dvi_9701

AAACAACTCCCTTTGACTTTCATGAAGAATGTCTGTCTAACCTTTCATGAGGTCAACCGCACCAGTTAAAACTTGGATTAATTTCCACCCTTAAAAACTACAAATTATACACAATTTCTCAATTATCATTATCCCTTTACCCTTTAAGAAGACTAAGAAGATTTTCTAACCTATTTACGTTCGTACAAAAGTCAGCATGTCTGTGTCAGTTCATAGGTGACCTCGTGGGGATATGCTAGGGAATATTTTAG ************************************************..(((((((...)))))))((((((...(((((((((....)))))))))))))))....((((((....))))))....(((((.(((.((((....)))).))).)))))...(((((((...(((....)))...)))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060656 9x160_ovaries_total	SRR060665 9_females_carcasses_total	SRR060681 Argx9_testes_total	SRR060685 9xArg_0-2h_embryos_total
..............................................................................................................................................................................TCACGGTCGTACAAAAGT...........................................................	18	2	9	0.67	6	6	0	0	0
.......................................ACCTATCATGAAGTCAACCGT...............................................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0
.....................................................................................................................................................................CTAGACTATTTACGTGCGTA..................................................................	20	3	13	0.08	1	0	0	1	0
.............................................................................................................................................................AAAATTTTGTAACCTATTT...........................................................................	19	2	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:1078620-1078870 +	dvi_9701	TTTGTTGAGGGAAACTGAAAGTACTTCTTACAGA-CAGATTGGAAAGTACTCCAGTTGGCGTGGTCAATTTTGAACCTAATTAAAGGTGGGAATTTTTGATGTTTAATA-TGTGTTAAAGAGTTAATAGTAATA---GGGAAATGGGAAATTCTTCTGATTCTTC-TAAAAGATTGGATAAATGCAAGCATGTTTTCAGTCGTACAGACACAGTCAAGTATCCACTGGAGCACCCCTATACGATCCCTTATAAAATC
droWil2	scf2_1100000004909:394947-395086 +		TTGGTCGAAGGGAACTGGAAGTGTTTTTTACAAA-CCGATTGGAAGATATTCCAGTTGGCGTAGTCAGTTTTGAACCTAATTATAGGTGGGACCTTTTCAGGTTTTAAA-TGAGTCAGAAGGTTAATAGTAATA---GGAA----------------------------------------------------------------------------------------------------------------AATG
droAna3	scaffold_13266:19652080-19652168 +		TGTGTTGCAGGGAAATTAAAGTTATCCCTGCATT-TGGCACGATACAGATCCCAATTGGCTTTATCTATTTTAAATTTAGGGGATGGCGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396788:51961-52067 +		TGTGTTGCAGGGAAATTAAAGTTATCTCTGCATT-TGGCACGATACAGATCCCAATTGGCTTTATCTTATTTGAATTTAGGGGATGGCGGTATGTTTAGGGGATTA-----------------------------------------------------------------------------------------------------------------------------------------------------GT
droKik1	scf7180000302407:33540-33641 -		TTGGTAGCAATAAAGTTAAGGGTAACTTAGCATT-TGTCGCGGTACAGGTTCCAGTTGGCTTTATCTACTTTAACTTTAGGAGGTGGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------GATTTTGGAAATT
droFic1	scf7180000453285:14477-14582 +		GAAACTGT----------------TCT-TG--------------------------------------------------------------------------------------------------------------------------------------TTGAAAGGGATCAATAATTGTACTCATGTATTCCTTCGCACTGACGCCGTCAAGCAGCCTTTGGAAAACCCTTACACTGGTCCGTATGAAATC
droEle1	scf7180000486841:18967-19073 +		GAAAATTT----------------TTTAGG--------------------------------------------------------------------------------------------------------------------------------------CTGAAAGGAATCGATCAGTGCTCCTATGTTTTTATCCGTACAGATGCGGTTAAACAACGTTTGGAACCACCTTATACTGGACCTTATGAAGTC
droRho1	scf7180000776974:4923-5023 +		TGATCCGT------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAGGAAAAGACAAATGCTCGCACGAATTCATTCGCACCGATGCCCCCAAACAGCCTTTGGAGCCACCATACACTGGACCATTTGAAGTT
droBia1	scf7180000302304:157361-157457 +		TTGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGGAATAGACAAGTGGTCCCACGTATTCATTCGCACCGATGCCGTCAAACATCCTTTGGAGCCACCATACACGGGCCCATTTAAAGTT
droTak1	scf7180000413752:795-895 -		TGTTCCGC------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAGAAATAGACAAATGCTCTCATGTATTTATTCGGACCGATGCCGTCAAACTACCATTGGAACCGCCTTATTCAGGACCTTTTGAAGTC
droEug1	scf7180000409809:27785-27885 -		TTCGTTGAAGGAAAATTAAAGCTGATGTTGCATT-CGGCGCGGTACAGATTCCAATTTGTCTTATCTATTTTAAATTTCGGAGTGGTAGAGAATCTTTTACG-----------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	node_46883:442-498 -		CGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGACGCTGTAAAGCAACCTCTGGAGCCTCCTTACACCGGACCGTACGAAGTC
droYak3	2L:20999976-21000094 -		TTGGTTGTAGGAAAATTGAAGGTATCTTTACAAA-GGGTACGGT----ATCCCAATCAGCTTTATCCATCTTAAATTTTAGTGGTAGT------GTTTTACTATTTATTCTGTG-----------------ATTATGGGAT--------------------------------------------------------------------------------------------------------------AGTGAT
droEre2	scaffold_4929:23144060-23144191 +		TTGGTTGTAGGAAAATTGAAGCTATCTTTACAAAAGGGTGCGGTACAGTTCCCAATCGGCTTTATCCATCTTAAATTTTTGTGGTGGGGGTAGGGTTTTACAATTTATT-CG----------CGAATAGTAATTATGGGAT------------------------------------------------------------------------------------------------------------------AG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTTGTTGAGGGAAACTGAAAGTACTTCTTACAGA-CAGATTGGAAAGTACTCCAGTTGGCGTGGTCAATTTTGAACCTAATTAAAGGTGGGAATTTTTGATGTTTAATA-TGTGTTAAAGAGTTAATAGTAATA---GGGAAATGGGAAATTCTTCTGATTCTTC-TAAAAGATTGGATAAATGCAAGCATGTTTTCAGTCGTACAGACACAGTCAAGTATCCACTGGAGCACCCCTATACGATCCCTTATAAAATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................TAATA-TGTGTTAAAGAGTTAATAGTAA.............................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTACAGA-CAGATTGGAAAGTACTCC............................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTACAGA-CAGATTGGAAAGTACT..............................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................ATA---GGGAAATGGGAAATTC........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTACAGA-CAGATTGGAAAGTACTCCAGT.........................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTCAGTCGTACAGACACAGT...........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droWil2

