dvi_9706

exon [dvir_GLEANR_11139:1]; CDS [Dvir\GJ11171-cds]; intron [Dvir\GJ11171-in]; Antisense to intron [Dvir\GJ11152-in]

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Name	Class	Family	Strand
Gypsy1-I_Dmoj-int	LTR	Gypsy	+

-----------------------------#####################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TATGCTTTCGGTGCGTACCTCAACTAATAATGGCTTCAATGTTCGATCAGGTAATTTTCGGCATGGACTTTCTCCGTGCGATAGGCACGAAGATACGGTGCGGAGACAGTGAGATGATGCTAGAAACCCCGGATAGACTGGAGATTAGGAATGGGGCGACTGGTTGCCCTGCGGAGGCGATCACAGAAGTGACGTAAGGGATTTGACGGGGCGGCAGTCCGTCTCGCAGGGAGAATCGTCGGAGGCGCGTT ************************************************.....(((((((((..(((.(((((((((..((..........))..))))))))).)))......))))).))))((((((.....)))............(((((((....)))))))......(((.((((....)))))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060674 9x140_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060678 9x140_testes_total	V053 head	V116 male body	M061 embryo	SRR060665 9_females_carcasses_total	SRR060666 160_males_carcasses_total	SRR060677 Argx9_ovaries_total	V047 embryo
..........................................TTGATCAGGTAATTTGGGGCAT...........................................................................................................................................................................................	22	3	2	2.00	4	3	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TCGCAGGGAGAATCGTCGGAG.......	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................TGATCAGGTAATTTGGGGCAT...........................................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................GAATAGGGCGACGAGTTGCC...................................................................................	20	3	7	0.29	2	0	0	0	0	0	2	0	0	0	0
.........................................................................................................AAAGGGAGATGATGCTAGAAT.............................................................................................................................	21	3	4	0.25	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................ACGCAAAGGATTTGACGTGG........................................	20	3	5	0.20	1	0	0	0	1	0	0	0	0	0	0
..................................TTCAATGATTGATCAGGAAAT....................................................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................AAGGGAGATGATGCTAGA...............................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................TGATGTCAGGGATTGGACG...........................................	19	3	11	0.09	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................CGGCAGTGCGGCTAGCAGGG....................	20	3	11	0.09	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................AGAATGGAGATAAGGGATGG.................................................................................................	20	3	12	0.08	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................CTCAAGGGAATTGACGGGG........................................	19	3	13	0.08	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................TCAAGGGAATTGACGGGG........................................	18	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0

