTTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
.....................TTG-------------------ATCTC--CTTGCATCTTTGGGTTT....................................................................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
....................GTTG-------------------ATCTC--CTTGCATCTTTGG........................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................TCTC--CTTGCATCTTTGGGTTTT...................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGG...............................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............CTTGGCGTTG-------------------ATCTC--CTTGCATCTT...........................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGGTTTTTTGG...............................................................................................................................................................................................................................................................................................................................................................	29	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTT..................................................................................................................................................................................................................................................................................................................................................................................	17	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................GTTG-------------------ATCTC--CTTGCATCTTTGGGT......................................................................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCATCTTTGG........................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0
......TCGCCGACCTTGGCGTTG-------------------ATCTC--CTT..................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--C....................................................................................................................................................................................................................................................................................................................................................................................	15	10	1.00	10	0	0	0	0	0	0	0	0	0	3	7	0	0	0	0	0	0
........................................................TCTTTGGGTTTTTTGGGTAGT----AAAA..................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................TTG-------------------ATCTC--CTTGCATCTTTGGGTTTT...................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................TTTGGGTTTTTTGGGTAGT----ACCGCTG...............................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................GGGTTTTTTGGGTAGT----ACCGCT................................................................................................................................................................................................................................................................................................................................................	22	4	0.75	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGC................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTT...........................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCA...............................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................TGGGTTTTTTGGGTAGT----ACCGCTG...............................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................GTTG-------------------ATCTC--CTTGCATCTTTG.........................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................ATCTTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................ATCTTTGGGTTTTTTGGGTAG...........................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGGC.............................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCATC.............................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................TC--CTTGCATCTTTGGGTTTTTTGGGTA............................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............CTTGGCGTTG-------------------ATCTC--CTTGCATC.............................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................GTTTTTTGGGTAGT----ACCGCTGC..............................................................................................................................................................................................................................................................................................................................................	22	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCAT..............................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................G-------------------ATCTC--CTTGCATCTTT..........................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGTC.............................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................CGTTG-------------------ATCTC--CTTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTTTGGGC......................................................................................................................................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	30	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................TG-------------------ATCTC--CTTGCATCTTTGGG.......................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................GCATCTTTGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCT............................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............CTTGGCGTTG-------------------ATCTC--CTTGCATCTTT..........................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATC.............................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CGTTG-------------------ATCTC--CTTGCATCTTTG.........................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................GGCGTTG-------------------ATCTC--CTTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................TTGCATCTTTGGGTTTTTTGGGTA............................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................GGCGTTG-------------------ATCTC--CTTGCATCTTTGT........................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCGCCGACCTTGGCGTTG-------------------ATCTC--CT...................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................TCTTTGGGTTTTTTGGGTAGT----ACC...................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTG................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................TCTC--CTTGCATCTTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGGTAGT----......................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCATCTTTG.........................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........GACCTTGGCGTTG-------------------ATCTC--CTTGCATC.............................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................TGCATCTTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGGTAG...........................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................TTTGGGTTTTTTGGGTAGT----AC....................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................TTTGGGTTTTTTGGGTAGT----ACCGCT................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................TCTC--CTTGCATCTTTGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................TCTTTGGGTTTTTTGGGTAGT----ACCGCT................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGCATCTTTA.........................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............TTGGCGTTG-------------------ATCTC--CTTGC................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............CTTGGCGTTG-------------------ATCTC--CT...................................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................G-------------------ATCTC--CTTGCATCTTTGGGTTTTTT.................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTTTTTGGGTAT...........................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGT......................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................TGGCGTTG-------------------ATCTC--CTTGCATCTTTGGG.......................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................TTGCATCTTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................TTGCATCTTTGGGTTTTTTGGGTAGT----AC....................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTTT....................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................TGGGTAGT----ACCGCTGCT.............................................................................................................................................................................................................................................................................................................................................	17	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................TTG-------------------ATCTC--CTTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......TCGCCGACCTTGGCGTTG-------------------ATCTC--CTTGCA...............................................................................................................................................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................GGCGTTG-------------------ATCTC--CTTGCA...............................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................TTTTTGGGTAGT----ACCGCTGC..............................................................................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................CTTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............ACCTTGGCGTTG-------------------ATCTC--.....................................................................................................................................................................................................................................................................................................................................................................................	17	9	0.44	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.........................................................CTTTGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................TTTTGGGTAGT----ACCGCTGCT.............................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................TTTTTTGGGTAGT----ACCGCT................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................TTTGGGTAGT----ACCGCTGC..............................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................TTTGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	16	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................TTTTGGGTAGT----ACCGCTGT..............................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TTGCATCTTTGGGTT.....................................................................................................................................................................................................................................................................................................................................................................	15	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................TTTTTTGGGTAGT----ACCGCTGC..............................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................TTGGGTAGT----ACCGCTGCT.............................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........GACCTTGGCGTTG-------------------ATCTC--C....................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........GACCTTGGCGTTG-------------------ATC.........................................................................................................................................................................................................................................................................................................................................................................................	16	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............CTTGGCGTTG-------------------ATCTC--.....................................................................................................................................................................................................................................................................................................................................................................................	15	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

