dvi_9694

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12958:974260-974510 -	dvi_9694	GATA-TCCTGTTTTTTGAGCAATTTTGGTAAATAA-----------------------------------------------------------------CAAGAGCTAGAGTCACGAAACTTGACATAT-----------------------------------------------------------------------------------------------------AGCTTCTA--AAATA-----------------------GAATATATATATATATGCATTTGATGTTGGAAGAAGAGGGATCAGGGTATCC----CCTAGTCGGGAGCTCCCGACTAGAACCT-CTTACTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAT---A--CTAT-ATTTAACAAACATAT----TTT------AT-TTA-----------------------------AGATGGGTCAAAAAGATAACAGCCCCGCTCTAGATCGTGCCATTGATCAAAT
droMoj3	scaffold_6500:30403973-30404226 +		GAAA-ACCAGTTATAAAATTATATCTCCTACATCT-----------------------------------------------------------------TTAGAGCTGCAGTCTCCAAATTTTAAATGTATAGTGTATAGTGCATTTTATACAGTTTTGGTCTT----TGAAA----------AATAGCTAT--------------------------------------------------------------------------------------------------------TG-CTCGAAGGGTTCAGGGGGTCT----CGTAGTCGAGCACACTCGATTAGAGCTTTCTTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------ACTTG---------------------------T----TTT------ATTTTTAAAATCATTAAAAACACTTTAAAA--ATTGCTATAAACTTTA------------AAAAGCCTGTTGTGCCAATAATTTAGT
droGri2	scaffold_14906:9269714-9269950 +		GATT-AATATATAC-----TATATCTCTTAC-TGATCAACTCGAAATATTTTATTGATGGCTAAGAAACGTAGATTTTGCTAACTAAAATTTATCTTCCTATTGAACTACTATCTGCAAA-------------------------------------------------------CTTAATATGTATTTAAATT--------------------------------------------------------------------------------------------------------------CTGGGTTCAGGGTATCT----CCACGTCGAGCTCTCTCGACTAGAGCATGCTAACTT---------------------------------------------------------------------------------------------------------------------------------------------------GATATTTTTTG--CTC----CCTTTCAACACAAACT----TAATTTGA------------------------------------------AGAAAAATAGC-----------------------------AAC
droWil2	scf2_1100000004954:5007358-5007549 -		TATC-TCAAAAACTA-------------------------------------------------------------------------------------TTCCAGCTAGAGACACCATATTTGGTATGTATATTTGCTTAGTAAATGCA---------------------CACATTTTGTATGTATAAAAATT----------------------------------------------------------------------------------------------------------------------TTGCCACGC----CCTTTTCCG---------------------------------------------------------------------------------------------------------------------------CCCCCGTAATTTCAAAAACTTGATTATCTCCCGT-----------------ATTTAAT--AC--TAA-----TATTTAGCAAAATACC---AAATTTGA-TCA-----------------------------AAATCG--------------------------------------GACAAAAA
dp5	4_group4:4030074-4030150 +		GGCA-TCCACAATTTC-GACGATACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGCAA
droPer2	scaffold_3:980503-980573 -		TATT-TAAAAAATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTC-----------------------------AGATAAGTCAAAAAGACAACAGCCCCGGACTGGTTCGTGCGATTGACCAAAT
droAna3	scaffold_13266:19139888-19140010 +		TACA-TTCATTGCTCG-TACAG-------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAATATTATGGA----------------------------TACCGACAGCAAGTCATTAAAAGTAAAAGTATTTCTTTAAATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------AA--ATATGTAAATATATAAAAACATT------------TGCTTT------GCAAAGGA
droBip1	scf7180000391726:12795-12982 -		GGTG-TTTTTAGGG---------------------------------------------------------------------------------------------------------------------------------------------TTTTTAGGCATTTTTGCAGATTTATTTTGGAAAATAACTTTGGGCGGAGCCC------------------------------------------------------------------------------------------------------AAGTTGATATAC----CCTAGCAGTT-AAAACCGGATATATATCGCAAAC---ATCGGA--------------------------------------------------------------------------------------TAT-----------------------------ACATAGTTGGACGATCCTTATGA------------GAA----TC---------------------------TCA-----------------------------CAATAAAACCAATTAATTTCAATACAATAT--------------CTAAAAAA
droKik1	scf7180000301464:13297-13405 -		AAAA-TTACAACTTGG--------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTATCAA----------------------------CATTTATTATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTTTAAATGTTTAAATTTAA---------------------------------------------------------------------------------------------------------------------------------CATTAA-TAAT----------------------AAATT---AATATATATATAAGCTTATTTT-----------------ATTTTTCTAGAA
droFic1	scf7180000453445:2751-2820 +		AACA-CATTTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT-----------------------------AGATGAGTCAAAAAGATAATAGCCCTGGACTTTCCAGAGCGATTGACCAAAT
droEle1	scf7180000490380:58614-58717 +		CTCG-TACCCGTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGT--GTATTTTAAATTTTTCTGA----------------------------------------------------------------------------------------------------------------------------------AA-----ACCAT-T--------------T----TT----------TTC-----------------------------AGATGAGTCAAAAAGATAACGGCCCCGGACTTACTAGAGCAATTGATCAAAT
