dvi_9761

Name	Class	Family	Strand
Ulysses_I-int	LTR	Gypsy	+

AGTTTTTCTATAACTCCTAGTCCTTGCTGGGTATGAGAACAAAAGTCGGTTCAACGTGTTTGTAGTCGCCTTGATAAGGCATCGACTTCTCCTCACGAATGACCGGTATTTATACAAGTCTGGGATATATCTTCCCTACGGAAAGTGTACATAGTGACAAGTGCGGTAGAATATTACCGACTACAGACACTTCGTGGATTCGCCCTCTCAACGTAGGCGTTCCGATACTGAAATGGTAGTTCGTTGCATTT ************************************************.(((.((((.((((((((((((...)))))....((((.((..((((...((((.(((....))).))))..........((((((...))))))....))))..)).))))..((((......))))))))))).)))).))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060662 9x160_0-2h_embryos_total	SRR060681 Argx9_testes_total	SRR1106729 mixed whole adult body	SRR060671 9x160_males_carcasses_total	SRR060663 160_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total
.............................................................GTGGACGCCTTGATCAGGCATC........................................................................................................................................................................	22	3	1	5.00	5	5	0	0	0	0	0	0
..............................................................TGGACGCCTTGATCAGGCATC........................................................................................................................................................................	21	3	1	2.00	2	2	0	0	0	0	0	0
.............................................................GTAGCCGCCTTGATGACGCATC........................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0
..............................................................TTGGCGCCTTGATGAGGCATC........................................................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0
...............................................................TGACGCCTTGATCAGGCATC........................................................................................................................................................................	20	3	2	0.50	1	1	0	0	0	0	0	0
........................TGGTGGGTATTAGAACAA.................................................................................................................................................................................................................	18	2	6	0.33	2	0	1	1	0	0	0	0
...........................................................................................................................................................................................................................TTCCGATACTGTACTGGTAGA...........	21	3	3	0.33	1	1	0	0	0	0	0	0
...............................................................TGGCGCCTTGATCAGGCATC........................................................................................................................................................................	20	3	4	0.25	1	1	0	0	0	0	0	0
........................TGGTGGGTATTAGAACAAC................................................................................................................................................................................................................	19	3	20	0.20	4	0	2	0	0	0	1	1
..........................................................................TAAGGAATCGCCTTCTTCTC.............................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	1	0	0
......................................................................................TCCGCCTCACGAATGA.....................................................................................................................................................	16	2	20	0.10	2	0	0	0	2	0	0	0
......................................................................................TCCGCCTCACGAATTACC...................................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:2312980-2313230 +	dvi_9761	TCAAAAAGATATTGAGGATCAGGAACGACCCATACTCTTGTTTTCAGCCAAGTTGCACAAACATCAGCGGAACTATTCCGTAGCTGAAGAGGAGTGCTT---------ACTGGCCATAAATATGTTCAGACCCTATATAGAAGGGATGCCTTTCACATGTATCACTGTTCACGCCATCTTATAATGGCTGATGTCTGTGAAGCACCTAAGCGGGAGAGT--------------TGCATCCGCAAGGCTATGACTTTACCATCAAGCAACGTAAA
droMoj3	scaffold_6103:3042-3315 +		ACAACTTTCTGAAGATAATGAAGAAAAACCCGTAGCATTCATGTCTAAAAAACTCAGTCGATCTCAGCGTAACTATAGTGTTACAGAGCGTGAATGTCTTGCAGTTATTCTAGCTATAGAAAAGTTTCGTTGCTATTTAGAGCTTCAAGAATTCGAAGTCATTACTGACCACTCCAGCCTCTTGTGGCTGATGAGACAACAAAATGTTTCTGGACGATTAGCTAGATGGATTTTTCGCTTGCAACAGTATAAGTTCACTATGTCGCACCGTAAG
droGri2	scaffold_321:1738-2011 -		CCAAGTTGATTCCGAGGGCGATGAGAGACCGATAGCATTCTTTTCCGCCAAGATGGATAAACACCAAGCAAACTACTCGGTGACGGAGAAAGAATGTCTCGCCGCGGTGTTAGCTGTCGAAAGGTTCAGACCCTACATCGAGATGATGCCGTTCACTGTGATTACAGACCACGCAAGTCTCAAATGGCTTATGTCCTTGCGTGACCTAAACGGACGCTTAGCGAGGTGGTCGTTGCGCCTGCAACGTTTTGATTTTCAAATCGAACACCGAAAA
droWil2	scf2_1100000004900:42482-42713 -		TCAAGAAGATCCAGATGGGGGTGAGAGATCCATCGAATTCTATTCGCACAAATTGAATAAATGTCAACGGAATTAATGTGTCACTGAAAAGGAGTGTTTAGCCTCA---------ATCAAACGGTTTAGGCCGTATATAGAGATGATGCCGTTCACGGTCATTACTGATCATTCGAGTCTAAGGTGGCTAATGTCGCTG----ACCTGGATGGTCGACAAGCGCGATGGTCACTAA-----------------------------AACCGAAAG
dp5	Unknown_group_277:8900-9167 +		AAATTTTG------GAGTGGGAGCACGCCCAGTGGATTTCTTTTCCTCCAAGCTGAACAAACATCAAATAAATTATTCGGTAACGGAGAAAGAATGCTTAGATGCGGTATTGGCGATTGAAAGATTCAGGCCATATGTGGAATTGATGCCGTTCACGGTAATCACCGACCACGCCAGCCTTAAATGGCTAATGTCACTCAAGGACCTGAATGGGCGTCTAGCGAGATGGTCATTGCGGCTGCAGAGGTTCGACTTTGAGATCGAACACCGCAAG
droPer2	scaffold_743:7181-7454 -		GCAATCAGATGAAGATGGCAACGAGGTACCCATCGCTTTTATGTCACGCAAATTGAACCAATGTCAACGTAATTATTCCGTAACCGAAAAAGAGTGTTTGGCCGCGGTCATGTGCGTCAAGAAGTTTAGAGCGTATGTAGAAGGGCATCAGTTTTCCATTATTACCGATCATGCCTCATTAAAATGGCTGATGTCACAGGCTGACCTAAGCTCGAGACTAGCTCGATGGGCACTGAAACTGCAAGGCTTCACCTTTAAGATTTTTCATAGAAAG
droAna3	scaffold_2980:959-1231 -		ACAATGTGATGAAAACGGATACGAACGACCAATCAGTTACA-TTCCAAAAAGCTTAACAAGGCTCAACGAAATTATTCGGTAACCGAATTAGAGTGTTTAGCGGTAGTTTTAGCCATTGATAGATTCAGAATGTACATCGAAGGACACCCCTTCAAGGTGATCACCGATCATGCTAGCTTAAGTTGGTTAATGAAAAAGAACGACTTGAGAGGTAGACTAGAAAGATGGGCTATGAAACTGCAAGGATACCAGTTGACCATAGAGCACCGAAAG
droBip1	scf7180000395610:2774-3047 +		CCAGAAGGACGAAGATAAAGCGGAACGGCCGATCACCTTCTTTTCGGCAAAGCTGCGAGGCGCACAGCTGAATTACAGTGTAACCGAGAAGGAGTGTCTGGCTGCAGTCAAAGCTGTTGAGATGTTCCGTCCCTACATAGAGATGATGCCGTGCACCATCTTGACGGATCACGCGAGCCTTAAGTGGCTGATGTCTTTTAAAAATTTGGAAGGGAGACTGGCCAGATGGTTTCTAGCGCTACAGCCCTACCAGTTTAACATCGAACATCGGAAA
droKik1	scf7180000302379:4831-5104 +		CCAGAAGGATGAGGACAACCAGGAGCAGCCGATAGCCTTCTTCTCGGCGAAGATGAACAAGCACCAGGTGAATTACACCGTCACCGAGAAAGAGTGCCTGGCAGCGCTCCTGGCGATCCGGAAGTTCCGTCCGTATGTGGAAGGGATGCCGTTCACCTGCATCACTGATCACGCCAGCCTGAAGTGGTTGATGTCCATGAAGGACCTATCGGGACGCCTGGCTAGGTGGTCTCTGCAGCTCCAGGGATTCAATTTTAACATTGAGCACCGGAAA
droFic1	scf7180000454176:37063-37320 +		TCAGCGGAATCAGGACGGAGGAGAACAACCGATCGCTTTCTTCTCAACCAAGATGAACAAACACCAGGCCAACTACACGGTCACGGAAAAGGAGTGCCTAGCGGCCATACTAGCCATTCGCATGTTCAGGACGTATGTTGAAGGGATGCCGTTCACGTGCATCACTGATCAAGA---TCTCAAATGGCTGATGACAAT----------TCCGGACGACTTGAAAGGTGGTCTCTGCAGCTGCTGGGCTA---TTATAACATCGAGCATCGCAAA
droEle1	scf7180000490680:8891-9164 +		CCAGCGGGATAAAGACGGCCAGGAGCAACCCATAGCGTTCTTCTCGGCCAAGATGAATTGTCACCAAGTGCACTACACCGTCACCGAAAAAGAATGCCTCGCAGCCCTGCTGGCCATTCGAAAGTTCCGGCCGTATGTGGAAGTAATGCCGTTCACGTGCATCACGGATCATGCCAGCTTGAAGTGGCTCATGTCCATGAAAGACATTTCGGGTCGGCTGGCTCGGTGGTCATTGCAACTCCAGGGATATGACTTCAACATCGAACACAGGAAA
droRho1	scf7180000778443:24369-24642 +		CCAGCGAGACGACGACGGACAAGAGCAGCCAATTGCCTTTTTCTCGGCCAAGATGAATAAACATCAGGTAAATTACACCGTGACCGAGAAAGAGTGTCTCGCGGCGCTCATGGCCATTCGGAAGTTCCGGCCATATGTCGAAGGGATGCCATTCACCTGTATCACAGATCATGCCAGCTTGAAGTGGCTCATGTCCATGAAGGATCTGTCGGGACGTTTGGCGAGTTGGTCGCTGCAGCTTCAAGGGTTCCACTTCAACATCGAGCACCGAAAA
droBia1	scf7180000298016:584-855 -		TCAGCGGAACCAGGATGGAGACGAGCAACC-ATCGCGTTCTTCTCAGCCAAGATGAACAATCACCAGGTGAATTACTCGGTCACTGAAAAGGAGTGTCTGGCGACC-TTCTAGCCATCCTGAAGTTCAAACCGTACGTGAATGGGATGCCGTTCACTTGTATCACTGATCACTCCAGCCTTAAGTGGTTGATGACGATAAAGGATCTGTCCGGACGATTCGCAAGGTGGTCTCTCCAGCTGCAGGGCTACGATTTCAGCACTGAACATCGCAAA
droTak1	scf7180000415476:9838-10111 +		TCAGCGGGACCAGGACAGAGATGAGCAACCCATCGCGTTCTTCTCGTCCAAGATGAACAAGTACCAGGTGAACTACTCGGTCACGGAGAAGGAGTGTCTGGCATCCATCCTGGCCATTCAAAAGTTCAGACCTTATGTGGAAGGGATGCCGTTCACATGCATAACCGATCACGCCAGCCTGAAGTGGTTGATGACGATGAAGGATCTGTCAGGACGACTCGCGAGATGGTCTCTCCAGCTGCAGGGTTACGATTTCGACATTGAGCATCGAAAA
droEug1	scf7180000407987:8972-9242 -		TCAGCGAGACGACGACGGACAAGAGCAGCCAATTGCCTTTTTCTCGGCCAAGATGAATAACCATCAGGTTAACTACACCGTAACCGAGAAAGAGTGCGTTGCAACGCTCATGGCCATCCGCAAGTTCAGGCCATACGTCGAAGGGATACCATTCACCTGCGTCACTGACCATGCCAGTTCGAAGTAGCTCATGTCCATGAAAGATCTGTCGGGACGGTTGGCGAGGTGG---CTACAGCTTCAAGGATTCCACTTCAACATCGAGCACAGGAAA
dm3	chrU:8631187-8631381 +		TTAAGTATCTGAAGACGGTAAGGAGCGTCCTATCGCCTTCGTCTTAAAGAAGCTGAACAAAGGTCAGCGCAATTATACAGTTACCGAGCAGGAATGTTTGGCCGCTATAGTAGCTCTCAAGAACTTCCGAGCATACGTGGAAGGACTCCCATTTAAGATAATAACCGACCATGCTTCGCTTAAGTGGTTGATGTC-------------------------------------------------------------------------------
droSim2	node_97093:20-186 -		-----------------------------------------------------------------------------------------------------------TACTTGCCATCGAAAAGTTCCGGCCCTACGTGGAACTGATGCAGTTCACGGTCATCACCGACCACGCCAGTCTGAAGTGGCTGATGACCATGAAAGACCTTAGTGGGCGCCTGGCACGATGGTCACTCAGGTTGCAGAGCTTCGACTTCCAGATAGCGCACCGGAAG
droSec2	scaffold_1030:2332-2526 +		ACAAGTGTCTGAAGAAGGTGACGAGCGTCCTATCGCTTTCGTTTCGAAGAAGCTGAACAAAGCACAACGAAATTATACCGTCACAGAGCAGGAGTGTTTGGCCGCAATAGTAGCTCTCAAAAACTTCAGAGCATATGTGGAAGGACTCCCTTTTAAAATAATAACCGACCATGCTTCGCTCAAGTGGCTAATGTC-------------------------------------------------------------------------------
droYak3	v2_chrUn_2949:190-463 -		CCAATACGACGAGGAAAAGAACGAACGTCCGATTGCCTTCTTCTCCGCAAAGCTAAACAAACATCAGATAAATTATTCTGTGACGGAGAAGGAGTGCTTGGCAGCCGTACTTGCCATCGAAAAGTTCCGGCCCTACGTGGAACTGATGCAGTTCACGGTCATCACCGACCACGCCAGTCTGAAGTGGCTGATGACCATGAAAGACCTTAGTGGGCGCCTGGCACGATGGTCACTCAGGTTGCAGAGCTTCGACTTCCAGATAGCGCACCGGAAA
droEre2	scaffold_4845:1405052-1405325 -		CCAATATGACGAGGAGAAGGAGGAGCATCCGATTGCCTTTTTTTCTGCAAAGTTGAATAAACATCAAATTAATTATTCTGTTACAGAAAAGGAGTGCTTTGCAGCCGTACTTGCCAACGAGAAATTTAAGCCTTATGTGGCACTGCAGCAGTTCACAGTCATCACCGACCATGCCAGTCTTAAGTGGCTGATGACCATGAAATACCTTAATGGGCCCCTGGCGCGATGGTCATTAAGGCTGCAGAGCTTCGATTTCCAGATAGAGCACTGGAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TCAAAAAGATATTGAGGATCAGGAACGACCCATACTCTTGTTTTCAGCCAAGTTGCACAAACATCAGCGGAACTATTCCGTAGCTGAAGAGGAGTGCTT---------ACTGGCCATAAATATGTTCAGACCCTATATAGAAGGGATGCCTTTCACATGTATCACTGTTCACGCCATCTTATAATGGCTGATGTCTGTGAAGCACCTAAGCGGGAGAGT--------------TGCATCCGCAAGGCTATGACTTTACCATCAAGCAACGTAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........TATTGAGGATCAGGAACGACCCATACTC.............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACAACTTTCTGAAGATAATGAAGAAAAACCCGTAGCATTCATGTCTAAAAAACTCAGTCGATCTCAGCGTAACTATAGTGTTACAGAGCGTGAATGTCTTGCAGTTATTCTAGCTATAGAAAAGTTTCGTTGCTATTTAGAGCTTCAAGAATTCGAAGTCATTACTGACCACTCCAGCCTCTTGTGGCTGATGAGACAACAAAATGTTTCTGGACGATTAGCTAGATGGATTTTTCGCTTGCAACAGTATAAGTTCACTATGTCGCACCGTAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAGA..........................................................................................................................................................	27	8	3.13	25	24	0	0	0	1	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATA............................................................................................................................................................	25	8	1.63	13	12	0	0	0	1	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCT...............................................................................................................................................................	22	8	1.50	12	7	1	0	0	4	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAGAA.........................................................................................................................................................	28	8	1.50	12	12	0	0	0	0	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAG...........................................................................................................................................................	26	8	1.38	11	11	0	0	0	0	0
.........................................................................TATAGTGTTACAGAGCGTGAATGTC................................................................................................................................................................................	25	11	1.00	11	1	7	0	0	0	3
.............................................................................................ATGTCTTGCAGTTATTCTAGCTAT.............................................................................................................................................................	24	8	0.88	7	7	0	0	0	0	0
.................................................................................................................................................................TTACTGACCACTCCAGCCTCTTGTGGC......................................................................................	27	6	0.83	5	3	0	0	0	2	0
........................................................................................................................................................TCGAAGTCATTACTGACCACTCCAGCC...............................................................................................	27	6	0.83	5	2	0	0	0	3	0
........................................ATGTCTAAAAAACTCAGTCGATCTCAGC..............................................................................................................................................................................................................	28	9	0.78	7	4	0	0	0	3	0
.........................................................................TATAGTGTTACAGAGCGTGAATGTCT...............................................................................................................................................................................	26	11	0.73	8	2	2	0	0	3	1
.............................................................................................................................................GCTTCAAGAATTCGAAGTCATTACTGACC........................................................................................................	29	9	0.56	5	4	0	0	0	1	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAGAAA........................................................................................................................................................	29	8	0.50	4	4	0	0	0	0	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTA..............................................................................................................................................................	23	8	0.50	4	4	0	0	0	0	0