AGC---TCGTCGACCTTGGCGTTG-------------------ATCTCCCCTTGCATCTTAGGGTTTTTTGGGTAGT----ACCGCTGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................CTTGCATCTTAGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	23	20	7.25	145	65	5	69	6
..................................................CTTGCATCTTAGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	24	20	6.20	124	88	0	33	3
..................................................CTTGCATCTTAGGGTTTTTTGGGTAG...........................................................................................................................................................................................................................................................................................................................................................	26	20	1.25	25	22	2	0	1
..................................................CTTGCATCTTAGGGTTTTTTGGGTA............................................................................................................................................................................................................................................................................................................................................................	25	20	0.55	11	0	0	9	2
..................................................CTTGCATCTTAGGGTTTTTTGG...............................................................................................................................................................................................................................................................................................................................................................	22	20	0.35	7	0	0	7	0
...................................................TTGCATCTTAGGGTTTTTTGGG..............................................................................................................................................................................................................................................................................................................................................................	22	20	0.25	5	5	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGT..............................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	3	0	0	1
...................................................TTGCATCTTAGGGTTTTTTGG...............................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	4	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGGTAT...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGGG.............................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	2	0	1	0
..................................................CTTGCATCTTAGGGTTTTTTGGGTT............................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0
...................................................TTGCATCTTAGGGTTTTTTGGGTA............................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0
...................................................TTGCATCTTAGGGTTTTTTGGGT.............................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0
...................................................TTGCATCTTAGGGTTTTTTGGGTAG...........................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0
...................................................TTGCATCTTAGGGTTTTTTGGGC.............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGGTAGT----A.....................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGTA.............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
..................................................CTTGCATCTTAGGGTTTTTTGGGAT............................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
.........................................................CTTAGGGTTTTTTGGGTAGT----ACCGC.................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
..........................................................TTAGGGTTTTTTGGGTAGT----ACCGC.................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTG................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGGC.............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGGTCA...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
....................................................TGCATCTTAGGGTTTTTTGG...............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0
....................................................TGCATCTTAGGGTTTTTTGGGTA............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0
..................................................CTTGCATCTTAGGGTTTTTTGGGATT...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGGTAA...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGT...............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0
..................................................CTTGCATCTTAGGGTTTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0
..................................................CTTGCATCTTAGGGTTTTTTGGGAC............................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
..................................................CTTGCATCTTAGGGTTTTTTGGGTTT...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0

droYak3

ACC---GGCTCCAGCATGTCGGTC-------------------ATAAGCAGAAGTGGTATCTGA-----------------------------------------------------------ACCGTCTTTTTTGCGAGCGTCACGTCTGCCAGGAGTATTTGTTTGATCTCCACTTACGACTTGTCGGCCAAAT-TGAT-------------CTGGGTGCGGCATTCCTGGAACTGGTGCGATTGCCCGACGATCGCTCCGGTGTCGACGGTGGCAAG-----------------------------------------------ACGCGTGTGTCCGCCAATTTTGACTTCGGCAGCGATCC----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................TGATCTCCACTTACGACTTGTCGGC........................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAT---TCGTCGACCTTGTCATTG-------------------ATTTCCACCTGCATCTTCGGCTTCTTCGGGTATT----AACGCTGCTTGCCCGGTTCATCGTCTGTCACTGTTATTTTATGCACCGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................TG-------------------ATTTCCACCTGCATCTTCGGCTT.....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1
..............................................TCCACCTGCATCTTCGGCTTCTT..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
......................TG-------------------ATTTCCACCTGCATCTTCGG........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.25	5	5	0	0	0	0	0	0
......................TG-------------------ATTTCCACCTGCATCTTC..........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0

dvi_9782

scaffold_12958:3196520-3196670 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.2	-31.8	-31.6