dvi_9780

CDS [Dvir\GJ11204-cds]; exon [dvir_GLEANR_11224:1]; intron [Dvir\GJ11204-in]; Antisense to intron [Dvir\GJ11139-in]

Sense Strand Reads

Anti-sense strand reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACACCCGACACCAACCAATAAAGCGGCAATGGCGACAAAGCGGCTACGGCGTAAGCAGTAGTAGCGGCGACAAAGCAACGGAGACAAAACACCAACAGCCGCGGCAGTTCGACACTTATAAATATTAAGCCCAATTTTGTCAAGTTAGTTCTTAACCTGCTCTAGAATAAACAGTTGTAGTTGTTTTTAATAGAAACAATTATAAATTGTTATAATTTGCTTATAAGAATTCTTGGAATTTGCGCCTGCTG ************************************************...(((((.....(((((.............................)))))(((((.......((((.......)))).......)))))..((((.....)))))))))(((.(((.....))).)))((((((((...))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	V047 embryo	M027 male body	SRR060658 140_ovaries_total
.............................................................................................................................................TAGGTAGTTCTTACCCTGCTCT........................................................................................	22	3	1	2.00	2	2	0	0	0
.............................................................................................................................................TAGTTAGTTCTCTACCTGCTCT........................................................................................	22	3	1	1.00	1	1	0	0	0
.............................................................................................................................................TAGTTAGTTCACAACCTGCTCT........................................................................................	22	3	1	1.00	1	1	0	0	0
.........................................GGCTAGGGCGAAAGCCGTAGT.............................................................................................................................................................................................	21	3	1	1.00	1	0	1	0	0
..............................................................................................AGAGGCGCGACAGTTCGACACT.......................................................................................................................................	22	3	1	1.00	1	1	0	0	0
...............................................GGCGTAAGCAGTCGGAGC..........................................................................................................................................................................................	18	2	2	0.50	1	0	0	1	0
.............................................................................................................................................TAGGTAGTTCTTATCCTGCTC.........................................................................................	21	3	2	0.50	1	1	0	0	0
...................................................................................................................................................................................................................................AATTCTTGGAATTTGCGC......	18	0	20	0.05	1	0	0	0	1