.............................................................................................ATGTCTTGCAGTTATTCTAGC................................................................................................................................................................	21	8	0.50	4	2	0	0	0	2	0
..............................................................................................TGTCTTGCAGTTATTCTAGCTATAGAA.........................................................................................................................................................	27	8	0.38	3	3	0	0	0	0	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTACT............................................................................................................	26	9	0.33	3	1	0	0	0	2	0
.......TCTGAAGATAATGAAGAAAAACCCG..................................................................................................................................................................................................................................................	25	6	0.33	2	1	0	0	0	1	0
.........................................TGTCTAAAAAACTCAGTCGATCTCAGC..............................................................................................................................................................................................................	27	9	0.33	3	3	0	0	0	0	0
........................................ATGTCTAAAAAACTCAGTCGATCT..................................................................................................................................................................................................................	24	9	0.33	3	3	0	0	0	0	0
........CTGAAGATAATGAAGAAAAACCCGTAGCA.............................................................................................................................................................................................................................................	29	6	0.33	2	2	0	0	0	0	0
........................................................................................................................................................TCGAAGTCATTACTGACCACTCCAGCCT..............................................................................................	28	6	0.33	2	1	0	0	0	1	0
.............................................................................................................................................GCTTCAAGAATTCGAAGTCATTACT............................................................................................................	25	9	0.33	3	2	0	0	0	1	0
...........................................................................TAGTGTTACAGAGCGTGAATGTCT...............................................................................................................................................................................	24	11	0.27	3	0	1	0	0	2	0
..............................................................................................TGTCTTGCAGTTATTCTAGCTATAGAAA........................................................................................................................................................	28	8	0.25	2	2	0	0	0	0	0
..............................................................................................TGTCTTGCAGTTATTCTAGCT...............................................................................................................................................................	21	8	0.25	2	2	0	0	0	0	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCC...............................................................................................................................................................	22	8	0.25	2	0	0	0	0	2	0
..............................................AAAAAACTCAGTCGATCTCAGCGT............................................................................................................................................................................................................	24	9	0.22	2	1	0	0	0	0	1
........................................ATGTCTAAAAAACTCAGTCGATCTC.................................................................................................................................................................................................................	25	9	0.22	2	2	0	0	0	0	0
........................................ATGTCTAAAAAACTCAGTCGATCTCA................................................................................................................................................................................................................	26	9	0.22	2	2	0	0	0	0	0
................................................................................................................................................TCAAGAATTCGAAGTCATTACTGACCAC......................................................................................................	28	9	0.22	2	2	0	0	0	0	0
.............................................................................................................................................GCTTCAAGAATTCGAAGTCATTACC............................................................................................................	25	9	0.22	2	0	0	0	0	2	0
..............................................AAAAAACTCAGTCGATCTCAGCGTAAC.........................................................................................................................................................................................................	27	9	0.22	2	1	0	0	0	1	0
........................................ATGTCTAAAAAACTCAGTCGATCTCAG...............................................................................................................................................................................................................	27	9	0.22	2	1	0	0	0	0	1
...............................................................TCAGCGTAACTATAGTGTTACAGAGC.........................................................................................................................................................................................	26	10	0.20	2	0	0	0	0	2	0
.............................................................................GTGTTACAGAGCGTGAATGTCTTG.............................................................................................................................................................................	24	11	0.18	2	1	1	0	0	0	0
..........................................................................ATAGTGTTACAGAGCGTGAATGT.................................................................................................................................................................................	23	11	0.18	2	0	2	0	0	0	0
...........................................................................TAGTGTTACAGAGCGTGAATGTC................................................................................................................................................................................	23	11	0.18	2	0	1	0	0	0	1
.........................................................................................................................AAGTTTCGTTGCTATTTAGAGCTTCAA..............................................................................................................................	27	11	0.18	2	2	0	0	0	0	0
.......................................................................................................................................................TTCGAAGTCATTACTGACCACTCCAGCC...............................................................................................	28	6	0.17	1	1	0	0	0	0	0
......................................................................................................................................................................GACCACTCCAGCCTCTTGTGG.......................................................................................	21	6	0.17	1	1	0	0	0	0	0
............AGATAATGAAGAAAAACCCGTAGC..............................................................................................................................................................................................................................................	24	6	0.17	1	1	0	0	0	0	0
.....................................................................................................................................................................TGACCACTCCAGCCTCTTGTGGCTGA...................................................................................	26	6	0.17	1	0	0	0	0	1	0
................................................................................................................................................................................GCCTCTTGTGGCTGATGAGACA............................................................................	22	6	0.17	1	1	0	0	0	0	0
.............GATAATGAAGAAAAACCCGTAGCA.............................................................................................................................................................................................................................................	24	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................................TACTGACCACTCCAGCCTCTTGTGGC......................................................................................	26	6	0.17	1	0	0	0	0	1	0
.................................................................................................................................................................................CCTCTTGTGGCTGATGAGACA............................................................................	21	6	0.17	1	1	0	0	0	0	0
........................................................................................................................................................TCGAAGTCATTACTGACCACTCCAGC................................................................................................	26	6	0.17	1	0	0	0	0	1	0
.......TCTGAAGATAATGAAGAAAAACCCGT.................................................................................................................................................................................................................................................	26	6	0.17	1	1	0	0	0	0	0
............AGATAATGAAGAAAAACCCGTAGCAT............................................................................................................................................................................................................................................	26	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................TCATTACTGACCACTCCAGCCTCTTG..........................................................................................	26	6	0.17	1	0	0	0	0	1	0
......................................................................................................................................................................GACCACTCCAGCCTCTTGTGGC......................................................................................	22	6	0.17	1	0	0	0	0	1	0
........CTGAAGATAATGAAGAAAAACCCGT.................................................................................................................................................................................................................................................	25	6	0.17	1	1	0	0	0	0	0
.................................................................................................................................................................TTACTGACCACTCCAGCCTCTTG..........................................................................................	23	6	0.17	1	1	0	0	0	0	0
...................................................................................................................................................................ACTGACCACTCCAGCCTCTTGTGGC......................................................................................	25	6	0.17	1	0	0	0	0	1	0
..........GAAGATAATGAAGAAAAACCCGTAGC..............................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	1	0
..................TGAAGAAAAACCCGTAGCATT...........................................................................................................................................................................................................................................	21	6	0.17	1	1	0	0	0	0	0
....................................................................................................................................................................CTGACCACTCCAGCCTCTTGTGGCC.....................................................................................	25	6	0.17	1	0	0	0	0	1	0
....................................................................................................................................................................................CTTGTGGCTGATGAGACAACA.........................................................................	21	7	0.14	1	1	0	0	0	0	0
........................................................................................................................................................TCGAAGTCATTACTGACCACTCCA..................................................................................................	24	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................................TCTTGTGGCTGATGAGACAACA.........................................................................	22	7	0.14	1	1	0	0	0	0	0
..........................................................................................TGAATGTCTTGCAGTTATTCTAGCT...............................................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
.......................................CATGTCTAAAAAACTCAGTCGATCT..................................................................................................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
...........................................................................................................TTCTAGCTATAGAAAAGTTTCGTTGCC............................................................................................................................................	27	8	0.13	1	0	0	0	0	1	0
..........................................................................................................ATTCTAGCTATAGAAAAGTTTCGTTGC.............................................................................................................................................	27	8	0.13	1	0	0	0	0	1	0
