dvi_9695

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATGCTGTCCGTCAGGCTCTACAAGATCTACTTTCAGAATACATGTCAAATGTGAGTTATTTGGAAGCCAGAAAGCTAATATGTATATGTTTAATTATACCCTGAACCCATTGAAAATGGATATAAGGGTACATTGTATTTGTGCAAATCCAAATGTATGTAACAGGCAGAAGGAAGTATCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGACGATATAGCCATGTCCGTCTGC ************************************************************************************************************************......(((((..((((((........)))))).)))))...........*****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060675 140x9_ovaries_total	SRR060663 160_0-2h_embryos_total	V047 embryo	SRR060678 9x140_testes_total	GSM1528803 follicle cells	SRR060679 140x9_testes_total	SRR060654 160x9_ovaries_total	SRR060670 9_testes_total	SRR060682 9x140_0-2h_embryos_total	SRR060674 9x140_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060683 160_testes_total	SRR060689 160x9_testes_total
...................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAG...............................................................................	25	0	20	7.05	141	141	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTACTTTCAGAATACATGT..............................................................................................................................................................................................................	19	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0
.........................TCTACTTTCAGAATACATGT..............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TCCAAATGTATGTAACAGGC....................................................................................	20	0	20	0.60	12	0	0	0	12	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GAGACGATATAGCCATGTCCGTCT..	24	0	10	0.20	2	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TATATATTCTTGATCAGCATCAATAG............................	26	0	20	0.15	3	0	0	0	0	0	3	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CAGCATCAATAGCCGAGACG....................	20	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................................TATAAGGGTACATTGTATTTGTGC...........................................................................................................	24	0	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................TAAGGGTACATTGTATTTGTGC...........................................................................................................	22	0	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TAAGGGTACATTGTATTTGTG............................................................................................................	21	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................AAGGGTACATTGTATTTGTGC...........................................................................................................	21	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TATTCTTGATCAGCATCAATAG............................	22	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................TATTCTTGATCAGCATCAAT..............................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................TCCAAATGTATGTAACAGGCAG..................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................ATCAGCATCCATAGCCGAGAC.....................	21	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................CAGCATCCATAGCCGAGACGA...................	21	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG.......................	25	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATGTAACAGGCAGAAGGAAGTATC.......................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................TCCAAATGTATGTAACAGGCA...................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................CCAAATGTATGTAACAGGCAGAAGG..............................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:974681-974931 -	dvi_9695	ATGCTGTCC-----------------------------G-------------------------TCAGGCTCTAC-------------AA-------G------------------------------------------------------------------------------------ATCTACTTTCAGAATACA--TGT---------------------------------------------------------------CAAATG----------------------------TGAGTTATTTGGAAGCCAG------AAA-GCTAAT-----A--T--------GTATAT--GTTTAATTATACCCTGAACCCATTGA---AAATGGA-TATAAGGGTACATTGTATTTGTGC-AAATCCAAATGTATGTAACAGGCAGAAGGAAGTATCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGACGATATAGCCATGTCCGTCTGC----
droMoj3	scaffold_6541:1413200-1413448 -		GTTTTAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCACAT-----C--TTCTTT-----------ATCTTTTTATACCCTGAACCCATTGA---AAATGGGAAATCAGGGTATAATGGTTTTGT-G-------AAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCCGT----
droGri2	scaffold_14906:2513638-2513889 +		TTGCTGTAG-----------------------------A--------------------------CTGGT----T-------------AATCTGCATACTTTGGTCTTTGTATACAAGTATAATATGTAGATTAATAATAC------------------GAAATTCCAGAA---------------------------------------G------------------------------------------------------------------------------------------------------------------------TTATAAAAT-------------GCT-------TTTAATTTTAAACTGAACCCATTAAAAATG--GGT-AAAAAGGGTATAATGCTTTTGTGC-------AAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATGCTTGATCAGGGTCAACAGTCGAGTCGATTTAGCCATGTCCGTCCGT----
droWil2	scf2_1100000004585:6909472-6909692 -		ATGATATCA-----------------------------G-------------------------TTTGGTTCTGT-------------GA-------G-----------------------------------------------------TAAGCACATATGTACATAACATTTGATTAAT--------------------------------------------------------------CCAGA----------------------------------------------TTAACAA-------------------------------------TA---------------------TCTTTATTATACCATACACC-------CATA--GGG-TGAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGT----
dp5	Unknown_singleton_2095:890-1135 -		ATGAAAACT-----------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTGAAAAGG--TGTACAAAGTGAGTCCTACCTAGTCCTACCCT----------------G------AAACCTTTTGTGTGTTGTAGA-----------------TTAAT------------------------------------AAA-----------------------TCCTTTTTATACCCGATACT-------CAAAATGAG-TATTGGGGTATATTAGATTTGTGGTGAAAGTAGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCAAGTCGATTGAGCCATGTCCGTCTGT----
droPer2	scaffold_72:254472-254721 +		TTTCTGTCC-----------------------------A-------------------------TTCGGTTTAAA-------------AC-------A-----------------------------------------------------G------------------------------ATTTATTGTAAGACTACG-GCAT---GAATGGT----------------CACCA-----------------------------------------AAATGAAAATTC-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTTTTATTATACCCGATACT-------CAAAATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAAAAGCCGAGTCCATTGAGCCATGTCTGTCTGT----
droAna3	scaffold_12947:75025-75273 +		TCAGTTAGGTTCTGATATGAAACTGCATTTAAAAAACGGTTAAAAGTTATTTGCAAGCT------------CT------------------------------------------------------------------------GCTTA-------------------------------------------------------------------------------------------------A----TATAATGATATTTG-------------------CAATTA-----------TTA------------CCTA------ATT-CAAAAT-----A----ATAT-----------ATATTTTTATACCCT------------TGCA--G-------ACTGTATTATAATTTTGGTC-------AAAAATGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATAAGCATGTCCGTCTGT----
droBip1	scf7180000396574:341559-341772 +		ATCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATAATATA--T-----------------------------------------GTAGTTTTCA-----------------GTT-----------------------------------------AGAAGT------TAGGCTGAAAAACGTTTCTTCCTT-----------TGATTTTAATACCCGGTACT-------TGTA--GAG-TACAAGGATATATTGTAGTCGTGT-------GAATGTATGAAACATAGAAAAGGCATTATCTCCGACCTCATAAAGTATATATATTCTTCATCAGCATCAACAGCCGAGTCGATAAAGCCACGTCTGTTTAC----
droKik1	scf7180000302643:821065-821287 +		ATATTTTTA-----------------------------A-------------------------TCAAGCTGTTT-------------AA-------G-----------------------------------------------------A--AC----------------------------T---TTTCATAAAATA--AAT---------------------------------------GCAAACG---------------------------------------------------AAACTTAAA-GGTAGCCGT------AAA-TCAAACAAC----------------------GTTTTTTTATACCCT------------TG-----------CAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGT
droFic1	scf7180000453089:11605-11837 +		GACGCCTGC-----------------------------C------------------------AT--------TCCAGTCATAATGAT----------------------------------------------------------------------------------------------TGC---TTTTACAATATT--------------------------------------------GCGACTG--------------------AGG----------------------------TGGGTTATTTGCAA-CCGT-------GT-GCCATT-----A--C--ACAGTCT-------TTTTTTTTATACCCT------------TGCA--GAG-G-AAAGGGTATTATAATTTTGGCC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGTAGAATCGGAATACGTCTGTACGTCTGT----
droEle1	scf7180000488291:28805-29027 +		TCAGCTTCC-----------------------------A-----------------------------------A-------------AA-------A------------------------------------------------------------------------------------TGTTACATTCAAAATGT---------------------------------------------TCAGTTTTTA-----------------ATC----------------------------AGGGTCATTGGATT-CAGGGACCAAAAA-AATAAC-----A--T--TTT-----------TTGTTTTTATACCCT------------TGC---------AGAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGT----
droRho1	scf7180000780111:15913-16139 -		ATACCCTTT-----------------------------G-------------------------CCAGGATTTAT-------------AA-------A-----------------------------------------------------GATTTGCTAATGGA-AGAATATTTTATT-----------------------------------------------------------------------------------------ACTTTGAAAAAAAGACAATTC-----------------------------------------------------------TAA-----------TGATTATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATATTGTATTCATGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGACCTAGCCATGTCCGTCTGT----
droBia1	scf7180000299899:9325-9544 -		AGTGCGCGA-----------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTACACGAGTCTTTTTCTATTGTCAAAATGTATT-----------------------TTTTTGCTAAATTG---------------------------------------------------------------------TTGATTTTT--GATTCATTACACCCGTTACA-------CGTA--GAG-TAAAAGGGTACACTAGATTCGTCG-------GAAAGTATGTAACAAGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCACGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCAGT----
droTak1	scf7180000414114:21996-22223 +		ATGCTATTT-----------------------------G-----------------------CAT--------TTTAAACACACAAAA----------------------------------------------------------------------------------------------ATC---TATAAGAAAATA--TCT--TCGAT--------------------------------------------------------ATGTTGTAAAAATGTAAAATC-----------AA-------------------------------------TA---------------------TTTTAATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGT----
droEug1	scf7180000409554:3897557-3897767 +		TCTGCAAA-------------------------------------------------CT------------CTT------------------------------------------------------------------------------------------------------------------TATTAGAATAT---------------------------------------------GCAAATT--------------------TTG------------TGGGC------------------------AAACAA------AGA-GCAAAT-----A--T--TTT-----------GTATAATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGT----
dm3	chr2RHet:866672-866889 -		ACGTTAAGA-----------------------------A-------------------------TCATATGTGGA-------------AA-------G-----------------------------------------------------GGAACTTTTGTTGACAAAATGCTAGAATTGT------T----TA---------------G------------------------------------TG----------------------------------------------TTGACGT-------------------------------------TC---------------------ATTTGTATATACCTGTTACT-------ACTA--GAG-TAAAAAGGTATACTAGATTTGTTG-------CAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCTTATAAAGTATATATATTCTTAATCAGGAT----AGCCGAGTAAAACTAACCATGTCCGTCTGT----
droSim2	node_6958:2145-2374 -		TGTAAG---------------------------------------------------CTTTACAT---------------------------------------------------------------------------------------------------------------------------TATCAGGAAATA--CAT--ACAATGAG--------------------------------------------------------CTTTAA--------CTGAGCAATGTAAAAAAGAAGTCATTTACAT-------------------------------CCTT-----------ACATCATTATACCCGTTACT-------CGTC--GAG-TAAAAGGGTATACTAGATTCGGTG-------AAAAGTATGTAACAAGAAAAAGGAAGAGTTTCCGACTATATAAAGTGTATATATTATTGATCAGGATCAAAAGCCGAGTCGATCCAGCCATGTCCGTTTGT----
droSec2	scaffold_8:3284781-3284984 +		ATTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGAATAACACTGT---------------------------------------------------------------GAAGTA----------------------------TGGGTTTCTTGCAA-CCGG-------AA-CCAAAT-----------TTT-----------ATATTGTTATACCCTTTACT-------CGTA--GAG-TAAAAGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAATCGCTTCCGACTATATAAAGTATATATATTCCTGATCAGGATCAATAGCCGAGTCTATCTAGCCATCTTC----------
droYak3	v2_chrX_random_022:53059-53305 -		ATGCGATCC-----------------------------G-------------------------TTGTCATCAAA-------------AA-------G------------------------------------------------------------------------------------AGTTAATTAAAGAAAACA--AAT---TAATGAG--------------------------------------------------------C---------------AAGCAATATAAGAA-----------GAAAAATAT------AAA-TCTAAT-----A--A--------ATAAAAATTAGTTATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAATTATATATATTCTTGATCAGGAACAACAGCCGAGTCGACTTGGCCATGTCCGTCTGT----