TGTGGGCTGTGGTTGGTTATTTCGCCGTTACCGCTGTTTCGCCGATGCCGCATTCGTCATCATCGCCGCTGTTTCGTTGCCTCTGTTTTGTGGTTGTCGGCGCCGTCAAGCTGTGAATATTTATAATTCGGGTTAAAACAGTTCAATCAAGAATTGGACGAGATCTTATTTGTCAACATCAACAAAAATTATCTTTGTTAATATTTAACAATATTAAACGAATATTCTTAAGAACCTTAAACGCGGACGAC ************************************************...(((((.....(((((.............................)))))(((((.......((((.......)))).......)))))..((((.....)))))))))(((.(((.....))).)))((((((((...))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060688 160_ovaries_total	M047 female body	V047 embryo	SRR060664 9_males_carcasses_total	SRR060666 160_males_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060682 9x140_0-2h_embryos_total	SRR060678 9x140_testes_total
..................................................................................................................................................................................................................ATATTAAACGAATATTCTTAAGAACC...............	26	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................TCGTCTCCCCTGTTTTGTGG..............................................................................................................................................................	20	3	6	0.50	3	0	3	0	0	0	0	0	0
..........................................................................................AGGTTGTAGGCGCCGTCAAT.............................................................................................................................................	20	3	3	0.33	1	0	0	1	0	0	0	0	0
........................................................................................................................TTATAATCAGGGTTAAAACA...............................................................................................................	20	2	6	0.17	1	0	0	0	1	0	0	0	0
......................................................................................................................AATTATAATCAGGGTTAAAACA...............................................................................................................	22	3	6	0.17	1	0	0	0	0	1	0	0	0
.........................................................................................................................TATAATCAGGGTTAAAACA...............................................................................................................	19	2	9	0.11	1	0	0	0	0	0	1	0	0
........................................................TCACCATCGCCGCTGATTG................................................................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................AAAATTTAACAATATTAA..................................	18	1	20	0.05	1	0	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:3143195-3143445 +	dvi_9780	ACACCCGACACCA------ACCAATAAAGCGG-------------------------------------------CAA--------T---------------G-GC-GACAAAGCGGCTACG--GCGTA---AG------------CA---------------------GT---AG---TAGC------------GGCGACAAAGCAACGGAGACAAAAC------ACCAACAGCCGCGG--------------------CAGTTCGACACTTA----TAA-------ATAT-------------TAAGCCCAATTTTGTCAAGTTAGTTCTTAA-CCTGCTCTAGAATAAACAGTTGT--AGTTGTTTTTAATAGAAACAATTATAAATTGTTA-----------------------------------------------TAATTTGCTTATA----------AGAATTCTTGGAATTTG---CGCCTGCTG
droMoj3	scaffold_6498:2490661-2490918 -		AGCGCCGAGTCA--------------GCGCACCGATCAGCACCA------------------------CCGTGAGAGCCATC---GT-----------------GC-CACAAGACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGACCACGGCGGCAG--------------------CGACGC-----CAATAGCAGCAG-----------CGGCAGCTTTC----------ATATAAATAGTACTTGTATAATTA-----------------TTCTTAAGTTAGTTCTAA-TCCAACTCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTTTAA--TCCAAAAACCGCTTTCGAATATTTAATTTATATATACTT-------------TGTGGGGTCTGCCACGCCTCCTT
droGri2	scaffold_14592:55758-55960 +		ACAACCGACACCTCC----ACCAA---------------------------------------------------TAGGACA-------------------------------ACAACTACAAAGCTAC---AG------------CG---------------------AC---CA---AAAC------------GACATCGAC-----------AAGAC------GCCAGCAGAGTCAG--------------------CAGTCCGA------------------GTTTAA-------TTATGATAAGCTAGAGTTTACAAAATCAGTTCTACT-AAAGCACTCA-------------AA-----------------------------------CAAAACGATTC-AGTTTTTGTTGAATAAAAACAATAAGGAATAGTTTAATTTTTATATA---------------------------------------
droWil2	scf2_1100000004558:342494-342571 +		TAACCGATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTA------------------ACCAACATTTGTTTAT--------------------------------------ACTCTTATCAATTGTAAATTGCTT-----------------------------------------------TAATGTGAATATA----------AAAAGTT---------------------T
dp5	3:19706167-19706243 -		CACCCAA-TA----------------AGGCGG-------------------------------------------CAA--------T---------------A-GC-AGCAGGACAACTACAAACAACA---AA------------CA---------------------AC---TA---CAAC------------AGAAGCAAC-----------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAAAC---------------------A
droPer2	scaffold_1:8081478-8081595 +		CAACAC-----------------------------------------------------------------------------CAACAGCAACAA-CAAC-A------AC--------AAAG--GCAGC---AA------------CA---------------------GC---AA---TC------------ACTGCAGAAATT------------------CAG-----CGGCAACAAAAATCATTAAGCGTCGG---CAATTTGGCATAAA----TAA-------------------------------------------------------------------------------------------------------------------AT-----------------------------------AAAAAA------------TC---CC-------AG----T---------------------T
droBip1	scf7180000392265:24552-24593 +		ACAGAGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTTAAATTGTCG-----------------------------------------------CAA-----------TTTCCTTT-AAAAAAT---------------------T
droKik1	scf7180000302610:523298-523369 -		ACTAAAAA-------------------AGCG----------------------------------------------------CAGT---------------A-GCCGTAGTAGCAGCAGCA--GCATC---AG------------CA---------------------GC---GA---TGGC------------GAAGGCAAC-------------------------------------GCA------------AC--------GGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------C
droFic1	scf7180000454095:15573-15712 +		GCAACCATCACCA-------------------------------------------------------ACAAGGGATCGGCA---GCAGCGACGAC------A-GCAA--------------------C---AG------------CA---------------------GC---AG---CAGCGGCACCAACAGCAGCAG--------------------CGACGG-----CAGCAGCAGCGG-----------TGGC--------AGCGAG-------------------------------------------------------------------------------------------------------TC---TTCATTCTTAAGTCTTA---------------------------------------------CCA-----------TTGTTATA-AGTCAGTT--------------------C