droRho1	scf7180000769531:9157-9314 +		AGCTGTGGCCACAG---------------------------------------------------------------------------------------------------------------------------------------------TTTTGATGCTATTATGAAAATTATTATAATAATAT---------------------------------------------------------------------------------------------ATTTATATTAAGTTGT-TTAGCTGAGGAACGGGTATCT----AATAGTCGCG-GCACTCGACTATATCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGTATTG--TAA----TC---------------TTT------AATTTA-----------------------------AAATAAA----------------------------------------CCAAA
droBia1	scf7180000302292:1092879-1093099 +		GAAA-TATACACTTTA-CGCACTGTGCGTTATTGGAAGACCCTTCATATTT----GATTTTTAAGG--------------------------GCATTATAATTTTTTTAT-TC---------------------------------------------------------------ATAATTTGAATATGAA---------TATCTG------------------------------------------------------------------------------------------------------AAATGGGTATCT----GATAGTCGAA-ACACTCGACTATCTCTTTCTACC-GGTTTATT--------------------------------------------------------------------------------------TAT-----------------------------ACATCTTTTAATATTTT---------------------------------------------TAATGGGT-TTA-----------------------------AAATACTTATAAAAGTCAGAAGTACCG-----------------CTCTGTAT
droTak1	scf7180000415385:135625-135898 -		AAAT-TTCAATATTTC-GG---------AAAAGTAAAAATGC------------------------------------------------------------------AG---------------------------------------------TTTTAAGGTGTTTATCAA----------------------------TACCTATCG---------AAATGTAGAAGAAATTTTTTAAATCGGACCATAAGTTAAAAAGTTACGGCGGAT-----------CAAAGTTTTTATCCT-TTAGCTGAGTAACGGGTATCT----GATAGTCGGG-GCACCCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAT-----TTAT-TTTTTATCCAGCGTAATTTA---AAATTAT-AAAT-----------------------------GAATTAAACAAAAAAATAGCAACGCCATAT-----CTTGGCTTCTGTCAAAT
droEug1	scf7180000409179:11985-12130 +		GCTG-CGTCAATTTTT----------------------------------------------AAAT--------------------------ATATTAAAATTGAATTAA-ATATATTAA-------------------------------------------------------ATTTATAT----------------------------------------------------------------------------------------------------ATAAATATATTATTGG-GTAAGACAGTCACTGCTATCTTATTTATAGTCGTG-GGGCTCGACTATAGCGCTTCTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GATTTAT------------------------------GTT------ATGTTT---------------------------------------------------------------------------------
dm3	chr3L:23322449-23322565 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-TAACGCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------CTTTTA-----ATCAT-A--------------T----TTT------ACGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT
droSim2	2l:21853213-21853329 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-TAACTCGACTATAGCGTTCTTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTA-----ACCAT-A--------------T----TTT------ACGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT
droSec2	scaffold_41:210211-210327 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----CATAGTCGGG-TAACTCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTA-----ACCAT-A--------------T----TAT------ACGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT
droYak3	2R:755936-756158 -		GAAG-ACTCTCCTTCG-C--ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA-CTAGCTGAGTAACGGGTATCA----GATAGTCGGG-GAACTCGACTATTGCGTTTTTTCTTGTTTATTAATAAGTATGTTAGGTAACATTTTTCTATACTGATTGGGTGTTTAAGTTCAAATTCTGCATTGGAGTTTTGCAGTCTTCCTCCCAC---TCCTAGTACCCC------------------------------ATTTTT---GTTTAAA---A--ATGG-----------------------------------------------------------------------------------------------ATTTAGTGACAATATTTTATT
droEre2	scaffold_4784:22830564-22830645 +		TTAT-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------TTTTTA-----ATCAT-A--------------T----TTT------ATGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GATA-TCCTGTTTTTTGAGCAATTTTGGTAAATAA-----------------------------------------------------------------CAAGAGCTAGAGTCACGAAACTTGACATAT-----------------------------------------------------------------------------------------------------AGCTTCTA--AAATA-----------------------GAATATATATATATATGCATTTGATGTTGGAAGAAGAGGGATCAGGGTATCC----CCTAGTCGGGAGCTCCCGACTAGAACCT-CTTACTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAT---A--CTAT-ATTTAACAAACATAT----TTT------AT-TTA-----------------------------AGATGGGTCAAAAAGATAACAGCCCCGCTCTAGATCGTGCCATTGATCAAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGATAACAGCCCCGCTCTA....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGATAACAGCCCCGCTCTAG...................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAGATCGTGCCATT........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TATATATGCATTTGATGTTGGAAG...................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TGGAAGAAGAGGGATCAGGGTATCC----A...........................