ATACGAAAGCCACGCATGGAGTTGATTATTACCGAAGTTACAAGCTAGTCCATTAAAAGCCGTACCTGAAAGAGGCACGCTATCCGTGCTTCTATGCCACGCCTCTGTCACTCTACTACGATCTTTGGGGCCTATCTGACCTCTAATCCTTACCCCGCTGACCAACGGGACGCCTCCGCTAGTGTCTTCACTGCATTCCCTAAACTGCCCCGCCGTCAGGCAGAGCGTCCCTCTTAGCAGCCTCCGCGCAA ************************************************.....(((((((((..(((.(((((((((..((..........))..))))))))).)))......))))).))))((((((.....)))............(((((((....)))))))......(((.((((....)))))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060665 9_females_carcasses_total	SRR060673 9_ovaries_total	M047 female body	GSM1528803 follicle cells	SRR060682 9x140_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total
.................GGAGTTGATTAGTACCTAAG......................................................................................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0
....................................GTTACTAACTAGTCCTTTAAA..................................................................................................................................................................................................	21	3	4	0.75	3	3	0	0	0	0	0	0
...................................AGTTACTAACTAGTCCTTTAA...................................................................................................................................................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCTTCCCTGCTAGCAGCCT........	20	3	4	0.25	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................AGCTTCCCTGCTAGCAGCC.........	19	3	10	0.10	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................AGCTTCCGTCCTAGCAGCC.........	19	3	12	0.08	1	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................GTCCATCCTAGCAGCCTG.......	18	3	12	0.08	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................AGCTTCCCTTCTAGCAGCC.........	19	3	14	0.07	1	0	0	1	0	0	0	0
................................................................................................................CTACCAGGATCTTTGG...........................................................................................................................	16	2	17	0.06	1	0	0	0	1	0	0	0
.............................................................................................................ACGCTACCAGGATCTTTG............................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0
.........................................................................................................................CCTTTGGGGCCTAGTTGA................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0	0
.........................TTGTCTCCGAAGTTACAAG...............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:1204956-1205206 +	dvi_9706	TAT-GCTTTCGGTGCGTA--------------------CCTCAACTAATAATGGCTTCAATGTTCGATCAGGTAATTTTCGGCATGGACTTTCTCCGTGCGATAGGCACGAAGATACGGTGCGGAGACAGTGAGATGATGCTA----------------------------------------------------------------------------------------GAAACCCCGGATAGACTGGAGATTAGGAATGGGGCGACTGGTTGCCCTGCGGAGGCGATCACAGAAGTGACGTAAGGGATTTGACGGGGCGGCAGTCCGTCTCGCAGGGAGAATCGTCGGAGGCGCGTT
droMoj3	scaffold_6118:34729-34985 +		TGTGACTCT-------GGCTGGGAAGACGGCGGAAGCGAATCTGCTAATAATGCCGACCATGTTGGACTATGTCATCCTCGGCATGGACTTTCTATGCGCCATCGGCACTACGGTGCGTTGCGGCAACACAGAGCTGGAGATGAGGATGGTGGACGACGTGGCAGAAGGAGCGTCGCTGTCGAGTCGACAAAGAGTGGAGAAAGGCATCAGTGGTTTTAGAGGGCAAGACCAGC------------------------------------------------------------------------------------------------TCGCCAAAGGAGATGCGAAGGAGTCGGGCC
droGri2	scaffold_15110:22548701-22548712 +		GGAGTT---------------------------------------------------------------------------------------------------------------------GCAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004931:46320-46400 +		TA---------------------------------------------GCGATGCCATCGATGATGGATCCTCTTATTTTGGGAGTGGATTTCCTTCGGAACATAGGATCTTCTATACGTTGCGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_singleton_3671:13289-13358 +		-----------------------------------------------------------ATGTTAGAGCAAGCCATCATAGGGATGGACTTCCTGTGCGCCATCGAAACCGCAATACAATGTGGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_1811:1747-1840 +		GT---------------G--------------------CCGCACTTGGTGCTGCCCAACATGCTAGAGCAAGCCATCATAGGGATGGACTTCCTGTGCGCCATCGAAACCACAATACAATGTGGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13230:2970330-2970384 +		CC---------------G--------------------GAGTGACCGGAGA---------------------------------------TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCGGTCGGCTGAGGCGAGCA--------------------------------------------------------------------
droBip1	scf7180000393763:27847-27890 +		AGGAGT----------------------------------------------GC---------------------------GTAAGGAATTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCGGTGGTAGTCTGACCGGCGG----------------------
droKik1	scf7180000301873:4841-4929 +		GT---------------G--------------------CCCCTCTTCGTCATGCCGGCTATGTTGGAACCCCTGATCCTGGGCATGGATTTCCTGGCCACGATCGGCACCACCATCCAGTGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000449829:295-402 +		GT---------------G--------------------CCACTACTTTTCATGCCATCCATGCTACAACCCTTAATTTTAGGATTAGACTTCCTCAGTAGTATAGGAACGACGCTGCGCTGCGGAACAGCAGAGCTGCGGCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000486598:6486-6582 -		CGGTGCTCT-------TA--------------------CCTATGTTAGTAATGCCCACCATGTTCGATCGTGTAATACTTGGAATGGACTTCCTCAAAGTAGCGGGAACTCAGGTGCGATGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000770750:651-784 -		TAG------------------------------------CGCTACTGGTAACAGACTCTATGCTAGATAAAGTAATATTAGGACTTAACTTTCTCTGCGCAATCGGCACTACAATACGATGTACGAGAAACACACGGGAAA---------------------------------------------------------------------------TTAACAGGAAAACCAGGAAACACAGAAGA-------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301896:22577-22658 -		CT--------------------------------------------GGTTATGCCTACCATGTTGGATCGCGTCATATTAGGCATGGACTTCTTGGCCGCAATTGGGACTCGGTAACAGTGCGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414490:1734-1830 +		CGGTGCTCT-------TA--------------------CCCATGTTGGTGATGCCTACCATGTTGGATCGGGTGATACTTGGGATGGACTTCCTCAGAGCGGCAGGAACGCACGTACGATGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:32954-32990 -		GT---------------G--------------------GA-------------------------------------------------------------------------------------GACAATGAAATGCAGCTA----------------------------------------------------------------------------------------AAAACCTTGGGCAG-------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TAT-GCTTTCGGTGCGTA--------------------CCTCAACTAATAATGGCTTCAATGTTCGATCAGGTAATTTTCGGCATGGACTTTCTCCGTGCGATAGGCACGAAGATACGGTGCGGAGACAGTGAGATGATGCTA----------------------------------------------------------------------------------------GAAACCCCGGATAGACTGGAGATTAGGAATGGGGCGACTGGTTGCCCTGCGGAGGCGATCACAGAAGTGACGTAAGGGATTTGACGGGGCGGCAGTCCGTCTCGCAGGGAGAATCGTCGGAGGCGCGTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................TCGCAGGGAGAATCGTCGGAG.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGTGACTCT-------GGCTGGGAAGACGGCGGAAGCGAATCTGCTAATAATGCCGACCATGTTGGACTATGTCATCCTCGGCATGGACTTTCTATGCGCCATCGGCACTACGGTGCGTTGCGGCAACACAGAGCTGGAGATGAGGATGGTGGACGACGTGGCAGAAGGAGCGTCGCTGTCGAGTCGACAAAGAGTGGAGAAAGGCATCAGTGGTTTTAGAGGGCAAGACCAGC------------------------------------------------------------------------------------------------TCGCCAAAGGAGATGCGAAGGAGTCGGGCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................CTGGAGATGAGGATGGTGGACG............................................................................................................................................................................................................	22	17	0.53	9	8	0	0	0	0	1
