ID:

dvi_9748

 Coordinate:

scaffold_12958:2005380-2005530 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_11177:2]; CDS [Dvir\GJ11187-cds]; intron [Dvir\GJ11187-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGTAAAAAAAAAAATAAATAAAAGTTTTATGTTTTACTTTCTTTTAAGATAATAGTCTTTGGATAATGATAAATAATTTAAGACTGATATTTAAGATAAACTGGTTTATAACCTTTATTAAAACATATAGAAACGATATATATATATATACATACATATATATTTAATATAAAAAATACTTACCATTTCTTTCATTTCAGAACTAAATAAAAACCCTGTAGAAGGTTTCTCAGCTGGATTAATTGATGAA
**************************************************...(((((((.((((.((.....)).)))))))))))........((((((..((((...))))))))))......((((.....(((((((((.(((....))).)))))))))...)))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060660
Argentina_ovaries_total
 M028
head
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR1106717
embryo_6-8h
 SRR1106718
embryo_6-8h
 SRR1106720
embryo_8-10h
 SRR060687
9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 V047
embryo
 M047
female body
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
................................................................................................................................................................................................................................GGTTTCTCAGCTGGATTAATTGAT... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCTG.............. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCT............... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAAGGTTTCTCAGCTGGATTAATTGAT... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTCTCAGCTGGATTAATTGAT... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCCCTGTAGAAGGTTTCTCAGC................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCTGGATTAAT....... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAATTAAATAAAAACCCTGTAGAAGGT........................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGGCAGAACTAAATAAAAACCCTGTAGAAGGTTT...................... 34 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAATAAAAACCCTGTAGAAG.......................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGGCAGAACTAAATAAAAACCCTGTAGAAGGTTTCTCAGC................ 40 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTAGCTGGATTAATTGATGGT 21 3 3 0.67 2 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGATTAGCTGGATTAATTGATG.. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AGCTGGATTAATTGATGGT 19 2 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
.......................................................................................................................................................................................................................................TAGCTGGATTAATTGATGGT 20 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
.................................................................................................................................................................................................TATTTCAGAACTAAAAAAAAA..................................... 21 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................TGATTAGCTGGATTAATTGAT... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTTTCTCTGCTGTATGAATT...... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AACATTTTTTTTTTTATTTATTTTCAAAATACAAAATGAAAGAAAATTCTATTATCAGAAACCTATTACTATTTATTAAATTCTGACTATAAATTCTATTTGACCAAATATTGGAAATAATTTTGTATATCTTTGCTATATATATATATATGTATGTATATATAAATTATATTTTTTATGAATGGTAAAGAAAGTAAAGTCTTGATTTATTTTTGGGACATCTTCCAAAGAGTCGACCTAATTAACTACTT
**************************************************...(((((((.((((.((.....)).)))))))))))........((((((..((((...))))))))))......((((.....(((((((((.(((....))).)))))))))...)))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12958:2005330-2005580 + dvi_9748 TTGTAAAAAAAAAAA----------TAAATA----------AAA----GTT--TTA--------------------------TGTTTTACTTTC--TTTTA-----------------------------------------------------------AG----------AT------AATAGTCTTTGGA-------------------------------------------------------------------TAATGAT-----------A-------A--------------------------------------------------------ATAATTTAAGACT-GATAT------------------------------------------------------------------TTAAGATA-AAC-------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------------GTTTAT------AACCTTT--------------------A-------------------------------------------------------------------------------------------------------------TTAAAACATATAGAAACGATATATAT-----ATA--------T----ATACATACATATA--TAT-TT----A-----A-----TATAAA------------------A-------------AATACTT-----------------ACCATTTCTTTCATTTCAGAACTAAATAAAAACCCTGTAGAAGGTTTCTCAGCT--------GGATTAATTGATGAA
droMoj3 scaffold_6540:4284572-4284854 + TTTTAATCTACAAAATATATATATATATACA----------ATT----GT----------------------------------------------TTA-------------------------------------------------------------ATATAATATATT--------------------------------------------------------------ACGTTAGCTGTTAAAATATAGTATACTTGCTTT-----------A-------G--GAAATGTGAATAATTT-------------------------------------TATAATCTAAGATC-TATAT------------------------------------------------------------------ATAAAATA-CAT-------------------------------------------------------CG--------------------------------------------------------------------------------------------------------------------------------------TTATAT------ACGTTTA--------------------A-------------------------------------------------------------------------------------------------------------TGAGTATATAATAATATAATATATA--ATA----------------------------------T-ATAATAATATACA-----------TATATTTTAACATTACAA--------------AATTCTT-----------------ATT-TTTCCTTTATTTCAGAACTAAATAAGAACCCAGTAGAAGGTTTCTCAGCT--------GGATTAATTGATGAG
