ID:

dvi_9751

 Coordinate:

scaffold_12958:2011764-2011914 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.5 -11.4 -11.4

Flybase annnotation

exon [dvir_GLEANR_11177:3]; CDS [Dvir\GJ11187-cds]; intron [Dvir\GJ11187-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAAATATATTTATTTTATGGCTATATGCCAGAACATATAGTTGCACAAAAGCAATAAAGCATTAAACAATAAAGCAACTAAAGGCGAAATATGTGGAAAATTCGTGTCTAAATTTAAAGCAAAAAGCTTGGACCGGATAAGGCCGGGAAATACTATTTGTATATATTATTGATTAGCTTTTTTGTGTTCTTTATCAACAGCGAAGGAGGATTCTTCAAAGCGCATTTATACTTTCCAAAGGAGTACCCGC
****************************************************************************..................(((...(((((.(((((.......(((.....)))))))))))))....))).........************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M061
embryo
 M047
female body
 SRR060687
9_0-2h_embryos_total
 V053
head
 V116
male body		 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 M028
head
 SRR060663
160_0-2h_embryos_total
..........................................................................................................................................................................TGGTTAGCTTTTTTGTGTTC............................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TTGATTAGCTTGTTTGTGGT.............................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GATTCTTCAAAGCGCATTTA...................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GAAGGAGGATTCTTCAAAGCGC........................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................AACTAAAGGCGAAATATGTGGAAAATTC................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................AGCTTTTTTGTGTTCTATTTCA...................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................CTTGGACCGGATAAGGCCGGGAAATACT................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGCGCATTTATACTTTCCAAAGGA........ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................GAAATATGTGGAAAATTCGTGTCTAAAT......................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTACGAAGGAGGATTCTTCAAAGC............................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CCGAAGGAGGATTCTTCAAAG.............................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................ACGAAGGAGGATTCTTCAAAGCC............................ 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTGATTAGCTTGTTGGTG................................................................ 18 2 20 0.80 16 0 0 8 0 0 0 0 0 0 0 0 0 7 1
.........................................................................................................................................................................TTGATTAGCTTGTTTGTGTG.............................................................. 20 2 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACAGCTTGGACAGGATAGGGC........................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................TATACTTTCCCACGGAGTACCA.. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTTTGATTAGCTTTTTTGT................................................................. 19 2 16 0.44 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTGATTAGCTTGTTGGTGTT.............................................................. 20 2 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CAAAAAGCCAGGACCGGA................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTGTTCGTTATCTACAGC................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGTTTGATTAGCTTTTTTGT................................................................. 20 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GCTTGGACCGCATATGGC........................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTTTGATTAGCTTTTTGGTGTT.............................................................. 22 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GATTAGCTTTTTTGTGGGGT............................................................ 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGCTTGTACAGGATAGGGC........................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................GAGCCGATAAGGACGGGA...................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTGATTAGCTTGTTGGTGGT.............................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTTTATATAAATAAAATACCGATATACGGTCTTGTATATCAACGTGTTTTCGTTATTTCGTAATTTGTTATTTCGTTGATTTCCGCTTTATACACCTTTTAAGCACAGATTTAAATTTCGTTTTTCGAACCTGGCCTATTCCGGCCCTTTATGATAAACATATATAATAACTAATCGAAAAAACACAAGAAATAGTTGTCGCTTCCTCCTAAGAAGTTTCGCGTAAATATGAAAGGTTTCCTCATGGGCG
************************************************************************************************..................(((...(((((.(((((.......(((.....)))))))))))))....))).........**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
...............................................................................................................................................................................................................TCCTATGTAGTTTCACGTAAAT...................... 22 3 2 0.50 1 1
..........................................................................................................CAGATCTAAATTTCGT................................................................................................................................. 16 1 5 0.20 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12958:2011714-2011964 + dvi_9751 AAAAATATATTTATTTTATGGCTATATG---------------------------------------------------------------CC----------------AGAACATATAGTTGCACAAAAGCAATAAAGCATTAAACAAT-----------------A--AAGC-----------------------------------------------------------------------AACTAAAGGCGAAATATGTGGAAAATTCGTG---------------------------TCTAAATTTAAAGCAAAAAGCTT----GGACCGGATAAGGCCGGGAAATACTATTTGTATATATTATTGATTAG---------------------------------------------CTTTTTTGTGTTC---T-TTATCAACAGCGAAGGAGGATTCTTCAAAGCGCATTTATACTTTCCAAAGGAGTACCCGC
droMoj3 scaffold_4286:4328-4557 - AAGAATATATATACTTTGTG----------------------------------------------------------------GGGTCTGCCACGCCTCCTTCTGCCTGTTACATACATTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATA-AAAATAA-----------------------------------------------GACAAAAATTACGAAATAC-------------------AAAATTGGTGA-TTACGTTT-------------------------------------------------------------------------------------------------------------TGATAAAAAGTGAAGAGCGGCATCAGACAAA--------------ACTGGATCC-----C----AAATTTAAGGGACCATTTGTAGTTACTGA------ATTGCT