droEle1	scf7180000490906:9728-9994 -		GCATACAACAAAA-------------------------ACTATAATTAAAATGCACTGGCCAATTACAATTAAGTTTG---GCCAACGGCGACGG-CGACCA----------------------------------------AGAGCAGCAACCAATAATATGAAAGA-AC---GTCAACAGAAACATCAACAGCGGCAG--------------------AGACGG-----CGGCAGCGATGGA------------GC--------GACGCGTAGCTATAA-AAACAATTGTTTAATCT------------------AAGTAAGTTAGTTCTTAATCCAACTCAAT-------------AT-----------------------------------AGGAAAGTTTGATATTTT-TA--TATAAAAATCATAACCAATCTTTTAACTTATATATA---------------------------------------
droRho1	scf7180000779054:4965-5256 -		CCAAGTGCATACA---ACAA---------------AA-ACTATAACTTGAATGCATTGGCCAATGGCAATTAAAATTG---GCCAACAGCGACAG-CGAAGA----------------------------------------ATAGCAGCAACCAATAATAATAAAGA-AC---GTTAGCAGAAACAGCAGCAGCGGCAG--------------------AGACGG-----TGGCAGCGATGGA------------AC--------GACGCGTAGTCATAATGAATAATTGTTTAGCTT-----------------AATTAAAGTTAGTTCTTAATCCAACTCAAT-------------AA-----------------------------------AGAAAAGATTG-ATTTTT-TA--TATAA-AATTATAATTAATCTTTTAACTTGTATATT----------AAA---------GTCTAA-ATGTTTGCAC
droBia1	scf7180000299429:21353-21409 -		TTGTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAAAAAATTTGAAATTGATTTAA-----------------------------------TAAAGT------------TT---TT-------AGTTTTCTTGA-----------------A
droTak1	scf7180000412786:22929-23076 +		TTAGACACCTT---A----ATTAA--------------------------------TATTGATTTAAATCCATTTTTAAGAACCTCAGATGAGTA-ATTT-A----------------------------------------A------------------------------------------------------GGG-----------------------------------------------------------------------------------------------------------------------------------------CTGCTCCTGACCAAAAAGTTTC--TGTTAAATTTAATAGAGTTTATTAAGTATTTTTA---TAAAA------------------------------TGTAT------------------TTTCTTATTAATATTT---------------------T
droEug1	scf7180000409135:12500-12592 -		CTCGACTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT------------------TTTTTCTTGT-------TT---------------ATAATAAATTCTTTTTATGGCGG----------------------AGTCGT-----------------------------------------TTTTCC-TA--CAGAT-AATTATAAACAGT-------------TT---TT-------ATTTACC---------------------T
droSec2	scaffold_6817:1246-1329 +		CAACCAAATA----------------GAGAGG-------------------------------------------CAG--------A---------------A-GA-GGCA----------------TCGGCAGCGACGACAGCAGCA---------------------GTACTGG---TGGC------------GAAAG---AAAG----------------------------------CCG------------TC--------GGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAC---------------------C
droYak3	v2_chr2h_random_005:281402-281555 -		ACACCTAACACCTAA----AACGA---------------------------------------------------CAAGACA-AGGC---------------AAACAA--------------------C---AGCGG---------CA---------------------GC---GG---TG------------TCCCC----------------------------ACCAACGGCAGCAG--------------------AGGTC---------CCCTAAGCTAATTCATAT-------TT---------------CTCTTAAGTTAGTTCTAGATCGGACTTCAA-------------TC-----------------------------------AATAAAGTTTG-TTTTTT-TA--TATAC----------------------------------------------AA---------------------A
droEre2	scaffold_4929:21283473-21283610 +		AGGAATCACAT-TTCATCAACCGG--------------------------------CAGCCAATGCCGATCAGCGCGAAACACCTTCGGCGACAG-CGAC-A----------------------------------------ACGACAACGACCAATGACATCGATGGAGC---A----CAAAAAC-------TCGGCAG--------------------AGA-AG-----CAGCAGCGTCAGA------------AT--------GACGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACACCCGACACCA------ACCAATAAAGCGG-------------------------------------------CAA--------T---------------G-GC-GACAAAGCGGCTACG--GCGTA---AG------------CA---------------------GT---AG---TAGC------------GGCGACAAAGCAACGGAGACAAAAC------ACCAACAGCCGCGG--------------------CAGTTCGACACTTA----TAA-------ATAT-------------TAAGCCCAATTTTGTCAAGTTAGTTCTTAA-CCTGCTCTAGAATAAACAGTTGT--AGTTGTTTTTAATAGAAACAATTATAAATTGTTA-----------------------------------------------TAATTTGCTTATA----------AGAATTCTTGGAATTTG---CGCCTGCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTTGGAATTTG---CGC......	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCGCCGAGTCA--------------GCGCACCGATCAGCACCA------------------------CCGTGAGAGCCATC---GT-----------------GC-CACAAGACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGACCACGGCGGCAG--------------------CGACGC-----CAATAGCAGCAG-----------CGGCAGCTTTC----------ATATAAATAGTACTTGTATAATTA-----------------TTCTTAAGTTAGTTCTAA-TCCAACTCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTTTAA--TCCAAAAACCGCTTTCGAATATTTAATTTATATATACTT-------------TGTGGGGTCTGCCACGCCTCCTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGACC................................................................................................................................................................................................................................................................................................................	28	11	0.64	7	3	1	0	0	3	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGC.......................................................................................................................................................................................................................................................................................................................	21	12	0.58	7	2	0	0	0	5	0
.....................................................................................................................................................................................................................................................................................................................................................TCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTTT...............................................................................	25	10	0.50	5	5	0	0	0	0	0
..........................................CA------------------------CCGTGAGAGCCATC---GT-----------------GC-CACAAG.............................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCA......................................................................................................................................................................................................................................................................................................................	22	12	0.33	4	4	0	0	0	0	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAG.....................................................................................................................................................................................................................................................................................................................	23	12	0.25	3	2	0	0	0	1	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGT....................................................................................................................................................................................................................................................................................................................	24	11	0.18	2	2	0	0	0	0	0