...................................................................................................TGCAGTTATTCTAGCTATAGAAAAGT.....................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0
......................................TCATGTCTAAAAAACTCAGTCGATCT..................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	1	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAGC..........................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
......................................TCATGTCTAAAAAACTCAGTCGATCTC.................................................................................................................................................................................................................	27	8	0.13	1	0	0	0	0	1	0
..................................................................................................TTGCAGTTATTCTAGCTATAGAAAAGT.....................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0
..............................................................................................TGTCTTGCAGTTATTCTAGCTA..............................................................................................................................................................	22	8	0.13	1	1	0	0	0	0	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAA...........................................................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
.............................................................................................ATGTCTTGCAGTTATTCTAGCTATAGG..........................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
.....................................................................................GAGCGTGAATGTCTTGCAGTTATTC....................................................................................................................................................................	25	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTACTGAC.........................................................................................................	29	9	0.11	1	1	0	0	0	0	0
........................................................................................................................................TTAGAGCTTCAAGAATTCGAAGTC..................................................................................................................	24	9	0.11	1	0	0	0	0	1	0
.............................................................................................................................................GCTTCAAGAATTCGAAGTCATTACTG...........................................................................................................	26	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTACTGA..........................................................................................................	28	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTAC.............................................................................................................	25	9	0.11	1	1	0	0	0	0	0
..............................................AAAAAACTCAGTCGATCTCAGCGTAA..........................................................................................................................................................................................................	26	9	0.11	1	1	0	0	0	0	0
........................................ATGTCTAAAAAACTCAGTCGATCTCAT...............................................................................................................................................................................................................	27	9	0.11	1	1	0	0	0	0	0
..........................................GTCTAAAAAACTCAGTCGATCTCAGCGT............................................................................................................................................................................................................	28	9	0.11	1	1	0	0	0	0	0
............................................CTAAAAAACTCAGTCGATCTCAGCGT............................................................................................................................................................................................................	26	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTACA............................................................................................................	26	9	0.11	1	1	0	0	0	0	0
...........................................TCTAAAAAACTCAGTCGATCTCAGCGTA...........................................................................................................................................................................................................	28	9	0.11	1	0	0	0	0	1	0
.................................................................................................................................................CAAGAATTCGAAGTCATTACTGACC........................................................................................................	25	9	0.11	1	0	0	0	0	1	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTACTCC..........................................................................................................	28	9	0.11	1	1	0	0	0	0	0
.............................................................................................................................................................................................................GTTTCTGGACGATTAGCTAGATGGA............................................	25	9	0.11	1	1	0	0	0	0	0
..........................................GTCTAAAAAACTCAGTCGATCTCAGCG.............................................................................................................................................................................................................	27	9	0.11	1	1	0	0	0	0	0
.............................................TAAAAAACTCAGTCGATCTCAGCG.............................................................................................................................................................................................................	24	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................AGCTTCAAGAATTCGAAGTCATTACC............................................................................................................	26	9	0.11	1	0	0	0	0	1	0
...........................................TCTAAAAAACTCAGTCGATCTCAGC..............................................................................................................................................................................................................	25	9	0.11	1	1	0	0	0	0	0
.....................................................TCAGTCGATCTCAGCGTAACTATAGTGA.................................................................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
...................................................ACTCAGTCGATCTCAGCGTAACTATA.....................................................................................................................................................................................................	26	10	0.10	1	1	0	0	0	0	0
........................................................GTCGATCTCAGCGTAACTATAGTGT.................................................................................................................................................................................................	25	10	0.10	1	1	0	0	0	0	0
................................................AAAACTCAGTCGATCTCAGCGTAACTAT......................................................................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
......................................................CAGTCGATCTCAGCGTAACTATAGTGT.................................................................................................................................................................................................	27	10	0.10	1	1	0	0	0	0	0
..............................................................................................................TAGCTATAGAAAAGTTTCGTTGC.............................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0
.....................................................TCAGTCGATCTCAGCGTAACTATAGTG..................................................................................................................................................................................................	27	10	0.10	1	1	0	0	0	0	0
.................................................AAACTCAGTCGATCTCAGCGTAAC.........................................................................................................................................................................................................	24	10	0.10	1	1	0	0	0	0	0
.................................................................................................................................TTGCTATTTAGAGCTTCAAGAATTCG.......................................................................................................................	26	10	0.10	1	1	0	0	0	0	0
...........................................................GATCTCAGCGTAACTATAGTGTTACAGA...........................................................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
..AACTTTCTGAAGATAATGAAGA..........................................................................................................................................................................................................................................................	22	10	0.10	1	1	0	0	0	0	0
.................................................................................................................................TTGCTATTTAGAGCTTCAAGAATTCGA......................................................................................................................	27	10	0.10	1	1	0	0	0	0	0
.....................................................TCAGTCGATCTCAGCGTAACTATAGTGT.................................................................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
..................................................AACTCAGTCGATCTCAGCGTAAC.........................................................................................................................................................................................................	23	10	0.10	1	1	0	0	0	0	0
.................................................AAACTCAGTCGATCTCAGCGTAACT........................................................................................................................................................................................................	25	10	0.10	1	1	0	0	0	0	0
...................................................ACTCAGTCGATCTCAGCGTAAC.........................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	1	0
.........................................................TCGATCTCAGCGTAACTATAGTGT.................................................................................................................................................................................................	24	10	0.10	1	1	0	0	0	0	0
...............................................................................................................................................................................................................TTCTGGACGATTAGCTAGATGGATTT.........................................	26	10	0.10	1	1	0	0	0	0	0
................................................AAAACTCAGTCGATCTCAGCGTAACTA.......................................................................................................................................................................................................	27	10	0.10	1	1	0	0	0	0	0
.........................................................................TATAGTGTTACAGAGCGTGA.....................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1
..........................................................................................................................AGTTTCGTTGCTATTTAGAGCTTCAA..............................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
...........................................................................TAGTGTTACAGAGCGTGAATGT.................................................................................................................................................................................	22	11	0.09	1	1	0	0	0	0	0
.....................................................................................GAGCGTGAATGTCTTGCAGTTATT.....................................................................................................................................................................	24	11	0.09	1	1	0	0	0	0	0
...........................................................................................................................GTTTCGTTGCTATTTAGAGCTTC................................................................................................................................	23	11	0.09	1	1	0	0	0	0	0
.......................................................................ACTATAGTGTTACAGAGCGTGAATGTC................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	0	1
............................................................................AGTGTTACAGAGCGTGAATGTCTTGC............................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0
.........................................................................................................................AAGTTTCGTTGCTATTTAGAGCT..................................................................................................................................	23	11	0.09	1	1	0	0	0	0	0
................................................................................TTACAGAGCGTGAATGTCTTGC............................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0
.......................................................................ACTATAGTGTTACAGAGCGTGAA....................................................................................................................................................................................	23	11	0.09	1	1	0	0	0	0	0
..........................................................................ATAGTGTTACAGAGCGTGA.....................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	1