droGri2 scaffold_15116:362554-362637 - TAATATTGATATCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT--TTC----------------------------------------------------------------------------------------------------------------------------------------------TTATCAACAGTGAAGGAGGTTTCTTCAAAGCGCATTTATACTTTCCTAAGGAGTACCCCC
droWil2 scf2_1100000004937:104066-104225 - AAGAATATATATACTTTGTG----------------------------------------------------------------GGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTTGGCGACTTTAATATACCATTTCACCCT-------ATGGGTGTATGGTATA-AAAATGATACGTGTG------------------------------------------------------------------GAAATATGTGAACAATACATG---------T-------------------------------------------------------------------------------------------------------------GTAA-----------------------------------------AGA-------------------------------------------CAGAACAAAATGCT
dp5 2:25166158-25166249 - AATACTTTTTG-------------------------------------------------------------------------GATTT---------------------------------------A-----------------------------------------------------------------------------------------------------------------------------TTA-------------------AA--------TGTTATT--TCT----------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGCAGTGAAGGAGGCTTTTTTAAAGCACATCTCTATTTCCCCAAAGAATATCCTT
droPer2 scaffold_6:471319-471466 - ACTTAAGATAAGT---------------AA--CTTGTTTTACAGTCGGATTAATCGGCTATATTATAAATGTTTATACTTCTTGGATTT---------------------------------------A-----------------------------------------------------------------------------------------------------------------------------TTA-------------------AA--------TGTTATT--TCT----------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGCAGTGAAGGAGGCTTTTTTAAAGCACATCTTTATTTCCCCAAAGAATATCCGT
droAna3 scaffold_13230:1430761-1430930 - AAGAATATATTTAGTTTAGAGATAAATG---------------------------------------------------------------CC------------------------------TTAAAAAATAATATACCC-----------------------------ATA-TGAATAA-----------------------------------------------TATGTATATTATGATATATATAATAGCTACATATATAAATAATTTATA--------------GCTTATAT----------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGACAAAGTTATAAAAAAATGCTTGTGTATGT----ATGCGTTTAGCTT
droBip1 scf7180000394972:7923-8024 + TATTATTTATAAT---------------AA--AATGTTT------------------------TACTCGTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATG--CAT----------------------------------------------------------------------------------------------------------------------------------------------TTACCCACAGCGAAGGAGGATTTTTTAAGGCACATCTTTACTTTCCAAAAGAATACCCTT
droKik1 scf7180000302479:80995-81116 + CGATAGCAAAAATTTTTCGA----------------------------------------------------------------AAACCGGAGCAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACGA-------------------AA--------TCGTACG--ATTTCGCCCGTA-----AACGAAAAAATTTTACGATTACCGGAGCAGGCCTGAAAATATTTTTTTT----------------------------------------------------------------------------------------------------------------AT-----------------ATATGATT
droFic1 scf7180000453777:5720-5828 - ATATGCCCAAGAAT------------------------------------------------------------------------------------------------------ATGCATTCAAAAATACAATAAAATATGAAAGAAT-----------------C--ATGC-AAAA-----------------------------------------------AATA-------------------------------------------GTCA-TAATATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAAGGGGGTTCTTT-----------------TTTTAAAAGCTAAAGTTT
droEle1 scf7180000491337:15471-15620 + AAGAATATACC---------------------------------------------------------------------------------------------------------------------------------CTTTTACTCT-------ACGTGTAACG--------TAATTATACACGTTGAAATCTAAAGTAAAAAACATTTAAACTAAATTAAAAAA-------------------------------------------------------------------------------------------A---------------------------------------------------------AAAAATAGAATTAAGTAAATC-----------------------------------------GATAAATGCAGTGGGTAAATACAAATTTGAGCTTGTACT-----------------AGGTA
droRho1 scf7180000779131:11297-11423 - CAACAGAATTGTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAAATATTTCCAAAAATAATA---------------------------TTTACAGTTGGGGTCAAAATAAT----GGACACGAAGAGGCCG-------------------------------AAATGTAATG------------------------------------------------------------------------TCAATTAATTGCATATCTGTAATT---CAAATCAAAAGTGA
droBia1 scf7180000302125:23149-23250 - ACTGTTTAGATAA-------------------CCTGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAA---------------------------------------------TAATACTATATTTTATT-TTACCCGCAGCGAAGGAGGTTTTTTCAAGGCACATCTTTACTTCCCCAAAGAATACCCTT
droTak1 scf7180000410722:6496-6658 - AAGAATATATATACTTTATG----------------------------------------------------------------GGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTTTTGCACGAATACAATATACCCTTTTACTCT-------ACGAGTAACGGGTATA-AAA-------------------------------------------------AG-------------------------------------------------------------------------------------------T---------------------------------------------------------AGATATGTTGTTACGTGGGCA-----------------------------------------TATTAGTGCCCTAGTCCTGA---------------------------AAGGACTTGGGCCG
droEug1 scf7180000408157:7654-7758 - AAATAATAACTGT---------------AAAAAATGTTA---------------------------------------------------TAAATATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCTTATTC----------------------------------------------------------------------------------------------------------------------------------------------TTACCCACAGCGAAGGAGGTTTCTTTAAAGCACATCTTTACTTCCCCAAAGAATATCCAT
dm3 chr3L:24028459-24028581 + AAATACGATTTTTTTA----------------------------------------------------------------------------------------TATTTAATATTTATAATTTTATAATAATAAAATAATT-------------------------------------------------------------------------------------------------------------------------------------------------TCTTTAT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAAGAATATCCGT
droSim2 2r:1015231-1015344 + AATACGATTTT---------------------------------------------------GTATTATTATTTTG---------------------------------------TATTCATATATTCA-----------------------------------------------------------------------------------------------------------------------------AAT-------------------AA--------TCTTTCT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAGGAATATCCGT
droSec2 scaffold_64:132322-132391 + TCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAGGAATATCCGT
droYak3 v2_chrUn_6532:1050-1146 - AAAAATATATATATTATATGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGTATATATAAATTAAT-----------------------------------------------------------------------------------------------------------------------------------------ATAA-TTATATAT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AATAT
droEre2 scaffold_4784:23478412-23478474 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------TTACCCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAGGAATATCCGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAAAATATATTTATTTTATGGCTATATG---------------------------------------------------------------CC----------------AGAACATATAGTTGCACAAAAGCAATAAAGCATTAAACAAT-----------------A--AAGC-----------------------------------------------------------------------AACTAAAGGCGAAATATGTGGAAAATTCGTG---------------------------TCTAAATTTAAAGCAAAAAGCTT----GGACCGGATAAGGCCGGGAAATACTATTTGTATATATTATTGATTAG---------------------------------------------CTTTTTTGTGTTC---T-TTATCAACAGCGAAGGAGGATTCTTCAAAGCGCATTTATACTTTCCAAAGGAGTACCCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTTCAAAGCGCATTTA......................2011.001000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGATTCTTCAAAGCGC...........................2211.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................AACTAAAGGCGAAATATGTGGAAAATTC...................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CTT----GGACCGGATAAGGCCGGGAAATACT.................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCATTTATACTTTCCAAAGGA........2411.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GAAATATGTGGAAAATTCGTG---------------------------TCTAAAT..............................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAGAATATATATACTTTGTG----------------------------------------------------------------GGGTCTGCCACGCCTCCTTCTGCCTGTTACATACATTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATA-AAAATAA-----------------------------------------------GACAAAAATTACGAAATAC-------------------AAAATTGGTGA-TTACGTTT-------------------------------------------------------------------------------------------------------------TGATAAAAAGTGAAGAGCGGCATCAGACAAA--------------ACTGGATCC-----C----AAATTTAAGGGACCATTTGTAGTTACTGA------ATTGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................TTCTGCCTGTTACATACATTT..........................................................................................................................................................................................................................................................................................................................................................................................21200.306600000
..............TTTGTG----------------------------------------------------------------GGGTCTGCCACGCCTCCTTC............................................................................................................................................................................................................................................................................................................................................................................................................26200.204040000
..................TG----------------------------------------------------------------GGGTCTGCCACGCCTCCTTCTGCC........................................................................................................................................................................................................................................................................................................................................................................................................26200.204000040
.................................................................................................................................................................................................................................................AAATAC-------------------AAAATTGGTGA-TTACGTT.......................................................................................................................................................................................................................24130.152200000
...........................................................................................................CTGTTACATACATTTCAAC......................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
droGri2
TAATATTGATATCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT--TTC----------------------------------------------------------------------------------------------------------------------------------------------TTATCAACAGTGAAGGAGGTTTCTTCAAAGCGCATTTATACTTTCCTAAGGAGTACCCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAGAATATATATACTTTGTG----------------------------------------------------------------GGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTTGGCGACTTTAATATACCATTTCACCCT-------ATGGGTGTATGGTATA-AAAATGATACGTGTG------------------------------------------------------------------GAAATATGTGAACAATACATG---------T-------------------------------------------------------------------------------------------------------------GTAA-----------------------------------------AGA-------------------------------------------CAGAACAAAATGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............ACTTTGTG----------------------------------------------------------------GGGTCGGAGATGCTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................26200.10200020
..................................................................................................................................TTAATATACCATTTCACCCT-------ATGGGTG................................................................................................................................................................................................................................................................................................................................................27200.10202000
......ATATATACTTTGTG----------------------------------------------------------------GGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
..........ATACTTTGTG----------------------------------------------------------------GGGTCGGAGATGCTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100