..................................................................................................................CACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGT....................................................................................................................................................................................................................................................................................................................	23	11	0.18	2	2	0	0	0	0	0
..................................................................................................................CACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAG.....................................................................................................................................................................................................................................................................................................................	22	12	0.17	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATG-TTTTTTTAA--TCCAAAAACCGC...............................................................	28	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAAACCGCTTTCGAATATTTA..................................................	25	9	0.11	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTTTA..............................................................................	26	9	0.11	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAA--TCCAAAAACCGCC..............................................................	20	9	0.11	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................CCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTTT...............................................................................	24	10	0.10	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTTTC..............................................................................	26	10	0.10	1	1	0	0	0	0	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGAC.................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	1	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGA..................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTTT................................................................................	24	11	0.09	1	1	0	0	0	0	0
...................................................................................................................ACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGACCAC..............................................................................................................................................................................................................................................................................................................	28	11	0.09	1	1	0	0	0	0	0
.................................................................................................................ACACCTAT-------C---AG------------CA---------------------GC---AA---CAGCAGTGACCA...............................................................................................................................................................................................................................................................................................................	29	11	0.09	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TCCGA-------------AA-----------------------------------GTGAATAAATG-TTTTT.................................................................................	23	11	0.09	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TTCTAA-TCCAACTCCGA-------------AA-----------------------------------GTGAAT............................................................................................	25	12	0.08	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCCAACTCCGA-------------AA-----------------------------------GTGAATAAATG-TTT...................................................................................	27	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TTCTAA-TCCAACTCCGA-------------AA-----------------------------------GTGA..............................................................................................	23	12	0.08	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TCTTAAGTTAGTTCTAA-TCCAACTCCGA-------------.......................................................................................................................................	28	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTA-----------------TTCTTAAGTTAGTTCTAA-TCCAAC.........................................................................................................................................................	27	12	0.08	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................AGTTCTAA-TCCAACTCCGA-------------AA-----------------------------------GTGA..............................................................................................	25	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AAGTTAGTTCTAA-TCCAACTCCGA-------------AA-----------------------------------..................................................................................................	26	13	0.08	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................ATTA-----------------TTCTTAAGTTAGTTCTAA-TCC............................................................................................................................................................	25	16	0.06	1	1	0	0	0	0	0
.....................................................................................................................................G------------CA---------------------GC---AA---CAGCAGTGACCACGGC...........................................................................................................................................................................................................................................................................................................	23	18	0.06	1	0	0	0	0	1	0
............................................................................................................................................................................................................................CGACGC-----CAATAGCAGCAG-----------CGG.............................................................................................................................................................................................................................................	21	19	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATACTT-------------TGTGGGGTCTGC...........	22	20	0.05	1	0	0	0	0	1	0