droEre2	scaffold_4784:22531361-22531612 +		GCCATGTTC-----------------------------G-------------------------TCAGACCCTCT-------------AA-------T-------------ATTCATTTAGAAAATGTAAATTAATAATTGCTGTGCCTTGGGAAT--TTTAAGTCCTAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGATAT---CGCTTGCAT-----------TCATTTTTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATACGTTG-------AAACGTATGTAAGAGGCAGAAGGAAGCGTTTCCAAACATTTAAAGTATATATATTCTTGATCATGATCAATAGCCGAGTCGAACTGGCCGTGTCCGTATGT----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATGCTGTCC-----------------------------G-------------------------TCAGGCTCTAC-------------AA-------G------------------------------------------------------------------------------------ATCTACTTTCAGAATACA--TGT---------------------------------------------------------------CAAATG----------------------------TGAGTTATTTGGAAGCCAG------AAA-GCTAAT-----A--T--------GTATAT--GTTTAATTATACCCTGAACCCATTGA---AAATGGA-TATAAGGGTACATTGTATTTGTGC-AAATCCAAATGTATGTAACAGGCAGAAGGAAGTATCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGACGATATAGCCATGTCCGTCTGC----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAG...................................................................................	25	20	7.05	141	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	141	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTACTTTCAGAATACA--TGT---------------------------------------------------------------...........................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCTACTTTCAGAATACA--TGT---------------------------------------------------------------...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC........................................................................................	20	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGATATAGCCATGTCCGTCT......	24	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGCATCAATAG................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGACG........................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TATAAGGGTACATTGTATTTGTGC-...............................................................................................................	24	18	0.06	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTACATTGTATTTGTGC-...............................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTACATTGTATTTGTG.................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTACATTGTATTTGTGC-...............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATAG................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAAT..................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAG......................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG...........................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGTATC...........................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCA.......................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGGCAGAAGG..................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTTTTAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCACAT-----C--TTCTTT-----------ATCTTTTTATACCCTGAACCCATTGA---AAATGGGAAATCAGGGTATAATGGTTTTGT-G-------AAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCCGT----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	24	7	58.71	411	86	0	0	0	325	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-T...........................................................................................................................................................................................................	25	7	21.43	150	51	0	0	0	99	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	23	20	10.05	201	109	3	0	0	89	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TC..........................................................................................................................................................................................................	26	7	8.71	61	37	0	0	0	24	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCAC........................................................................................................................................................................................................	28	7	8.14	57	32	0	0	0	25	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCA.........................................................................................................................................................................................................	27	7	7.43	52	48	0	0	0	4	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCACA.......................................................................................................................................................................................................	29	7	6.71	47	44	0	0	0	3	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-C...........................................................................................................................................................................................................	25	7	6.14	43	1	0	0	0	42	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................	29	20	4.05	81	63	0	0	0	18	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................	27	20	3.00	60	60	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	25	7	3.00	21	6	0	0	0	15	0
....TAACT-----------------------------GTTCGACTTTGCTTTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	2.30	46	22	0	0	0	24	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	2.00	40	37	0	0	0	3	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCA.........................................................................................................................................................................................................	26	7	1.86	13	13	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	23	7	1.57	11	11	0	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	1.50	30	14	0	0	0	16	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.10	22	22	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TGTGAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	26	20	1.10	22	15	1	0	0	6	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.95	19	0	0	0	0	19	0
...................................................TTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGC.................................................................................................................................................................................................................................................................................	26	20	0.90	18	13	0	0	0	4	1
.........................................................................................................................................................................................................................................................................TGTGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	27	7	0.86	6	3	0	0	0	3	0
..................................................TTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGC.................................................................................................................................................................................................................................................................................	27	20	0.85	17	14	0	0	0	3	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.75	15	15	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	24	20	0.75	15	10	0	0	0	5	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACC...................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.75	15	6	0	0	0	9	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-T...........................................................................................................................................................................................................	26	7	0.71	5	1	0	0	0	4	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCAC........................................................................................................................................................................................................	27	7	0.71	5	5	0	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.70	14	9	0	0	0	5	0
..TTTAACT-----------------------------GTTCGACTTTGCTTTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.70	14	8	0	0	0	6	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTT..................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.60	12	8	0	0	0	4	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GCC-T...........................................................................................................................................................................................................	24	7	0.57	4	4	0	0	0	0	0
.............................................TTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTT.......................................................................................................................................................................................................................................................................................	26	20	0.50	10	9	0	0	0	1	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................	28	20	0.45	9	9	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-C...........................................................................................................................................................................................................	26	7	0.43	3	0	0	0	0	3	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCACA.......................................................................................................................................................................................................	28	7	0.43	3	3	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	22	20	0.40	8	8	0	0	0	0	0
.......................................TTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................	27	20	0.40	8	0	0	0	0	8	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACA.......................................................................................................................................................................................................................	20	20	0.35	7	4	0	0	0	3	0
........................................TCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................	26	20	0.35	7	7	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTGTGAACTGTGA--------CTGCTC------------------------TAACA.......................................................................................................................................................................................................................	24	20	0.30	6	4	0	0	0	2	0
...................................................TTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTT...............................................................................................................................................................................................................................................................................	28	20	0.30	6	5	0	0	0	1	0
...................................................................................................................................................TTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTG.....................................................................................................................................................................................................................................................................	26	20	0.30	6	6	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCA.........................................................................................................................................................................................................	28	7	0.29	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TC..........................................................................................................................................................................................................	27	7	0.29	2	0	0	0	0	2	0
........................................................................T------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAAC.......................................................................................................................................................................................................................................................................	27	20	0.25	5	4	0	0	0	1	0
.............................................TTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCT........................................................................................................................................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
........T-----------------------------GTTCGACTTTGCTTTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	5	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGT...........................................................................................................................................................................................................................................................................	25	20	0.25	5	3	0	0	0	2	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAAC.......................................................................................................................................................................................................................................................................	29	20	0.20	4	2	0	0	0	0	2
........................................................................................................................................................................................................................................................................TTGTGAACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	26	20	0.20	4	3	0	0	0	1	0
....TAACT-----------------------------GTTCGACTTTGCTTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	1	0	0	0	3	0
..............................................................................................................................................................................................................................................................TTCAGAGCTTTTGTGAACTGTGA--------CTGC......................................................................................................................................................................................................................................................	27	20	0.20	4	4	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TGTGAACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	25	20	0.20	4	4	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GTGAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	25	20	0.20	4	4	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAT------GCC-TCACAT-----C--TTCTTT-----------ATCTT........................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................TTTTGTGAACTGTGA--------CTGCTC------------------------TAACA.......................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	3	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.....AACT-----------------------------GTTCGACTTTGCTTTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
.............................................TTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTC......................................................................................................................................................................................................................................................................................	27	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................TTTTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	29	20	0.15	3	2	0	0	0	1	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTGTGAACTGTGA--------CTGCTC------------------------TAACAT------................................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................T----TCTTCAGAGCTTTTGTGAACTGTGA--------CT........................................................................................................................................................................................................................................................	28	20	0.15	3	1	0	0	0	2	0