................TGTG----------------------------------------------------------------GGGTCGGAGATGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100
............................................................................................................TGTTACATACATTTTGGCGACTTTAAT.............................................................................................................................................................................................................................................................................................................................................................................27200.05101000
........................................................................................................................................TACCATTTCACCCT-------ATGGGTGTATG............................................................................................................................................................................................................................................................................................................................................25200.05101000
dp5
AATACTTTTTG-------------------------------------------------------------------------GATTT---------------------------------------A-----------------------------------------------------------------------------------------------------------------------------TTA-------------------AA--------TGTTATT--TCT----------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGCAGTGAAGGAGGCTTTTTTAAAGCACATCTCTATTTCCCCAAAGAATATCCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCTCTATTTCCCCAAAGA........2311.0010100000000
...............................................................................................................................................................................................................................................................................................GTTATT--TCT----------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGCAG..................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCACATCTCTATTTCCCCAAAGA........2711.0010100000000
droPer2
ACTTAAGATAAGT---------------AA--CTTGTTTTACAGTCGGATTAATCGGCTATATTATAAATGTTTATACTTCTTGGATTT---------------------------------------A-----------------------------------------------------------------------------------------------------------------------------TTA-------------------AA--------TGTTATT--TCT----------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGCAGTGAAGGAGGCTTTTTTAAAGCACATCTTTATTTCCCCAAAGAATATCCGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTCCCCAAAGAATATCCGT2411.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGCACATCTTTATTTCCCCAAAGA........3011.001001000
droAna3
AAGAATATATTTAGTTTAGAGATAAATG---------------------------------------------------------------CC------------------------------TTAAAAAATAATATACCC-----------------------------ATA-TGAATAA-----------------------------------------------TATGTATATTATGATATATATAATAGCTACATATATAAATAATTTATA--------------GCTTATAT----------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGACAAAGTTATAAAAAAATGCTTGTGTATGT----ATGCGTTTAGCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATTATTTATAAT---------------AA--AATGTTT------------------------TACTCGTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATG--CAT----------------------------------------------------------------------------------------------------------------------------------------------TTACCCACAGCGAAGGAGGATTTTTTAAGGCACATCTTTACTTTCCAAAAGAATACCCTTSizeHit CountTotal NormTotal
No Reads
droKik1
CGATAGCAAAAATTTTTCGA----------------------------------------------------------------AAACCGGAGCAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACGA-------------------AA--------TCGTACG--ATTTCGCCCGTA-----AACGAAAAAATTTTACGATTACCGGAGCAGGCCTGAAAATATTTTTTTT----------------------------------------------------------------------------------------------------------------AT-----------------ATATGATTSizeHit CountTotal NormTotal
No Reads
droFic1
ATATGCCCAAGAAT------------------------------------------------------------------------------------------------------ATGCATTCAAAAATACAATAAAATATGAAAGAAT-----------------C--ATGC-AAAA-----------------------------------------------AATA-------------------------------------------GTCA-TAATATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAAGGGGGTTCTTT-----------------TTTTAAAAGCTAAAGTTTSizeHit CountTotal NormTotal
No Reads
droEle1
AAGAATATACC---------------------------------------------------------------------------------------------------------------------------------CTTTTACTCT-------ACGTGTAACG--------TAATTATACACGTTGAAATCTAAAGTAAAAAACATTTAAACTAAATTAAAAAA-------------------------------------------------------------------------------------------A---------------------------------------------------------AAAAATAGAATTAAGTAAATC-----------------------------------------GATAAATGCAGTGGGTAAATACAAATTTGAGCTTGTACT-----------------AGGTASizeHit CountTotal NormTotal
No Reads
droRho1
CAACAGAATTGTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAAATATTTCCAAAAATAATA---------------------------TTTACAGTTGGGGTCAAAATAAT----GGACACGAAGAGGCCG-------------------------------AAATGTAATG------------------------------------------------------------------------TCAATTAATTGCATATCTGTAATT---CAAATCAAAAGTGASizeHit CountTotal NormTotal
No Reads
droBia1
ACTGTTTAGATAA-------------------CCTGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAA---------------------------------------------TAATACTATATTTTATT-TTACCCGCAGCGAAGGAGGTTTTTTCAAGGCACATCTTTACTTCCCCAAAGAATACCCTTSizeHit CountTotal NormTotal
No Reads
droTak1
AAGAATATATATACTTTATG----------------------------------------------------------------GGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTTTTGCACGAATACAATATACCCTTTTACTCT-------ACGAGTAACGGGTATA-AAA-------------------------------------------------AG-------------------------------------------------------------------------------------------T---------------------------------------------------------AGATATGTTGTTACGTGGGCA-----------------------------------------TATTAGTGCCCTAGTCCTGA---------------------------AAGGACTTGGGCCGSizeHit CountTotal NormTotal
No Reads
droEug1
AAATAATAACTGT---------------AAAAAATGTTA---------------------------------------------------TAAATATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCTTATTC----------------------------------------------------------------------------------------------------------------------------------------------TTACCCACAGCGAAGGAGGTTTCTTTAAAGCACATCTTTACTTCCCCAAAGAATATCCATSizeHit CountTotal NormTotal