droGri2 scaffold_14822:1092233-1092479 + ATATATATATAC----------ATATATCTT----------CAA----GT--------------------------------------------------------------------------TTTACATCTTAATGCGAGACT-------TTTG----CG----------GGG-C---AG---------------------------------------------------------------------------------AAAAATAAA--------------------------AAATTTG-------------------------------------TTCAATTTTAGACG-CACAT------------------------------------------------------------------AATAAGCA-AGT---TTACCTA----------------------------------------------------------------------------------------------------------TGTATA-------------------------------------------------------------------------------------TGA--------------------A-------------------------------------------------------------------------------------------------------------TGAAAATAAATCAGAAAAACATGTAT-----ATA--------T----ATATGTATATATA--TGT-AT----A-----C-----TTT---------------------T--TACTTTATT---------------------------------TTTTTCTTTTATAATTTAAAATACAATTTTTAAAGTTTTTTTTTTCC--------ACAAAAGTTGTTGTA
droWil2 scf2_1100000004961:992921-993132 - AAGAAGAAAAAGAAA----------TGGAA------------AT----GA--TAT-TTGAAAGGTTTTG------------T------CT------------GTGCATTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTGATGATACAGAAAAAGAGTTTGGAACATG----------------------------------TAA------------------------------------------------------------------AAAAATG---------------------------A----GG-----------------------------------CTCT----------------ATAGCCTCAG--------------------------------------------------------------------------------------------------------------------------CAGATACGC---------------------------------------------------------------------------------------------------------------------------------TGCGACGAATCG-----AAA--------T----ATATATATATATA--TAT-TT----A-----------------------------------A--AATTCAAAATT-----T----------------------TACCAATG------ATATTTC------------------AAATGTCAATT--------AATAACATATATAGG
dp5 XR_group6:10781811-10781997 - GTATGTAAAAAAAAC---ATAT----AAAAA----AAAATAAAA----TA-------------------------------------------------------------------A-----------------------------ATACATTTCATATT--------------TAAACTA---------------------------------------------------------------------------------AATTATATTTATATTT-------A------------------------------------------------------------------------------------------------------------------------------------------------AATT---------------------------A----TA---------------------------------------------------TCTCATATTTACAA--------------------------------------------------------------------------------------------------------------------------TGAATATATTTCAC------------------------------------------------------------------------------------------------------------------------------------------AT----------------------------------TTA-AAATAAATATATTTGATATTTA------------------A--ATTACAC------------------------------A-ATTATTTAACTTTAATATCAAATAAA--------------TT-----------------TATTAATTAAAAAA
droPer2 scaffold_10:790086-790320 - TTAAAAAAAAAGTTT---ACAAA----AATA----A------G----------A----------------------------AT-------TGT--TTG-------------------------------------------------------------TTATATTTATTT---AAAAAAAAAGTTGTT-------------------------------------------------------------------TAATTATTCA-----------A-------A--ATAATTTAAATAATAATATTAAAAAAAATAGTTTTTTAT------------------------------------AAAAA----------------------------------------------------------------TTA-AG-----------------------------------------------------------------------------------------------------------------------------------------TGATA----------------------------------------------------AAAT------TTATTTT--------------------TCAAACATATTTTGAAAA---------------------------------------------------------------------------------------------------------------CATTTA--TAT----------------------------------C-AGAGAAAAACAAG-----------TGTTTTTTAAGAACAAGT--------------ATTTATG-----------------TTTATTTTATTTATTTTAAA-----------------------------------------------GAAAAAAAGA
droAna3 scaffold_13082:2062479-2062694 + AAAAAAAAATAT--------------AAACA----------ACA----GAG--TTT--------------------------TGTTTTTATTTT--TTACTAGATC-----ACCTAAT------ATAACATTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATTAATATGGATAACTA-----------ATA----TAAAAATGGATACAATGTTCTGTTACATAAGAT--------------CACG--------------------------------------CGACAAACTAATAATTCCTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTCCCGTTTCAGAATTAAACAAAAATCCAGTAGAAGGATTTTCAGCC--------GGTTTAATTGATGAA
droBip1 scf7180000395982:43926-44172 + AAAAACTAAAAATT----------AAAAATT----------GTA--------------------------------------TTTACTTCCTGC--TTTTA-----------------------------------------------------------AA----------AT------AAT--------------------------------------------------------------------CTTGAATATTTGTTTT-----------AATTTTAAA--CAAATTTTAAAAATTT-------------------------------------TAAATTTTCAAAACTATTTTCCAAAATTTTCTTACAATTTTTTAA--------------------------------------------------------------------------------------------------------------------------------------------CTTTTAA--------------------------------------------------------------------------------------------------------------------------CAAATATAATTCAC------------------------------------------------------------------------------------------------------------------------------------------TC----------------------------------TTA-AATTTTTTATCTTT--------------------------------------------------GGAACAAACATTTTTTT-TTCATATAAATTTAACTTAAAATATAAATTTTTTACAAAACTTTTAAAC-----------------TTAATTA
droKik1 scf7180000302469:1586331-1586525 + TTATAAAAATAT--------------ATAGA----------ATT----TT--TTT-ATTATTAAAAATAAAA-------GAT------AT------------G--------------A-----------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT------------------------------------------------------------------AATATAAA-ATT---TTATATATATATAAAATGTATAT------------CT------------------------GGGG--------------------------TTAATAAATATATATATATTTTTTTATTTATTTAATTA------------------ATTT------------------------------------------------T-------AAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-----T----------------------TTCCTTTGATTTCAAAATTAAATAAAAATGTTTTATAAAAAT-----------------------TAAATAAT
droFic1 scf7180000454038:823384-823600 - TGGAGAATTAAA----------ATACAAACT----------TTTAAAGGTA--TGC--------------------------CTCTTTTTCTTCTTTTATC-----------------------------------------------------------------------AA------ACCCATATTTGGA------------------------------------------------------------------------------------------------AAAAGGTAGGGGTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------AAATTTGAAAAAAATCGGACAATATTCTTA------------------------------------------AGTATATATATGTACATTCAAAATAGGTA-AAAAAAAATTTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCAAAATTGCAACTGGATATAACCCCTTAAAGAAGATTCCCAAT-----------------CCTTTGA
droEle1 scf7180000490404:3002-3253 - TTATAAAAAAAGTGC---TTTGA----TATA----TAAAGTGAT----G----G---------------------------------------------------------------T-----------------------------GTACTTAATAGCTT--------------TAAGTAA---------------------------------------------------------------------------------GGGT-----------A-------T--------------------------------------------------------GTAAGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGCAAGTCGAAGTTTACCTCCTTACTTGTAGGGTTGCAATTCG-------------TT------------------------------------------------T-------AAACGATCTTTCTGTGACAT---------------------------------------------------------------CTCTTAAAAAATTAT----------------------TATA--------A--AAAAG-----------TTTATTTT-TT--CTAATGTATTTAT-----------------------------------------------------------------------------------------------------A-TTTATATCGTTTCAGAACTGAACAAAAATCCAGTGGAAGGATTCTCCGCT--------GGTTTGATTGATGAA
droRho1 scf7180000764814:734-973 + GTCTAGCATAAAAAA----------TTATGA----------AAT----AT--TTT-TCATCTAGAATTG------------T------CT------------CTTTATTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCG-----------------------------------------------AAAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGCTGTTGGAAATGTTATTGCT--------------CTTCG-TTGGTTCGT-----T----------------ACAAAA------------------------------------------------------------CAAATAATCATCAAA--TATCTATATATATAAACATA-----------TCTATGTTATT--TATATATAT------------------------------------------------------------------------------------------------------------TTATATATATGCCAATTTAAAGACGAATTTATAAAATGTTTTCTCATTATATACAAAGAATTAATTTGATAA
droBia1 scf7180000301495:427158-427366 + AAAAGCTAAAT-----------ATATAAATA----------ATT----TT-A-A----------------------------CT-------TAC--TTATT-TGGTATTAATTG-------------------------------------------------------------------------------------------------------------------------------------AAAGGTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTTATTTAAAATTCCGAATTTGCCTGAAAATCTACTTTTT------AACTTTT--------------------T-----------------------------------------------------------------TA-------------------------T------TATATATATATAAATATA-----------TATATAT-----ATA--------T----ATATATATATA------T-AT----ATTTATA-----TATATA------------------T-------------TATATTTATTGGTACAAACAGTT-------------------------------------------------TCTCCA--------G----AAAAAAATAA
droTak1 scf7180000415057:314-612 - TTTTAAATTTAA----------AAAAAAATT----------AATTAAATTT--TAT--------------------------AATTTTTTATTT--TTATT-----------------------------------------------------------------------AA------ATAAATTTTTTTAAAACTTAAAAAAATATTTAAAAATGTTTAATAAATTACATAATATAAAAAAAT---------------------------------------------------------------------------------------------------------------AATAA------------------------------------------------------------------ATAAAATA-AAT-------------------------------------------------------TTAAAATTATTGT--------------------------TTATTAAATAGACGGTTAAATAAATAGTTGTAAGTTTTTAATTGATTAAAAAATGACTTTTTACTTTTTGTTCATTCAGAAATTGTCAAAAAACTTAA-----------------------------------------------------AAA---------------------------------------------------------------------------------------------------------------CTTAAC--TTT----------------------------------T-AATCATTAACAAT-----------TGT---------------------------------------------TAAAGGA-------------------------------------------------CTAGTA--------A----ACAATGAGAA
droEug1 scf7180000408157:17607-17879 - TTTTGCATAAAA----------ACAAAAACA----------ATA----AA--AAT-AAATATCAATT---------------------------------------------------------------------------------------------T--------------AAAACTA---------------------------------------------------------------------------------CAGCTTTT---TTGTG-------AAAATATTTTGATGTTTCATAAAGAAAATATAAAACTTTTTT------------------------------------GAAAG----------------------------------------------------------------CT---------------------------------------------------------------------------------------------------GGGG---------------------------------------CTTA----------------------------------------------------GAATTCTGTT-------TGACG----------------------TAATTTATGAACACTACTGAACTCTTCGAAATAAACATTTAATTTTAACAATAAATTTCTC-----------------------------------------------------------AAAGTTTA-----------------TTTAT-----------------------------------------------------------------------------------------------------A-TTTGTATCGTTTCAGAACTCAATAAGAATCCAGTGGAAGGATTCTCAGCT--------GGTTTAATTGATGAA
dm3 chrM:16155-16448 + TTATAAATAAAATTA---TTTTA----AATA----ATTA--AT---------------------------------------------------------------------AAAAATATTTTTAATATAATAAAAATTTAAAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAT------------------------------------AAAAATTCAATTCATATATTTATATATATATACATATAATTTAATTTTCAATTAAATTATATAAGTATAATAAAATAATTTATTTT-----------------AATCACTAAATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTAATTAATTGTATAT-----ATA--------T----ATATATATATATA--TAT-GT----A-----A-----AATGAA------------------AATAAATTTATT------CC------------------CCC-TATTCATAAATTTATTATATAATTAAAACTTAAAAAAATATTT-TTTTTA----------------AAAAAAA
droSim2 siII:16952-17161 + TTATAAAAAATAAAT----------TTAATAAATAATTA--ATT----TT-A-A------------------------------------------TCACTAAATC-----TGAAAATTTAATTTTTATAATTAAAATTTATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTATACTAAAGAATTATTAATATTTATAAATT-TATAA------------------------------------------------------------------TTAAAATA-AATAATTTATTTT-----------------TA---------------------------------------------------TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATAAAATCAATATATAT-----ATA--------T----ATATATATAAATA--CAT-AT----A-----A-----TATAAA------------------T----------------------------------------------------------------------------------------------------------TATATTTA
droSec2 scaffold_40:12572-12729 - TTATATATAAAT----------ATATATATA----------AAA----AT--TAT-ATAATTAAAATTATAACGACGATTAT------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TATAT------------------------------------------------------------------TATATATA-TAT-------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------TATATATATATTATATTATA-----------TATATATTATA--TATATATAT----ATATATATATATA--ATT-AT----A-----A-----AATAAT------------------A----------------------------------------------------------------------------------------------------ATTATAATTATTAT
droYak3 v2_chrUn_1870:5-193 - TATTAGAAAAAAAAA----------AAAAAA----------AAA-----CC--CAA--------------------------TACTATAG---------------------------------------------------------GTATATTAA----AT----------ATA-A---AA---------------------------------------------------------------------------------CATTATGAAAATAATA-------A------------------------------------------------------------------------------------------------------------------------------------------------ATAT---------------------------T----TA---------------------------------------------------TCATATGAATACAG--------------------------------------------------------------------------------------------------------------------------ACAATATAAATGGT-------------------------------------------ATATTAAATTAATAAT-------------------------------------------------------------------------ATA--ATA----------------------------------T-TTAAAAAAATATA-------------------------------------------------------------------------TATATTATATGAATAC-------------CGGAA-AAAATATTAAGGT--------ATAATAATTAATT--
droEre2 scaffold_4929:21244632-21244847 - TTATAAATATAT----------ATATAAATA----------AATATA------A---------------------------------------------------------------------------------------------ATATATTTA----TA----------ATA-T---TA---------------------------------------------------------------------------------CAATATAATATATATA-------TATATATATTAATAT------------------------------------------ATAAATAAATATA-TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATA--------------------------------------------------------------------------------------------------------------------------------------------------AATATAAATATATTTATAATATTACATTTTTTAAGAAATTAAAACGGTAAGCA-ACGCCATATATATCTG---------------------TATATATAT-----A----------T----ATATATATATATATATAT-GT----A-----G-----T--AG-----------------------------------------------------------------CATA---------------------------------------------------------TGTACCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTGTAAAAAAAAAAA----------TAAATA----------AAA----GTT--TTA--------------------------TGTTTTACTTTC--TTTTA-----------------------------------------------------------AG----------AT------AATAGTCTTTGGA-------------------------------------------------------------------TAATGAT-----------A-------A--------------------------------------------------------ATAATTTAAGACT-GATAT------------------------------------------------------------------TTAAGATA-AAC-------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------------GTTTAT------AACCTTT--------------------A-------------------------------------------------------------------------------------------------------------TTAAAACATATAGAAACGATATATAT-----ATA--------T----ATACATACATATA--TAT-TT----A-----A-----TATAAA------------------A-------------AATACTT-----------------ACCATTTCTTTCATTTCAGAACTAAATAAAAACCCTGTAGAAGGTTTCTCAGCT--------GGATTAATTGATGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCTCAGCT--------GGATTAATTGAT...2412.002000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCT--------G..............1912.002000000000020000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCT--------...............1811.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTTTCTCAGCT--------GGATTAATTGAT...2811.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCAGCT--------GGATTAATTGAT...2111.001000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCT--------GGATTAAT.......2611.001000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAAAACCCTGTAGAAG..................................2011.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT--------GGATTAATTGATGGT1960.332000000000000000001000000000000000000000000000000000000000001000
droMoj3
TTTTAATCTACAAAATATATATATATATACA----------ATT----GT----------------------------------------------TTA-------------------------------------------------------------ATATAATATATT--------------------------------------------------------------ACGTTAGCTGTTAAAATATAGTATACTTGCTTT-----------A-------G--GAAATGTGAATAATTT-------------------------------------TATAATCTAAGATC-TATAT------------------------------------------------------------------ATAAAATA-CAT-------------------------------------------------------CG--------------------------------------------------------------------------------------------------------------------------------------TTATAT------ACGTTTA--------------------A-------------------------------------------------------------------------------------------------------------TGAGTATATAATAATATAATATATA--ATA----------------------------------T-ATAATAATATACA-----------TATATTTTAACATTACAA--------------AATTCTT-----------------ATT-TTTCCTTTATTTCAGAACTAAATAAGAACCCAGTAGAAGGTTTCTCAGCT--------GGATTAATTGATGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAACCCAGTAGAAGGTTTC.............................2311.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAAATAAGAACCCAGT.......................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGTTTCTCAGCT--------GGAT...........2211.001100000
droGri2
ATATATATATAC----------ATATATCTT----------CAA----GT--------------------------------------------------------------------------TTTACATCTTAATGCGAGACT-------TTTG----CG----------GGG-C---AG---------------------------------------------------------------------------------AAAAATAAA--------------------------AAATTTG-------------------------------------TTCAATTTTAGACG-CACAT------------------------------------------------------------------AATAAGCA-AGT---TTACCTA----------------------------------------------------------------------------------------------------------TGTATA-------------------------------------------------------------------------------------TGA--------------------A-------------------------------------------------------------------------------------------------------------TGAAAATAAATCAGAAAAACATGTAT-----ATA--------T----ATATGTATATATA--TGT-AT----A-----C-----TTT---------------------T--TACTTTATT---------------------------------TTTTTCTTTTATAATTTAAAATACAATTTTTAAAGTTTTTTTTTTCC--------ACAAAAGTTGTTGTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAGAAGAAAAAGAAA----------TGGAA------------AT----GA--TAT-TTGAAAGGTTTTG------------T------CT------------GTGCATTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTGATGATACAGAAAAAGAGTTTGGAACATG----------------------------------TAA------------------------------------------------------------------AAAAATG---------------------------A----GG-----------------------------------CTCT----------------ATAGCCTCAG--------------------------------------------------------------------------------------------------------------------------CAGATACGC---------------------------------------------------------------------------------------------------------------------------------TGCGACGAATCG-----AAA--------T----ATATATATATATA--TAT-TT----A-----------------------------------A--AATTCAAAATT-----T----------------------TACCAATG------ATATTTC------------------AAATGTCAATT--------AATAACATATATAGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................TGGAACATG----------------------------------TAA------------------------------------------------------------------AAAAATG---------------------------A----GG-----------------------------------CTCT----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
......................................................................................................................................................................................................................................................................................................TTGATGATACAGAAAAAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.25500050
.....................................................................................................................................................................................................................................................................................................ATTGATGATACAGAAAAAGAGTTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
.................................................................................................................................................................................................................................................................................................................GAAAAAGAGTTTGGAACATG----------------------------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
............................................................................................................TGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTGATGATACAGAAAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
..........................................................................................................................................................................................................................................................................................................TGATACAGAAAAAGAGTTTGGAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......................................................................................................................................................................................................................................................................................................TGATGATACAGAAAAAGAGTTTGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
........................................................................................................GCATTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTGATGATACAGAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
dp5
GTATGTAAAAAAAAC---ATAT----AAAAA----AAAATAAAA----TA-------------------------------------------------------------------A-----------------------------ATACATTTCATATT--------------TAAACTA---------------------------------------------------------------------------------AATTATATTTATATTT-------A------------------------------------------------------------------------------------------------------------------------------------------------AATT---------------------------A----TA---------------------------------------------------TCTCATATTTACAA--------------------------------------------------------------------------------------------------------------------------TGAATATATTTCAC------------------------------------------------------------------------------------------------------------------------------------------AT----------------------------------TTA-AAATAAATATATTTGATATTTA------------------A--ATTACAC------------------------------A-ATTATTTAACTTTAATATCAAATAAA--------------TT-----------------TATTAATTAAAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTAAAAAAAAAGTTT---ACAAA----AATA----A------G----------A----------------------------AT-------TGT--TTG-------------------------------------------------------------TTATATTTATTT---AAAAAAAAAGTTGTT-------------------------------------------------------------------TAATTATTCA-----------A-------A--ATAATTTAAATAATAATATTAAAAAAAATAGTTTTTTAT------------------------------------AAAAA----------------------------------------------------------------TTA-AG-----------------------------------------------------------------------------------------------------------------------------------------TGATA----------------------------------------------------AAAT------TTATTTT--------------------TCAAACATATTTTGAAAA---------------------------------------------------------------------------------------------------------------CATTTA--TAT----------------------------------C-AGAGAAAAACAAG-----------TGTTTTTTAAGAACAAGT--------------ATTTATG-----------------TTTATTTTATTTATTTTAAA-----------------------------------------------GAAAAAAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAAAAAAAATAT--------------AAACA----------ACA----GAG--TTT--------------------------TGTTTTTATTTT--TTACTAGATC-----ACCTAAT------ATAACATTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATTAATATGGATAACTA-----------ATA----TAAAAATGGATACAATGTTCTGTTACATAAGAT--------------CACG--------------------------------------CGACAAACTAATAATTCCTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTCCCGTTTCAGAATTAAACAAAAATCCAGTAGAAGGATTTTCAGCC--------GGTTTAATTGATGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCC--------GGTTTAATTGAT...2011.001000100
droBip1
AAAAACTAAAAATT----------AAAAATT----------GTA--------------------------------------TTTACTTCCTGC--TTTTA-----------------------------------------------------------AA----------AT------AAT--------------------------------------------------------------------CTTGAATATTTGTTTT-----------AATTTTAAA--CAAATTTTAAAAATTT-------------------------------------TAAATTTTCAAAACTATTTTCCAAAATTTTCTTACAATTTTTTAA--------------------------------------------------------------------------------------------------------------------------------------------CTTTTAA--------------------------------------------------------------------------------------------------------------------------CAAATATAATTCAC------------------------------------------------------------------------------------------------------------------------------------------TC----------------------------------TTA-AATTTTTTATCTTT--------------------------------------------------GGAACAAACATTTTTTT-TTCATATAAATTTAACTTAAAATATAAATTTTTTACAAAACTTTTAAAC-----------------TTAATTASizeHit CountTotal NormTotal
No Reads
droKik1
TTATAAAAATAT--------------ATAGA----------ATT----TT--TTT-ATTATTAAAAATAAAA-------GAT------AT------------G--------------A-----------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT------------------------------------------------------------------AATATAAA-ATT---TTATATATATATAAAATGTATAT------------CT------------------------GGGG--------------------------TTAATAAATATATATATATTTTTTTATTTATTTAATTA------------------ATTT------------------------------------------------T-------AAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-----T----------------------TTCCTTTGATTTCAAAATTAAATAAAAATGTTTTATAAAAAT-----------------------TAAATAATSizeHit CountTotal NormTotal
No Reads
droFic1
TGGAGAATTAAA----------ATACAAACT----------TTTAAAGGTA--TGC--------------------------CTCTTTTTCTTCTTTTATC-----------------------------------------------------------------------AA------ACCCATATTTGGA------------------------------------------------------------------------------------------------AAAAGGTAGGGGTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------AAATTTGAAAAAAATCGGACAATATTCTTA------------------------------------------AGTATATATATGTACATTCAAAATAGGTA-AAAAAAAATTTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCAAAATTGCAACTGGATATAACCCCTTAAAGAAGATTCCCAAT-----------------CCTTTGASizeHit CountTotal NormTotal
No Reads
droEle1
TTATAAAAAAAGTGC---TTTGA----TATA----TAAAGTGAT----G----G---------------------------------------------------------------T-----------------------------GTACTTAATAGCTT--------------TAAGTAA---------------------------------------------------------------------------------GGGT-----------A-------T--------------------------------------------------------GTAAGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGCAAGTCGAAGTTTACCTCCTTACTTGTAGGGTTGCAATTCG-------------TT------------------------------------------------T-------AAACGATCTTTCTGTGACAT---------------------------------------------------------------CTCTTAAAAAATTAT----------------------TATA--------A--AAAAG-----------TTTATTTT-TT--CTAATGTATTTAT-----------------------------------------------------------------------------------------------------A-TTTATATCGTTTCAGAACTGAACAAAAATCCAGTGGAAGGATTCTCCGCT--------GGTTTGATTGATGAASizeHit CountTotal NormTotal
No Reads
droRho1
GTCTAGCATAAAAAA----------TTATGA----------AAT----AT--TTT-TCATCTAGAATTG------------T------CT------------CTTTATTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCG-----------------------------------------------AAAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGCTGTTGGAAATGTTATTGCT--------------CTTCG-TTGGTTCGT-----T----------------ACAAAA------------------------------------------------------------CAAATAATCATCAAA--TATCTATATATATAAACATA-----------TCTATGTTATT--TATATATAT------------------------------------------------------------------------------------------------------------TTATATATATGCCAATTTAAAGACGAATTTATAAAATGTTTTCTCATTATATACAAAGAATTAATTTGATAASizeHit CountTotal NormTotal
No Reads
droBia1
AAAAGCTAAAT-----------ATATAAATA----------ATT----TT-A-A----------------------------CT-------TAC--TTATT-TGGTATTAATTG-------------------------------------------------------------------------------------------------------------------------------------AAAGGTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTTATTTAAAATTCCGAATTTGCCTGAAAATCTACTTTTT------AACTTTT--------------------T-----------------------------------------------------------------TA-------------------------T------TATATATATATAAATATA-----------TATATAT-----ATA--------T----ATATATATATA------T-AT----ATTTATA-----TATATA------------------T-------------TATATTTATTGGTACAAACAGTT-------------------------------------------------TCTCCA--------G----AAAAAAATAASizeHit CountTotal NormTotal