droGri2

ACAACCGACACCTCC----ACCAA---------------------------------------------------TAGGACA-------------------------------ACAACTACAAAGCTAC---AG------------CG---------------------AC---CA---AAAC------------GACATCGAC-----------AAGAC------GCCAGCAGAGTCAG--------------------CAGTCCGA------------------GTTTAA-------TTATGATAAGCTAGAGTTTACAAAATCAGTTCTACT-AAAGCACTCA-------------AA-----------------------------------CAAAACGATTC-AGTTTTTGTTGAATAAAAACAATAAGGAATAGTTTAATTTTTATATA---------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TAACCGATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTA------------------ACCAACATTTGTTTAT--------------------------------------ACTCTTATCAATTGTAAATTGCTT-----------------------------------------------TAATGTGAATATA----------AAAAGTT---------------------T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

CACCCAA-TA----------------AGGCGG-------------------------------------------CAA--------T---------------A-GC-AGCAGGACAACTACAAACAACA---AA------------CA---------------------AC---TA---CAAC------------AGAAGCAAC-----------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAAAC---------------------A

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CAACAC-----------------------------------------------------------------------------CAACAGCAACAA-CAAC-A------AC--------AAAG--GCAGC---AA------------CA---------------------GC---AA---TC------------ACTGCAGAAATT------------------CAG-----CGGCAACAAAAATCATTAAGCGTCGG---CAATTTGGCATAAA----TAA-------------------------------------------------------------------------------------------------------------------AT-----------------------------------AAAAAA------------TC---CC-------AG----T---------------------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droBip1

ACAGAGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTTAAATTGTCG-----------------------------------------------CAA-----------TTTCCTTT-AAAAAAT---------------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTAAAAA-------------------AGCG----------------------------------------------------CAGT---------------A-GCCGTAGTAGCAGCAGCA--GCATC---AG------------CA---------------------GC---GA---TGGC------------GAAGGCAAC-------------------------------------GCA------------AC--------GGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAACCATCACCA-------------------------------------------------------ACAAGGGATCGGCA---GCAGCGACGAC------A-GCAA--------------------C---AG------------CA---------------------GC---AG---CAGCGGCACCAACAGCAGCAG--------------------CGACGG-----CAGCAGCAGCGG-----------TGGC--------AGCGAG-------------------------------------------------------------------------------------------------------TC---TTCATTCTTAAGTCTTA---------------------------------------------CCA-----------TTGTTATA-AGTCAGTT--------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCATACAACAAAA-------------------------ACTATAATTAAAATGCACTGGCCAATTACAATTAAGTTTG---GCCAACGGCGACGG-CGACCA----------------------------------------AGAGCAGCAACCAATAATATGAAAGA-AC---GTCAACAGAAACATCAACAGCGGCAG--------------------AGACGG-----CGGCAGCGATGGA------------GC--------GACGCGTAGCTATAA-AAACAATTGTTTAATCT------------------AAGTAAGTTAGTTCTTAATCCAACTCAAT-------------AT-----------------------------------AGGAAAGTTTGATATTTT-TA--TATAAAAATCATAACCAATCTTTTAACTTATATATA---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAAGTGCATACA---ACAA---------------AA-ACTATAACTTGAATGCATTGGCCAATGGCAATTAAAATTG---GCCAACAGCGACAG-CGAAGA----------------------------------------ATAGCAGCAACCAATAATAATAAAGA-AC---GTTAGCAGAAACAGCAGCAGCGGCAG--------------------AGACGG-----TGGCAGCGATGGA------------AC--------GACGCGTAGTCATAATGAATAATTGTTTAGCTT-----------------AATTAAAGTTAGTTCTTAATCCAACTCAAT-------------AA-----------------------------------AGAAAAGATTG-ATTTTT-TA--TATAA-AATTATAATTAATCTTTTAACTTGTATATT----------AAA---------GTCTAA-ATGTTTGCAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAAAAAATTTGAAATTGATTTAA-----------------------------------TAAAGT------------TT---TT-------AGTTTTCTTGA-----------------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTAGACACCTT---A----ATTAA--------------------------------TATTGATTTAAATCCATTTTTAAGAACCTCAGATGAGTA-ATTT-A----------------------------------------A------------------------------------------------------GGG-----------------------------------------------------------------------------------------------------------------------------------------CTGCTCCTGACCAAAAAGTTTC--TGTTAAATTTAATAGAGTTTATTAAGTATTTTTA---TAAAA------------------------------TGTAT------------------TTTCTTATTAATATTT---------------------T	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTCGACTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT------------------TTTTTCTTGT-------TT---------------ATAATAAATTCTTTTTATGGCGG----------------------AGTCGT-----------------------------------------TTTTCC-TA--CAGAT-AATTATAAACAGT-------------TT---TT-------ATTTACC---------------------T	Size	Hit Count	Total Norm	Total
No Reads

droSec2

CAACCAAATA----------------GAGAGG-------------------------------------------CAG--------A---------------A-GA-GGCA----------------TCGGCAGCGACGACAGCAGCA---------------------GTACTGG---TGGC------------GAAAG---AAAG----------------------------------CCG------------TC--------GGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAC---------------------C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................AGCGACGACAGCAGCA---------------------GTACTGG---TGGC------------...........................................................................................................................................................................................................................................................................................................	27	9	0.11	1	1	0	0	0
.............................................................................................................CA----------------TCGGCAGCGACGACAGC..............................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

ACACCTAACACCTAA----AACGA---------------------------------------------------CAAGACA-AGGC---------------AAACAA--------------------C---AGCGG---------CA---------------------GC---GG---TG------------TCCCC----------------------------ACCAACGGCAGCAG--------------------AGGTC---------CCCTAAGCTAATTCATAT-------TT---------------CTCTTAAGTTAGTTCTAGATCGGACTTCAA-------------TC-----------------------------------AATAAAGTTTG-TTTTTT-TA--TATAC----------------------------------------------AA---------------------A

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

AGGAATCACAT-TTCATCAACCGG--------------------------------CAGCCAATGCCGATCAGCGCGAAACACCTTCGGCGACAG-CGAC-A----------------------------------------ACGACAACGACCAATGACATCGATGGAGC---A----CAAAAAC-------TCGGCAG--------------------AGA-AG-----CAGCAGCGTCAGA------------AT--------GACGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_9780

scaffold_12958:3143245-3143395 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads