ID:

dvi_9754

 Coordinate:

scaffold_12958:2125724-2125874 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7 -8.5 -8.3 -8.1

Flybase annnotation

exon [dvir_GLEANR_11082:2]; CDS [Dvir\GJ11148-cds]; intron [Dvir\GJ11148-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAAATATGGTTACTTTTTCCCGTGACCACGTGTTTACTTTACTTTAATCCCAGATTGAACACACTTGTGGCCTGGGGCTTATTTATATTTGAGCTTAAATTTTTTCTTTCAAATTATTAACTAAATGGATAAAGTTCTAACGGGCTGGTTCAGTGAAATCCAAAATGAATTATGGCCTGGACAATCATTTTCTTTAAAAGTGCAAAATGTTCTTCACAAAGAAAAGTCGAAATTCCAAGATATTCAAATA
**********************************************************************************************************************.........((.......((....((((((...)))).....)).....)).......))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060675
140x9_ovaries_total
 M061
embryo
 SRR060674
9x140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060683
160_testes_total
 SRR060688
160_ovaries_total
 GSM1528803
follicle cells		 SRR060656
9x160_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 M028
head
 SRR060654
160x9_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR1106719
embryo_8-10h
 SRR1106729
mixed whole adult body
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 V053
head
......................................................................................................................TAACTAAATGGATAAAGTTCTAACGGGC......................................................................................................... 28 0 1 12.00 12 2 2 4 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................TCACAAAGAAAAGTCGAAATTCCAAGA.......... 27 0 1 9.00 9 2 1 0 2 0 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACGGGCTGGTTCAGTGAAATCCAAAA..................................................................................... 28 0 1 4.00 4 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTTCACAAAGAAAAGTCGAAATTCCA............. 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCAGTGAAATCCAAAATGAATTATGGCC......................................................................... 28 0 1 3.00 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................TGAATTATGGCCTGGACAATCATTT............................................................ 25 0 1 3.00 3 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAGTCGAAATTCCAAGATATTCAAA.. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATGAATTATGGCCTGGGCAA.................................................................. 20 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTCTAACGGGCTGGTTCAGTGAAATC.......................................................................................... 26 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTAAAAGTGCAAAATGTTCTTCACAAA.............................. 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACGGGCTGGTTCAGTGAAATCCAAAA..................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGATAAAGTTCTTACGGGC......................................................................................................... 19 1 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACTAAATGGATAAAGTTCTAACGGGCT........................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........TTACTTTTTCCCGTGACCACGTGTT........................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCAAAATGTTCTTCACAAAGAAAAGTC...................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGGACAATCATTTTCTTTAAAAGTGC............................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TAAAGTTCTAACGGGCTGGTTCAGTG............................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTTCTAACGGGCTGGTTCAGT................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAGTGAAATCCAAAATGAATTAT............................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGATAAAGTTCTAACGGGCTG....................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TGGTTCAGTGAAATCCAAAATGAATTAT............................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTGGACAATCATTTTCTTTAAAAGTGC............................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GAAAAGTCGAAATTCCAAGAT......... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCACAAAGAAAAGTCGAAATTCCAAGA.......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCAAAATGTTCTTCACAAAGAAAAGTCG..................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTCTAACGGGCTGGTTCAGTGAAATCC......................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ATTTTTTCTTTCAAATTATT.................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCTTCACAAAGAAAAGTCGAAATTCCA............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACGGGCTGGTTCAGTGAAATCCAA....................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTTTAAAAGTGCAAAATGTTCTTCACAA............................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ATCCCAGATTGAACACACTTGTGGCCTG................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGTCTAACGGGCTGGTTCAGT................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGATAAAGTTCTGACGGGCTG....................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCAAAATGTTCTTCACAAA.............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACTAAATGGATAAAGTTCTAACGGGC......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGTGAAATCCAAAATGAATTATGGCC......................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTATGGCCTGGACAATCATTTTC.......................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTATGGCCTGGGCACTCATTTT........................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACGGGCTGGTTCAGTGAAATCCAAA...................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATTGAACACACTTGTGGCCTTGG.............................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AATGAATTATGGCCTGGACAATCATT............................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCCAGATTGAACACACTTGTGGC................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................ACGGGCTGGTTCAGTGAAATCCAAAA..................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AATCATTTTCTTTAAAAG.................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAACTAAATGGATAAAGTTCTAACGGG.......................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CCAGATTGAACACACTTGTGGCCTG................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTTCTTCACAAAGAAAAGTCGAAATT................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCAGTGAAATCCAAAATGAATTATGG........................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAGTCGAAATTCCAAGATATT...... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGGATAAAGTTCTAACGGGCTGGT..................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTTCACAAAGAAAAGTCGAAATTCCAA............ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTGCAAAATGTTCTTCACAA............................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATGGATAAAGTTCTAACGGGCTG....................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TAACTAAATGGATAAAGTTCTAACG............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTATGGCCTGGACAATCATT............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGATAAAGTTCTAACGGGCTGGTT.................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................ACACTTGTGGCCTGGGGC............................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAATGAATTATGGCCTGGACA................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCCAGATTGAACACACTTGTGGCCT................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................AATCCCAGATTGAACACACTTGTGGCCT................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGAACACACTTGTGGCCTGGGGCTTAT........................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GAACACACTTGTGGCCTGGGGC............................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACGGGCTGGTTCAGTGAAAT........................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCTAACGGGCTGGTTCAGTGAAATC.......................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ACTAAATGGATAAAGTTCTAACGGGC......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAACACACTTGTGGCCTGGG.............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACACACTTGTGGCCTGGGGCTT.......................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCTTTAAAAGTGCAAAATGTTCTTCACA................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGAACACACTTGTGGCCTGGG.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACGGGCTGGTTCAGTGAA............................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATGGATAAAGTTCTAACGGGCTGGT..................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAAAAGTCGAAATTCCAAGATATTC..... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTTCTAACGGGCTGGTTCAGTG............................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TATGGCCTGGACAATCATTTT........................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAGTGAAATCCAAAATGAATTATGGCC......................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAATGTTCTTCACAAAGAAAAGTCGAA................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAATGAATTATGGCCTGGACAATCATT............................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................ACTTTAATCCCAGATTGAACACACTTG....................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTTACTTTAATCCCAGATT.................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ACTTTACTTTAATCCCAGAT................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCTAACGGGCTGGTTCAGTGAAATCC......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTCTAACGGGCTGGTTCAGTGAAAT........................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATGAATTATGGCCTGGAC.................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAGTGAAATCCAAAATGAATTATGGCC......................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACACACTTGTGGCCTGGGGC............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAATTCCAAGATATTCATC.. 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTCGACAATCACTTGCTTTA...................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................GATAAAGTTTAAACGAGCTG....................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GGGGCTTATTTTTATTTTA.............................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................TTGAGCTTAATTTTTTCC................................................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGTTCTAACCGGATGGCT.................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATTTTATACCAATGAAAAAGGGCACTGGTGCACAAATGAAATGAAATTAGGGTCTAACTTGTGTGAACACCGGACCCCGAATAAATATAAACTCGAATTTAAAAAAGAAAGTTTAATAATTGATTTACCTATTTCAAGATTGCCCGACCAAGTCACTTTAGGTTTTACTTAATACCGGACCTGTTAGTAAAAGAAATTTTCACGTTTTACAAGAAGTGTTTCTTTTCAGCTTTAAGGTTCTATAAGTTTAT
*************************************************************************.........((.......((....((((((...)))).....)).....)).......))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060685
9xArg_0-2h_embryos_total
 M027
male body		 M061
embryo
 SRR060655
9x160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 V116
male body		 V047
embryo
 M028
head
 V053
head
 SRR060659
Argentina_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR1106714
embryo_2-4h
 SRR1106716
embryo_4-6h
 SRR1106717
embryo_6-8h
 SRR1106728
larvae
 SRR1106730
embryo_16-30h
..................................................GGTCTAACTTGTGTGAACACC.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCTTCTGAGCTTGAAGGTTC........... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GAAATGAAATTAGGGTCTAACTTGTG............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CGGACCTGTTAGTAAAAGA......................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAGATTGCCCGACCAAGTCAC............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TATACCAATGAAAAAGTCCAATG................................................................................................................................................................................................................................ 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TAGATTGCCCGACCAAGT.................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TAAAAAAGAAAGTTTCAGAAT................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AAAGCAAGTTTAATAA.................................................................................................................................... 16 1 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1
..........................................................................................................................................................ACCTTAGATTTTACTTAAT.............................................................................. 19 2 18 0.17 3 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACCCTAGGTTTTACTTAATA............................................................................. 20 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGACCAGGTCACTTTACG......................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAATTTCAATATTCCCCGAC....................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGACCGAGTCACTTTACG......................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................CGACCGGGTCACTTTAGGCT....................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................TCGAATTTGAAAAAGACAG............................................................................................................................................ 19 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................CGACCGAGTCACTTTACGCT....................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................TCGAACTTAAGAAAGAAA............................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................AAAGCAAGTTTAATA..................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................CGACCGGGTCACTTTAGGC........................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CGAATTTACATAAGAAGGTT.......................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................GAGATTACGGTCTGACTTG.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCTTCTGAGCTTGAAGGT............. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12958:2125674-2125924 - dvi_9754 TAAAATATGGTTACTTTTTCCCGTGACCACGTGTTT----------ACTTT-ACTTTAATCCCAGATTGAACACACTTGTGGCCTGGGGCTTATTTATATTTGAGCTTAAATTT--TTTC--------------------------------TT-TCAAATT----------------------------------------------------------------------------ATTAACTAAATGGATAAAGTTCTAACGGGCTGGTTCAGT-------------GAAATCCAAAATGAATTATGGCCTGGACAATCATTTTCTTTAAAAGTGCAAAATGTTCTTCACA--AAGAAAAGTCGAAATTCCAAGATATTC-AAA-TA
droMoj3 scaffold_6540:4085625-4085894 + TAAAATACGGTAACTTTGCCACA-AGCCACGTGTTGCA------TTGATTT-ACATCGAACTCAGTTTGA------------------------------------------------------------------------------------------ACACAGATGTGTGTGGACGCAGATTGATATTAATCTAAA---TAATTTAATTA-GTACTAACGTTGTTCCTTTGCAAAA-TTCATAAATGGATTTAATTTCAAAAGGCTGGTTCAGT-------------GAAATCCAAGACGACTTATGGCCTGGACAATCATTTTCTTTAAAAGTTAAAGAAGTTCTTCATA--AAGAGAAGTCTGAATTTCAAGATATTC-AAG-TG
droGri2 scaffold_14906:13599134-13599386 - TATA-----GGTACTTTGTTTCGTAACCACGTTTTGCTATTATCTTGATTCGCCTTTGATCCGAGATTAA------------------------------------------------------------------------------------------ACGCAGACGTGC------T---------------CGATT---TTGTACAATTT-GCACCTTCGCAACTGCATTTCTATATTGACTAAATGGATCGAATTTCGAAAGGCTGGTTCAGT-------------GAAATCCAGGATGATTTATGGCCGGGACAATCTTTTTCTTTGAAAGTAAAAGAGGTTCTTCATG--CAGAAAAATCTCAATTCCAAGATATTC-AAA-TA
droWil2 scf2_1100000004902:11655106-11655354 - AAAAATATGGTTACTTTGAATTGGAGTCACATGTAGAT------TAAATTT-T--TGAGACTCAGTTTAA------------------------------------------------------------------------------------------TTATCAACGCGCCCGCGCT---------------ACGTTTAATTGTTCGGTTCAGCAGATCAGACACTTA----------ATTCGAAATGGATTTGATTTCAAACGGATGGTTCAGT-------------GAAGTTCAGAATGAACTCTGGCCTGGACAATCTTTTTCGCTGAAAGTTAAAAAAGTCCTGCATA--AGGAAGATTCGAAATTCCAAAATATTC-AAA-TT
dp5 2:18308154-18308300 - ATTTTGT-T-------------------------------------------------------------------------------------------------TT-----------------------------------------------TCTA---------------------------------------------------------------------------------ATATAAAATGGATACGATATCTTGCGGCTGGTTTAGT-------------GAAATTCAGGCCGAGCTATGGCCTGGACAGGCATTTTCCTTGAAAGTAAAAAATGTCATTCATA--AAGAAAAGTCAAAATACCAAGATATTC-AAA-TA
droPer2 scaffold_3:682936-683099 - ATAGTTC-AAT-----------------------------------------------------------------------------------------------TTCATTTTGTTTTT--------------------------------TTTTCTA---------------------------------------------------------------------------------TTATAACATGGATACGATATCTTGCGGCTGGTTTAGT-------------GAAATTCAGGCCGAGCTATGGCCTGGACAGGCATTTTCCTTGAAAGTAAAAAATGTCATTCATA--AAGAAAAGTCAAAATACCAAGATATTC-AAA-TA