TTGGTCGAAGGGAACTGGAAGTGTTTTTTACAAA-CCGATTGGAAGATATTCCAGTTGGCGTAGTCAGTTTTGAACCTAATTATAGGTGGGACCTTTTCAGGTTTTAAA-TGAGTCAGAAGGTTAATAGTAATA---GGAA----------------------------------------------------------------------------------------------------------------AATG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................TCCAGTTGGCGTAGTCAGTTTTGAACC....................................................................................................................................................................................	27	6	0.50	3	0	3	0	0	0
............................TACAAA-CCGATTGGAAGATATTCCAGT.........................................................................................................................................................................................................	27	6	0.50	3	0	1	1	1	0
.....................TGTTTTTTACAAA-CCGATTGGAAGA..................................................................................................................................................................................................................	25	6	0.50	3	0	3	0	0	0
.......................................................................TGAACCTAATTATAGGTGGGACCTTT................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0
.............................................................................TAATTATAGGTGGGACCTTTTCAGGTT.........................................................................................................................................................	27	3	0.33	1	0	0	0	1	0
..................................................TCCAGTTGGCGTAGTCAGTTTTGAAC.....................................................................................................................................................................................	26	6	0.33	2	0	2	0	0	0
...........................................................CGTAGTCAGTTTTGAACCTAATTATAGG..........................................................................................................................................................................	28	7	0.29	2	0	2	0	0	0
TTGGTCGAAGGGAACTGGAAGTGTT........................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
.............................................................TAGTCAGTTTTGAACCTAATTATAGG..........................................................................................................................................................................	26	8	0.25	2	0	2	0	0	0
........................................................................................................TTAAA-TGAGTCAGAAGGTTAATAGTA..............................................................................................................................	26	5	0.20	1	0	1	0	0	0
.................................................................................................TCAGGTTTTAAA-TGAGTCAGAAGGT......................................................................................................................................	25	6	0.17	1	0	1	0	0	0
...............................................................................................TTTCAGGTTTTAAA-TGAGTCAGAAGG.......................................................................................................................................	26	6	0.17	1	0	1	0	0	0
...............TGGAAGTGTTTTTTACAAA-..............................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0
...............................................................................................TTTCAGGTTTTAAA-TGAGTCAGAAGGT......................................................................................................................................	27	6	0.17	1	0	1	0	0	0
.................................................................CAGTTTTGAACCTAATTATAGGTGG.......................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
..........................TTTACAAA-CCGATTGGAAGATATTCCAGT.........................................................................................................................................................................................................	29	6	0.17	1	0	1	0	0	0
........................................................................................................TTAAA-TGAGTCAGAAGGTTAATA.................................................................................................................................	23	6	0.17	1	0	0	1	0	0
..............................................................................................TTTTCAGGTTTTAAA-TGAGTCAGAAGG.......................................................................................................................................	27	6	0.17	1	0	1	0	0	0
...........................TTACAAA-CCGATTGGAAGATATTCCAGT.........................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0
..................................................TCCAGTTGGCGTAGTCAGTTTTGAACCT...................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0
................................................................................................TTCAGGTTTTAAA-TGAGTCAGAAGGT......................................................................................................................................	26	6	0.17	1	0	1	0	0	0
............................TACAAA-CCGATTGGAAGATATTC.............................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
.........................................GGAAGATATTCCAGTTGGCGTAGTCA..............................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
................................................................TCAGTTTTGAACCTAATTATAGGTGG.......................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
........................................TGGAAGATATTCCAGTTGGCGTAG.................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
........................................................TGGCGTAGTCAGTTTTGAACCTAAT................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
...........................................................CGTAGTCAGTTTTGAACCTAATTATA............................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0
.............................................................TAGTCAGTTTTGAACCTAATTATAGGT.........................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0
..........................TTTACAAA-CCGATTGGAAGATAT...............................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0
.......................................................TTGGCGTAGTCAGTTTTGAACCTAAT................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0
.............................................................TAGTCAGTTTTGAACCTAATTATAG...........................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0