.TTTTAACT-----------------------------GTTCGACTTTGCTTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-A...........................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCAT........................................................................................................................................................................................................	28	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TC------------------------TAACAT------GCC-TCACAT-----C--TTCTTT-----------.............................................................................................................................................................................	24	7	0.14	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCC.........................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................CTGTGA--------CTGCTC------------------------TAACAT------GCC-TCACA.......................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCA.........................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGTGA--------CTGCTC------------------------TAACAT------GCC-TCACAT-----C--T.............................................................................................................................................................................................	28	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTGTGA--------CTGCTC------------------------TAACAT------GCC-TCACAT-----.................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-TCAC........................................................................................................................................................................................................	29	7	0.14	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GTGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................TGCTC------------------------TAACAT------GCC-TCACAT-----C--TTCT..........................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................TTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	28	7	0.14	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................TTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GCC-T...........................................................................................................................................................................................................	29	7	0.14	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------GCC-TC..........................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTGTGA--------CTGCTC------------------------TAACAT------GCC-............................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	1	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTG............................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
....................................................TCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGC.................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	2	0
...................................................TTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAG..................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................TTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTGT....................................................................................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	2	0
...............................................TGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGA...................................................................................................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
....TAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................TTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACT......................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGACGACGAGCTGAGT..........................	22	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAACTGTGA--------CTGCTC------------------------TAACAT------................................................................................................................................................................................................................	21	20	0.10	2	1	0	0	0	1	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTT...............................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................TTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAAC.......................................................................................................................................................................................................................................................................	24	20	0.10	2	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................TTTTGTGAACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTT..................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
..................................................TTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCT................................................................................................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	27	20	0.10	2	0	1	0	0	1	0
.......................................................................................................................................................................................................................................................................TTTGTGAACTGTGA--------CTGCTC------------------------TAACA.......................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..TTTAACT-----------------------------GTTCGACTTTGCTTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	1	0	0	0	1	0
.............................................TTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAG....................................................................................................................................................................................................................................................................................	29	20	0.10	2	2	0	0	0	0	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------CC------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	2	0
..............................................TTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTT.......................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGAGTCGATATAGCCCT..............	22	20	0.10	2	2	0	0	0	0	0
.TTTTAACT-----------------------------GTTCGACTTTGCTTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	1	0	0	0	1	0
.TTTTAACT-----------------------------GTTCGACTTTGCTTTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.10	2	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................ACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
....TAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................TTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGT...........................................................................................................................................................................................................................................................................	20	20	0.10	2	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................TTCAGAGCTTTTGTGAACTGTGA--------CTG.......................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................T----TCTTCAGAGCTTTTGTGAACTGTGA--------C.........................................................................................................................................................................................................................................................	27	20	0.10	2	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATATATTCTTGATC...........................................	21	20	0.10	2	2	0	0	0	0	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTT.............................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................TGAACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTGTG...................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................ACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTT.......................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTCAGAGCTTTTGTGAACTGTGA--------CC........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAAC.......................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...............................................TGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTT.......................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
..TTTAACT-----------------------------GTTCGACTTTGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.............................................TTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCA.....................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
........T-----------------------------GTTCGACTTTGCTTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.......................................TTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTT..................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
...............................................TGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAG..................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
....TAACT-----------------------------GTTCGACTTTGCTTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................GACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----...........................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................CAGAGCTTTTGTGAACTGTGA--------CTGC......................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...........................................ACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TC.........................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CTTTTGTGAACTGTGA--------CTGCTC------------------------TAA.........................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.TTTTAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TTTGTGAACTGTGA--------CTGCTC------------------------TA..........................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTG..........................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.............................................TTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TC.........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................TTTGTGAACTGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.......................................................................CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAAC.......................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
................................................GCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGC.................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GTGAACTGTGA--------CTGCTC------------------------T...........................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
GTTTTAACT-----------------------------GTTCGACTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGTGA--------CTGCTC------------------------TAACAT------GC..............................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................TTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCA.....................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....AACT-----------------------------GTTCGACTTTGCTTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................CGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.TTTTAACT-----------------------------GTTCGACTTTGCTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................TTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGA...................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
........................................TCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----...........................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
........................................................................T------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGT...........................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................GTTCGACTTTGCTTTCAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
....TAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTG.....................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
........T-----------------------------GTTCGACTTTGCTTTCAAACT------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACT......................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................TTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCT................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.......................................TTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----...........................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.......................................TTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------ACC...................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................TTTGTGAACTGTGA--------CTGC......................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
......................................GTTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------AAAA..................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTT..............................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGTGAACTGTGA--------C.........................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	1	0
........T-----------------------------GTTCGACTTTGCTTTCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................TTCAGAGCTTTTGTGAACTGTGA--------CT........................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCAAACT------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................................TTGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----...........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCTGAACCC........................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...TTAACT-----------------------------GTTCGACTTTGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................T------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGC...........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
...TTAACT-----------------------------GTTCGACTTTGCTTTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......................................TTCGACTTTGCTTTCAAACT------------CT------------------------------------------------------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
..................................................TTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTT...............................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TCTTCAGAGCTTTTGTGAACTGTG...................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................TTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAG..................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TGTGAACTGTGA--------CTGCTC------------------------TAACAT------................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TC-------------------------------------------------------------------------------------------------T----TCTTCAGAGCTTTTGT...........................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....TAACT-----------------------------GTTCGACTTTGCTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAATC..............................................................................	21	20	0.05	1	0	0	0	0	0	1
.TTTTAACT-----------------------------GTTCGACTTTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...............................................TGCTTTCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAG....................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
....................................................TCAAACT------------CT------------------------------------------------------------------------ACTTC-------------------------------------------------------------------------------------------------T----TCTTCAGAG..................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GTGAACTGTGA--------CTGCTC------------------------TAACAT------G...............................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