droAna3 scaffold_13340:21287244-21287351 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGGTTCAGC-------------GAACTGCAGGCTGATCTATGGCCTGGACAGTCCTTCTCCTTGAAAGTAAAGGAAGTCATTCACA--AGGAGAAGTCAAAGTTTCAGGACATTC-AAA-TC
droBip1 scf7180000396413:1170186-1170320 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACCAATGGATTCCCTTAACAACGGATGGTTCAGC-------------GAACTGCAGGCCGACCTATGGCCTGGACAGTCCTTCTCCTTGAAAGTAAAGGAAGTCATTCACA--AGGAGAAGTCAAAGTTTCAGGACATTC-AAA-TC
droKik1 scf7180000302690:142685-142819 + AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAATGGATTCCTTAACTAACGGATGGTTCAGC-------------GAACTCCAGGCCGAGCTGTGGCCCGGACAGTCCTTTTCCCTGAAGGTCAAGGAAGTAATCCACA--AAGAACGTTCCAAGTTCCAGGACATCC-AAA-TT
droFic1 scf7180000454104:1385278-1385412 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTAACTAACGGATGGTTCAGC-------------GAACTGCAGGCCGATCTGTGGCCTGGCCAGTCATTCTCCTTGAAAGTTAAGGAGGTAATTCACA--AAGAAAAGTCAAAATTCCAGGACATTC-AGA-TT
droEle1 scf7180000491212:1024093-1024248 + GGGCTTATTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATCTTAAATCTTTAATCTAAATTTATTACAACAGTCTAATGTTGAGAAATGATAATTAA---ATAATTTAAAACAGTTATTTATTTACAATTCGATTTACTAATATATACTTAAAAAA-AATACATTTTTAAATATAT-AAA-TG
droRho1 scf7180000777865:233109-233243 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAATGGATTCCCTAACTAACGGATGGTTCAGC-------------GAACTACAGGCCGAACTCTGGCCTGGACAGTCCTTCTCCCTTAAAATCAAGGAATTGATCCATA--AGGAAAAGTCGAAATTCCAGGATATCC-AGG-TT
droBia1 scf7180000302140:104400-104539 - TTATTTTCGAT-----------------------------------------------------------------------------------------------TTT-----------TTGACACAGATAAGAATAACAGTGCGCATCAGTG-ATAAGTT----------------------------------ATT-TGCT-----------------------------GTAAAA-T------TAAGTTTTAATTTCAAAATGGTA------------------------------------------------GG-----------GGAGCTAAAAAATGTTATTCGTA--GAGAAGA-----------AGGGTATTCTAGATTC
droTak1 scf7180000415396:79647-79781 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTAAATAACGGATGGTTCAGC-------------GAGCTGCAGGCCGAGCTCTGGCCGGGACAGTCCTTCTCCCTGAAAGTCAAGGAGGTGATCCACA--AGGAGAAGTCCAAGTTCCAGGACATTC-AGA-TT
droEug1 scf7180000407136:233560-233698 - AAGCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTAACTAACGGTTGGTTCAGC-------------GAACTGCAGGCCACTCTTTGGCCTGGGCAGTCCTTCTCCCTGAAAGTCAAGGAGGTTCTTCATA--CTGAAAAGTCCAAGTACCAGGACATTC-AGA-TT
dm3 chr3L:22065673-22065713 + AAAGTGT-T-------------------------------------------------------------------------------------------------T-------------TT----------------------------------------------------------------------------------------------------------------------GATACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAAGACACAC-AA----
droSim2 node_12893:14334-14355 + TAAAATGTCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTTCCC-------------------------------------------------------------
droSec2 scaffold_4:2199101-2199171 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATCGAT------------------------------------------------------------------AATAATTAATTTGTTTAAAATTCCATTGTATTTTCCTAA--AGTACATATTGAATTGGTAAA-------------
droYak3 v2_chr2h_random_026:264985-265039 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACAC--------------------------------------------------------GCTTTTGGCGCAAAG-CCCCTTTTCCTTTAAGTCTGAG-TTATCTC---------------------------------------TT
droEre2 scaffold_4770:16140548-16140682 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTTAACAACGGATGGTTTAGC-------------GAACTGCAGGCCGATCTCTGGCCTGGTCAGTCCTTCTCCCTGAAAGTCAAGGAGGTCATCCACA--AGGAGAAGTCCCAGTTCCAGGACATCC-AGA-TC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAAAATATGGTTACTTTTTCCCGTGACCACGTGTTT----------ACTTT-ACTTTAATCCCAGATTGAACACACTTGTGGCCTGGGGCTTATTTATATTTGAGCTTAAATTT--TTTC--------------------------------TT-TCAAATT----------------------------------------------------------------------------ATTAACTAAATGGATAAAGTTCTAACGGGCTGGTTCAGT-------------GAAATCCAAAATGAATTATGGCCTGGACAATCATTTTCTTTAAAAGTGCAAAATGTTCTTCACA--AAGAAAAGTCGAAATTCCAAGATATTC-AAA-TASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................TAACTAAATGGATAAAGTTCTAACGGGC..........................................................................................................................28112.0012002010000000000000000000014200010000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................TCACA--AAGAAAAGTCGAAATTCCAAGA............2719.009002000100000000000000000220100000000001000000000000000000000000
....................................................................................................................................................................................................................................................................TAACGGGCTGGTTCAGT-------------GAAATCCAAAA.........................................................................................2814.004000000000010000000000000002100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TCTTCACA--AAGAAAAGTCGAAATTCCA...............2714.004004000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCAGT-------------GAAATCCAAAATGAATTATGGCC.............................................................................2813.003001000000000000000000000000110000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TGAATTATGGCCTGGACAATCATTT................................................................2513.003000000000000000000000000101100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AAAGTCGAAATTCCAAGATATTC-AAA-..2612.002000000000000000000000000002000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTCTAACGGGCTGGTTCAGT-------------GAAATC..............................................................................................2612.002000000000000000000000000101000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTTAAAAGTGCAAAATGTTCTTCACA--AA................................2812.002000000000000000000000000001100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AACGGGCTGGTTCAGT-------------GAAATCCAAAA.........................................................................................2712.002000000000000000000000000011000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACTAAATGGATAAAGTTCTAACGGGCT.........................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
..........TTACTTTTTCCCGTGACCACGTGTT...................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GCAAAATGTTCTTCACA--AAGAAAAGTC........................2711.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGGACAATCATTTTCTTTAAAAGTGC...................................................2611.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TAAAGTTCTAACGGGCTGGTTCAGT-------------G...................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GTTCTAACGGGCTGGTTCAGT-------------....................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................TTCAGT-------------GAAATCCAAAATGAATTAT.................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................GGATAAAGTTCTAACGGGCTG........................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TGGTTCAGT-------------GAAATCCAAAATGAATTAT.................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CTGGACAATCATTTTCTTTAAAAGTGC...................................................2711.001000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GAAAAGTCGAAATTCCAAGAT...........2111.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTCACA--AAGAAAAGTCGAAATTCCAAGA............2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGCAAAATGTTCTTCACA--AAGAAAAGTCG.......................2911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTCTAACGGGCTGGTTCAGT-------------GAAATCC.............................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................ATTT--TTTC--------------------------------TT-TCAAATT----------------------------------------------------------------------------ATT.....................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTCTTCACA--AAGAAAAGTCGAAATTCCA...............2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TAACGGGCTGGTTCAGT-------------GAAATCCAA...........................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CTTTAAAAGTGCAAAATGTTCTTCACA--A.................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................ATCCCAGATTGAACACACTTGTGGCCTG................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GCAAAATGTTCTTCACA--AA................................1911.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACTAAATGGATAAAGTTCTAACGGGC..........................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AGT-------------GAAATCCAAAATGAATTATGGCC.............................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ATTATGGCCTGGACAATCATTTTC..............................................................2411.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TAACGGGCTGGTTCAGT-------------GAAATCCAAA..........................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AATGAATTATGGCCTGGACAATCATT.................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