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TAGAGTCACGAAACTTGACATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AAGAGCTAGAGTCACGAAACTTGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................TTTTGGTAAATAA-----------------------------------------------------------------CAAGAGCTAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TA-TCCTGTTTTTTGAGCAATTTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTTGGTAAATAA-----------------------------------------------------------------CAAGAGCTAGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATGCATTTGATGTTGGAAGAAGAGGG............................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................GCATTTGATGTTGGAAGAAGA...............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TTTGATGTTGGAAGAAGAGG.............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TATATATATATGCATTTGATGTTGGAA....................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CCGACTAGAACCT-CTTACTT---------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAATAA-----------------------------------------------------------------CAAGAGCTAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................TTGACATAT-----------------------------------------------------------------------------------------------------AGCTTCTA--AAATA-----------------------GAA.................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATCC----CCTAGTCGGGAGCTCCCGA.........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TATATATATATATGCATTTGATGT.........................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GCTCCCGACTAGAACCT-CTTACT.........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................TTTTGGTAAATAA-----------------------------------------------------------------CAAGAGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TATATGCATTTGATGTTGGAAGAAGA...............................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAAA-ACCAGTTATAAAATTATATCTCCTACATCT-----------------------------------------------------------------TTAGAGCTGCAGTCTCCAAATTTTAAATGTATAGTGTATAGTGCATTTTATACAGTTTTGGTCTT----TGAAA----------AATAGCTAT--------------------------------------------------------------------------------------------------------TG-CTCGAAGGGTTCAGGGGGTCT----CGTAGTCGAGCACACTCGATTAGAGCTTTCTTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------ACTTG---------------------------T----TTT------ATTTTTAAAATCATTAAAAACACTTTAAAA--ATTGCTATAAACTTTA------------AAAAGCCTGTTGTGCCAATAATTTAGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA------------AAAAGCCTGTTGTGCCAATAAT.....	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................TACAGTTTTGGTCTT----TGAAA----------AATAGCTAT--------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GTCT----CGTAGTCGAGCACACTCGATT.......................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TCGATTAGAGCTTTCTTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------ACTTG---------------------------.....................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TG-CTCGAAGGGTTCAGGGGGTCT----............................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTCAGGGGGTCT----CGTAGTCGAG..................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTTCAGGGGGTCT----CGTAGTCGAGC.................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0
........................................................................................................................................................................................AATAGCTAT--------------------------------------------------------------------------------------------------------TG-CTCGAAGGGT...........................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3
.........................................................................................................................................................................................ATAGCTAT--------------------------------------------------------------------------------------------------------TG-CTCGAAGGGTTCAGGG.....................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.....ACCAGTTATAAAATTATATCTCCTACATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	14	0.07	1	1	0	0	0	0	0
.....ACCAGTTATAAAATTATATCTCCTACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	1	0	0	0	0	0
....................ATATCTCCTACATCT-----------------------------------------------------------------TTAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....................TATCTCCTACATCT-----------------------------------------------------------------TTAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
............ATAAAATTATATCTCCTACATCT-----------------------------------------------------------------TTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................AGCTAT--------------------------------------------------------------------------------------------------------TG-CTCGAAGGGTTCAGGGG....................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................ATTATATCTCCTACATCT-----------------------------------------------------------------TTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......CAGTTATAAAATTATATCTCCTACATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0

droGri2

GATT-AATATATAC-----TATATCTCTTAC-TGATCAACTCGAAATATTTTATTGATGGCTAAGAAACGTAGATTTTGCTAACTAAAATTTATCTTCCTATTGAACTACTATCTGCAAA-------------------------------------------------------CTTAATATGTATTTAAATT--------------------------------------------------------------------------------------------------------------CTGGGTTCAGGGTATCT----CCACGTCGAGCTCTCTCGACTAGAGCATGCTAACTT---------------------------------------------------------------------------------------------------------------------------------------------------GATATTTTTTG--CTC----CCTTTCAACACAAACT----TAATTTGA------------------------------------------AGAAAAATAGC-----------------------------AAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TATC-TCAAAAACTA-------------------------------------------------------------------------------------TTCCAGCTAGAGACACCATATTTGGTATGTATATTTGCTTAGTAAATGCA---------------------CACATTTTGTATGTATAAAAATT----------------------------------------------------------------------------------------------------------------------TTGCCACGC----CCTTTTCCG---------------------------------------------------------------------------------------------------------------------------CCCCCGTAATTTCAAAAACTTGATTATCTCCCGT-----------------ATTTAAT--AC--TAA-----TATTTAGCAAAATACC---AAATTTGA-TCA-----------------------------AAATCG--------------------------------------GACAAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAAAACTTGATTATCTCCCG.......................................................................................................................................................	27	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TCCG---------------------------------------------------------------------------------------------------------------------------CCCCCGTAATTTCAAAAACTTGAT................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------TTGCCACGC----CCTTTTCCG---------------------------------------------------------------------------------------------------------------------------CCC.....................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................TATAAAAATT----------------------------------------------------------------------------------------------------------------------TTGCCACGC----CC..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAACTTGATTATCTCCC........................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............CTA-------------------------------------------------------------------------------------TTCCAGCTAGAGACACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................TCCG---------------------------------------------------------------------------------------------------------------------------CCCCCGTAATTTCAAAAACTTGA.................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.................................................................................................................................TATATTTGCTTAGTAAATGCA---------------------CACATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAAACTTGATTATCTCCCGT-----------------AT...................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.....TCAAAAACTA-------------------------------------------------------------------------------------TTCCAGCTAGAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0