......................................................................................................................................CTGGAGATGAGGATGGTGGAC.............................................................................................................................................................................................................	21	17	0.35	6	5	0	0	0	1	0
......................................................................................................................................CTGGAGATGAGGATGGTGGACGA...........................................................................................................................................................................................................	23	17	0.35	6	6	0	0	0	0	0
......................................................................................................................................CTGGAGATGAGGATGGTGGA..............................................................................................................................................................................................................	20	17	0.35	6	4	1	0	0	1	0
..............................................................................TCGGCATGGACTTTCTATGCGCCATC................................................................................................................................................................................................................................................................	26	11	0.18	2	1	0	0	0	1	0
.......................................................................................................................................TGGAGATGAGGATGGTGGACGA...........................................................................................................................................................................................................	22	17	0.18	3	3	0	0	0	0	0
......................................................................................................................................CTGGAGATGAGGATGGTGG...............................................................................................................................................................................................................	19	18	0.17	3	3	0	0	0	0	0
..............................................................................TCGGCATGGACTTTCTATGCGCCATCGGC.............................................................................................................................................................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................CTGGAGATGAGGATGGTGGACGAC..........................................................................................................................................................................................................	24	16	0.13	2	1	0	0	0	1	0
....................................................................................TGGACTTTCTATGCGCCATCGGCACTAC........................................................................................................................................................................................................................................................	28	9	0.11	1	1	0	0	0	0	0
.......................................................................................................................................TGGAGATGAGGATGGTGG...............................................................................................................................................................................................................	18	18	0.11	2	2	0	0	0	0	0
..............................................................................TCGGCATGGACTTTCTATGCGCCATCGG..............................................................................................................................................................................................................................................................	28	11	0.09	1	1	0	0	0	0	0
..............................................................................TCGGCATGGACTTTCTATGCGCCATCG...............................................................................................................................................................................................................................................................	27	11	0.09	1	1	0	0	0	0	0
..............................................................................TCGGCATGGACTTTCTATGCGCC...................................................................................................................................................................................................................................................................	23	12	0.08	1	1	0	0	0	0	0
........................................................................TCATCCTCGGCATGGACTTTCTATG.......................................................................................................................................................................................................................................................................	25	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................................................................................................TTAGAGGGCAAGACCAGC------------------------------------------------------------------------------------------------TCGC..........................	22	13	0.08	1	1	0	0	0	0	0
......................................................................................................................................CTGGAGATGAGGATGGTGGACGAA..........................................................................................................................................................................................................	24	17	0.06	1	0	0	0	0	0	1
......................................................................................................................................CTGGAGATGAGGATGGTGGAAT............................................................................................................................................................................................................	22	17	0.06	1	0	0	0	0	1	0
.......................................................................................................................................TGGAGATGAGGATGGTGGAC.............................................................................................................................................................................................................	20	17	0.06	1	1	0	0	0	0	0
.......................................................................................................................................TGGAGATGAGGATGGTGGACG............................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
......................................................................................................................................CTGGAGATGAGGATGGTG................................................................................................................................................................................................................	18	18	0.06	1	1	0	0	0	0	0
.............................................................................................TATGCGCCATCGGCACTACGGTGCGTTG...............................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................GAGATGAGGATGGTGGACGACGTGG......................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................TGAGGATGGTGGACGACGTGG......................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droGri2