droGri2

CCAAGTTGATTCCGAGGGCGATGAGAGACCGATAGCATTCTTTTCCGCCAAGATGGATAAACACCAAGCAAACTACTCGGTGACGGAGAAAGAATGTCTCGCCGCGGTGTTAGCTGTCGAAAGGTTCAGACCCTACATCGAGATGATGCCGTTCACTGTGATTACAGACCACGCAAGTCTCAAATGGCTTATGTCCTTGCGTGACCTAAACGGACGCTTAGCGAGGTGGTCGTTGCGCCTGCAACGTTTTGATTTTCAAATCGAACACCGAAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................ATAAACACCAAGCAAACTACT.....................................................................................................................................................................................................	21	8	0.13	1	1	0
......................................TCTTTTCCGCCAAGATGGATA.......................................................................................................................................................................................................................	21	9	0.11	1	1	0
.....................................................................................................................................TACATCGAGATGATGCCGTTC........................................................................................................................	21	10	0.10	1	0	1
............................................................................................................................................................................................................................GCGAGGTGGTCGTTGCGCCTG.................................	21	10	0.10	1	1	0
............................................................................................................................................................................................TTATGTCCTTGCGTGACCT...................................................................	19	10	0.10	1	1	0

droWil2

TCAAGAAGATCCAGATGGGGGTGAGAGATCCATCGAATTCTATTCGCACAAATTGAATAAATGTCAACGGAATTAATGTGTCACTGAAAAGGAGTGTTTAGCCTCA---------ATCAAACGGTTTAGGCCGTATATAGAGATGATGCCGTTCACGGTCATTACTGATCATTCGAGTCTAAGGTGGCTAATGTCGCTG----ACCTGGATGGTCGACAAGCGCGATGGTCACTAA-----------------------------AACCGAAAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

AAATTTTG------GAGTGGGAGCACGCCCAGTGGATTTCTTTTCCTCCAAGCTGAACAAACATCAAATAAATTATTCGGTAACGGAGAAAGAATGCTTAGATGCGGTATTGGCGATTGAAAGATTCAGGCCATATGTGGAATTGATGCCGTTCACGGTAATCACCGACCACGCCAGCCTTAAATGGCTAATGTCACTCAAGGACCTGAATGGGCGTCTAGCGAGATGGTCATTGCGGCTGCAGAGGTTCGACTTTGAGATCGAACACCGCAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGC...................................	23	3	126.00	378	1	318	37	0	18	1	3	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGG....................................	22	3	82.67	248	0	237	5	0	6	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCT..................................	24	3	30.00	90	0	89	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGC......................................	20	3	8.00	24	0	13	7	0	4	0	0	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCGGC...................................	22	3	7.67	23	0	23	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCTG.................................	25	3	6.67	20	0	20	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCG.....................................	21	3	6.00	18	0	14	1	0	1	1	1	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCTGC................................	26	3	5.33	16	0	15	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTG.......................................	19	3	5.00	15	0	14	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCGG....................................	21	3	4.67	14	0	14	0	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGG....................................................................................................................	22	3	4.00	12	0	12	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGGGCGTC........................................................	25	3	3.67	11	0	10	0	0	1	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGGTA..................................................................................................................	24	3	3.33	10	0	9	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGA....................................	22	4	2.00	8	0	7	1	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACG.....................................................................................................................	21	3	2.00	6	0	5	1	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGGT...................................................................................................................	23	3	2.00	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGATGGTCATTGCGGCTGCAGA.............................	23	3	1.67	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGGGC...........................................................	22	3	1.67	5	0	4	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATGTCACTCAAGGACCTGAATGG.............................................................	23	3	1.33	4	0	3	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................TGTCACTCAAGGACCTGAATGGGCGTC........................................................	27	3	1.33	4	0	3	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCGGCT..................................	23	3	1.33	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGT...................................	23	3	1.33	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGGTAA.................................................................................................................	25	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGGGCGTCT.......................................................	26	3	1.00	3	0	2	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGCTAATGTCACTCAAGGACCTGA.................................................................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGGTCATTGCGGCTGCAGAGG...........................	21	3	1.00	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCA..................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGAGATGGTCATTGCGGCTGC................................	21	3	1.00	3	0	2	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCG.....................................	20	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGATGGTCATTGCGGCTGCAGAGG...........................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0
................................................................................TAACGGAGAAAGAATGCTTAGATGCGG.......................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................ATTGGCGATTGAAAGATTCAGGC...............................................................................................................................................	23	4	0.75	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................GAAAGATTCAGGCCATATGTGGA.....................................................................................................................................	23	4	0.75	3	0	1	0	0	0	0	0	2	0	0
.............................................................................................................................TCAGGCCATATGTGGAATTGATGCC............................................................................................................................	25	3	0.67	2	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGA...................................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGGG............................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCGGCTG.................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TAATGTCACTCAAGGACCTGAATGGG............................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCTGCAG..............................	28	3	0.67	2	0	1	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................CACTCAAGGACCTGAATGGGC...........................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGATGGTCATTGCGGCTGCAGAG............................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGATGGTCATTGCGGCTGCAG..............................	22	3	0.67	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................................................TGTGGAATTGATGCCGTTCACGGT...................................................................................................................	24	3	0.67	2	0	1	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................ATGGTCATTGCGGCTGCAGAGGT..........................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ATGGTCATTGCGGCTGCAGAGG...........................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGCTAATGTCACTCAAGGACCTG..................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TCAGGCCATATGTGGAATTGATG..............................................................................................................................	23	3	0.67	2	0	1	0	0	1	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGA....................................................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGCGG....................................	20	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGCGGC...................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGCTAATGTCACTCAAGGACCTGAA................................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCTT.................................	25	3	0.67	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................................................TGTGGAATTGATGCCGTTCACGGTA..................................................................................................................	25	3	0.67	2	0	1	1	0	0	0	0	0	0	0
.............................................CTCCAAGCTGAACAAACATCAAATAAAT.........................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......TG------GAGTGGGAGCACGCCCAGTGGAT.............................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................TATTGGCGATTGAAAGATTCAGG................................................................................................................................................	23	4	0.50	2	0	2	0	0	0	0	0	0	0	0
......TG------GAGTGGGAGCACGCCCAGTGGATT............................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGCGA....................................	20	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................TGGCGATTGAAAGATTCAGGCCATA...........................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	2	0	0
...............AGTGGGAGCACGCCCAGTGGATT............................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGGTAAA................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CTAATGTCACTCAAGGACCTGAAAA..............................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................GGAATTGATGCCGTTCACGGTA..................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGCGGCTG.................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................ATGTGGAATTGATGCCGTTCACG.....................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TGGAATTGATGCCGTTCACGGTA..................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCGAGATGGTCATTGCGGCTGCAG..............................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................CACTCAAGGACCTGAATGGGCGC.........................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCGT....................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGGTCATTGCGGCTGCAGAGGTTCG.......................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGT.............................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCA.....................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................TTCAGGCCATATGTGGAATTGATGCC............................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCGAGATGGTCATTGCGG....................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TATGTGGAATTGATGCCGTTCACGG....................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCAA.................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................ATATGTGGAATTGATGCCGTTCA.......................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CACTCAAGGACCTGAATGGGCGTC........................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGGTAATCAC.............................................................................................................	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGTCACTCAAGGACCTGAATGGG............................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TCGACTTTGAGATCGAACACCGCA..	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................CACTCAAGGACCTGAATGGGCGT.........................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGG.............................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGATGGTCATTGCGGCTGCA...............................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCACTCAAGGACCTGAATGGGCG..........................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................CAGGCCATATGTGGAATTGATGC.............................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCTGCA...............................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGCTAATGTCACTCAAGGACCTGAAAA..............................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................GATGCCGTTCACGGTAATCACCGAC.........................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CACTCAAGGACCTGAATGGGCG..........................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGCGGCT..................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGA......................................	20	3	0.33	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................GCTAATGTCACTCAAGGACCTGAATGG.............................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGCGGCC..................................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGTCTAGCGAGATGGTCATTGCGG....................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TGGAATTGATGCCGTTCACGGTAA.................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACTCAAGGACCTGAATGGG............................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GATGGTCATTGCGGCTGCAGA.............................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTAGCGAGATGGTCATTGCGGCTGC................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCGAGATGGTCATTGCGGCTGC................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AATGTCACTCAAGGACCTGAATGG.............................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGAGATGGTCATTGCGGCTGCAGAGG...........................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TAATGTCACTCAAGGACCTG..................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGGGCGTCTAGCGAGATGGTCATTGC......................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGTCACTCAAGGACCTGAATGGGC...........................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................TCTTTTCCTCCAAGCTGAACAAACA...................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTGGAATTGATGCCGTTCACGGTAA.................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TAAATGGCTAATGTCACTCAAGGACC....................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGCTAATGTCACTCAAGGACCTGAA................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TCAGGCCATATGTGGAATT..................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCACGGTAATCACCGACCACG.....................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGAGATGGTCATTGCGGCTGCAGA.............................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGAC..................................	24	3	0.33	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GTCATTGCGGCTGCAGAGGTTCGA......................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TCAGGCCATATGTGGAATTGATGCCG...........................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCACGGTAAAA...............................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGCGAGATGGTCATTGG......................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAGATGGTCATTGCGGCTG.................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GTCACTCAAGGACCTGAATGGGCGTC........................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CACTCAAGGACCTGAATGGGCGTCTA......................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCGAGATGGTCATTGCGGCTG.................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................GTGGAATTGATGCCGTTCAC......................................................................................................................	20	3	0.33	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................TCTAGCGAGATGGTCATTGCGGCTA.................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TGGAATTGATGCCGTTCACGG....................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGTCTAGCGAGATGGTCATTGC......................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATGGCTAATGTCACTCAAGGACC....................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTGGAATTGATGCCGTTCACGG....................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGCGGTATTGGCGATTGAAAGAT.....................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTAATGTCACTCAAGGAC.....................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCAAGGACCTGAATGGGCGTCT.......................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGAGATCGAACACCGCAAG	19	4	0.25	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................CAAGGACCTGAATGGGCG..........................................................	18	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGCGGTATTGGCGATTGAAAGATA....................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGCGGTATTGGCGATTGAAAGATTCAGG................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGAATGGGCGTCTAGCGAGATGGTA...........................................	25	4	0.25	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................TGCGGTATTGGCGATTGAAAGA......................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGCTAATGTCACTCAAGGACC....................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................AGATTCAGGCCATATGTGGAA....................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................GAAAGATTCAGGCCATATGTGGAAT...................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGAGATGGTCATTGCGGTA..................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGGACCTGAATGGGCGTCTAG.....................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCAATCAGATGAAGATGGCAACGAGGTACCCATCGCTTTTATGTCACGCAAATTGAACCAATGTCAACGTAATTATTCCGTAACCGAAAAAGAGTGTTTGGCCGCGGTCATGTGCGTCAAGAAGTTTAGAGCGTATGTAGAAGGGCATCAGTTTTCCATTATTACCGATCATGCCTCATTAAAATGGCTGATGTCACAGGCTGACCTAAGCTCGAGACTAGCTCGATGGGCACTGAAACTGCAAGGCTTCACCTTTAAGATTTTTCATAGAAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................TTAGAGCGTATGTAGAAGGGCATA.............................................................................................................................	24	20	0.20	4	4	0	0	0	0	0
........................................................................................................................GAAGTTTAGAGCGTATGTAGAAGGGC................................................................................................................................	26	7	0.14	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................TGGGCACTGAAACTGCAAGGCTA.........................	23	9	0.11	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................AGCTCGATGGGCACTGAAACTGCAAG.............................	26	10	0.10	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TAGCTCGATGGGCACTGAAA....................................	20	16	0.06	1	0	1	0	0	0	0
...................................................................................................................................................................................................................TCGAGACTAGCTCGATGGGCAC.........................................	22	16	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................TACCGATCATGCCTCATTAAAATG........................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................CCGTAACCGAAAAAGAGTGTTTGG.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...............................................................................GTAACCGAAAAAGAGTGTTTGGC............................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................TAAAATGGCTGATGTCACAGGC.........................................................................	22	20	0.05	1	0	1	0	0	0	0
................................TCGCTTTTATGTCACGCAAATTGAA.........................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................TTACCGATCATGCCTCATTAAAA..........................................................................................	23	20	0.05	1	0	1	0	0	0	0

droAna3

ACAATGTGATGAAAACGGATACGAACGACCAATCAGTTACA-TTCCAAAAAGCTTAACAAGGCTCAACGAAATTATTCGGTAACCGAATTAGAGTGTTTAGCGGTAGTTTTAGCCATTGATAGATTCAGAATGTACATCGAAGGACACCCCTTCAAGGTGATCACCGATCATGCTAGCTTAAGTTGGTTAATGAAAAAGAACGACTTGAGAGGTAGACTAGAAAGATGGGCTATGAAACTGCAAGGATACCAGTTGACCATAGAGCACCGAAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................TCAGAATGTACATCGAAGGACACC.............................................................................................................................	24	16	0.56	9	2	7	0	0	0	0
.............................................................................................................................TCAGAATGTACATCGAAGGACACCCC...........................................................................................................................	26	16	0.50	8	7	1	0	0	0	0
...........AAAACGGATACGAACGACCAATCAGT.............................................................................................................................................................................................................................................	26	8	0.25	2	2	0	0	0	0	0
.............................................................................................................................TCAGAATGTACATCGAAGGACACCC............................................................................................................................	25	16	0.19	3	1	2	0	0	0	0
.........................................................................................................................AGATTCAGAATGTACATCGAAGGACACC.............................................................................................................................	28	16	0.13	2	2	0	0	0	0	0
.........TGAAAACGGATACGAACGACCAATCAGT.............................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................TACCAGTTGACCATAGAGCACC.....	22	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................AAGGATACCAGTTGACCATAGAGCACC.....	27	20	0.10	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................GGGCTATGAAACTGCAAGGATACCAG.....................	26	10	0.10	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TACCAGTTGACCATAGAGCACCGA...	24	20	0.10	2	1	1	0	0	0	0
......................................................................................................................GATAGATTCAGAATGTACATCGAAGGA.................................................................................................................................	27	16	0.06	1	1	0	0	0	0	0
.........................................................................................................................AGATTCAGAATGTACATCGAAGGAC................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0
................................................................................................................................GAATGTACATCGAAGGACACCCCTT.........................................................................................................................	25	16	0.06	1	1	0	0	0	0	0
.............................................................................................................................TCAGAATGTACATCGAAGGACACCCCC..........................................................................................................................	27	17	0.06	1	0	1	0	0	0	0
..........................................................................................AGAGTGTTTAGCGGTAGTTTTAGA................................................................................................................................................................	24	19	0.05	1	1	0	0	0	0	0
..................................................................................................TAGCGGTAGTTTTAGCCATTG...........................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
.............................................................................................................................................................................................................TTGAGAGGTAGACTAGAAAGATG..............................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................GTTAATGAAAAAGAACGACTTGAGAGG.............................................................	27	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................AACGACTTGAGAGGTAGACTAGAAAG.................................................	26	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................ATACCAGTTGACCATAGAGCACCGA...	25	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................ACTGCAAGGATACCAGTTGACCATA............	25	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TACCAGTTGACCATAGAGCACCGAA..	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................TGCAAGGATACCAGTTGACCATAGAGCAC......	29	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................ACTGCAAGGATACCAGTTGACCATAGAGC........	29	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................ACTGCAAGGATACCAGTTGACC...............	22	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................AAGAACGACTTGAGAGGTAGACTAGAA...................................................	27	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................ATGTACATCGAAGGACACCCCTT.........................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................ACTGCAAGGATACCAGTTGACCATAGA..........	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TGCAAGGATACCAGTTGACCATAGAGC........	27	20	0.05	1	1	0	0	0	0	0

droBip1

CCAGAAGGACGAAGATAAAGCGGAACGGCCGATCACCTTCTTTTCGGCAAAGCTGCGAGGCGCACAGCTGAATTACAGTGTAACCGAGAAGGAGTGTCTGGCTGCAGTCAAAGCTGTTGAGATGTTCCGTCCCTACATAGAGATGATGCCGTGCACCATCTTGACGGATCACGCGAGCCTTAAGTGGCTGATGTCTTTTAAAAATTTGGAAGGGAGACTGGCCAGATGGTTTCTAGCGCTACAGCCCTACCAGTTTAACATCGAACATCGGAAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAGAAGGATGAGGACAACCAGGAGCAGCCGATAGCCTTCTTCTCGGCGAAGATGAACAAGCACCAGGTGAATTACACCGTCACCGAGAAAGAGTGCCTGGCAGCGCTCCTGGCGATCCGGAAGTTCCGTCCGTATGTGGAAGGGATGCCGTTCACCTGCATCACTGATCACGCCAGCCTGAAGTGGTTGATGTCCATGAAGGACCTATCGGGACGCCTGGCTAGGTGGTCTCTGCAGCTCCAGGGATTCAATTTTAACATTGAGCACCGGAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCAGCGGAATCAGGACGGAGGAGAACAACCGATCGCTTTCTTCTCAACCAAGATGAACAAACACCAGGCCAACTACACGGTCACGGAAAAGGAGTGCCTAGCGGCCATACTAGCCATTCGCATGTTCAGGACGTATGTTGAAGGGATGCCGTTCACGTGCATCACTGATCAAGA---TCTCAAATGGCTGATGACAAT----------TCCGGACGACTTGAAAGGTGGTCTCTGCAGCTGCTGGGCTA---TTATAACATCGAGCATCGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCAGCGGGATAAAGACGGCCAGGAGCAACCCATAGCGTTCTTCTCGGCCAAGATGAATTGTCACCAAGTGCACTACACCGTCACCGAAAAAGAATGCCTCGCAGCCCTGCTGGCCATTCGAAAGTTCCGGCCGTATGTGGAAGTAATGCCGTTCACGTGCATCACGGATCATGCCAGCTTGAAGTGGCTCATGTCCATGAAAGACATTTCGGGTCGGCTGGCTCGGTGGTCATTGCAACTCCAGGGATATGACTTCAACATCGAACACAGGAAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAGCGAGACGACGACGGACAAGAGCAGCCAATTGCCTTTTTCTCGGCCAAGATGAATAAACATCAGGTAAATTACACCGTGACCGAGAAAGAGTGTCTCGCGGCGCTCATGGCCATTCGGAAGTTCCGGCCATATGTCGAAGGGATGCCATTCACCTGTATCACAGATCATGCCAGCTTGAAGTGGCTCATGTCCATGAAGGATCTGTCGGGACGTTTGGCGAGTTGGTCGCTGCAGCTTCAAGGGTTCCACTTCAACATCGAGCACCGAAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCAGCGGAACCAGGATGGAGACGAGCAACC-ATCGCGTTCTTCTCAGCCAAGATGAACAATCACCAGGTGAATTACTCGGTCACTGAAAAGGAGTGTCTGGCGACC-TTCTAGCCATCCTGAAGTTCAAACCGTACGTGAATGGGATGCCGTTCACTTGTATCACTGATCACTCCAGCCTTAAGTGGTTGATGACGATAAAGGATCTGTCCGGACGATTCGCAAGGTGGTCTCTCCAGCTGCAGGGCTACGATTTCAGCACTGAACATCGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCAGCGGGACCAGGACAGAGATGAGCAACCCATCGCGTTCTTCTCGTCCAAGATGAACAAGTACCAGGTGAACTACTCGGTCACGGAGAAGGAGTGTCTGGCATCCATCCTGGCCATTCAAAAGTTCAGACCTTATGTGGAAGGGATGCCGTTCACATGCATAACCGATCACGCCAGCCTGAAGTGGTTGATGACGATGAAGGATCTGTCAGGACGACTCGCGAGATGGTCTCTCCAGCTGCAGGGTTACGATTTCGACATTGAGCATCGAAAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCAGCGAGACGACGACGGACAAGAGCAGCCAATTGCCTTTTTCTCGGCCAAGATGAATAACCATCAGGTTAACTACACCGTAACCGAGAAAGAGTGCGTTGCAACGCTCATGGCCATCCGCAAGTTCAGGCCATACGTCGAAGGGATACCATTCACCTGCGTCACTGACCATGCCAGTTCGAAGTAGCTCATGTCCATGAAAGATCTGTCGGGACGGTTGGCGAGGTGG---CTACAGCTTCAAGGATTCCACTTCAACATCGAGCACAGGAAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTAAGTATCTGAAGACGGTAAGGAGCGTCCTATCGCCTTCGTCTTAAAGAAGCTGAACAAAGGTCAGCGCAATTATACAGTTACCGAGCAGGAATGTTTGGCCGCTATAGTAGCTCTCAAGAACTTCCGAGCATACGTGGAAGGACTCCCATTTAAGATAATAACCGACCATGCTTCGCTTAAGTGGTTGATGTC-------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................TTATACAGTTACCGAGCAGGAATG..................................................................................................................................................................................	24	5	7.80	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	6	0	10	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGCT..............................................................................................	22	20	4.45	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	9	0	1	0	3	1	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	7	0	2	0	8	1	4	0	6	4	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	4	0	1	0	0	0	0	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTTAAGT.........................................................................................	27	11	3.73	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	11	0	11	0	0	0	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................TTATACAGTTACCGAGCAGGAATGT.................................................................................................................................................................................	25	5	2.80	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	6	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTTAAG..........................................................................................	26	16	1.75	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	3	1	3	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGC...............................................................................................	21	20	1.65	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	1	2	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
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..............................................................................................................................................................TAATAACCGACCATGCTTCGT...............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CCGCTATAGTAGCTCTCAAGAACT.....................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TCCGAGCATACGTGGAAGGACTC..............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CAGGAATGTTTGGCCGCTATAGTAGCTC..............................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CCGAGCAGGAATGTTTGGCCGCTATA.....................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAAGAACTTCCGAGCATACGTGGA.....................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAAGAACTTCCGAGCATACGTGGAA....................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TACGTGGAAGGACTCCCATTTAAGA....................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