TTGCTGTAG-----------------------------A--------------------------CTGGT----T-------------AATCTGCATACTTTGGTCTTTGTATACAAGTATAATATGTAGATTAATAATAC------------------GAAATTCCAGAA---------------------------------------G------------------------------------------------------------------------------------------------------------------------TTATAAAAT-------------GCT-------TTTAATTTTAAACTGAACCCATTAAAAATG--GGT-AAAAAGGGTATAATGCTTTTGTGC-------AAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATGCTTGATCAGGGTCAACAGTCGAGTCGATTTAGCCATGTCCGTCCGT----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCAT............................................................................	18	20	0.05	1	0	1

droWil2

ATGATATCA-----------------------------G-------------------------TTTGGTTCTGT-------------GA-------G-----------------------------------------------------TAAGCACATATGTACATAACATTTGATTAAT--------------------------------------------------------------CCAGA----------------------------------------------TTAACAA-------------------------------------TA---------------------TCTTTATTATACCATACACC-------CATA--GGG-TGAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAG...............................................................................	23	20	0.25	5	0	0	0	5	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCATCT..........................................................................	28	20	0.15	3	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TGAAATGGTATATTAAAGTCGC..................................................................................................................	22	20	0.15	3	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAACAACCGAGTCGAT......................	21	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATCTCC........................................................................	25	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TTATTATACCATACACC-------CA................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAACAACCGAGTCGATCTAGC.................	28	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCGAGTCGATCTAGCCATGTCCG.........	29	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATC.....................................	21	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAAAGTATATATATTCTTGATC...........................................	26	20	0.05	1	0	1	0	0	0