............................................................CCCAGATTGAACACACTTGTGGC...................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000001000000000000000
......................................................................................................................................................................................................................................................................ACGGGCTGGTTCAGT-------------GAAATCCAAAA.........................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AATCATTTTCTTTAAAAG......................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TAACTAAATGGATAAAGTTCTAACGGG...........................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................CCAGATTGAACACACTTGTGGCCTG................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GTTCTTCACA--AAGAAAAGTCGAAATT..................2611.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCAGT-------------GAAATCCAAAATGAATTATGG...............................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AAAGTCGAAATTCCAAGATATT........2211.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TGGATAAAGTTCTAACGGGCTGGT......................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TCTTCACA--AAGAAAAGTCGAAATTCCAA..............2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AAAAGTGCAAAATGTTCTTCACA--A.................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAAATGGATAAAGTTCTAACGGGCTG........................................................................................................................2611.001000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TAACTAAATGGATAAAGTTCTAACG.............................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ATTATGGCCTGGACAATCATT.................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GGATAAAGTTCTAACGGGCTGGTT.....................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
........................................................................ACACTTGTGGCCTGGGGC............................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AAAATGAATTATGGCCTGGACA.......................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................TCCCAGATTGAACACACTTGTGGCCT.................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
.........................................................AATCCCAGATTGAACACACTTGTGGCCT.................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................TGAACACACTTGTGGCCTGGGGCTTAT........................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
....................................................................GAACACACTTGTGGCCTGGGGC............................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AACGGGCTGGTTCAGT-------------GAAAT...............................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCTAACGGGCTGGTTCAGT-------------GAAATC..............................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................ACTAAATGGATAAAGTTCTAACGGGC..........................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................TTGAACACACTTGTGGCCTGGG..............................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................................................................ACACACTTGTGGCCTGGGGCTT..........................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCTTTAAAAGTGCAAAATGTTCTTCACA--..................................2811.001000000000000000000000000000100000000000000000000000000000000000
...................................................................TGAACACACTTGTGGCCTGGG..............................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TAACGGGCTGGTTCAGT-------------GAA.................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAAATGGATAAAGTTCTAACGGGCTGGT......................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AGAAAAGTCGAAATTCCAAGATATTC-......2611.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................GTTCTAACGGGCTGGTTCAGT-------------G...................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................TATGGCCTGGACAATCATTTT...............................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTCAGT-------------GAAATCCAAAATGAATTATGGCC.............................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AAAATGTTCTTCACA--AAGAAAAGTCGAA.....................2811.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AAATGAATTATGGCCTGGACAATCATT.................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
....................................................ACTTTAATCCCAGATTGAACACACTTG.......................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
................................................TTT-ACTTTAATCCCAGATT..................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................ACTTT-ACTTTAATCCCAGAT...................................................................................................................................................................................................................................................................................................................................2011.001000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCTAACGGGCTGGTTCAGT-------------GAAATCC.............................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTCTAACGGGCTGGTTCAGT-------------GAAAT...............................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................ATGAATTATGGCCTGGAC........................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAGT-------------GAAATCCAAAATGAATTATGGCC.............................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
......................................................................ACACACTTGTGGCCTGGGGC............................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AAATTCCAAGATATTC-ATC-..1950.201000000000000000100000000000000000000000000000000000000000000000
droMoj3
TAAAATACGGTAACTTTGCCACA-AGCCACGTGTTGCA------TTGATTT-ACATCGAACTCAGTTTGA------------------------------------------------------------------------------------------ACACAGATGTGTGTGGACGCAGATTGATATTAATCTAAA---TAATTTAATTA-GTACTAACGTTGTTCCTTTGCAAAA-TTCATAAATGGATTTAATTTCAAAAGGCTGGTTCAGT-------------GAAATCCAAGACGACTTATGGCCTGGACAATCATTTTCTTTAAAAGTTAAAGAAGTTCTTCATA--AAGAGAAGTCTGAATTTCAAGATATTC-AAG-TGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................GAACTCAGTTTGA------------------------------------------------------------------------------------------ACACAGATGTGT..........................................................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................................................................................................................................................TTTAAAAGTTAAAGAAGTTCTTCAT.....................................2511.001100000
...........................................................................................................................................................................TGTGGACGCAGATTGATATT.......................................................................................................................................................................................................2011.001100000
droGri2
TATA-----GGTACTTTGTTTCGTAACCACGTTTTGCTATTATCTTGATTCGCCTTTGATCCGAGATTAA------------------------------------------------------------------------------------------ACGCAGACGTGC------T---------------CGATT---TTGTACAATTT-GCACCTTCGCAACTGCATTTCTATATTGACTAAATGGATCGAATTTCGAAAGGCTGGTTCAGT-------------GAAATCCAGGATGATTTATGGCCGGGACAATCTTTTTCTTTGAAAGTAAAAGAGGTTCTTCATG--CAGAAAAATCTCAATTCCAAGATATTC-AAA-TASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................AATTTCGAAAGGCTGGTTCAGT-------------G...................................................................................................2311.00110
............................................................................................................................................................................................................................................................TCGAATTTCGAAAGGCTGGT......................................................................................................................2011.00110
..............................................GATTCGCCTTTGATCCGAGATT..................................................................................................................................................................................................................................................................................................................................2211.00110
.....................................................................................................................................................................................................................................................AAATGGATCGAATTTCGAAAGGCTG........................................................................................................................2511.00101
droWil2
AAAAATATGGTTACTTTGAATTGGAGTCACATGTAGAT------TAAATTT-T--TGAGACTCAGTTTAA------------------------------------------------------------------------------------------TTATCAACGCGCCCGCGCT---------------ACGTTTAATTGTTCGGTTCAGCAGATCAGACACTTA----------ATTCGAAATGGATTTGATTTCAAACGGATGGTTCAGT-------------GAAGTTCAGAATGAACTCTGGCCTGGACAATCTTTTTCGCTGAAAGTTAAAAAAGTCCTGCATA--AGGAAGATTCGAAATTCCAAAATATTC-AAA-TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................TGAACTCTGGCCTGGACAATCTTTTTCGC............................................................2912.00202000
..............................................................................................................................................................................................................TCGGTTCAGCAGATCAGAC.....................................................................................................................................................................1912.00220000
........................................................................................................................................................................................................................................................................CGGATGGTTCAGT-------------GAAGT...............................................................................................1811.00100010
....................................................................................................................................................................................................................................................................CAAACGGATGGTTCAGT-------------GAAGTTCAGA..........................................................................................2711.00100010
....ATATGGTTACTTTGAATTGGAGTC..........................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...............................................................................................................................................................................................................CGGTTCAGCAGATCAGAC.....................................................................................................................................................................1811.00110000
.............................................................................................................................................................................................................................................................................................................TGAACTCTGGCCTGGACAATCTTTT................................................................2511.00101000
........................................................................................................................................................................................................................................................................................................................CTGGACAATCTTTTTCGCTGAAAGT.....................................................2511.00100001
.......................................................................................................................................................................................................................................................................................................TCAGAATGAACTCTGGCCTGGACAATC....................................................................2711.00101000
..............................................................................................................................................................................................................................................................TGATTTCAAACGGATGGTTCAGT-------------GAAG................................................................................................2711.00101000
............................................................................................................................................................................................................................................................TTTGATTTCAAACGGATGGTTCAG..................................................................................................................2411.00100010
....................................................................AA------------------------------------------------------------------------------------------TTATCAACGCGCCCGCG.....................................................................................................................................................................................................................1911.00100010
..........................TCACATGTAGAT------TAAATTT-T--TGAG...........................................................................................................................................................................................................................................................................................................................................2411.00100010
.....................................................................................................................................................................................................................AGCAGATCAGACACTTA----------ATTCGAA...............................................................................................................................................2411.00100010
..........................................................................................................................................................................................................................ATCAGACACTTA----------ATTCGAA...............................................................................................................................................1911.00100001
............................................................................................................................................................................................................................................................................................................ATGAACTCTGGCCTGGAC........................................................................1811.00100010
................................................................................................................................................................................................................GGTTCAGCAGATCAGACACTTG----------......................................................................................................................................................2211.00100001
......................................................................................................................................................................................................................................................................................................TTCAGAATGAACTCTGGCCTGGACAA......................................................................2611.00101000
.....................................................................................................................................................................................................................................................................AAACGGATGGTTCAGT-------------GAAGT...............................................................................................2111.00100010
dp5
ATTTTGT-T-------------------------------------------------------------------------------------------------TT-----------------------------------------------TCTA---------------------------------------------------------------------------------ATATAAAATGGATACGATATCTTGCGGCTGGTTTAGT-------------GAAATTCAGGCCGAGCTATGGCCTGGACAGGCATTTTCCTTGAAAGTAAAAAATGTCATTCATA--AAGAAAAGTCAAAATACCAAGATATTC-AAA-TASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................TGCGGCTGGTTTAGT-------------GAAATTCAGGC.........................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................TTTCCTTGAAAGTAAAAAATGTCATT........................................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................GAGCTATGGCCTGGACAGGCAT..................................................................2211.0010000000001
........................................................................................................................................................................................................................................................TGGATACGATATCTTGCGGCTGGTT.....................................................................................................................2511.0010100000000
...................................................................................................................................................................................................................................................TAAAATGGATACGATATCTTGCGGC..........................................................................................................................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................GAAAAGTCAAAATACCAAG.............1911.0010100000000
............................................................................................................................................................................................................................................................................................................CCGAGCTATGGCCTGGACAGGCATTTTCC.............................................................2911.0010010000000
......................................................................................................................................................................................................................................................AATGGATACGATATCTTGCGG...........................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................TTTCCTTGAAAGTAAAAAATGTCA..........................................2411.0010010000000
...............................................................................................................................................................................................................................................................GATATCTTGCGGCTGGTTTAG..................................................................................................................2111.0010000100000
..............................................................................................................................................................................................................................................................................................................GAGCTATGGCCTGGACAGGC....................................................................2011.0010010000000
....................................................................................................................................................................................................................................................................CTTGCGGCTGGTTTAGT-------------GA..................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................CTTGCGGCTGGTTTAGT-------------GAAATTCAG...........................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................TAGT-------------GAAATTCAGGCCGAGCTATGGC..............................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................AGTCAAAATACCAAGATATTC-A.....2211.0010100000000
droPer2
ATAGTTC-AAT-----------------------------------------------------------------------------------------------TTCATTTTGTTTTT--------------------------------TTTTCTA---------------------------------------------------------------------------------TTATAACATGGATACGATATCTTGCGGCTGGTTTAGT-------------GAAATTCAGGCCGAGCTATGGCCTGGACAGGCATTTTCCTTGAAAGTAAAAAATGTCATTCATA--AAGAAAAGTCAAAATACCAAGATATTC-AAA-TASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................ATACGATATCTTGCGGCT.........................................................................................................................1817.007700000
..........................................................................................................................................................................................................................................................GATACGATATCTTGCGGCT.........................................................................................................................1914.004400000
............................................................................................................................................................................................................................................................................................................CCGAGCTATGGCCTGGACA.......................................................................1912.002200000
.............................................................................................................................................................................................................................................................................................................CGAGCTATGGCCTGGACAGGCAT..................................................................2312.002200000
.................................................................................................................................................................................................................................................TATAACATGGATACGATATCTTGCGGCT.........................................................................................................................2812.002200000
.............................................................................................................................................................................................................................................................................................................CGAGCTATGGCCTGGACA.......................................................................1811.001100000
.............................................................................................................................................................................................................................................................................................................CGAGCTATGGCCTGGACAGGCATT.................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................CGAGCTATGGCCTGGACAG......................................................................1911.001100000
.................................................................................................................................................................................................................................................TATAACATGGATACGATATCTTGCGGCTT........................................................................................................................2911.001100000
...........................................................................................................................................................................................................................................................ATACGATATCTTGCGGCG.........................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................GATACGATATCTTGCGGCC.........................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................ATACGATATCTTGCGGCC.........................................................................................................................1820.501100000
droAna3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGGTTCAGC-------------GAACTGCAGGCTGATCTATGGCCTGGACAGTCCTTCTCCTTGAAAGTAAAGGAAGTCATTCACA--AGGAGAAGTCAAAGTTTCAGGACATTC-AAA-TCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................TGGCCTGGACAGTCCTTCTCCT............................................................2212.002020000
...........................................................................................................................................................................................................................................................................................................................................GAAAGTAAAGGAAGTCATTCACA--AGGA..............................2711.001010000
............................................................................................................................................................................................................................................................................................................CTGATCTATGGCCTGGACA.......................................................................1911.001010000
.............................................................................................................................................................................................................................................................................................................TGATCTATGGCCTGGACAGTCCTTCTCCT............................................................2911.001010000
..........................................................................................................................................................................................................................................................................GATGGTTCAGC-------------GAACTGCAGGC.........................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................GTAAAGGAAGTCATTCAC.....................................1811.001001000
..............................................................................................................................................................................................................................................................................................................................................................CACA--AGGAGAAGTCAAAGTT..................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................GTCATTCACA--AGGAGAAGTCAAAGT...................2511.001010000
...............................................................................................................................................................................................................................................................................TTCAGC-------------GAACTGCAGGCTGATCTATGGCC.............................................................................2911.001100000
...........................................................................................................................................................................................................................................................................................................................................................ATTCACA--AGGAGAAGTCAAAGTTTCAG..............2711.001010000
droBip1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACCAATGGATTCCCTTAACAACGGATGGTTCAGC-------------GAACTGCAGGCCGACCTATGGCCTGGACAGTCCTTCTCCTTGAAAGTAAAGGAAGTCATTCACA--AGGAGAAGTCAAAGTTTCAGGACATTC-AAA-TCSizeHit CountTotal NormTotal
No Reads
droKik1
AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAATGGATTCCTTAACTAACGGATGGTTCAGC-------------GAACTCCAGGCCGAGCTGTGGCCCGGACAGTCCTTTTCCCTGAAGGTCAAGGAAGTAATCCACA--AAGAACGTTCCAAGTTCCAGGACATCC-AAA-TTSizeHit CountTotal NormTotal
No Reads
droFic1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTAACTAACGGATGGTTCAGC-------------GAACTGCAGGCCGATCTGTGGCCTGGCCAGTCATTCTCCTTGAAAGTTAAGGAGGTAATTCACA--AAGAAAAGTCAAAATTCCAGGACATTC-AGA-TTSizeHit CountTotal NormTotal
No Reads
droEle1
GGGCTTATTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATCTTAAATCTTTAATCTAAATTTATTACAACAGTCTAATGTTGAGAAATGATAATTAA---ATAATTTAAAACAGTTATTTATTTACAATTCGATTTACTAATATATACTTAAAAAA-AATACATTTTTAAATATAT-AAA-TGSizeHit CountTotal NormTotal
No Reads
droRho1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAATGGATTCCCTAACTAACGGATGGTTCAGC-------------GAACTACAGGCCGAACTCTGGCCTGGACAGTCCTTCTCCCTTAAAATCAAGGAATTGATCCATA--AGGAAAAGTCGAAATTCCAGGATATCC-AGG-TTSizeHit CountTotal NormTotal
No Reads
droBia1
TTATTTTCGAT-----------------------------------------------------------------------------------------------TTT-----------TTGACACAGATAAGAATAACAGTGCGCATCAGTG-ATAAGTT----------------------------------ATT-TGCT-----------------------------GTAAAA-T------TAAGTTTTAATTTCAAAATGGTA------------------------------------------------GG-----------GGAGCTAAAAAATGTTATTCGTA--GAGAAGA-----------AGGGTATTCTAGATTCSizeHit CountTotal NormTotal
No Reads
droTak1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTAAATAACGGATGGTTCAGC-------------GAGCTGCAGGCCGAGCTCTGGCCGGGACAGTCCTTCTCCCTGAAAGTCAAGGAGGTGATCCACA--AGGAGAAGTCCAAGTTCCAGGACATTC-AGA-TTSizeHit CountTotal NormTotal
No Reads
droEug1
AAGCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTAACTAACGGTTGGTTCAGC-------------GAACTGCAGGCCACTCTTTGGCCTGGGCAGTCCTTCTCCCTGAAAGTCAAGGAGGTTCTTCATA--CTGAAAAGTCCAAGTACCAGGACATTC-AGA-TTSizeHit CountTotal NormTotal
No Reads
dm3
AAAGTGT-T-------------------------------------------------------------------------------------------------T-------------TT----------------------------------------------------------------------------------------------------------------------GATACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAAGACACAC-AA----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....GT-T-------------------------------------------------------------------------------------------------T-------------TT----------------------------------------------------------------------------------------------------------------------GATACAGATGG-------------------------------------------------------------------------------------------------------------------AAA.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000
........T-------------------------------------------------------------------------------------------------T-------------TT----------------------------------------------------------------------------------------------------------------------GATACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAAGA............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................ATACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAAG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................AGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAAGA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........T-------------------------------------------------------------------------------------------------T-------------TT----------------------------------------------------------------------------------------------------------------------GATACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................CAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAAGACACAA-TC----2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAA..............2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACAGATGG-------------------------------------------------------------------------------------------------------------------AAATTGACAA..............1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
droSim2
TAAAATGTCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTTCCC-------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATCGAT------------------------------------------------------------------AATAATTAATTTGTTTAAAATTCCATTGTATTTTCCTAA--AGTACATATTGAATTGGTAAA-------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACAC--------------------------------------------------------GCTTTTGGCGCAAAG-CCCCTTTTCCTTTAAGTCTGAG-TTATCTC---------------------------------------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATGGATTCCCTTAACAACGGATGGTTTAGC-------------GAACTGCAGGCCGATCTCTGGCCTGGTCAGTCCTTCTCCCTGAAAGTCAAGGAGGTCATCCACA--AGGAGAAGTCCCAGTTCCAGGACATCC-AGA-TCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................AACGGATGGTTTAGC-------------GAACTGCAGGC.........................................................................................2612.0020101000