dp5

GGCA-TCCACAATTTC-GACGATACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......CACAATTTC-GACGATACGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.15	23	0	22	0	0	0	0	0	0	1	0
.......................................CGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.60	12	0	0	0	0	0	0	8	4	0	0
....................................AAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.60	12	0	12	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGC..	23	20	0.55	11	0	11	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGCA.	24	20	0.50	10	0	10	0	0	0	0	0	0	0	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.45	9	0	8	1	0	0	0	0	0	0	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.40	8	0	5	3	0	0	0	0	0	0	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	3	3	0	0	0	1	0	0	0
........................................GC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACT............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	3	0	0	0	0	2	0	0	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................GACGATACGAGAAAACAAAAAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.....................................AACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...................CGATACGAGAAAACAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	1	0
....................................AAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGTAGAAGATGACTATATCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTG...	22	20	0.15	3	0	0	0	0	1	0	0	0	2	0
.........................................C------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACT............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	3	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	1	2	0	0	0	0	0	0	0
.............TTC-GACGATACGAGAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	1	0	0
.GCA-TCCACAATTTC-GACGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................ACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......CACAATTTC-GACGATACGAGAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.........CAATTTC-GACGATACGAGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
....................................AAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...............................ACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...A-TCCACAATTTC-GACGATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..................................AAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......CCACAATTTC-GACGATACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.....................................AACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACT............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	1	0	0	1	0	0
......................................ACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................AGATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTG...	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATCGTAGAAGATGACTATAT........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG.....	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.GCA-TCCACAATTTC-GACGATACGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................GAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................TCGTAGAAGATGACTATATCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.............................AAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................GATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT....	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......CACAATTTC-GACGATACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........ATTTC-GACGATACGAGAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................C------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACTATATCT......................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................CGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................GTAGAAGATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG.....	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................CGTAGAAGATGACTATATCT......................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................TCGTAGAAGATGACTATATCTTCT...................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................AAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................CAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................ACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................GC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACTA...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................TGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGCA.	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................ATACGAGAAAACAAAAAACGC------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................A------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACTATAT........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................AAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................ACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................TACGAGAAAACAAAAAACGC------------------------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................ATACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................GC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------ATCGTAGAAGATGACTATATCT......................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................GATACGAGAAAACAAAAAACGC------------------------------------------------------------------AGA------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGATGACTATATCTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGC..	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TATT-TAAAAAATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTC-----------------------------AGATAAGTCAAAAAGACAACAGCCCCGGACTGGTTCGTGCGATTGACCAAAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACAGCCCCGGACTGGTTC................	23	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCCCGGACTGGTTCGTGC............	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCGGACTGGTTCGTGC............	19	1	1.00	1	1	0	0	0	0	0