No Reads
dm3
AAATACGATTTTTTTA----------------------------------------------------------------------------------------TATTTAATATTTATAATTTTATAATAATAAAATAATT-------------------------------------------------------------------------------------------------------------------------------------------------TCTTTAT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAAGAATATCCGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGATTCTTTAAAGCTCA..........................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTAAAGCTCATCTTTACTTT................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTCTTTAAAGCTCATCTT......................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTTTACTTTCCTAAAGAATATCCGT2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTAAAGCTCATCTTTACTTTCC..............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTCATCTTTACTTTCCTAAAGAA.......2712.0020000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTACTTTCCTAAAGAATATCCGT2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGAAGGAGGATTCTTTAAAGC.............................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGATTCTTTAAAGCTC...........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGCAGCGAAGGAGGATTCTTT..................................2512.0020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTA.................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTTACTTTCCTAAAGAATATCCGT2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTCATCTTTACTTTCCT.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGATTCTTTAAAGCTC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATT......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTTTACTTTCCTAA...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGAGGATTCTTTAAAGCTC...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTCTTTAAAGCTCATCT.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCGAAGGAGGAT.......................................1811.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGATTCTTTAAAGCTCATC........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TAT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGA........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGAAGGAGGATTCTTTAAAGC.............................2511.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCTCATCTTTACTTTCCTAAAGA........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGT............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTTCCTAAAGAATA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGATTCTTTAAAGCTCATCTT......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTCTTTAAAGCTCATCTTTAC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGAGGATTCTTTAAAGC.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCTTTAAAGCTCATC........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGATTCTTTAAAGCTCATC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGG.........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGATTCTTTAAAGCTCATC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCAGCGAAGGAGGATTCTTT..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTACTTTCCTAAAGAATATCCGT2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTACTTTCCTAAAGAATATC...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGATTCTTTAAAGCT............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AATACGATTTT---------------------------------------------------GTATTATTATTTTG---------------------------------------TATTCATATATTCA-----------------------------------------------------------------------------------------------------------------------------AAT-------------------AA--------TCTTTCT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAGGAATATCCGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTCATCTTTACTTTCCTAAGGAA.......2815.00500000003200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTCATCTTTACTTTCCTAAGGAA.......2714.00400000010120000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGCTCATCTTTACTTTCCTAAGGA........2813.00300000011100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCTTTACTTTCCTAAGGA........2312.00200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTCATCTTTACTTTCCTAAGGA........2712.00200000001010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCTCATCTTTACTTTCCTAAGGA........2912.00200000001100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATTCTTTAAAGCTC...........................1811.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTCTTTAAAGCTCATCTTTACTT.................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTACTTTCCTAAGGAATATCCG.2511.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGCTCATCTTTACTTTCCTAAGGG........2811.00100100000000000000
AATACGATTTT---------------------------------------------------GTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTAAAGCTCATCTTTACTTTC...............2511.00100010000000000000
droSec2
TCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--TTT----------------------------------------------------------------------------------------------------------------------------------------------TTAATCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAGGAATATCCGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAAATATATATATTATATGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGTATATATAAATTAAT-----------------------------------------------------------------------------------------------------------------------------------------ATAA-TTATATAT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------A....24120.831000010090000
.............................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------A....22130.62800100070000
.................ATGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................26180.5610000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAAAAAATGATGG------------------------------------A....20130.46600000060000
...............ATATGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................28180.44800000080000
...............ATATGAATACAGG---------------------------------------------------------------AA----------------AAAAT..................................................................................................................................................................................................................................................................................................................................................................................................20180.39700000070000