dp5

ATGAAAACT-----------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTGAAAAGG--TGTACAAAGTGAGTCCTACCTAGTCCTACCCT----------------G------AAACCTTTTGTGTGTTGTAGA-----------------TTAAT------------------------------------AAA-----------------------TCCTTTTTATACCCGATACT-------CAAAATGAG-TATTGGGGTATATTAGATTTGTGGTGAAAGTAGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCAAGTCGATTGAGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTG................................................................................................	23	15	77.60	1164	0	805	10	0	49	0	27	246	27	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGT...............................................................................................	24	15	38.20	573	0	350	14	0	88	0	33	83	5	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGT.................................................................................................	22	15	37.40	561	0	308	20	0	45	0	14	156	18	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTG..................................................................................................	21	15	17.73	266	0	198	1	0	23	0	18	13	13	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTA..............................................................................................	25	15	11.13	167	0	93	2	0	8	0	8	50	6	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCG........................	25	20	5.85	117	0	117	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTG................................................................................................	22	15	4.33	65	0	60	0	0	1	0	0	1	3	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAA.............................................................................................	26	15	3.93	59	0	39	1	0	7	0	3	9	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGAT......................	27	20	3.30	66	0	50	3	0	0	0	0	10	3	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATG....................................................................................................	19	16	3.19	51	0	42	0	0	1	0	0	4	4	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAG...........................	22	20	3.05	61	0	49	1	0	0	0	0	7	4	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTC.........................	24	20	3.05	61	0	46	13	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGT..........................	23	20	2.55	51	0	46	5	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTGT...............................................................................................	23	15	2.13	32	0	27	0	0	2	0	1	2	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTG..................................................................................................	20	15	2.07	31	0	21	0	0	0	0	2	4	4	0
.........................................................................................................................................................................................................................................................................TGTGTGTTGTAGA-----------------TTAAT------------------------------------AAA-----------------------TCC..........................................................................................................................................................................	24	2	2.00	4	0	0	0	0	0	0	0	4	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGT.................................................................................................	21	15	1.80	27	0	17	0	0	3	0	0	6	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAACG...........................................................................................	28	15	1.73	26	0	19	0	0	0	0	1	5	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAACG...........................................................................................	26	15	1.67	25	0	12	0	0	1	0	2	8	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGT...................................................................................................	20	16	1.63	26	0	19	1	0	3	0	1	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGA.................................................................................................	22	16	1.56	25	0	21	0	0	2	0	0	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTA................................................................................................	23	17	1.41	24	0	23	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAAC............................................................................................	27	15	1.40	21	0	17	1	0	1	0	1	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTG................................................................................................	21	15	1.40	21	0	17	0	0	0	0	0	2	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTA..............................................................................................	23	15	1.33	20	0	8	0	0	2	0	3	3	4	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGA.......................	26	20	1.15	23	0	0	0	0	0	0	0	22	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGATT.....................	28	17	1.06	18	0	18	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGA...............................................................................................	24	20	0.90	18	0	18	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAAC............................................................................................	25	15	0.87	13	0	10	0	0	1	0	1	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAACGT..........................................................................................	27	15	0.87	13	0	11	0	0	0	0	0	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTT................................................................................................	23	16	0.81	13	0	12	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAAA............................................................................................	27	16	0.81	13	0	7	1	0	0	0	2	3	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGT.................................................................................................	20	15	0.67	10	0	6	2	0	0	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTAGATGTGTG................................................................................................	24	15	0.60	9	0	3	0	0	0	0	0	6	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAA.............................................................................................	24	15	0.53	8	0	6	0	0	0	0	1	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTT..............................................................................................	25	16	0.50	8	0	7	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTAGATG....................................................................................................	23	16	0.50	8	0	4	0	0	0	0	0	4	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTG..................................................................................................	19	15	0.47	7	0	5	0	0	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGAA................................................................................................	23	20	0.45	9	0	9	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTAGATGT...................................................................................................	21	16	0.44	7	0	0	0	0	1	0	4	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCC..................................................................	24	20	0.40	8	0	8	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGC...............................................................................................	24	20	0.40	8	0	2	6	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGC.................................................................................................	22	17	0.35	6	0	0	6	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGTA..............................................................................................	21	15	0.33	5	0	0	0	0	0	1	2	2	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGTAACG...........................................................................................	25	15	0.33	5	0	2	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTGTA..............................................................................................	24	15	0.33	5	0	4	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGA.................................................................................................	21	16	0.31	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAAA............................................................................................	25	16	0.31	5	0	4	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTAGATGTGTGTAACGT..........................................................................................	21	16	0.31	5	0	1	0	0	0	0	4	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAGTAGA......................................................................................................	24	17	0.29	5	0	0	0	0	0	0	0	4	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGTAAC............................................................................................	24	15	0.27	4	0	1	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTAGATGTG..................................................................................................	22	15	0.27	4	0	2	0	0	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTTA...............................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAGTAGATG....................................................................................................	21	16	0.25	4	0	0	0	0	1	0	1	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAT.............................................................................................	26	16	0.25	4	0	2	0	0	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTAGATG....................................................................................................	20	16	0.25	4	0	2	0	0	0	0	1	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTAGATGTGTGTAACG...........................................................................................	20	17	0.24	4	0	1	0	0	0	1	1	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCAAGTCGATTGAGCCATG.............	26	9	0.22	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGT...............................................................................................	20	15	0.20	3	0	1	0	0	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATAGCCAA............................	26	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTGTAA.............................................................................................	25	15	0.20	3	0	1	0	0	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAC.............................................................................................	26	15	0.20	3	0	1	0	0	0	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGT...............................................................................................	22	15	0.20	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAGTAGATG....................................................................................................	24	16	0.19	3	0	1	0	0	0	0	1	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTAGA......................................................................................................	21	17	0.18	3	0	0	0	0	0	0	0	3	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTTT.............................................................................................	26	18	0.17	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCCGTCTG.....	21	12	0.17	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATAA...................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATGTGTGTAACGTCCAGAAGG..................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGTCGA.......................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTG..................................................................................................	18	15	0.13	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGTA..............................................................................................	22	15	0.13	2	0	1	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGT...............................................................................................	21	15	0.13	2	0	0	0	0	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTAGATGTGTGTAACG...........................................................................................	21	16	0.13	2	0	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCAAGTCGATTGAGCCATG.............	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGT...................................................................................................	19	16	0.13	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAGTAGATG....................................................................................................	26	16	0.13	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGAT.....................................................................................................	18	16	0.13	2	0	0	0	0	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTTG...............................................................................................	24	17	0.12	2	0	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCAAGTCGATT.....................	24	18	0.11	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATA....................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCAAG...........................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAG...........................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATA.................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGTCGAT......................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAAAAA..........................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTATATTAGATTTGTGGT...............................................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGATGTGTGTAACGTCC........................................................................................	20	20	0.10	2	0	0	0	0	0	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAG..........................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCAA............................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCA.............................	24	20	0.10	2	0	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGATTGAGCCATGTC...........	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTCGATTGAGCCATG.............	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCCGTCTGT----	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGTACAAAGTGAGTCCTACCTAGT.....................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGTAGATGTGTGTAACGTCC........................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGTAACGTCC........................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTAGATGTGT.................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAGTAGATGTG..................................................................................................	23	15	0.07	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTAGATGTG..................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGT.................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGTAA.............................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTG................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTAGATGTGTGTAACGTCC........................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGTAGATGTGTGTAACGT..........................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGTAACG...........................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGTAA.............................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTAGATGTGT.................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTAGATGTGTGTAAC............................................................................................	28	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTGTAACG...........................................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGTAAC............................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGTAACGT..........................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGTAGATGTGTGTAACG...........................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTC................................................................................................	23	15	0.07	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTG................................................................................................	20	15	0.07	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTAACGT..........................................................................................	29	15	0.07	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAGTAGAT.....................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTAGATGT...................................................................................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCCAAGTCGATTGAGC.................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCAAGTCGATTGAG..................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTGTAAA............................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTAGATGTGTGTAACGTC.........................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTAGATGTGTGTAACGTT.........................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTAGAT.....................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATG....................................................................................................	18	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTAGATG....................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTA................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCAAGTCGATTGAGCC................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCAAGTCGATTGAG..................	21	17	0.06	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTGTAT.............................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGTTG...............................................................................................	23	17	0.06	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTAGATGTGTTG...............................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTAGATGTGTGTAACGTA.........................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGTCGATT.....................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCCGTCTT.....	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTAG.......................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTC..................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATC....................................................................................................	19	18	0.06	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCAAGTCGATT.....................	20	18	0.06	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCAAGTCGATT.....................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAGTAG.......................................................................................................	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAGTA........................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGTGTGTATA............................................................................................	27	19	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGA...................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTCCGACCC...................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCA.............................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAGTA........................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGTGTAACGTCCAGAAGGAA................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGATGTGTGTAACGTC.........................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TTTATACCCGATACT-------CAAAAT............................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTAGATGTGTGC...............................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGT..........................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCAAGTCGA.......................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGTGTGTAACGTCCAGAAGG..................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAGATGTGTGTAACGT..........................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCAA............................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGC...............................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTAGATGTGAA................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAA............................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTAGATGC...................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGATGTGTGTAACGTCCAGAAGGA.................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGATGTGTGTAACGTC.........................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCCGTC.......	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AAAATGAG-TATTGGGGTATAT...........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCAAGTCG........................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCA.............................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAG.........................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGTGGTGAA............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCAAGTCG........................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCAAGTCGAT......................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATA........................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCAAGTCGA.......................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TACCCGATACT-------CAAAATGAG-T.......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

TTTCTGTCC-----------------------------A-------------------------TTCGGTTTAAA-------------AC-------A-----------------------------------------------------G------------------------------ATTTATTGTAAGACTACG-GCAT---GAATGGT----------------CACCA-----------------------------------------AAATGAAAATTC-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTTTTATTATACCCGATACT-------CAAAATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAAAAGCCGAGTCCATTGAGCCATGTCTGTCTGT----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................TACT-------CAAAATGAG-TATTGGGG................................................................................................................................	21	20	3.95	79	0	79	0	0	0	0
.........................................................................................................................................................................................TATTGTAAGACTACG-GCAT---GAATGG.................................................................................................................................................................................................................................................................................................................................	25	14	2.00	28	1	26	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TGAG-TATTGGGGTATATTAGA.......................................................................................................................	21	20	1.05	21	0	0	0	0	0	21
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAAAGCCGAGTCC........................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................TC-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTTT.........................................................................................................................................................................	24	11	0.55	6	0	6	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAGT..........................	25	20	0.20	4	0	4	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAAGTGGATGTGTGTAACG...........................................................................................	23	20	0.20	4	0	0	0	0	0	4
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTGAGCCATGTCTGTCT......	22	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................TAAGACTACG-GCAT---GAATGGT----------------CACC............................................................................................................................................................................................................................................................................................................	25	12	0.17	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAAAGCCGAGTC.........................	24	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................................................ATTGTAAGACTACG-GCAT---G......................................................................................................................................................................................................................................................................................................................................	19	14	0.14	2	2	0	0	0	0	0
.........................................................................................................................................................................................TATTGTAAGACTACG-GCAT---GAATG..................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	2	0	0	0	0
..........................................................................................................................................................................................ATTGTAAGACTACG-GCAT---GAATGG.................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	2	0	0	0	0
.........................................................................AA-------------AC-------A-----------------------------------------------------G------------------------------ATTTATTGTAAGACTACG-G.............................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTC-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTTT.........................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................TC-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTTTTA.......................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................C-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTTTTAT......................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0
..............................................................................................................................................................................................TAAGACTACG-GCAT---GAATGGT----------------CAC.............................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................TTGTAAGACTACG-GCAT---GAATGGT----------------C...............................................................................................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0
.........................................................................................................................................................................................TATTGTAAGACTACG-GCAT---GAATGGT----------------C...............................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0
..........................................................................................................................................................................................ATTGTAAGACTACG-GCAT---GAAT...................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................C-------------------------------T------CTA-ACTCA---------------CTCGTTTTA--GTT..........................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................TGAAAATTC-------------------------------T------CTA-ACTCA---------------CTCGTT..................................................................................................................................................................................	24	14	0.07	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................T------CTA-ACTCA---------------CTCGTTTTA--.............................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAGTC.........................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCATAA..............................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAAAGCCGAG...........................	22	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAAAGCCGAGA..........................	23	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAG...........................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGA............................	23	20	0.05	1	0	1	0	0	0	0

droAna3

TCAGTTAGGTTCTGATATGAAACTGCATTTAAAAAACGGTTAAAAGTTATTTGCAAGCT------------CT------------------------------------------------------------------------GCTTA-------------------------------------------------------------------------------------------------A----TATAATGATATTTG-------------------CAATTA-----------TTA------------CCTA------ATT-CAAAAT-----A----ATAT-----------ATATTTTTATACCCT------------TGCA--G-------ACTGTATTATAATTTTGGTC-------AAAAATGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATAAGCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACA.............................................................................	22	20	0.30	6	6	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGAGTCGATATAAGCATGTCCGTC.......	28	20	0.25	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACATCT..........................................................................	25	20	0.20	4	0	0	0	0	4	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTCCTGAGTCGATATAAGCATG.............	26	20	0.20	4	0	4	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTGCAACGCAGTGAAGGAGAC..............................................................................	26	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGCAGTGAAGGA.................................................................................	22	20	0.10	2	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGCAGTGAAGGAGAC..............................................................................	25	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGAAGGAGACATCTCC........................................................................	21	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAAGCATGTC...........	19	20	0.05	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTTGGTC-------AAAAATGTGC...............................................................................................	26	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGCAGTGAAGGAGACA.............................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTTGATCAGGAT......................................	22	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAGTCGATATAAGCATGT............	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATAATTTTGGTC-------AAAAATGTGC...............................................................................................	27	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGGTC-------AAAAATGTGCAACGC..........................................................................................	29	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTC-------AAAAATGTGCAACGCAGT.......................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCAACGCAGTGAAGGAGACA.............................................................................	25	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................C-------AAAAATGTGCAACGCAGTGAAGGA.................................................................................	25	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGCAGTGAAGGAGACATC...........................................................................	28	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------AAAAATGTGCAACGCAGTGAAGGAGA...............................................................................	28	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGCAGTGAAGGAG................................................................................	23	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGCAGTGAAGGAGA...............................................................................	24	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAAGCATGTCCGTCTG.....	22	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGAC..............................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTTGGTC-------AAAAATGTGCAACGCA.........................................................................................	29	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC-------AAAAATGTGCAACGCAGTGA.....................................................................................	25	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC-------AAAAATGTGCAACGCAGT.......................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GGTC-------AAAAATGTGCAACGC..........................................................................................	19	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------AAAAATGTGCAACGCAGTGAAGGAG................................................................................	27	20	0.05	1	0	0	0	0	1	0

droBip1

ATCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATAATATA--T-----------------------------------------GTAGTTTTCA-----------------GTT-----------------------------------------AGAAGT------TAGGCTGAAAAACGTTTCTTCCTT-----------TGATTTTAATACCCGGTACT-------TGTA--GAG-TACAAGGATATATTGTAGTCGTGT-------GAATGTATGAAACATAGAAAAGGCATTATCTCCGACCTCATAAAGTATATATATTCTTCATCAGCATCAACAGCCGAGTCGATAAAGCCACGTCTGTTTAC----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATATTTTTA-----------------------------A-------------------------TCAAGCTGTTT-------------AA-------G-----------------------------------------------------A--AC----------------------------T---TTTCATAAAATA--AAT---------------------------------------GCAAACG---------------------------------------------------AAACTTAAA-GGTAGCCGT------AAA-TCAAACAAC----------------------GTTTTTTTATACCCT------------TG-----------CAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GACGCCTGC-----------------------------C------------------------AT--------TCCAGTCATAATGAT----------------------------------------------------------------------------------------------TGC---TTTTACAATATT--------------------------------------------GCGACTG--------------------AGG----------------------------TGGGTTATTTGCAA-CCGT-------GT-GCCATT-----A--C--ACAGTCT-------TTTTTTTTATACCCT------------TGCA--GAG-G-AAAGGGTATTATAATTTTGGCC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGTAGAATCGGAATACGTCTGTACGTCTGT----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAGCTTCC-----------------------------A-----------------------------------A-------------AA-------A------------------------------------------------------------------------------------TGTTACATTCAAAATGT---------------------------------------------TCAGTTTTTA-----------------ATC----------------------------AGGGTCATTGGATT-CAGGGACCAAAAA-AATAAC-----A--T--TTT-----------TTGTTTTTATACCCT------------TGC---------AGAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATACCCTTT-----------------------------G-------------------------CCAGGATTTAT-------------AA-------A-----------------------------------------------------GATTTGCTAATGGA-AGAATATTTTATT-----------------------------------------------------------------------------------------ACTTTGAAAAAAAGACAATTC-----------------------------------------------------------TAA-----------TGATTATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATATTGTATTCATGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGACCTAGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGTGCGCGA-----------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTACACGAGTCTTTTTCTATTGTCAAAATGTATT-----------------------TTTTTGCTAAATTG---------------------------------------------------------------------TTGATTTTT--GATTCATTACACCCGTTACA-------CGTA--GAG-TAAAAGGGTACACTAGATTCGTCG-------GAAAGTATGTAACAAGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCACGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCAGT----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGCTATTT-----------------------------G-----------------------CAT--------TTTAAACACACAAAA----------------------------------------------------------------------------------------------ATC---TATAAGAAAATA--TCT--TCGAT--------------------------------------------------------ATGTTGTAAAAATGTAAAATC-----------AA-------------------------------------TA---------------------TTTTAATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCTGCAAA-------------------------------------------------CT------------CTT------------------------------------------------------------------------------------------------------------------TATTAGAATAT---------------------------------------------GCAAATT--------------------TTG------------TGGGC------------------------AAACAA------AGA-GCAAAT-----A--T--TTT-----------GTATAATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACGTTAAGA-----------------------------A-------------------------TCATATGTGGA-------------AA-------G-----------------------------------------------------GGAACTTTTGTTGACAAAATGCTAGAATTGT------T----TA---------------G------------------------------------TG----------------------------------------------TTGACGT-------------------------------------TC---------------------ATTTGTATATACCTGTTACT-------ACTA--GAG-TAAAAAGGTATACTAGATTTGTTG-------CAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCTTATAAAGTATATATATTCTTAATCAGGAT----AGCCGAGTAAAACTAACCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGGAT----AGCCGAGTAAAAC.....................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGCTAGAATTGT------T----TA---------------G------------------------------------TG----------------------------------------------TTGACGT-------------------------------------T...................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTAAAACTAACCATGTCCGTC.......	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCGTT...........................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCGT............................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCGTTTCC........................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCGTTT..........................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGC..............................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGTAAG---------------------------------------------------CTTTACAT---------------------------------------------------------------------------------------------------------------------------TATCAGGAAATA--CAT--ACAATGAG--------------------------------------------------------CTTTAA--------CTGAGCAATGTAAAAAAGAAGTCATTTACAT-------------------------------CCTT-----------ACATCATTATACCCGTTACT-------CGTC--GAG-TAAAAGGGTATACTAGATTCGGTG-------AAAAGTATGTAACAAGAAAAAGGAAGAGTTTCCGACTATATAAAGTGTATATATTATTGATCAGGATCAAAAGCCGAGTCGATCCAGCCATGTCCGTTTGT----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCAAA..................................	27	1	80.00	80	0	0	2	0	0	0	33	27	12	4	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGAAAAAGGAAGAGTT...........................................................................	25	1	30.00	30	0	0	0	4	0	0	0	2	7	10	7	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCAAAA.................................	28	1	21.00	21	0	0	0	1	0	0	11	8	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGAA.......................................................................................	25	1	19.00	19	0	0	0	0	0	0	6	2	8	2	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGAAAA.....................................................................................	27	1	18.00	18	0	0	0	0	0	0	6	4	6	2	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGAAA......................................................................................	26	1	13.00	13	0	0	0	0	0	0	2	4	5	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAAGAAAAAGGA.................................................................................	24	1	7.00	7	0	0	0	0	0	0	6	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGA........................................................................................	24	1	6.00	6	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAAGAAAAAGGAA................................................................................	25	1	4.00	4	0	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCA....................................	25	1	4.00	4	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCAA...................................	26	1	4.00	4	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAAGAAAAAGG..................................................................................	23	1	3.00	3	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGAAAAAGGAAGAGTTTC.........................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTG-------AAAAGTATGTAACAAGAAAA.....................................................................................	26	1	3.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAG.........................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGTGTATATATTATTGATCAGGA.......................................	28	1	3.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCAAAAGC...............................	30	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGAAAAAGGA.................................................................................	31	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTATTGATCAGGATCAAAAGC...............................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATTATTGATCAGGATCAAAA.................................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGG........................................	21	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATTATTGATCAGGATCAAAAG................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGAAAAAGGAAGAGTTA..........................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGGTG-------AA.......................................................................................................	26	8	1.38	11	0	0	0	0	0	0	5	2	0	3	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGA.......................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGAAAAAGGAAGAGTA...........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAGGAAGAGTT...........................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTG-------AAAAGTATGTAACAAGAAT......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAAGAAAAAGGAAGAGTT...........................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGGTG-------AAAAGTATGTAACAAGA........................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTG-------AAAAGTATGTAACAAGAA.......................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAAAAGCCGAGTCGATCCAGC.................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGATCAGGATCAAA..................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAAGAAAAAGGAAGA..............................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATTATTGATCAGGATCAAAAGC...............................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTGTATATATTATTGATCAGGA.......................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGAAAAA....................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGAAAAAGGAA................................................................................	32	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCCAGCCATGTCCGTT.......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGAAAAAGGAAGAGT............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCCAGCCATGTCCGTTTGT----	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCCAGCCATGTCCG.........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGAT......................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTATATATTATTGATCAGGATCAAAA.................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTAAAAAAGAAGTCATT................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTG-------AAAAGTATGTAACAAGAAAAAGGA.................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCAT...................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TC--GAG-TAAAAGGGTATACTAGATTCG...................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTATTGATCAGGATCAAAAG................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCCAGCCATGTCCGTTTGT----	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCCAGCCATGTCCGTTT......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACA...........................................................................................	21	7	0.57	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGGTG-------AAAAGTA..................................................................................................	26	7	0.57	4	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCCAGCCATGTCCGT........	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGGTG-------.........................................................................................................	24	8	0.50	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGGTG-------A........................................................................................................	25	8	0.50	4	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTTCCGACTATATAAAGTGTA........................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TACT-------CGTC--GAG-TAAAAGGGTA..............................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATTATTGATCAGGA.......................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCCAGCCATGTC...........	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCCAGCCATGTCCGT........	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTATTGATCAGGA.......................................	19	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAAAGCCGAGTCGATC.....................	23	9	0.22	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAGAGTTTC.........................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATA.....................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGGTG-------TT.......................................................................................................	26	19	0.16	3	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AG-TAAAAGGGTATACTAGATTCGGTG-------.........................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGGTG-------AAAAGTATGTA..............................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGATTCGGTG-------AAAAGTA..................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGGTG-------AAAAGTA..................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGGTG-------AAA......................................................................................................	27	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGGTG-------AAAAGT...................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGGTG-------AAAAG....................................................................................................	24	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGGTG-------AAAAG....................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGGTG-------AAA......................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAAAAGCCGAGTCGATC.....................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGG..................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAAAAGCCGAGTCGAT......................	23	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAAAGCCGAGTCGAT......................	22	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTG-------AAAAGTATGTAACAAGC........................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGGTG-------AAAAGTA..................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGGT.................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGGT.................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGGTG-------AAAAGTA..................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTG-------AAAAGTATGTAACAAGC........................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGG..................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAAAAGCCGAGTC.........................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTATTGATCAGGA.......................................	17	16	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAAAAGCCGA............................	20	16	0.06	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTATTGATCAGGATCAAT..................................	27	17	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGATCAGGATC.....................................	16	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ATTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGAATAACACTGT---------------------------------------------------------------GAAGTA----------------------------TGGGTTTCTTGCAA-CCGG-------AA-CCAAAT-----------TTT-----------ATATTGTTATACCCTTTACT-------CGTA--GAG-TAAAAGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAATCGCTTCCGACTATATAAAGTATATATATTCCTGATCAGGATCAATAGCCGAGTCTATCTAGCCATCTTC----------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCCTGATCAGGATCAATAGCCGA............................	26	5	0.20	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGG.........................................................................................	23	20	0.10	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTACT-------CGTA--GAG-TAAAAGGGT...............................................................................................................................	21	20	0.10	2	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAG..........................................................................................	22	20	0.05	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGCAGA.....................................................................................	25	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................ACT-------CGTA--GAG-TAAAAGGG................................................................................................................................	18	20	0.05	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGCAG......................................................................................	25	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGG.........................................................................................	22	20	0.05	1	0	1	0	0