droAna3

TACA-TTCATTGCTCG-TACAG-------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAATATTATGGA----------------------------TACCGACAGCAAGTCATTAAAAGTAAAAGTATTTCTTTAAATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------AA--ATATGTAAATATATAAAAACATT------------TGCTTT------GCAAAGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GGTG-TTTTTAGGG---------------------------------------------------------------------------------------------------------------------------------------------TTTTTAGGCATTTTTGCAGATTTATTTTGGAAAATAACTTTGGGCGGAGCCC------------------------------------------------------------------------------------------------------AAGTTGATATAC----CCTAGCAGTT-AAAACCGGATATATATCGCAAAC---ATCGGA--------------------------------------------------------------------------------------TAT-----------------------------ACATAGTTGGACGATCCTTATGA------------GAA----TC---------------------------TCA-----------------------------CAATAAAACCAATTAATTTCAATACAATAT--------------CTAAAAAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAA-TTACAACTTGG--------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTATCAA----------------------------CATTTATTATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTTTAAATGTTTAAATTTAA---------------------------------------------------------------------------------------------------------------------------------CATTAA-TAAT----------------------AAATT---AATATATATATAAGCTTATTTT-----------------ATTTTTCTAGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACA-CATTTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT-----------------------------AGATGAGTCAAAAAGATAATAGCCCTGGACTTTCCAGAGCGATTGACCAAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTCG-TACCCGTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGT--GTATTTTAAATTTTTCTGA----------------------------------------------------------------------------------------------------------------------------------AA-----ACCAT-T--------------T----TT----------TTC-----------------------------AGATGAGTCAAAAAGATAACGGCCCCGGACTTACTAGAGCAATTGATCAAAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCTGTGGCCACAG---------------------------------------------------------------------------------------------------------------------------------------------TTTTGATGCTATTATGAAAATTATTATAATAATAT---------------------------------------------------------------------------------------------ATTTATATTAAGTTGT-TTAGCTGAGGAACGGGTATCT----AATAGTCGCG-GCACTCGACTATATCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGTATTG--TAA----TC---------------TTT------AATTTA-----------------------------AAATAAA----------------------------------------CCAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAA-TATACACTTTA-CGCACTGTGCGTTATTGGAAGACCCTTCATATTT----GATTTTTAAGG--------------------------GCATTATAATTTTTTTAT-TC---------------------------------------------------------------ATAATTTGAATATGAA---------TATCTG------------------------------------------------------------------------------------------------------AAATGGGTATCT----GATAGTCGAA-ACACTCGACTATCTCTTTCTACC-GGTTTATT--------------------------------------------------------------------------------------TAT-----------------------------ACATCTTTTAATATTTT---------------------------------------------TAATGGGT-TTA-----------------------------AAATACTTATAAAAGTCAGAAGTACCG-----------------CTCTGTAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAT-TTCAATATTTC-GG---------AAAAGTAAAAATGC------------------------------------------------------------------AG---------------------------------------------TTTTAAGGTGTTTATCAA----------------------------TACCTATCG---------AAATGTAGAAGAAATTTTTTAAATCGGACCATAAGTTAAAAAGTTACGGCGGAT-----------CAAAGTTTTTATCCT-TTAGCTGAGTAACGGGTATCT----GATAGTCGGG-GCACCCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAT-----TTAT-TTTTTATCCAGCGTAATTTA---AAATTAT-AAAT-----------------------------GAATTAAACAAAAAAATAGCAACGCCATAT-----CTTGGCTTCTGTCAAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCTG-CGTCAATTTTT----------------------------------------------AAAT--------------------------ATATTAAAATTGAATTAA-ATATATTAA-------------------------------------------------------ATTTATAT----------------------------------------------------------------------------------------------------ATAAATATATTATTGG-GTAAGACAGTCACTGCTATCTTATTTATAGTCGTG-GGGCTCGACTATAGCGCTTCTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GATTTAT------------------------------GTT------ATGTTT---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-TAACGCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------CTTTTA-----ATCAT-A--------------T----TTT------ACGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGCCCAGGACTCTCTCGAGC............	24	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCTCTCGAGCGATTGAT.....	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCCCAGGACTCTCTCGAGCGATTG.......	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGGACTCTCTCGAGC............	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCTCTCGAGCGATTGATC....	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTA-----ATCAT-A--------------T----TTT------ACGTTT-----------------------------AG..................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGGACTCTCTCGAGCGAT.........	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAAAGATAACAGCCCAGGAC......................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGTATCT----GATAGTCGGG-TAAC.............................................................................................................................................................................................................................................................................................................	21	5	1.60	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-TAAC.............................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-.................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATCT----GATAGTCGGG-TAA..............................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGACTATAGCGTTCTCTCT.........................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-TAACTCGACTATAGCGTTCTTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTA-----ACCAT-A--------------T----TTT------ACGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCGTTCTTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GT...................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGACTCTCTCGAGCGATTGATC....	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTA-----ACCAT-A--------------T----TTT------ACGTTT-----------------------------AGA.................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCTCTCGAGCGATTGA......	21	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTT------ACGTTT-----------------------------AGATGAGTCAAAAAGA....................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGGG-TAACTCGACTATAG...................................................................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-TAA..............................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATCT----GATAGTCGGG-TAACTCGA.........................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----GATAGTCGGG-.................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATCT----GATAGTCGGG-TAACTCGAT........................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATCT----CATAGTCGGG-TAACTCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GTTTTA-----ACCAT-A--------------T----TAT------ACGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGACTCTCTCGAGCGAT.........	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCAAAAAGATAACAGC.............................	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGACTCTCTCGAGCGATT........	22	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------G....................................................................................................................................	22	15	0.13	2	0	1	0	1
...................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------G....................................................................................................................................	23	9	0.11	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GT...................................................................................................................................	23	15	0.07	1	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................CGACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GT...................................................................................................................................	22	16	0.06	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................GACTATAGCGTTCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------GT...................................................................................................................................	21	17	0.06	1	0	0	0	1

droYak3

GAAG-ACTCTCCTTCG-C--ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA-CTAGCTGAGTAACGGGTATCA----GATAGTCGGG-GAACTCGACTATTGCGTTTTTTCTTGTTTATTAATAAGTATGTTAGGTAACATTTTTCTATACTGATTGGGTGTTTAAGTTCAAATTCTGCATTGGAGTTTTGCAGTCTTCCTCCCAC---TCCTAGTACCCC------------------------------ATTTTT---GTTTAAA---A--ATGG-----------------------------------------------------------------------------------------------ATTTAGTGACAATATTTTATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................................................................................TAACGGGTATCA----GATAGTCGGG-GAAC.............................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCA----GATAGTCGGG-GAACTCGACTATT....................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TTAT-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------TTTTTA-----ATCAT-A--------------T----TTT------ATGTTT-----------------------------AGATGAGTCAAAAAGATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAGATAACAGCCCAGGA.......................	21	1	1.00	1	0	0	0	0	0	1	0