-----------------------------------------------------------------------------------------------------------TACTTGCCATCGAAAAGTTCCGGCCCTACGTGGAACTGATGCAGTTCACGGTCATCACCGACCACGCCAGTCTGAAGTGGCTGATGACCATGAAAGACCTTAGTGGGCGCCTGGCACGATGGTCACTCAGGTTGCAGAGCTTCGACTTCCAGATAGCGCACCGGAAG

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ACAAGTGTCTGAAGAAGGTGACGAGCGTCCTATCGCTTTCGTTTCGAAGAAGCTGAACAAAGCACAACGAAATTATACCGTCACAGAGCAGGAGTGTTTGGCCGCAATAGTAGCTCTCAAAAACTTCAGAGCATATGTGGAAGGACTCCCTTTTAAAATAATAACCGACCATGCTTCGCTCAAGTGGCTAATGTC-------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................AATTATACCGTCACAGAGCAGGAG....................................................................................................................................................................................	24	12	9.08	109	69	1	36	3
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTCA............................................................................................	24	15	6.47	97	72	1	21	3
......................................................................AATTATACCGTCACAGAGCAGGA.....................................................................................................................................................................................	23	13	4.15	54	30	1	21	2
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTC.............................................................................................	23	15	3.87	58	37	0	20	1
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTCAAG..........................................................................................	26	14	3.57	50	43	0	6	1
......................................................................AATTATACCGTCACAGAGCAGGAGT...................................................................................................................................................................................	25	12	2.83	34	19	2	10	3
......................................................................AATTATACCGTCACAGAGCAGG......................................................................................................................................................................................	22	13	2.77	36	18	1	16	1
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTCAA...........................................................................................	25	15	1.93	29	21	0	8	0
.................................................................................................TTGGCCGCAATAGTAGCTCTCAAAAAC......................................................................................................................................................	27	15	1.73	26	24	0	2	0
......................................................................AATTATACCGTCACAGAGCAGGAGTG..................................................................................................................................................................................	26	12	1.50	18	11	1	5	1
......................................................................AATTATACCGTCACAGAGCAGGAGTGT.................................................................................................................................................................................	27	12	1.08	13	8	1	3	1
....................................................................................................................TCAAAAACTTCAGAGCATATGTG.......................................................................................................................................	23	5	1.00	5	3	0	2	0
....................................................................................................................TCAAAAACTTCAGAGCATATGTGGA.....................................................................................................................................	25	5	1.00	5	4	0	1	0
...........................TCCTATCGCTTTCGTTTCGAAGAAGC.............................................................................................................................................................................................................................	26	8	0.88	7	2	0	5	0
....................................................................................................................TCAAAAACTTCAGAGCATATGTGG......................................................................................................................................	24	5	0.80	4	4	0	0	0
............................................................................................................................TTCAGAGCATATGTGGAAGGACTCCC............................................................................................................................	26	5	0.80	4	4	0	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTCAAGT.........................................................................................	27	14	0.71	10	5	0	5	0
......................................................................AATTATACCGTCACAGAGCAG.......................................................................................................................................................................................	21	13	0.62	8	4	0	4	0
............................................................................................................................TTCAGAGCATATGTGGAAGGACTC..............................................................................................................................	24	5	0.60	3	1	0	2	0
..................................................................................................TGGCCGCAATAGTAGCTCTCAAAAAC......................................................................................................................................................	26	15	0.47	7	6	0	1	0
.....................................................................................................................CAAAAACTTCAGAGCATATGTGG......................................................................................................................................	23	5	0.40	2	2	0	0	0
............................................................................................................................TTCAGAGCATATGTGGAAGGACT...............................................................................................................................	23	5	0.40	2	0	0	2	0
............................................................................................................................TTCAGAGCATATGTGGAAGGACTCCCTT..........................................................................................................................	28	5	0.40	2	1	0	1	0
.......................................................................ATTATACCGTCACAGAGCAGGA.....................................................................................................................................................................................	22	13	0.38	5	5	0	0	0
............................CCTATCGCTTTCGTTTCGAAGAAGC.............................................................................................................................................................................................................................	25	8	0.38	3	2	1	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGCT..............................................................................................	22	16	0.38	6	5	0	1	0
......................................................................AATTATACCGTCACAGAGCAGGAGTGTT................................................................................................................................................................................	28	12	0.33	4	3	1	0	0
ACAAGTGTCTGAAGAAGGTGAC............................................................................................................................................................................................................................................................	22	12	0.33	4	3	0	1	0
......................................................................AATTATACCGTCACAGAGCA........................................................................................................................................................................................	20	13	0.31	4	0	0	4	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGC...............................................................................................	21	16	0.25	4	2	0	2	0
ACAAGTGTCTGAAGAAGGTGACGA..........................................................................................................................................................................................................................................................	24	12	0.25	3	2	1	0	0
...............................................................................................................AGCTCTCAAAAACTTCAGAGCATATGT........................................................................................................................................	27	5	0.20	1	1	0	0	0
........................................................................................................................AAACTTCAGAGCATATGTGGAAGGACT...............................................................................................................................	27	5	0.20	1	0	0	1	0
.............................................................................................................................TCAGAGCATATGTGGAAGGACTCCCTT..........................................................................................................................	27	5	0.20	1	1	0	0	0
....................................................................................................................TCAAAAACTTCAGAGCATATGTGGAA....................................................................................................................................	26	5	0.20	1	1	0	0	0
............................................................................................................................TTCAGAGCATATGTGGAAGGACTCCCT...........................................................................................................................	27	5	0.20	1	1	0	0	0
............................................................................................................................TTCAGAGCATATGTGGAAGGACTCCCTA..........................................................................................................................	28	5	0.20	1	1	0	0	0
..............................................................................................TGTTTGGCCGCAATAGTAGCTCTCAA..........................................................................................................................................................	26	15	0.20	3	1	0	2	0
...............................................................................................................................................................AATAACCGACCATGCTTCGCTCA............................................................................................	23	15	0.20	3	3	0	0	0
..................................................................................................................TCTCAAAAACTTCAGAGCATATGTGGA.....................................................................................................................................	27	5	0.20	1	0	0	1	0
ACAAGTGTCTGAAGAAGGTGA.............................................................................................................................................................................................................................................................	21	12	0.17	2	2	0	0	0
ACAAGTGTCTGAAGAAGGTGACGAGC........................................................................................................................................................................................................................................................	26	12	0.17	2	2	0	0	0
ACAAGTGTCTGAAGAAGGTGACGAG.........................................................................................................................................................................................................................................................	25	12	0.17	2	2	0	0	0
...........................................................................TACCGTCACAGAGCAGGAGTGTTTGGC............................................................................................................................................................................	27	13	0.15	2	1	0	1	0
.....TGTCTGAAGAAGGTGACGAGCGTCC....................................................................................................................................................................................................................................................	25	13	0.15	2	2	0	0	0
.........................................TTTCGAAGAAGCTGAACAAAGCACA................................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0
...............................................................................................................................................................AATAACCGACCATGCTTCGCTCAAGT.........................................................................................	26	14	0.14	2	2	0	0	0
....................................................CTGAACAAAGCACAACGAAATTT.......................................................................................................................................................................................................	23	7	0.14	1	1	0	0	0
...........................................................AAGCACAACGAAATTATACCG..................................................................................................................................................................................................	21	7	0.14	1	0	0	1	0
..............................TATCGCTTTCGTTTCGAAGAAGCTGAACA.......................................................................................................................................................................................................................	29	7	0.14	1	1	0	0	0
............................................CGAAGAAGCTGAACAAAGCACAA...............................................................................................................................................................................................................	23	7	0.14	1	1	0	0	0
.....................................................TGAACAAAGCACAACGAAATTATACC...................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0
..............................................................................................TGTTTGGCCGCAATAGTAGCTCTCA...........................................................................................................................................................	25	15	0.13	2	2	0	0	0
..............................................................................................TGTTTGGCCGCAATAGTAGCTCTCAAA.........................................................................................................................................................	27	15	0.13	2	1	0	1	0