GGAGTT---------------------------------------------------------------------------------------------------------------------GCAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TA---------------------------------------------GCGATGCCATCGATGATGGATCCTCTTATTTTGGGAGTGGATTTCCTTCGGAACATAGGATCTTCTATACGTTGCGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................GATGGATCCTCTTATTTTGGGAGTGG.................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0
..................................................ATGCCATCGATGATGGATCCTCTTA.............................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0

dp5

-----------------------------------------------------------ATGTTAGAGCAAGCCATCATAGGGATGGACTTCCTGTGCGCCATCGAAACCGCAATACAATGTGGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................GGGATGGACTTCCTGTGC......................................................................................................................................................................................................................................................................	18	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................GCCATCGAAACCGCAATACAATGTGG............................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TCCTGTGCGCCATCGAAACCGCAA......................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................TGTTAGAGCAAGCCATCATAGGGA....................................................................................................................................................................................................................................................................................	24	5	0.40	2	0	1	0	0	0	0	1	0	0	0
............................................................TGTTAGAGCAAGCCATCATAGGGATA..................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.................................................................................GGATGGACTTCCTGTGCGCC...................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............................................................TAGAGCAAGCCATCATAGGGATGGACT..............................................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................TAGAGCAAGCCATCATAGGGATG..................................................................................................................................................................................................................................................................................	23	15	0.13	2	0	2	0	0	0	0	0	0	0	0
...............................................................TAGAGCAAGCCATCATAGGGATT..................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................TAGAGCAAGCCATCATAGGGATGG.................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	0	0	0	0	0	1	0	0	0
...............................................................TAGAGCAAGCCATCATAGGG.....................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	0	0	0	0	1	0	0	0

droPer2

GT---------------G--------------------CCGCACTTGGTGCTGCCCAACATGCTAGAGCAAGCCATCATAGGGATGGACTTCCTGTGCGCCATCGAAACCACAATACAATGTGGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................AGGGATGGACTTCCTGTGCG.....................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................CTGCCCAACATGCTAGAGCA..................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.......................................................CAACATGCTAGAGCAAGCCATCATAG.......................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
...........................................................................TCATAGGGATGGACTTCCTGT........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

CC---------------G--------------------GAGTGACCGGAGA---------------------------------------TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCGGTCGGCTGAGGCGAGCA--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................A---------------------------------------TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCG.....................................................................................	23	20	2.05	41	41	0	0	0	0	0
..................................................A---------------------------------------TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGG........................................................................................	20	20	0.60	12	10	2	0	0	0	0
..........................................................................................TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCG.....................................................................................	22	20	0.45	9	9	0	0	0	0	0
..................................................A---------------------------------------TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCGGT...................................................................................	25	20	0.35	7	7	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACGAGCGGTCGGTCGGCTGAG...........................................................................	21	20	0.15	3	3	0	0	0	0	0
..........................................................................................TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCGGTCGG................................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................CG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCGGTCGGTCGG................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................GAGGACGAGCGGTCGGTCGG................................................................................	20	20	0.05	1	0	1	0	0	0	0
..........................................................................................TCG-------------------AC------------------------------------------------------------------------------------------------------------------------------------------------GGGAGGACGAGCG.........................................................................................	18	20	0.05	1	1	0	0	0	0	0

droBip1

AGGAGT----------------------------------------------GC---------------------------GTAAGGAATTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCGGTGGTAGTCTGACCGGCGG----------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GT---------------G--------------------CCCCTCTTCGTCATGCCGGCTATGTTGGAACCCCTGATCCTGGGCATGGATTTCCTGGCCACGATCGGCACCACCATCCAGTGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GT---------------G--------------------CCACTACTTTTCATGCCATCCATGCTACAACCCTTAATTTTAGGATTAGACTTCCTCAGTAGTATAGGAACGACGCTGCGCTGCGGAACAGCAGAGCTGCGGCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGGTGCTCT-------TA--------------------CCTATGTTAGTAATGCCCACCATGTTCGATCGTGTAATACTTGGAATGGACTTCCTCAAAGTAGCGGGAACTCAGGTGCGATGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAG------------------------------------CGCTACTGGTAACAGACTCTATGCTAGATAAAGTAATATTAGGACTTAACTTTCTCTGCGCAATCGGCACTACAATACGATGTACGAGAAACACACGGGAAA---------------------------------------------------------------------------TTAACAGGAAAACCAGGAAACACAGAAGA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CT--------------------------------------------GGTTATGCCTACCATGTTGGATCGCGTCATATTAGGCATGGACTTCTTGGCCGCAATTGGGACTCGGTAACAGTGCGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGTGCTCT-------TA--------------------CCCATGTTGGTGATGCCTACCATGTTGGATCGGGTGATACTTGGGATGGACTTCCTCAGAGCGGCAGGAACGCACGTACGATGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSim2

GT---------------G--------------------GA-------------------------------------------------------------------------------------GACAATGAAATGCAGCTA----------------------------------------------------------------------------------------AAAACCTTGGGCAG-------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

dvi_9706

scaffold_12958:1205006-1205156 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads