dvi_9653

TGGCATACTTAAATTAACAACAATAGGATTTACAACACAACTACATTTATTTTATTCTTAAGTTATTTGTGACGTGGCAAAAGCAACTTACAAGGTTTGACTTGGATTTTTGATAAATAACAAGCTCGAAGTGACTTCGATTAACAAATGTTACCAAAAGAATTTACGATCGTCGTACATAAACTATTTAACGGCAATGTCGTCAAATTCACAGAACGTGCTCTTGACAGCGTTGGTTGTAGGACATTGCC ****************************************************************************......((..............((((...((((.(((.........((((((...))))))))).)))).....))))..............))*****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060677 Argx9_ovaries_total	V116 male body	SRR060656 9x160_ovaries_total	M027 male body	SRR060660 Argentina_ovaries_total	SRR060681 Argx9_testes_total	SRR060658 140_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060659 Argentina_testes_total	SRR060661 160x9_0-2h_embryos_total	SRR060667 160_females_carcasses_total
...........................................................................................................................................................................................................................GCCCTTGAGAGCGTTGGTT.............	19	2	13	0.38	5	0	0	2	0	0	0	2	0	0	1	0	0
.............................................................................................GGTTTTACTTGGATTTGTGA..........................................................................................................................................	20	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CTCGAAGCGGCTTCGATT.............................................................................................................	18	2	10	0.20	2	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CACAGAACGTGCTCTTGACAGCGT..................	24	0	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCACAGAACGTGCTCTTGACAGCGT..................	25	0	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCACAGAACGTGCTCTTGA........................	19	0	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................AGAAGCAGCTTACGAGGTTT.........................................................................................................................................................	20	3	13	0.15	2	0	0	1	0	0	0	0	0	0	0	1	0
............................................................................................................................CTCGAAGCGGCTTCGATTGA...........................................................................................................	20	3	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................CCCTTGAGAGCGTTGGTT.............	18	2	14	0.14	2	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................CATCTTACCAGGTCTGACT.....................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................GTGATTTCGATTTAGAAATGT....................................................................................................	21	3	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TATTGTTACCAAGAGAATT.......................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12954:278579-278829 -	dvi_9653	ACCGTATGAATTTAATT----------GTTGTTATCCTAAA-----TGTTGTGTTGATGTAAATAAAATAAGAATTCAATAAAC-ACTGCACCGTTTTCGTTGAATGTTCCAAACTG-AACCTAAAAACTA---TTTATTGTTCGAG-CTTCACTGAAGCT---AATTGTTTACAATGGT-TTTCTTAAATGCTAGCAGCATGTATTTGATAAATTGCCGTTACAGCAGTTTAAGTGTCTTGCACGAGAACTGTCGCAACCAACAT---CCTGTAACGG
droMoj3	scaffold_6680:23051247-23051320 -		AATGTAGA-ATATTTTT----------GTTTTTAACGTGAAGAATATA-TTTGTTGTT-AACTTATATCAAGAACTGCATAAAT-ACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_500:4800-4802 -		CGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_187:52772-52777 +		TGACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droAna3	scaffold_13034:673561-673621 +		ATTTTAGTAATGTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTG-------TTAACTTATATGCTGCTACTTAACTGCAAGTGTATATAA----------------------------------A
droFic1	scf7180000454072:3452071-3452106 -		TGTAA---------------------------------------------------------TTAAAATAAAAATTTAATAAAT-AATAGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droTak1	scf7180000415085:9234-9268 -		TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAACAGTGCTAAACAACCTTTCCCTT-----A
droEug1	scf7180000407242:48367-48372 +		TAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
dm3	chr3L:23622882-23623003 -		TTGAA-------------------------------------------------------------------------------------------------------------------CTGAACTGCAC---TTTATTGTTTGTATAAAGA--------------------------T-TCTCGCAGAT----TCGACATGTATCTGCGAAAGTGCTGGCGCGGCAGTTCTGGTTTCTTTTGCGGGAACTGTCGCAATTTACAT---CCTGT-----
droSim2	2l:21924910-21925109 -		TGTGTTGA--TATATTTGAATCCAAGT----------A--------------------------------ATAAAATAAG---CGACTGCTCTGATT----T--GTGTCTCAAAATG-AACTGATCTCTCC---TTTATTAGTCGAG-AAAAACTTAAGCT--AAAAGGTTTACAAGAAT-GTGCTG---CGTTCTCA-------TTGTCCGAAATGCTGCTGCGGCAGTTCTAGTTTTGTTTACCAGAACTGTCGCAATCGACAT---CCTGT-----
droSec2	scaffold_136:31343-31564 +		AATCCA------------------AGTAGTTTAATCCAAGT-----AGTTTAATCCAAGTAGTTTAATTAAGAAAACAAG---CGACTGCTCTGGTT----T--GTGTTTCAAAATA-AACTGAACTCTAA---TTTATTAGTCGAATAAAAACTTAAGCT--AAAATGTTTACAAGAAT-GTGCTG---TGTTTTCA-------TTGTCCGAAATGCTGCTGCGGCAGTTCTAGTTTTGTTTACCAGAACTGTCGCAATCGACAT---CCTGT-----
droYak3	v2_chrUn_6913:12785-12946 -		TCCAA------------------------------------------------------------------------------------------------------------AATG-GAATAAAAAAATATTTTTTATATCTCAAA-CTTAAGCTAAGCT---AAATATATACAACTAT-TTGCTGGTAAGTTGTCAACATGTATCTGCGAAAGTGCTGTTGCGGCAGTTCTAGTTTCTTTGGCGAGAACTGTCGCAATCGACAT---CCTGTCGAAG
droEre2	scaffold_4845:1249596-1249767 +		TTTTG-----------------------------------------------------------------------------------------G-T----T--GTGTCCAA-AATGGAACTAACTCTTTC---TTTATTTTAGAAA-TTAAAGCTAAGCTACAAAATGTTTACAAGATTTGTGTTT---CGTTCTCAACATGTACCCAATAAAGTGTTGATGCGGCAGTTCTAGTTTTGCTTATGAGAACTGTCGCAACTGACAT---CCTGTCAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACCGTATGAATTTAATT----------GTTGTTATCCTAAA-----TGTTGTGTTGATGTAAATAAAATAAGAATTCAATAAAC-ACTGCACCGTTTTCGTTGAATGTTCCAAACTG-AACCTAAAAACTA---TTTATTGTTCGAG-CTTCACTGAAGCT---AATTGTTTACAATGGT-TTTCTTAAATGCTAGCAGCATGTATTTGATAAATTGCCGTTACAGCAGTTTAAGTGTCTTGCACGAGAACTGTCGCAACCAACAT---CCTGTAACGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..CGTATGAATTTAATT----------GTTGTTATCCTA................................................................................................................................................................................................................................................	27	2	11.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	6	0	0	0	1	3	0	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTATCCT.................................................................................................................................................................................................................................................	