droAna3

TGTGTTGCAGGGAAATTAAAGTTATCCCTGCATT-TGGCACGATACAGATCCCAATTGGCTTTATCTATTTTAAATTTAGGGGATGGCGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................TAAAGTTATCCCTGCATT-TGGCACGA......................................................................................................................................................................................................................	26	4	1.00	4	4	0	0	0	0	0
......................TATCCCTGCATT-TGGCACGATACAGA................................................................................................................................................................................................................	26	4	0.75	3	1	2	0	0	0	0
................TAAAGTTATCCCTGCATT-TGGCACG.......................................................................................................................................................................................................................	25	4	0.75	3	2	1	0	0	0	0
...............TTAAAGTTATCCCTGCATT-TGGCACGA......................................................................................................................................................................................................................	27	4	0.50	2	2	0	0	0	0	0
................TAAAGTTATCCCTGCATT-TGGCA.........................................................................................................................................................................................................................	23	6	0.33	2	0	2	0	0	0	0
.............AATTAAAGTTATCCCTGCATT-TGGCAC........................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
........................TCCCTGCATT-TGGCACGATACAGATCC.............................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
................TAAAGTTATCCCTGCATT-TGGCACGATA....................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0	0	0
..................AAGTTATCCCTGCATT-TGGCACGATA....................................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
.............AATTAAAGTTATCCCTGCATT-TGGCACG.......................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0	0	0
................TAAAGTTATCCCTGCATT-TGGCACGAT.....................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
.................AAAGTTATCCCTGCATT-TGGCACGA......................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
................................TT-TGGCACGATACAGATCCCAATTGGCTT...................................................................................................................................................................................................	29	5	0.20	1	1	0	0	0	0	0
........................................CGATACAGATCCCAATTGGCTTTATC...............................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
.................AAAGTTATCCCTGCATT-TGGC..........................................................................................................................................................................................................................	21	6	0.17	1	1	0	0	0	0	0
.................................T-TGGCACGATACAGATCCCAATTGG......................................................................................................................................................................................................	25	6	0.17	1	1	0	0	0	0	0
.................................T-TGGCACGATACAGATCCCAATTGGC.....................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0

droBip1

TGTGTTGCAGGGAAATTAAAGTTATCTCTGCATT-TGGCACGATACAGATCCCAATTGGCTTTATCTTATTTGAATTTAGGGGATGGCGGTATGTTTAGGGGATTA-----------------------------------------------------------------------------------------------------------------------------------------------------GT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGGTAGCAATAAAGTTAAGGGTAACTTAGCATT-TGTCGCGGTACAGGTTCCAGTTGGCTTTATCTACTTTAACTTTAGGAGGTGGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------GATTTTGGAAATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAAACTGT----------------TCT-TG--------------------------------------------------------------------------------------------------------------------------------------TTGAAAGGGATCAATAATTGTACTCATGTATTCCTTCGCACTGACGCCGTCAAGCAGCCTTTGGAAAACCCTTACACTGGTCCGTATGAAATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAAATTT----------------TTTAGG--------------------------------------------------------------------------------------------------------------------------------------CTGAAAGGAATCGATCAGTGCTCCTATGTTTTTATCCGTACAGATGCGGTTAAACAACGTTTGGAACCACCTTATACTGGACCTTATGAAGTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGATCCGT------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAGGAAAAGACAAATGCTCGCACGAATTCATTCGCACCGATGCCCCCAAACAGCCTTTGGAGCCACCATACACTGGACCATTTGAAGTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGGAATAGACAAGTGGTCCCACGTATTCATTCGCACCGATGCCGTCAAACATCCTTTGGAGCCACCATACACGGGCCCATTTAAAGTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGTTCCGC------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAGAAATAGACAAATGCTCTCATGTATTTATTCGGACCGATGCCGTCAAACTACCATTGGAACCGCCTTATTCAGGACCTTTTGAAGTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTCGTTGAAGGAAAATTAAAGCTGATGTTGCATT-CGGCGCGGTACAGATTCCAATTTGTCTTATCTATTTTAAATTTCGGAGTGGTAGAGAATCTTTTACG-----------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSim2

CGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGACGCTGTAAAGCAACCTCTGGAGCCTCCTTACACCGGACCGTACGAAGTC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droYak3

TTGGTTGTAGGAAAATTGAAGGTATCTTTACAAA-GGGTACGGT----ATCCCAATCAGCTTTATCCATCTTAAATTTTAGTGGTAGT------GTTTTACTATTTATTCTGTG-----------------ATTATGGGAT--------------------------------------------------------------------------------------------------------------AGTGAT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TTGGTTGTAGGAAAATTGAAGCTATCTTTACAAAAGGGTGCGGTACAGTTCCCAATCGGCTTTATCCATCTTAAATTTTTGTGGTGGGGGTAGGGTTTTACAATTTATT-CG----------CGAATAGTAATTATGGGAT------------------------------------------------------------------------------------------------------------------AG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................TACAATTTATT-CG----------CGAATAGTAAT............................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................TAGGGTTTTACAATTTATT-CG----------CGAAT..................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................TTACAATTTATT-CG----------CGAATAGTA..............................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.................................................TCCCAATCGGCTTTATCCATCTTAAA......................................................................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0	0

dvi_9701

scaffold_12958:1078670-1078820 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTGTTGAGGGAAACTGAAAGTACTTCTTACAGACAGATTGGAAAGTACTCCAGTTGGCGTGGTCAATTTTGAACCTAATTAAAGGTGGGAATTTTTGATGTTTAATATGTGTTAAAGAGTTAATAGTAATAGGGAAATGGGAAATTCTTCTGATTCTTCTAAAAGATTGGATAAATGCAAGCATGTTTTCAGTCGTACAGACACAGTCAAGTATCCACTGGAGCACCCCTATACGATCCCTTATAAAATC ************************************************..(((((((...)))))))((((((...(((((((((....)))))))))))))))....((((((....))))))....(((((.(((.((((....)))).))).)))))...(((((((...(((....)))...)))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060685 9xArg_0-2h_embryos_total	SRR060688 160_ovaries_total	M027 male body	SRR060673 9_ovaries_total	SRR060680 9xArg_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	V116 male body	SRR060667 160_females_carcasses_total	SRR1106729 mixed whole adult body	SRR060660 Argentina_ovaries_total	SRR060665 9_females_carcasses_total	V053 head	SRR060682 9x140_0-2h_embryos_total	V047 embryo
.......................................................................................................TAATATGTGTTAAAGAGTTAATAGTAA.........................................................................................................................	27	0	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................TTACAGACAGATTGGAAAGTACTCC.......................................................................................................................................................................................................	25	0	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTACAGACAGATTGGAAAAAA...........................................................................................................................................................................................................	21	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................TTACAGACAGATTGGAAAGTACT.........................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................ATAGGGAAATGGGAAATTC.......................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTACAGACAGATTGGAAAGTACTCCAGT....................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTTCAGTCGTACAGACACAGT...........................................	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................TTTCAGACAGATTGGAAAGTACTCCAG.....................................................................................................................................................................................................	27	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCTTCTGGTTCTTCTAAA.......................................................................................	18	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................GTATTCCAGTTGGCGTCGTCAAC.......................................................................................................................................................................................	23	3	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............CTGAAGGTACTTCTTTCAGAA........................................................................................................................................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................TTTCATTCGTACACACGCAGT...........................................	21	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................GTTTAAAAGATTGGATGAATG.........................................................................	21	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GTCTAGTATCCACTGATGC..........................	19	3	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................GCGAGCAGGTTTTCATTCGT......................................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................GTGAATGGTATTAGGGAAAT................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................AAAGAGGGAATTTTTGATGG.....................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................CAAGTCTCCTCTGGAGGA.........................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

-25.1	-24.9	-24.7