.............................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AAT..24130.23300000030000
..........................................................................................................................................................................................................................................................................................ATAT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------A....28110.18200000020000
................TATGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................27180.17300000030000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AAT..28120.17200000020000
...............ATATGAATACAGG---------------------------------------------------------------AA----------------AAAATAT................................................................................................................................................................................................................................................................................................................................................................................................22180.17301000020000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------A....26120.17200000020000
............................................................................................................................................................................................................................................................................................................................................................................................................CAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------A....23120.17200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAAAAAATGATGG------------------------------------.....19130.15201000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAAAAAATGATGG------------------------------------AATAT24130.15200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAAAAAATGATGG------------------------------------AAT..22130.15200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------.....21130.15200000020000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAA...................................................15160.13200000000002
............ATTATATGAATACAGG---------------------------------------------------------------AA----------------AAAAT..................................................................................................................................................................................................................................................................................................................................................................................................23180.11200000020000
..............TATATGAATACAGG---------------------------------------------------------------AA----------------AAAAT..................................................................................................................................................................................................................................................................................................................................................................................................21180.11200000020000
...................GAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................24180.11200000020000
............ATTATATGAATACAGG---------------------------------------------------------------AA----------------AA.....................................................................................................................................................................................................................................................................................................................................................................................................20200.10201000010000
.....................ATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................22200.10200000020000
......................TACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................21200.10200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------.....23120.08100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAT-----------------------------------------ATAAAGGAAAAAATGATG..........................................22120.08100100000000
.............................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------A....25120.08100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................CAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AATA.26120.08100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AAT..26120.08100000100000
..........................................................................................................................................................................................................................................................................................ATAT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAAT..............................................22120.08101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AA...25120.08100000010000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AATA.29120.08100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................CAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AAT..25120.08100000010000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGAT...........................................23120.08100000010000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------.....25120.08100000010000
............................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------------------------------------------------------ACAT-----------------------------------------ATAAAGGAAAAAAT..............................................20130.08100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------ATAAAGGAAAAAATGATGG------------------------------------AA...23130.08100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAAAAAATGATGG------------------------------------AAT..21160.06100000010000