26	2	6.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	1	2	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTATCC..................................................................................................................................................................................................................................................	25	2	4.00	8	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTTAATT----------GTTGTTATCCTAAA-----T........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTATC...................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTATCCTAAA-----.........................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TAAA-----TGTTGTGTTGATGTAAATAAAA...................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTATCCTAA...............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTAT....................................................................................................................................................................................................................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TACAATGGT-TTTCTTAAATGCTAGCA.................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTTCGTTGAATGTTCCAAACTG-AACC.............................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTTAATT----------GTTGTTATCCT.................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCGTATGAATTTAATT----------GTTGTTATC...................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACCGTATGAATTTAATT----------GTTGTTA.....................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTATA...................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TGTTGTGTTGATGTAAATAAAATA.................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTGTGTTGATGTAAATAAAATAAGAAT............................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACCGTATGAATTTAATT----------GTTGTTC.....................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTT.........................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATT----------GTTGTTA.....................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGAAGCT---AATTGTTTACAATGGT-C.................................................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGAAGCT---AATTGTTTACAATGGT-T.................................................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ACTGCACCGTTTTCGTTGAATGTT..........................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AAGAATTCAATAAAC-ACTGCACCG.........................................................................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAGTGTCTTGCACGAGAACTG..........................	21	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATGTAGA-ATATTTTT----------GTTTTTAACGTGAAGAATATA-TTTGTTGTT-AACTTATATCAAGAACTGCATAAAT-ACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................T----------GTTTTTAACGTGAAGAATATA-TTTGT.................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................TTATATCAAGAACTGCATAAAT-ACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	25	1	1.00	1	1	0	0	0	0	0
.........ATATTTTT----------GTTTTTAACGTGAAGA............................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................TTGTT-AACTTATATCAAGAACTGCA........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................T----------GTTTTTAACGTGAAGAATATA-TTTGTTG...............................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0

dp5

CGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TGACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ATTTTAGTAATGTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTG-------TTAACTTATATGCTGCTACTTAACTGCAAGTGTATATAA----------------------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droFic1

TGTAA---------------------------------------------------------TTAAAATAAAAATTTAATAAAT-AATAGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAACAGTGCTAAACAACCTTTCCCTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTGAA-------------------------------------------------------------------------------------------------------------------CTGAACTGCAC---TTTATTGTTTGTATAAAGA--------------------------T-TCTCGCAGAT----TCGACATGTATCTGCGAAAGTGCTGGCGCGGCAGTTCTGGTTTCTTTTGCGGGAACTGTCGCAATTTACAT---CCTGT-----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................ACTGTCGCAATTTACAT---CCTGT-----	22	5	2.20	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GACATGTATCTGCGAAAGTGC.............................................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................T-TCTCGCAGAT----TCGACATGT...........................................................................	20	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTTCTTTTGCGGGAACTGTCG.......................	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TGTTTGTATAAAGA--------------------------T-TCTCGC............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GTTTGTATAAAGA--------------------------T-TCTCGCA...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................TCTCGCAGAT----TCGACATGTAT.........................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................T----TCGACATGTATCTGCGAAAG................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TATCTGCGAAAGTGCTGGCG........................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCTGCGAAAGTGCTGGCGCGG.....................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GAACTGTCGCAATTTACAT---CCT.......	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CTGTCGCAATTTACAT---CCTGT-----	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AACTGTCGCAATTTACAT---CCT.......	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AACTGTCGCAATTTACAT---CCTGT-----	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GAACTGTCGCAATTTACAT---CC........	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGTGTTGA--TATATTTGAATCCAAGT----------A--------------------------------ATAAAATAAG---CGACTGCTCTGATT----T--GTGTCTCAAAATG-AACTGATCTCTCC---TTTATTAGTCGAG-AAAAACTTAAGCT--AAAAGGTTTACAAGAAT-GTGCTG---CGTTCTCA-------TTGTCCGAAATGCTGCTGCGGCAGTTCTAGTTTTGTTTACCAGAACTGTCGCAATCGACAT---CCTGT-----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................TGTTTACCAGAACTGTCGCAATCGA................	25	8	12.13	97	0	0	0	0	0	0	71	2	21	3	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTCA-------TTGTCCGAAATGCTGCTGCGGC....................................................	26	5	5.00	25	0	0	0	1	0	0	11	9	2	0	1	0	1	0	0	0	0