No Reads
droTak1
TTTTAAATTTAA----------AAAAAAATT----------AATTAAATTT--TAT--------------------------AATTTTTTATTT--TTATT-----------------------------------------------------------------------AA------ATAAATTTTTTTAAAACTTAAAAAAATATTTAAAAATGTTTAATAAATTACATAATATAAAAAAAT---------------------------------------------------------------------------------------------------------------AATAA------------------------------------------------------------------ATAAAATA-AAT-------------------------------------------------------TTAAAATTATTGT--------------------------TTATTAAATAGACGGTTAAATAAATAGTTGTAAGTTTTTAATTGATTAAAAAATGACTTTTTACTTTTTGTTCATTCAGAAATTGTCAAAAAACTTAA-----------------------------------------------------AAA---------------------------------------------------------------------------------------------------------------CTTAAC--TTT----------------------------------T-AATCATTAACAAT-----------TGT---------------------------------------------TAAAGGA-------------------------------------------------CTAGTA--------A----ACAATGAGAASizeHit CountTotal NormTotal
No Reads
droEug1
TTTTGCATAAAA----------ACAAAAACA----------ATA----AA--AAT-AAATATCAATT---------------------------------------------------------------------------------------------T--------------AAAACTA---------------------------------------------------------------------------------CAGCTTTT---TTGTG-------AAAATATTTTGATGTTTCATAAAGAAAATATAAAACTTTTTT------------------------------------GAAAG----------------------------------------------------------------CT---------------------------------------------------------------------------------------------------GGGG---------------------------------------CTTA----------------------------------------------------GAATTCTGTT-------TGACG----------------------TAATTTATGAACACTACTGAACTCTTCGAAATAAACATTTAATTTTAACAATAAATTTCTC-----------------------------------------------------------AAAGTTTA-----------------TTTAT-----------------------------------------------------------------------------------------------------A-TTTGTATCGTTTCAGAACTCAATAAGAATCCAGTGGAAGGATTCTCAGCT--------GGTTTAATTGATGAASizeHit CountTotal NormTotal
No Reads
dm3
TTATAAATAAAATTA---TTTTA----AATA----ATTA--AT---------------------------------------------------------------------AAAAATATTTTTAATATAATAAAAATTTAAAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAT------------------------------------AAAAATTCAATTCATATATTTATATATATATACATATAATTTAATTTTCAATTAAATTATATAAGTATAATAAAATAATTTATTTT-----------------AATCACTAAATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTAATTAATTGTATAT-----ATA--------T----ATATATATATATA--TAT-GT----A-----A-----AATGAA------------------AATAAATTTATT------CC------------------CCC-TATTCATAAATTTATTATATAATTAAAACTTAAAAAAATATTT-TTTTTA----------------AAAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................ATTCATATATTTATATATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--TAT-GT----A-----A-----AATGAA------------------AATA...............................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AATAAAAATTTAAAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATTAATTGTATAT-----A...............................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATAAAATTA---TTTTA----AATA----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTATT------CC------------------CCC-TATTC....................................................................2190.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTAATTAATT...........................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAAATTATATAAGTATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-TATTCATAAATTTATTATA......................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----A-----AATGAA------------------AATAAATTTATT------CC------------------CCC-T........................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT------CC------------------CCC-TATTCATAAATTTATT.........................................................2590.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATT------CC------------------CCC-TATTCATA.................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATAT-----ATA--------T----ATATATATA.......................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATTTATT------CC------------------CCC-TA.......................................................................19100.1010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATTGTATAT-----ATA--------T----T...............................................................................................................................................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAATTTATTATATAAA..................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATAT-----ATA--------T----ATATATA.........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATAT-----ATA--------T----ATATATATATATA--TAT-.............................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATAT-----ATA--------T----ATATATATA.......................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATACATATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATAT-----ATA--------T----ATATATATATATA--.................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATAT-----ATA--------T----ATATATATA.......................................................................................................................................................................21200.0510000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTATAAAAAATAAAT----------TTAATAAATAATTA--ATT----TT-A-A------------------------------------------TCACTAAATC-----TGAAAATTTAATTTTTATAATTAAAATTTATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTATACTAAAGAATTATTAATATTTATAAATT-TATAA------------------------------------------------------------------TTAAAATA-AATAATTTATTTT-----------------TA---------------------------------------------------TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATAAAATCAATATATAT-----ATA--------T----ATATATATAAATA--CAT-AT----A-----A-----TATAAA------------------T----------------------------------------------------------------------------------------------------------TATATTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......AAATAAAT----------TTAATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16190.05100000010000000000