..................................................................................................................................................................................................................................................AACAAATGGATTCCCTTAACAACGGATG........................................................................................................................2811.0010100000
....................................................................................................................................................................................................................................................................ACAACGGATGGTTTAGC-------------G...................................................................................................1811.0010000010
..........................................................................................................................................................................................................................................................................GATGGTTTAGC-------------GAACTGC.............................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................AGAAGTCCCAGTTCCAGGAC...........2011.0010100000
...............................................................................................................................................................................................................................................................................TTTAGC-------------GAACTGCAGGCCGAT.....................................................................................2111.0010000100
..................................................................................................................................................................................................................................................................................................................TCTGGCCTGGTCAGTCCTTCTCC.............................................................2311.0010100000
...................................................................................................................................................................................................................................................................................................................................................AGGAGGTCATCCACA--AGGAG.............................2011.0010001000
.....................................................................................................................................................................................................................................................................CAACGGATGGTTTAGC-------------GAACTGCAGGC.........................................................................................2711.0010100000
.........................................................................................................................................................................................................................................................................GGATGGTTTAGC-------------GAACTGC.............................................................................................1911.0010100000
.................................................................................................................................................................................................................................................................................................................................................................A--AGGAGAAGTCCCAGTTCCAGGA............2311.0010001000
...........................................................................................................................................................................................................................................................................ATGGTTTAGC-------------GAACTGCAG...........................................................................................1911.0010000010
..............................................................................................................................................................................................................................................................................................................GATCTCTGGCCTGGTCAGTCCTT.................................................................2311.0011000000
............................................................................................................................................................................................................................................................................TGGTTTAGC-------------GAACTGCAGGC.........................................................................................2011.0010100000
.................................................................................................................................................................................................................................................................................................................................................................A--AGGAGAAGTCCCAGTTCCAG..............2111.0010001000
....................................................................................................................................................................................................................................................CAAATGGATTCCCTTAAC................................................................................................................................1811.0010100000
..............................................................................................................................................................................................................................................................................GTTTAGC-------------GAACTGCAGGC.........................................................................................1811.0010100000
..............................................................................................................................................................................................................................................................CCCTTAACAACGGATGGT......................................................................................................................1811.0010000010
..............................................................................................................................................................................................................................................................................................................GATCTCTGGCCTGGTCAGTCCTTCTCCC............................................................2811.0011000000
..................................................................................................................................................................................................................................................................................AGC-------------GAACTGCAGGCCGATCTCT.................................................................................2211.0010100000
.....................................................................................................................................................................................................................................................AAATGGATTCCCTTAACAACGGA..........................................................................................................................2311.0010100000
..............................................................................................................................................................................................................................................................................................................GATCTCTGGCCTGGTCAGTC....................................................................2011.0010100000
..........................................................................................................................................................................................................................................................................GATGGTTTAGC-------------GAACTGCAGG..........................................................................................2111.0010000010

Generated: 05/16/2015 at 11:14 PM