.................................................................................................................................................................................................TCTCA-------TTGTCCGAAATGCTGCTGCGGC....................................................	27	5	4.80	24	0	0	0	1	0	0	11	6	0	1	0	0	5	0	0	0	0
................................................................................................................................................................................................TTCTCA-------TTGTCCGAAATGCTGCTGCGGC....................................................	28	5	3.00	15	0	0	0	0	0	0	7	4	0	2	0	0	1	1	0	0	0
...................................................................................................................................................................................................TCA-------TTGTCCGAAATGCTGCTGCGGC....................................................	25	8	2.13	17	0	0	0	1	0	0	4	6	0	1	5	0	0	0	0	0	0
.............................................................................................................................................................................................................TTGTCCGAAATGCTGCTGCGGCAGT.................................................	25	8	2.00	16	0	0	0	1	0	0	2	3	0	1	9	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTTACCAGAACTGTCGCAATGA.................	24	8	1.50	12	0	0	0	0	0	0	5	0	7	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGACA..............	24	8	1.38	11	0	0	0	0	0	0	0	2	2	1	6	0	0	0	0	0	0
............................................................................................TGATT----T--GTGTCTCAAAATG-AACTGAT..........................................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.......................................................................TAAAATAAG---CGACTGCTCTGATT----T--GTG............................................................................................................................................................................	27	3	1.00	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
.................................................................................................................AATG-AACTGATCTCTCC---TTTATTAGT........................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TGCTGCTGCGGCAGTTCTAGT...........................................	21	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGGTTTACAAGAAT-GTGCTG---CGTTC....................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGACAT---C.........	26	6	0.67	4	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................AGGTTTACAAGAAT-GTGCTG---CGTT.....................................................................................	24	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................CTCA-------TTGTCCGAAATGCTGCTGCGGCA...................................................	27	5	0.60	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTCA-------TTGTCCGAAATGCTGCTGCGG.....................................................	26	5	0.60	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
........................................................................................................GTGTCTCAAAATG-AACTGATCTCT......................................................................................................................................................	24	4	0.50	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTTTACCAGAACTGTCGCAATCGA................	24	8	0.50	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTCA-------TTGTCCGAAATGCTGCTGCGG.....................................................	25	5	0.40	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTCA-------TTGTCCGAAATGCTGCTGCGG.....................................................	27	5	0.40	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTCA-------TTGTCCGAAATGCTGCTGCGGCA...................................................	28	5	0.40	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGTTTACCAGAACTGTCGCAATCGA................	26	8	0.38	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TACCAGAACTGTCGCAATCGACA..............	23	8	0.38	3	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0
.............................................................................................................................................................................................................TTGTCCGAAATGCTGCTGCGGCAGTTC...............................................	27	8	0.38	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CA-------TTGTCCGAAATGCTGCTGCGGC....................................................	24	8	0.38	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTCCGAAATGCTGCTGCGGCAGTTC...............................................	26	8	0.38	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTTACCAGAACTGTCGCAA....................	21	8	0.38	3	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0
................................................................................................................................TCC---TTTATTAGTCGAG-AAAAACTTA..........................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................AGGTTTACAAGAAT-GTGCTG---CGTTT....................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................TAAG---CGACTGCTCTGATT----T--GTGTCTCAA......................................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................CTGATT----T--GTGTCTCAAAATG-AACT.............................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TACAAGAAT-GTGCTG---CGTTCTCA-------TTGTC.....................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................TGATT----T--GTGTCTCAAAATG-AACTGATC.........................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GTGCTG---CGTTCTCA-------TTGTCCGAAAT...............................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................TAAG---CGACTGCTCTGATT----T--GTG............................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TACCAGAACTGTCGCAATCGACAT---C.........	25	6	0.33	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................ACAAGAAT-GTGCTG---CGTTCTCA-------T.........................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................TGCTCTGATT----T--GTGTCTCAAAATG-AAC..............................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GTCCGAAATGCTGCTGCGGC....................................................	