........ATATATTATATGAATACAGG---------------------------------------------------------------AA----------------AAAA...................................................................................................................................................................................................................................................................................................................................................................................................26180.06100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAAAAAATGATGG------------------------------------AAT..20180.06100000010000
..................TGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................25180.06100000010000
..............TATATGAATACAGG---------------------------------------------------------------AA----------------AAAATAT................................................................................................................................................................................................................................................................................................................................................................................................23180.06101000000000
...............ATATGAATACAGG---------------------------------------------------------------AA----------------AAAATA.................................................................................................................................................................................................................................................................................................................................................................................................21180.06100000010000
................TATGAATACAGG---------------------------------------------------------------AA----------------AAAATC.................................................................................................................................................................................................................................................................................................................................................................................................20180.06100000100000
.................ATGAATACAGG---------------------------------------------------------------AA----------------AAAAT..................................................................................................................................................................................................................................................................................................................................................................................................18180.06100010000000
............ATTATATGAATACAGG---------------------------------------------------------------AA----------------AAAATAT................................................................................................................................................................................................................................................................................................................................................................................................25180.06100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAAAAATGATGG------------------------------------AAT..19180.06100000010000
.................ATGAATACAGG---------------------------------------------------------------AA----------------AAAATAT................................................................................................................................................................................................................................................................................................................................................................................................20180.06100000010000
.............TTATATGAATACAGG---------------------------------------------------------------AA----------------AAAATATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................29180.06100000010000
......................TACAGG---------------------------------------------------------------AA----------------AAAATATATAAGTATA.......................................................................................................................................................................................................................................................................................................................................................................................24190.05100000010000
............ATTATATGAATACAGG---------------------------------------------------------------AA----------------AAA....................................................................................................................................................................................................................................................................................................................................................................................................21190.05100000010000
.....................ATACAGG---------------------------------------------------------------AA----------------AAAATATATAAGTATAT......................................................................................................................................................................................................................................................................................................................................................................................26190.05100000010000
......ATATATATTATATGAATACAGG---------------------------------------------------------------AA----------------.......................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000
........................CAGG---------------------------------------------------------------AA----------------AAAATATATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................19200.05100000010000
droEre2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------TTACCCGCAGCGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAGGAATATCCGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACTTTCCTAAGGAATATC...2211.0010100000

Generated: 05/16/2015 at 11:08 PM