...................................................................................................GGCCGCAATAGTAGCTCTCAAAAAC......................................................................................................................................................	25	15	0.13	2	2	0	0	0
.....................................TTCGTTTCGAAGAAGCTGAACAAAG....................................................................................................................................................................................................................	25	8	0.13	1	1	0	0	0
.....................................TTCGTTTCGAAGAAGCTGAACAAAGC...................................................................................................................................................................................................................	26	8	0.13	1	1	0	0	0
...............................ATCGCTTTCGTTTCGAAGAAGCTGAAC........................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0
....................................TTTCGTTTCGAAGAAGCTGAACAAAGC...................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0
...............................ATCGCTTTCGTTTCGAAGAAGCTGAACAA......................................................................................................................................................................................................................	29	8	0.13	1	1	0	0	0
..............................TATCGCTTTCGTTTCGAAGAAGC.............................................................................................................................................................................................................................	23	8	0.13	1	1	0	0	0
................................TCGCTTTCGTTTCGAAGAAGCTGAACA.......................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0
...................................................................CGAAATTATACCGTCACAGAGCAGGAG....................................................................................................................................................................................	27	8	0.13	1	1	0	0	0
......................................TCGTTTCGAAGAAGCTGAACAAAGC...................................................................................................................................................................................................................	25	8	0.13	1	1	0	0	0
...........................TCCTATCGCTTTCGTTTCGATA.................................................................................................................................................................................................................................	22	9	0.11	1	1	0	0	0
...................................................................CGAAATTATACCGTCACAGAGCAGG......................................................................................................................................................................................	25	9	0.11	1	1	0	0	0
...............................ATCGCTTTCGTTTCGAAGAAGC.............................................................................................................................................................................................................................	22	9	0.11	1	1	0	0	0
.........TGAAGAAGGTGACGAGCGTCCTATCGC..............................................................................................................................................................................................................................................	27	10	0.10	1	0	0	1	0
.......TCTGAAGAAGGTGACGAGCGTCCTAT.................................................................................................................................................................................................................................................	26	10	0.10	1	1	0	0	0
.......................................................................ATTATACCGTCACAGAGCAGGAG....................................................................................................................................................................................	23	12	0.08	1	1	0	0	0
.....................................................................AAATTATACCGTCACAGAGCAGGAG....................................................................................................................................................................................	25	12	0.08	1	1	0	0	0
.......................................................................ATTATACCGTCACAGAGCAGGAGTGT.................................................................................................................................................................................	26	12	0.08	1	1	0	0	0
ACAAGTGTCTGAAGAAGGTGACG...........................................................................................................................................................................................................................................................	23	12	0.08	1	1	0	0	0
ACAAGTGTCTGAAGAAGGT...............................................................................................................................................................................................................................................................	19	12	0.08	1	1	0	0	0
ACAAGTGTCTGAAGAAGGTGACC...........................................................................................................................................................................................................................................................	23	12	0.08	1	1	0	0	0
.........................................................................TATACCGTCACAGAGCAGGAGT...................................................................................................................................................................................	22	12	0.08	1	1	0	0	0
..........................................................................ATACCGTCACAGAGCAGGAGTG..................................................................................................................................................................................	22	12	0.08	1	1	0	0	0
......................................................................AATTATACCGTCACAGAGCAGGAGG...................................................................................................................................................................................	25	12	0.08	1	1	0	0	0
.......................................................................ATTATACCGTCACAGAGCAGGAGT...................................................................................................................................................................................	24	12	0.08	1	1	0	0	0
.CAAGTGTCTGAAGAAGGTGACGAGC........................................................................................................................................................................................................................................................	25	13	0.08	1	1	0	0	0
.........TGAAGAAGGTGACGAGCGTCC....................................................................................................................................................................................................................................................	21	13	0.08	1	1	0	0	0
................................................................................TCACAGAGCAGGAGTGTTTGGCCGC.........................................................................................................................................................................	25	13	0.08	1	0	0	1	0
...........................................................................TACCGTCACAGAGCAGGAGTGTT................................................................................................................................................................................	23	13	0.08	1	0	0	1	0
.................................................................................................................................................................TAACCGACCATGCTTCGCTCAAGTGGC......................................................................................	27	13	0.08	1	1	0	0	0
.....TGTCTGAAGAAGGTGACGA..........................................................................................................................................................................................................................................................	19	13	0.08	1	1	0	0	0
..AAGTGTCTGAAGAAGGTGAC............................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	1	0
......................................................................AATTATACCGTCACAGAGCAGC......................................................................................................................................................................................	22	13	0.08	1	1	0	0	0
...........................................................................TACCGTCACAGAGCAGGAGTGTTT...............................................................................................................................................................................	24	13	0.08	1	0	0	1	0
.................................................................................................................................................................TAACCGACCATGCTTCGCTCAAG..........................................................................................	23	14	0.07	1	1	0	0	0
................................................................................................TTTGGCCGCAATAGTAGCT...............................................................................................................................................................	19	15	0.07	1	1	0	0	0
..................................................................................................TGGCCGCAATAGTAGCTCTCAAAAACA.....................................................................................................................................................	27	15	0.07	1	1	0	0	0
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTCAT...........................................................................................	25	15	0.07	1	1	0	0	0
..................................................................................................TGGCCGCAATAGTAGCTCTCAA..........................................................................................................................................................	22	15	0.07	1	1	0	0	0
...............................................................................................................................................................AATAACCGACCATGCTTCGCTC.............................................................................................	22	15	0.07	1	1	0	0	0
......................................................................AATTATACCGTCACAGAG..........................................................................................................................................................................................	18	15	0.07	1	0	0	1	0
.................................................................................................TTGGCCGCAATAGTAGCTCTCAAAAACT.....................................................................................................................................................	28	15	0.07	1	1	0	0	0
..................................................................................................TGGCCGCAATAGTAGCTCTCAAAAA.......................................................................................................................................................	25	15	0.07	1	1	0	0	0
................................................................................................TTTGGCCGCAATAGTAGCTCTCAAAAAC......................................................................................................................................................	28	15	0.07	1	1	0	0	0
.................................................................................................TTGGCCGCAATAGTAGCTC..............................................................................................................................................................	19	15	0.07	1	1	0	0	0
................................................................................................TTTGGCCGCAATAGTAGCTCA.............................................................................................................................................................	21	15	0.07	1	0	0	1	0
..................................................................................................................................................TCCCTTTTAAAATAATAACCGACCATGC....................................................................................................	28	15	0.07	1	1	0	0	0
................................................................................................TTTGGCCGCAATAGTAGCTCTCAAA.........................................................................................................................................................	25	15	0.07	1	1	0	0	0
....................................................................................................GCCGCAATAGTAGCTCTCAAAAACT.....................................................................................................................................................	25	15	0.07	1	1	0	0	0
.........................................................................................................................................................TAAAATAATAACCGACCAT......................................................................................................	19	15	0.07	1	0	0	1	0
..............................................................................................TGTTTGGCCGCAATAGTAGCTC..............................................................................................................................................................	22	15	0.07	1	0	0	0	1
..............................................................................................................................................................TAATAACCGACCATGCTTCGCTCATT..........................................................................................	26	15	0.07	1	1	0	0	0
.................................................................................................TTGGCCGCAATAGTAGCT...............................................................................................................................................................	18	15	0.07	1	1	0	0	0
.............................................................................................................................................................ATAATAACCGACCATGCTTCGCT..............................................................................................	23	16	0.06	1	1	0	0	0
...............................................................................................GTTTGGCCGCAATAGTAGC................................................................................................................................................................	19	16	0.06	1	1	0	0	0