20	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................GTGTCTCAAAATG-AACTGATCTCTC.....................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTTACCAGAACTGTCGCAAT...................	20	8	0.25	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATC..................	25	8	0.25	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTTACCAGAACTGTCGCAATC..................	23	8	0.25	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................T--AAAAGGTTTACAAGAAT-GTGC..............................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TACCAGAACTGTCGCAATC..................	19	8	0.25	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................TTAAGCT--AAAAGGTTTACAAGAAT-GTGC..............................................................................................	28	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................A-------TTGTCCGAAATGCTGC..........................................................	17	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTCCGAAATGCTGCTGCGGCAGT.................................................	24	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAAT...................	24	8	0.25	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGA................	22	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................AGGTTTACAAGAAT-GTGCTG---.........................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................T--GTGTCTCAAAATG-AACTGATCTCT......................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TACCAGAACTGTCGCAATCGA................	21	8	0.25	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTCA-------TTGTCCGAAATGCTGCTGCGGCT...................................................	27	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTTCTCA-------TTGTCCGAAATGCTGC..........................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................CTCA-------TTGTCCGAAATGCTGCTGCGGCAGT.................................................	29	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................GTTCTCA-------TTGTCCGAAATGC.............................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGACAT---CC........	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................TAGTTTTGTTTACCAGAACTGTCGCT.....................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................TTCTAGTTTTGTTTACCAGAACTGTCGCAA....................	30	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTTTGTTTACCAGAACTGTCGCAAT...................	25	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TCTAGTTTTGTTTACCAGAACTGTCGCAAT...................	30	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CTGCGGCAGTTCTAGTTTTGT......................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGCTGCGGCAGTTCTAGTTTTGT......................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TAGTTTTGTTTACCAGAACTGTCGCAAT...................	28	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGCTGCGGCAGTTCTAGTTTTG.......................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTCCGAAATGCTGCTGCGGCAGTT................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................TCA-------TTGTCCGAAATGCTGCTGCGG.....................................................	24	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCA-------TTGTCCGAAATGCTGCTGCG......................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATCGACA..............	29	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTTACCAGAACTGTCGCAATCGA................	23	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCG.................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................TCA-------TTGTCCGAAATGCTGCTGCGGCA...................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATCGA................	27	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTTACCAGAACTGTCGCAATCGACA..............	25	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTGTCCGAAATGCTGCTGCGGCAGTA................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCAGTTCTAGTTTTG.......................................	15	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCA-------TTGTCCGAAATGCTG...........................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................CA-------TTGTCCGAAATGCTGCTG........................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................TCCGAAATGCTGCTGCGGCAGTT................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTCCGAAATGCTGCTGCGGC....................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTTACCAGAACTGTCGCAATCG.................	24	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GAAATGCTGCTGCGGCAGT.................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAA....................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................TTTACCAGAACTGTCGCAATC..................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGACAT---..........	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGAA...............	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GTCCGAAATGCTGCTGCGGCAGTTCA..............................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGTTTACCAGAACTGTCGCAATCGT................	26	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCA-------TTGTCCGAAATGCTGCTGCGGCAGT.................................................	28	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTTACCAGAACTGTCGCAATCGACA..............	27	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TACCAGAACTGTCGCAAT...................	18	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................ACCAGAACTGTCGCAAT...................	17	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTGTCCGAAATGCTGCT.........................................................	17	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................A-------TTGTCCGAAATGCTGCTGCGGCA...................................................	24	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTGTCCGAAATGCTGCTGCGGCAGTTCT..............................................	28	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTTTACCAGAACTGTCGCAATCGAA...............	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

AATCCA------------------AGTAGTTTAATCCAAGT-----AGTTTAATCCAAGTAGTTTAATTAAGAAAACAAG---CGACTGCTCTGGTT----T--GTGTTTCAAAATA-AACTGAACTCTAA---TTTATTAGTCGAATAAAAACTTAAGCT--AAAATGTTTACAAGAAT-GTGCTG---TGTTTTCA-------TTGTCCGAAATGCTGCTGCGGCAGTTCTAGTTTTGTTTACCAGAACTGTCGCAATCGACAT---CCTGT-----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................CAAGAAT-GTGCTG---TGTTTTCA-------TTGTC.....................................................................	26	3	9.00	27	16	0	11	0