droYak3

ATGCGATCC-----------------------------G-------------------------TTGTCATCAAA-------------AA-------G------------------------------------------------------------------------------------AGTTAATTAAAGAAAACA--AAT---TAATGAG--------------------------------------------------------C---------------AAGCAATATAAGAA-----------GAAAAATAT------AAA-TCTAAT-----A--A--------ATAAAAATTAGTTATTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAATTATATATATTCTTGATCAGGAACAACAGCCGAGTCGACTTGGCCATGTCCGTCTGT----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCGACCATATAAATTA..........................................................	27	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACCATATAAATT...........................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GCCATGTTC-----------------------------G-------------------------TCAGACCCTCT-------------AA-------T-------------ATTCATTTAGAAAATGTAAATTAATAATTGCTGTGCCTTGGGAAT--TTTAAGTCCTAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGATAT---CGCTTGCAT-----------TCATTTTTATACCCGTTACT-------CGTA--GAG-TAAAAGGGTATACTAGATACGTTG-------AAACGTATGTAAGAGGCAGAAGGAAGCGTTTCCAAACATTTAAAGTATATATATTCTTGATCATGATCAATAGCCGAGTCGAACTGGCCGTGTCCGTATGT----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_9695

scaffold_12958:974731-974881 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

TACGACAGGCAGTCCGAGATGTTCTAGATGAAAGTCTTATGTACAGTTTACACTCAATAAACCTTCGGTCTTTCGATTATACATATACAAATTAATATGGGACTTGGGTAACTTTTACCTATATTCCCATGTAACATAAACACGTTTAGGTTTACATACATTGTCCGTCTTCCTTCATAGAGGCTGGGGTATTTCATATATATAAGAACTAGTCGTAGTTATCGGCTCTGCTATATCGGTACAGGCAGACG *****************************************************************************......(((((..((((((........)))))).)))))...........************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060684 140x9_0-2h_embryos_total	SRR060676 9xArg_ovaries_total	SRR060678 9x140_testes_total	SRR060677 Argx9_ovaries_total	SRR060686 Argx9_0-2h_embryos_total	SRR060674 9x140_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060681 Argx9_testes_total	SRR060680 9xArg_testes_total	SRR060679 140x9_testes_total	SRR060687 9_0-2h_embryos_total	M047 female body	SRR060685 9xArg_0-2h_embryos_total	SRR060688 160_ovaries_total	SRR060655 9x160_testes_total	SRR060683 160_testes_total	V116 male body	SRR060659 Argentina_testes_total	M028 head	SRR060675 140x9_ovaries_total	M061 embryo	SRR060670 9_testes_total	SRR060673 9_ovaries_total
....................................................................................................................................AACATAAACACGTTTAGGTTTACAT..............................................................................................	25	0	4	4.50	18	3	3	1	3	2	2	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGTAACATAAACACGTTTAGGTTTACAT..............................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTAACATAAACACGTTCAGGTTTACAT..............................................................................................	27	1	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TACATAAACACGTTTAGGTTTACAT..............................................................................................	25	1	4	0.50	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TAACATAAACACGTTTAGGTTTACAT..............................................................................................	26	0	4	0.50	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AACATAAACACGCTTAGGTTTACAT..............................................................................................	25	1	5	0.40	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ATAAACACGTTTAGGTTTACAT..............................................................................................	22	0	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AACATAAAGACGTTTAGGTTTACAT..............................................................................................	25	1	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ACATAAACACGTTTAGGTTTACAT..............................................................................................	24	0	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CCGTCTTCCTTCATAGAGGCTGGGGT.............................................................	26	0	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0
...................................................................................................................................TAACACAAACACGTTTAGGTTTACAT..............................................................................................	26	1	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CTTCCTTCATAGAGGCTGGGGT.............................................................	22	0	20	0.20	4	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGGGTATTTCATATATATAAGAACTAGT......................................	28	0	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ACACGTTTAGGTTTACATACAT..........................................................................................	22	0	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................ACACGTTTAGGTTTAAAAACATTGT.......................................................................................	25	2	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AACACGTTTAGGTTTACAT..............................................................................................	19	0	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................TCCTTCATAGAGGCTGGGGT.............................................................	20	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATAGAGGCTGGGGTATTTCAT......................................................	21	0	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................CTTCATAGAGGCTGGGGT.............................................................	18	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
................................................................................................................................................................................ATAGAGGCTGGGGTATTTCATATA...................................................	24	0	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTGGGGTATTTCATATATATAAGAACT.........................................	27	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................CTTCATAGAGGCTGGGGTATT..........................................................	21	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0
..............................................................................................................................................CGTTTAGGGTTACATACAATGTCCGT...................................................................................	26	2	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AAGGTAGTCCGAGATGTTG...................................................................................................................................................................................................................................	19	3	15	0.07	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TGGGACTTGGGTAACTTTTACATTTAT...............................................................................................................................	27	2	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTCCTTCATAGAGGCTGGGGTAT...........................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................TAGGTTTACATACATTGTCCGTCTT................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CCGTCTTCCTTCATAGAGGCTGGGGTAT...........................................................	28	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CCGTCTTCCTTCATAGAGGCT..................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GGCTGGGGTATTTCATATATATAAG.............................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TAGGTTTACATACATTGTCCGTC..................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGGGTATTTCATATATATAAGAACTAG.......................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTCCTTCATAGAGGCTGGGGTATTTCAT......................................................	28	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATTGTCCGTCTTCCTTCATAGAGGCT..................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAGGCTGGGGTATTTCATATA...................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................CTTCCTTCATAGAGGCTGGGGTAT...........................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TATAAGAACTAGTCGTAGTTATC............................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TTGTCCGTCTTCCTTCATAGA......................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACATTGTCCGTCTTCCTTCATAGAGGCT..................................................................	28	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGGGTATTTCATATATATAAGAA...........................................	24	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TATATAAGAACTAGTCGTAGTTAT.............................	24	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCTTCCTTCATAGAGGCTGGGGT.............................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................TCATAGAGGCTGGGGTATTTCATAT....................................................	25	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGAGGCTGGGGTATTTCATATATATAAG.............................................	28	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATATATAAGAACTAGTCGT...................................	19	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTGGGGTATTTCATATATATAAGAAC..........................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATAGAGGCTGGGGTATTTCATATATA.................................................	26	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CATTGTCCGTCTTCCTTCATAGAGGCTC.................................................................	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CTTCATAGAGGCTGGGGTATTTCATA.....................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TATATATAAGAACTAGTCGTAGTT...............................	24	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CTTCATAGAGGCTGGGGTATTTCATAT....................................................	27	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTCCTTCATAGAGGCTGGGGT.............................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGTCCGTCTTCCTTCATAGAGGC...................................................................	23	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTAGGTTTACATACATTGTCCG....................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCATAGAGGCTGGGGTATTTCATATATA.................................................	28	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................TGGGACTTGGGTAACTTTTACC....................................................................................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0