-25.6	-25.5	-25.5	-25.4

dvi_9694

scaffold_12958:974310-974460 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

CTATAGGACAAAAAACTCGTTAAAACCATTTATTGTTCTCGATCTCAGTGCTTTGAACTGTATATCGAAGATTTTATCTTATATATATATATACGTAAACTACAACCTTCTTCTCCCTAGTCCCATAGGGGATCAGCCCTCGAGGGCTGATCTTGGAGAATGAACAAAATATGATATAAATTGTTTGTATAAAATAAATTCTACCCAGTTTTTCTATTGTCGGGGCGAGATCTAGCACGGTAACTAGTTTA *************************************************************************************....................((..((((((..............(((((((((....)))))))))..))))))..))************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M027 male body	SRR060684 140x9_0-2h_embryos_total	SRR060678 9x140_testes_total	SRR060681 Argx9_testes_total	SRR060675 140x9_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060670 9_testes_total	M047 female body	SRR060679 140x9_testes_total	SRR060674 9x140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060689 160x9_testes_total	SRR060655 9x160_testes_total	SRR060657 140_testes_total	SRR060680 9xArg_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060658 140_ovaries_total	SRR060660 Argentina_ovaries_total	SRR060667 160_females_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060682 9x140_0-2h_embryos_total	SRR060683 160_testes_total	SRR060688 160_ovaries_total
.......................................CGATCTCAGTGCTTTGAACTGTATAT..........................................................................................................................................................................................	26	0	12	1.75	21	0	6	2	0	3	3	0	1	1	2	2	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CTAGTCCCATAGGGGATCAGCC.................................................................................................................	22	0	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATCTCAGTGCTTTGAACTGTATAT..........................................................................................................................................................................................	24	0	13	0.23	3	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CGGGTCGAGATCTAGCAG.............	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAGTGCTTTGAACTGTATATC.........................................................................................................................................................................................	21	0	16	0.19	3	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GATCTCAGTGCTTTGAACTGTATAT..........................................................................................................................................................................................	25	0	13	0.15	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CTCAGTGCTTTGAACTGTATAT..........................................................................................................................................................................................	22	0	14	0.14	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................CTTTGAACTGTATATCGAAGATT..................................................................................................................................................................................	23	0	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................TCTCGATCTCAGTGCTTTGAACTGT..............................................................................................................................................................................................	25	0	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GTCTGGGCGATGTCTAGCA..............	19	3	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TCTTGGAGAATGAACAAAATA................................................................................	21	0	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................TCGATCTCAGTGCTTTGAACTGTATAT..........................................................................................................................................................................................	27	0	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................AAAATAAAGTCGACCCAG...........................................	18	2	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................TGCTTTGAACTGTATATCGAAG.....................................................................................................................................................................................	22	0	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATAGGACAAAAAACTCGTTAAAACC................................................................................................................................................................................................................................	25	0	17	0.06	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GGACAAAAAACTCGTTAAAACCATTT............................................................................................................................................................................................................................	26	0	17	0.06	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACGTAAACTACAACCTTCTT...........................................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................AAAACCATTTATTGTTCTCG..................................................................................................................................................................................................................	20	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCGAGGGCTGATCTTGGAGAATGAACA.....................................................................................	27	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GCCCTCGAGGGCTGATCTTGG...............................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................GGGGATCAGCCCTCGAGGGCT.......................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................AAACCATTTATTGTTCTCGATCT..............................................................................................................................................................................................................	23	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTTAAAACCATTTATTGTTCTCGATC...............................................................................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................CTCGAGGGCTGATCTTGGAGAAT..........................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................AGCCCTCGAGGGCTGATCTTGGAGAAT..........................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................TCCCATAGGGGATCAGCCCTCGAGGGC........................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................TCGAGGGCTGATCTTGGAGA............................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................CCTGCTTTGAACTGTATAT..........................................................................................................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CCATAGGGGATCAGCCCTCGAGGGCT.......................................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TAAAACCATTTATTGTTCTCGATC...............................................................................................................................................................................................................	24	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACGTAAACTACAACCTTCTTCTC........................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TATATACGTAAACTACAACCTTCTTCT.........................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0