.............................................................................................................................................................................CAAGAAT-GTGCTG---TGTTTTCA-------TT........................................................................	23	3	8.67	26	6	0	17	3
.............................................................................................................................................................................CAAGAAT-GTGCTG---TGTTTTCA-------TTG.......................................................................	24	3	6.33	19	13	0	6	0
.............................................................................................................................................................................CAAGAAT-GTGCTG---TGTTTTCA-------TTGT......................................................................	25	3	3.33	10	6	0	3	1
....................................................................................................................A-AACTGAACTCTAA---TTTATTAGTCGAA....................................................................................................................................	27	2	1.00	2	2	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATC..................	25	17	0.94	16	10	0	6	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAA....................	23	18	0.83	15	3	0	12	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAAT...................	24	17	0.82	14	10	0	4	0
............................................................................................................................................................................ACAAGAAT-GTGCTG---TGTTTTCA-------TT........................................................................	24	3	0.67	2	0	0	2	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATCGA................	27	14	0.57	8	5	0	3	0
................................................................TAATTAAGAAAACAAG---CGACTGCTCT..........................................................................................................................................................................................	26	6	0.33	2	1	0	1	0
.............................................................................................................................................................................CAAGAAT-GTGCTG---TGTTTTCA-------T.........................................................................	22	3	0.33	1	1	0	0	0
..............................................................................................................................................................................AAGAAT-GTGCTG---TGTTTTCA-------TTGT......................................................................	24	3	0.33	1	1	0	0	0
...............................................................TTAATTAAGAAAACAAG---CGACTGCTCT..........................................................................................................................................................................................	27	6	0.33	2	2	0	0	0
.............................................................................................................................................................................CAAGAAT-GTGCTG---TGTTTTCA-------TTGTA.....................................................................	26	3	0.33	1	1	0	0	0
............................................................................................................................................................................ACAAGAAT-GTGCTG---TGTTTTCA-------TTGTC.....................................................................	27	3	0.33	1	1	0	0	0
...............................................................................................................................................................................AGAAT-GTGCTG---TGTTTTCA-------TT........................................................................	21	4	0.25	1	0	0	1	0
............................................................AGTTTAATTAAGAAAACAAG---CGACTGC.............................................................................................................................................................................................	27	4	0.25	1	0	0	1	0
...............................................................................................................................................................................AGAAT-GTGCTG---TGTTTTCA-------TTGT......................................................................	23	4	0.25	1	1	0	0	0
..................................................................................................................................................................................................TTCA-------TTGTCCGAAATGCTGCTGC.......................................................	23	5	0.20	1	1	0	0	0
......................................................................................................................AACTGAACTCTAA---TTTATTAGTCGAA....................................................................................................................................	26	5	0.20	1	1	0	0	0
..................................................................................................................................................................................................TTCA-------TTGTCCGAAATGCTGCTGCGGC....................................................	26	5	0.20	1	0	0	1	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATG..................	25	17	0.18	3	1	0	2	0
...............................TAATCCAAGT-----AGTTTAATCCAAGTAGT........................................................................................................................................................................................................................	27	6	0.17	1	0	0	1	0
....................................................................TAAGAAAACAAG---CGACTGCTCTGGTT----..................................................................................................................................................................................	26	6	0.17	1	0	0	1	0
................................................................TAATTAAGAAAACAAG---CGACTGCT............................................................................................................................................................................................	24	6	0.17	1	1	0	0	0
.................................................................................................................................................................................................................................................TTACCAGAACTGTCGCAATCGACA..............	24	13	0.15	2	2	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAATCG.................	26	14	0.14	2	1	0	1	0
..............................................................................AG---CGACTGCTCTGGTT----T--GTGTTTCAAAA....................................................................................................................................................................	28	8	0.13	1	1	0	0	0
.......................................................................................................................................................................................................................TGCTGCTGCGGCAGTTCTAGTTTTGT......................................	26	17	0.12	2	2	0	0	0
............................................................................CAAG---CGACTGCTCTGGTT----T--GT.............................................................................................................................................................................	21	9	0.11	1	1	0	0	0
..................................................................................................................................................................................................................................................TACCAGAACTGTCGCAATCGACAT---CCT.......	27	13	0.08	1	1	0	0	0
.............................................................................................................................................................................................................................................TTGTTTACCAGAACTGTCGCAATCGAC...............	27	13	0.08	1	1	0	0	0
.............................................................................................................................................................................................................................................TTGTTTACCAGAACTGTCGCAATCGA................	26	14	0.07	1	1	0	0	0
................................................................................................................................................................................................................................................TTTACCAGAACTGTCGCAATCGA................	23	14	0.07	1	1	0	0	0
.............................................................................................................................................................................................................................................TTGTTTACCAGAACTGTCGCAATCG.................	25	14	0.07	1	1	0	0	0
.......................................................................................................................................................................................................................TGCTGCTGCGGCAGTTCTAGTTTTG.......................................	25	17	0.06	1	1	0	0	0
.............................................................................................................................................................................................................................TGCGGCAGTTCTAGTTTTGTTTACCAGA..............................	28	17	0.06	1	1	0	0	0
..........................................................................................................................................................................................................................TGCTGCGGCAGTTCTAGTTTTGT......................................	23	17	0.06	1	0	0	1	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCA.....................	22	18	0.06	1	1	0	0	0
............................................................................................................................................................................................................................................TTTGTTTACCAGAACTGTCGCAC....................	23	18	0.06	1	1	0	0	0
.............................................................................................................................................................................................................TTGTCCGAAATGCTGCTGCGG.....................................................	21	19	0.05	1	0	0	1	0

droYak3

TCCAA------------------------------------------------------------------------------------------------------------AATG-GAATAAAAAAATATTTTTTATATCTCAAA-CTTAAGCTAAGCT---AAATATATACAACTAT-TTGCTGGTAAGTTGTCAACATGTATCTGCGAAAGTGCTGTTGCGGCAGTTCTAGTTTCTTTGGCGAGAACTGTCGCAATCGACAT---CCTGTCGAAG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TTTTG-----------------------------------------------------------------------------------------G-T----T--GTGTCCAA-AATGGAACTAACTCTTTC---TTTATTTTAGAAA-TTAAAGCTAAGCTACAAAATGTTTACAAGATTTGTGTTT---CGTTCTCAACATGTACCCAATAAAGTGTTGATGCGGCAGTTCTAGTTTTGCTTATGAGAACTGTCGCAACTGACAT---CCTGTCAAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-13.5	-13.4	-12.6	-12.5

dvi_9653

scaffold_12954:278629-278779 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACCGTATGAATTTAATTGTTGTTATCCTAAATGTTGTGTTGATGTAAATAAAATAAGAATTCAATAAACACTGCACCGTTTTCGTTGAATGTTCCAAACTGAACCTAAAAACTATTTATTGTTCGAGCTTCACTGAAGCTAATTGTTTACAATGGTTTTCTTAAATGCTAGCAGCATGTATTTGATAAATTGCCGTTACAGCAGTTTAAGTGTCTTGCACGAGAACTGTCGCAACCAACATCCTGTAACGG *****************************************************************************......((..............((((...((((.(((.........((((((...))))))))).)))).....))))..............))****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060676 9xArg_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	M047 female body	SRR060688 160_ovaries_total	SRR060675 140x9_ovaries_total	SRR060681 Argx9_testes_total	SRR060685 9xArg_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060656 9x160_ovaries_total	SRR060674 9x140_ovaries_total	SRR060678 9x140_testes_total	SRR060654 160x9_ovaries_total	SRR060679 140x9_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060673 9_ovaries_total	GSM1528803 follicle cells	SRR060670 9_testes_total
..CGTATGAATTTAATTGTTGTTATCCTA..............................................................................................................................................................................................................................	27	0	2	11.00	22	6	6	3	1	0	0	1	1	3	1	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTATCCT...............................................................................................................................................................................................................................	26	0	2	6.00	12	1	1	2	3	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTATCC................................................................................................................................................................................................................................	25	0	2	4.00	8	3	2	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0