droYak3

CCAATACGACGAGGAAAAGAACGAACGTCCGATTGCCTTCTTCTCCGCAAAGCTAAACAAACATCAGATAAATTATTCTGTGACGGAGAAGGAGTGCTTGGCAGCCGTACTTGCCATCGAAAAGTTCCGGCCCTACGTGGAACTGATGCAGTTCACGGTCATCACCGACCACGCCAGTCTGAAGTGGCTGATGACCATGAAAGACCTTAGTGGGCGCCTGGCACGATGGTCACTCAGGTTGCAGAGCTTCGACTTCCAGATAGCGCACCGGAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................TCCGGCCCTACGTGGAACTGATGCAG...........................................................................................................................	26	9	2.56	23	0	0	0	0	0	0	0	0	0	0	23
...........AGGAAAAGAACGAACGTCCGATTGCC.............................................................................................................................................................................................................................................	26	12	2.50	30	2	20	7	0	0	0	1	0	0	0	0
.................................................................................................TTGGCAGCCGTACTTGCCATCGAAAAGT.....................................................................................................................................................	28	8	1.00	8	0	0	0	0	0	0	0	0	0	0	8
..................................................................................................................................................................................................................................................AGAGCTTCGACTTCCAGATAGCGC........	24	12	0.92	11	0	10	0	0	0	0	1	0	0	0	0
...........AGGAAAAGAACGAACGTCCGATTGCCT............................................................................................................................................................................................................................................	27	12	0.92	11	1	4	6	0	0	0	0	0	0	0	0
....................................................................TAAATTATTCTGTGACGGAGAAGGAG....................................................................................................................................................................................	26	10	0.70	7	0	0	0	0	0	0	0	0	0	0	7
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGAC.........................................................................................................	24	10	0.70	7	0	4	2	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................AGAGCTTCGACTTCCAGATAGCGCACC.....	27	12	0.50	6	0	6	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGA..........................................................................................................	23	10	0.50	5	0	5	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GACCATGAAAGACCTTAGTGGGCGCC........................................................	26	7	0.43	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGAGCTTCGACTTCCAGATAGCGCA.......	25	12	0.42	5	0	5	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGACC........................................................................................................	24	10	0.40	4	0	4	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TCAGGTTGCAGAGCTTCGACTTCCAGAT.............	28	10	0.40	4	0	0	1	0	0	0	0	0	0	0	3
...............................................................................................................................................................................................TGACCATGAAAGACCTTAGTGGGC...........................................................	24	8	0.38	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGACCACGC....................................................................................................	28	9	0.33	3	0	3	0	0	0	0	0	0	0	0	0
...........AGGAAAAGAACGAACGTCCGATTGC..............................................................................................................................................................................................................................................	25	12	0.33	4	0	3	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTCGACTTCCAGATAGCGCACCGGA..	25	12	0.33	4	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGACCAC......................................................................................................	26	10	0.30	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TGATGCAGTTCACGGTCATCACCGAC.........................................................................................................	26	10	0.30	3	0	1	2	0	0	0	0	0	0	0	0
........................................................ACAAACATCAGATAAATTATTCTG..................................................................................................................................................................................................	24	10	0.30	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGACCATGAAAGACCTTAGTGGGCGC.........................................................	26	7	0.29	2	0	2	0	0	0	0	0	0	0	0	0
...........AGGAAAAGAACGAACGTCCGATTG...............................................................................................................................................................................................................................................	24	12	0.25	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGAGCTTCGACTTCCAGATAGCGCAC......	26	12	0.25	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TCTGAAGTGGCTGATGACCATGAAAGACC....................................................................	29	9	0.22	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGACCACG.....................................................................................................	27	9	0.22	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GAACTGATGCAGTTCACGGTCATCACC............................................................................................................	27	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGGTCACTCAGGTTGCAGAGCTTCGAC.....................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CACGATGGTCACTCAGGTTGCAGAGC...........................	26	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGA..........................................................................................................	22	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
........................................................ACAAACATCAGATAAATTATTCTGT.................................................................................................................................................................................................	25	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCACTCAGGTTGCAGAGCTTCGACT....................	25	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCACCGACCACGCCAGTCTGAAGTGGC......................................................................................	27	11	0.18	2	0	1	1	0	0	0	0	0	0	0	0
............GGAAAAGAACGAACGTCCGATTGCC.............................................................................................................................................................................................................................................	25	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TCGACTTCCAGATAGCGCACCGGA..	24	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGAGCTTCGACTTCCAGATAGCG.........	23	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GACCATGAAAGACCTTAGTGGGCGC.........................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CCATGAAAGACCTTAGTGGGCGCCT.......................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGACCATGAAAGACCTTAGTGGGCGCC........................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGACCATGAAAGACCTTAGTGGGCGCCT.......................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATGAAAGACCTTAGTGGGCGCCT.......................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGACCATGAAAGACCTTAGTGG.............................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................GAAGGAGTGCTTGGCAGCCGTACT...................................................................................................................................................................	24	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGACCATGAAAGACCTTAGTGGG............................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................TGCTTGGCAGCCGTACTTGCCATCGAA.........................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................GTGCTTGGCAGCCGTACTTGCCA..............................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................GACGGAGAAGGAGTGCTTGGCAGCCG.......................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................GGAGTGCTTGGCAGCCGTACTTGCC...............................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................AAGGAGTGCTTGGCAGCCGTACTTGCC...............................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................AGTGCTTGGCAGCCGTACTTGCCATC............................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................CGGAGAAGGAGTGCTTGGCAGCCG.......................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................ACGGAGAAGGAGTGCTTGGCAGCCG.......................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TTCCGGCCCTACGTGGAACTGATG..............................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................TCGAAAAGTTCCGGCCCTACGTGGAAC...................................................................................................................................	27	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................TCGAAAAGTTCCGGCCCTACGTGGAACT..................................................................................................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GCGCCTGGCACGATGGTCACTCAGGT...................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GAAGTGGCTGATGACCATGAAAGACCT...................................................................	27	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TCCGGCCCTACGTGGAACTGATGCAGT..........................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................TGTGACGGAGAAGGAGTGCTTGGCA...........................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................TGGAACTGATGCAGTTCACGGTCATCAC.............................................................................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...........................TCCGATTGCCTTCTTCTCCGCAAAGC.............................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
......................................................AAACAAACATCAGATAAATTATTCTG..................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGAT.........................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................CAAACATCAGATAAATTATTCTGT.................................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGACCAT......................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACTGATGCAGTTCACGGTCATCACCGAC.........................................................................................................	29	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
........................................................ACAAACATCAGATAAATTATTCT...................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACTGATGCAGTTCACGGTCATCA..............................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GCAGTTCACGGTCATCACCGACC........................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGACCA.......................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CTCAGGTTGCAGAGCTTCGACTTCC.................	25	10	0.10	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TCAGGTTGCAGAGCTTCGACTTCCAGA..............	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................GATGCAGTTCACGGTCATCACCGAC.........................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGGTCACTCAGGTTGCAGAGCTTCGACT....................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCACTCAGGTTGCAGAGCTTCGACTTC..................	27	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CACTCAGGTTGCAGAGCTTCGACTTC..................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................CAAACATCAGATAAATTATTCTG..................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CGATGGTCACTCAGGTTGCAGAGCT..........................	25	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................AACTGATGCAGTTCACGGTCATCACC............................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGACCAC......................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCG...........................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TCACGGTCATCACCGACCACGCCAGTC...............................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAGGTTGCAGAGCTTCGACTTCC.................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGACCAT......................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCACTCAGGTTGCAGAGCTTCGAC.....................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGCACGATGGTCACTCAGGTTGC................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CACGATGGTCACTCAGGTTGCAGT.............................	24	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................AGATAAATTATTCTGTGACGGAGA.........................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACGATGGTCACTCAGGTTGCAGAGC...........................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAGTTCACGGTCATCACCGAC.........................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATGCAGTTCACGGTCATCACCGACCATT.....................................................................................................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCACCGACCACGCCAGTCTGAAGT.........................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CATCACCGACCACGCCAGTCTGAAGC.........................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCACCGACCACGCCAGTCTGAAGTGGCT.....................................................................................	28	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCACCGACCACGCCAGTCTGAAGTG........................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................TAAATTATTCTGTGACGGAGAAGG......................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CATCACCGACCACGCCAGTCTGAAGTG........................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TCATCACCGACCACGCCAGTCTGAAG..........................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCACCGACCACGCCAGTCTGAAGTGG.......................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCACGGTCATCACCGACCACGCCAG.................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...............AAAGAACGAACGTCCGATTGCCT............................................................................................................................................................................................................................................	23	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGTTCACGGTCATCACCGACC........................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CAGAGCTTCGACTTCCAGATAGCGCACC.....	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......CGACGAGGAAAAGAACGAACGTCCGA..................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............GGAAAAGAACGAACGTCCGATTGC..............................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CAGAGCTTCGACTTCCAGATAGC..........	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........AGGAAAAGAACGAACGTCCGATTGCT.............................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............GGAAAAGAACGAACGTCCGATTG...............................................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............AAAGAACGAACGTCCGATTGCC.............................................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............GGAAAAGAACGAACGTCCGATTGCCT............................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GAGCTTCGACTTCCAGATAGCGC........	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........CGAGGAAAAGAACGAACGTCCGATT................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCTTCGACTTCCAGATAGCGCACC.....	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..........GAGGAAAAGAACGAACGTCCGATTG...............................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......GACGAGGAAAAGAACGAACGTCCGA..................................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GAGCTTCGACTTCCAGATAGCGCA.......	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGAGCTTCGACTTCCAGATAGCGCAT......	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....TACGACGAGGAAAAGAACGAACGTCC....................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........AGGAAAAGAACGAACGTCCGATTGCCC............................................................................................................................................................................................................................................	27	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...........AGGAAAAGAACGAACGTCCGATTGCCA............................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CCAATATGACGAGGAGAAGGAGGAGCATCCGATTGCCTTTTTTTCTGCAAAGTTGAATAAACATCAAATTAATTATTCTGTTACAGAAAAGGAGTGCTTTGCAGCCGTACTTGCCAACGAGAAATTTAAGCCTTATGTGGCACTGCAGCAGTTCACAGTCATCACCGACCATGCCAGTCTTAAGTGGCTGATGACCATGAAATACCTTAATGGGCCCCTGGCGCGATGGTCATTAAGGCTGCAGAGCTTCGATTTCCAGATAGAGCACTGGAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.CAATATGACGAGGAGAAGGAG............................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0

dvi_9761

scaffold_12958:2313030-2313180 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCAAAAAGATATTGAGGATCAGGAACGACCCATACTCTTGTTTTCAGCCAAGTTGCACAAACATCAGCGGAACTATTCCGTAGCTGAAGAGGAGTGCTTACTGGCCATAAATATGTTCAGACCCTATATAGAAGGGATGCCTTTCACATGTATCACTGTTCACGCCATCTTATAATGGCTGATGTCTGTGAAGCACCTAAGCGGGAGAGTTGCATCCGCAAGGCTATGACTTTACCATCAAGCAACGTAAA ************************************************.(((.((((.((((((((((((...)))))....((((.((..((((...((((.(((....))).))))..........((((((...))))))....))))..)).))))..((((......))))))))))).)))).))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	SRR060686 Argx9_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060659 Argentina_testes_total	SRR060685 9xArg_0-2h_embryos_total	SRR060689 160x9_testes_total	M047 female body	SRR060676 9xArg_ovaries_total	SRR060660 Argentina_ovaries_total	M027 male body	M028 head	SRR060670 9_testes_total	V053 head	SRR060658 140_ovaries_total	SRR060657 140_testes_total	SRR060675 140x9_ovaries_total	SRR060662 9x160_0-2h_embryos_total
.................................................................................AGGTTAAGAGGAGTGCTT........................................................................................................................................................	18	2	2	15.00	30	4	8	7	3	5	1	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................AGGTTAAGAGGAGTGCTTAG......................................................................................................................................................	20	3	2	12.50	25	15	4	2	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................AGGTTAAGAGGAGTGCTTA.......................................................................................................................................................	19	2	1	10.00	10	3	3	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GAAGGTTAAGAGGAGTGCTT........................................................................................................................................................	20	3	3	9.00	27	9	2	7	6	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0
...............................................................................GAAGGTTAAGAGGAGTGCTTA.......................................................................................................................................................	21	3	1	7.00	7	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AAGGTTAAGAGGAGTGCTTA.......................................................................................................................................................	20	3	3	1.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGCATCTAAGCGGGAAACTTGC......................................	22	3	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................GCCAAGTTGCACAAACACCAGCGGA....................................................................................................................................................................................	25	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........TATTGAGGATCAGGAACGACCCATACTC......................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................GGTTAAGAGGAGTGCTTAG......................................................................................................................................................	19	3	20	0.90	18	15	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AAGCATCTAAGCGGGAAA...........................................	18	2	7	0.57	4	1	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................CTAAGCGGGAAACTTGCCTC...................................	20	3	7	0.43	3	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0
..................................................................................GGTTAAGAGGAGTGCTTA.......................................................................................................................................................	18	2	20	0.25	5	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGTTTCACTGTTCACGCTCTCT.................................................................................	22	3	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AAGCATCTAAGCGGGAAACT.........................................	20	3	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................ATCTAAGCGGGAAACTTGC......................................	19	3	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTATAATGGAGGATGTCAGT..............................................................	20	3	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CTTACAATGGCTGATGTT.................................................................	18	2	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GGTAGGTTAAGAGGAGTGC..........................................................................................................................................................	19	3	16	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGGAGGTTCAGGAACGACT.............................................................................................................................................................................................................................	19	3	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................CTAAAGCATCTAAGCGGGA.............................................	19	3	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.CAAAAATATATTGAGGAG........................................................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1