droSec2
TTATATATAAAT----------ATATATATA----------AAA----AT--TAT-ATAATTAAAATTATAACGACGATTAT------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TATAT------------------------------------------------------------------TATATATA-TAT-------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------TATATATATATTATATTATA-----------TATATATTATA--TATATATAT----ATATATATATATA--ATT-AT----A-----A-----AATAAT------------------A----------------------------------------------------------------------------------------------------ATTATAATTATTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TATTAGAAAAAAAAA----------AAAAAA----------AAA-----CC--CAA--------------------------TACTATAG---------------------------------------------------------GTATATTAA----AT----------ATA-A---AA---------------------------------------------------------------------------------CATTATGAAAATAATA-------A------------------------------------------------------------------------------------------------------------------------------------------------ATAT---------------------------T----TA---------------------------------------------------TCATATGAATACAG--------------------------------------------------------------------------------------------------------------------------ACAATATAAATGGT-------------------------------------------ATATTAAATTAATAAT-------------------------------------------------------------------------ATA--ATA----------------------------------T-TTAAAAAAATATA-------------------------------------------------------------------------TATATTATATGAATAC-------------CGGAA-AAAATATTAAGGT--------ATAATAATTAATT--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................AAA-----CC--CAA--------------------------TACTATAG---------------------------------------------------------GTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20101000000000
.........................................AAA-----CC--CAA--------------------------TACTATAG---------------------------------------------------------GTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---------------------------T----TA---------------------------------------------------TCATATGAATACAG--------------------------------------------------------------------------------------------------------------------------ACAATAT....................................................................................................................................................................................................................................................................................................................................................28200.05101000000000
................................................................................................................................................................................................................................................................................AATAATA-------A------------------------------------------------------------------------------------------------------------------------------------------------ATAT---------------------------T----TA---------------------------------------------------TCATATGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---------------------------T----TA---------------------------------------------------TCATATGAATACAG--------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
................................................................................................................................................................................................................................................................................AATAATA-------A------------------------------------------------------------------------------------------------------------------------------------------------ATAT---------------------------T----TA---------------------------------------------------TCATATGAATACAG--------------------------------------------------------------------------------------------------------------------------AC.........................................................................................................................................................................................................................................................................................................................................................31200.05100000000001
droEre2
TTATAAATATAT----------ATATAAATA----------AATATA------A---------------------------------------------------------------------------------------------ATATATTTA----TA----------ATA-T---TA---------------------------------------------------------------------------------CAATATAATATATATA-------TATATATATTAATAT------------------------------------------ATAAATAAATATA-TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATA--------------------------------------------------------------------------------------------------------------------------------------------------AATATAAATATATTTATAATATTACATTTTTTAAGAAATTAAAACGGTAAGCA-ACGCCATATATATCTG---------------------TATATATAT-----A----------T----ATATATATATATATATAT-GT----A-----G-----T--AG-----------------------------------------------------------------CATA---------------------------------------------------------TGTACCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 11:06 PM