..........TTTAATTGTTGTTATCCTAAAT...........................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTATC.................................................................................................................................................................................................................................	24	0	2	1.00	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTATCCTAAA............................................................................................................................................................................................................................	29	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TAAATGTTGTGTTGATGTAAATAAAA......................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTATCCTAA.............................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTAT..................................................................................................................................................................................................................................	23	0	2	1.00	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................TACAATGGTTTTCTTAAATGCTAGCA..............................................................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTTCGTTGAATGTTCCAAACTGAACC..................................................................................................................................................	26	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........TTTAATTGTTGTTATCCT...............................................................................................................................................................................................................................	18	0	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCGTATGAATTTAATTGTTGTTATC.................................................................................................................................................................................................................................	25	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACCGTATGAATTTAATTGTTGTTA...................................................................................................................................................................................................................................	24	0	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTATA.................................................................................................................................................................................................................................	24	1	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGTTGTGTTGATGTAAATAAAATA....................................................................................................................................................................................................	24	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..CGTATGAATTTAATTGTTGTTCTCC................................................................................................................................................................................................................................	25	1	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................TTGTGTTGATGTAAATAAAATAAGAAT...............................................................................................................................................................................................	27	0	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
ACCGTATGAATTTAATTGTTGTTC...................................................................................................................................................................................................................................	24	1	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTT.......................................................................................................................................................................................................................................	18	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGTATGAATTTAATTGTTGTTA...................................................................................................................................................................................................................................	22	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................CTGAAGCTAATTGTTTACAATGGTC..............................................................................................	25	1	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................CTGAAGCTAATTGTTTACAATGGTT..............................................................................................	25	0	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACTGCACCGTTTTCGTTGAATGTT..............................................................................................................................................................	24	0	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................AAGAATTCAATAAACACTGCACCG.............................................................................................................................................................................	24	0	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AAGTGTCTTGCACGAGAACTG.......................	21	0	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................TACCGTTGCAGCAGTTTAAGTGTCT....................................	25	2	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................TGTTCGAGCGTCACT.....................................................................................................................	15	1	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.CCGTCGGAATTTAATTGT........................................................................................................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................GACTATTTAGTGGTCGAGC...........................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTCACTGAAGCCAATGGAT........................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0