ID:

dvi_9646

 Coordinate:

scaffold_12952:217621-217771 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -9.4 -9.3

Flybase annnotation

exon [dvir_GLEANR_3008:2]; CDS [Dvir\GJ18407-cds]; exon [dvir_GLEANR_3009:1]; CDS [Dvir\GJ18408-cds]; intron [Dvir\GJ18408-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
mature
star
  1. scaffold_10322:257214-257234 -
  2. scaffold_12723:885594-885614 -
  3. scaffold_12734:392650-392670 +
  4. scaffold_12855:9027212-9027232 +
  5. scaffold_12928:4472079-4472099 -
  6. scaffold_12928:7609336-7609356 +
  7. scaffold_12929:547456-547476 -
  8. scaffold_12937:293305-293325 -
  9. dvi_9646  scaffold_12952:217701-217721 -
  10. scaffold_12958:2910405-2910425 -
  11. scaffold_12958:2910443-2910463 -
  12. scaffold_12958:3010904-3010924 -
  13. scaffold_12967:270318-270338 -
  14. scaffold_13049:22988235-22988255 -
  15. scaffold_13050:536315-536335 -
  16. scaffold_13050:1243916-1243936 +
  17. scaffold_13052:821451-821471 -
  18. scaffold_13052:824554-824574 +
  19. scaffold_13052:979591-979611 -
  20. scaffold_13324:2237821-2237841 -
  21. scaffold_12723:199634-199654 +
  22. scaffold_12954:1474268-1474288 +
  23. scaffold_12970:795623-795643 +
  24. dvi_17477  scaffold_13047:18354333-18354353 +

Sense Strand Reads

###-----------------------------------############---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGCTCAATCCGGAAAACTAAAGGCCACTCTGTCAGACATGACGAGCAAGGTAAGGACTACCAGTCGTCGATTATTCGTAATGGACCAAACTTCAACAAGTAAAAGGTTCTAGTCGGGAGCTCCCGACTAGGGGATACCCTGAACCCTCTTATTCCAACACCAAATAAATTAATAAAAAAAAGTTCCCTTGGCAGGGCTCGAACTCGCAACTGACCGCATTACTTGCTGTCGTCTACTCAACAGCGACACC
**********************************************************......((.(((((((........(((((..((((....))))....))))))))))))))..********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 SRR060655
9x160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060659
Argentina_testes_total
 M047
female body
 M027
male body		 SRR060688
160_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060689
160x9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060675
140x9_ovaries_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106713
embryo_0-2h
 SRR1106720
embryo_8-10h
...........................................................................................................................................................................................................................TTACTTGCTGTCGTCTACTCAACAGC...... 26 0 1 3.00 3 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAG....... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTACTTGCTGTCGTCTACTCAACAG....... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AACTGACCGCATTACTTGCTGTCGT.................. 25 0 3 2.00 6 3 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCGCATTACTTGCTGTCGTCTACT............. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTGCTGTCGTCTACTCAACAGCGAC... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTACTTGCTGTCGTCTACT............. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAGCGACA.. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCGCATTACTTGCTGTCGTCTACTCAAC......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAGC...... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCGCATTACTTGCTGTCGTCTA............... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTGCTGTCGTCTACTCAACAGCGA.... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCGCATTACTTGCTGTCGTCTACTCA........... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TACCAGTCGTCGATTATTCGTAATGGA...................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TACCAGTCGTCGATTATTCGTAATGG....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CATTACTTGCTGTCGTCTACTCA........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTACTTGCTGTCGTCTACTCAACAGCGA.... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TCTACTCAACAGCGACACC 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAGCG..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCATTACTTGCTGTCGTCTACTCAAC......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTACTTGCTGTCGTCTACTCAAC......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCT....................... 24 0 20 0.75 15 11 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTAC............................ 26 0 20 0.75 15 0 0 0 0 0 2 0 0 5 0 5 0 0 2 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AACTGACCGCATTACTTGCTGTCGTC................. 26 0 3 0.67 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTA............................. 25 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATT.............................. 24 0 20 0.45 9 0 0 2 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACT........................... 27 0 20 0.35 7 0 2 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0
......................................AAGACGATCAAGGTAAGGA.................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCTGTCGT.................. 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGC................................. 21 0 20 0.30 6 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCTGTCG................... 28 0 20 0.30 6 0 0 0 0 3 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCTGTC.................... 27 0 20 0.30 6 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................GACGATCAAGGTAAGGAT................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACC........................... 27 1 20 0.20 4 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGGCAGGGCTCGAACTCGCAACTG...................................... 24 0 20 0.15 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACCGCATTACTTG......................... 22 0 20 0.15 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................CGCAACTGACCGCATTACTTGCTGTCG................... 27 0 20 0.15 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCG.................................. 20 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGC........................ 23 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACTT.......................... 28 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................TAAAAGGTTCTAGTCGGGAGC.................................................................................................................................. 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................AACAGCAAGGTAAGGTCTAC.............................................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TAATTCGTAATGGTCCAA.................................................................................................................................................................. 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCC................................ 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGAACTCGCAACTGACCGCATTACTTGC........................ 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AAAAGTTCCCTTGGCAGGGCTCGAAC............................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGGGCTCGAACTCGCAACTGACCGC................................. 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGGGAGCTCCCGACTAGGGGA.................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GGGCTCGAACTCGCAACTGACCGCA................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TAAAAAAAAGTTCCCTTGGCAGGGCT.................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTCCCTTGGCAGGGCTCGAACTCGC........................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCAT............................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTTACCGCATTACTTGCTGTCG................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AGTTCCCTTGGCAGGGCTCGA................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGTCCGCATTATC........................... 27 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTCCCTTGGCAGGGCTCGAACT.............................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTATC........................... 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCTCGAACTCGCAACTGACCGC................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACC................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACAAGTAAAAGGTTCTAGTCGGGA.................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGGCAGGGCTCGAACTCGCA.......................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACTTC......................... 29 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CTCCCGACTAGGGGATACCCTGAACCCTCTTAT.................................................................................................. 33 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................TCCCTTGGCAGGGCTCGAACTCGCA.......................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTAGCAACTGACCGCATTAC............................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CTCGCAACTGACCGCATTACTTGCTGTC.................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAACTCGCAACTGACCGCATTACT........................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACTC.......................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATGAA............................ 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AACTGACCGCATTACTTGCTGTC.................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGAACTCGCAACTGACCGCATTAC............................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CGCAACTGACCGCATTACTTG......................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGGCAGGGCTCGAACTCGCAACTGA..................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGGCAGGGCTCGAACTCGCAACTGACC................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCGAACTCGCTACTGACCGCATTACT........................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCCCTTGGCAGGGCTCGAACTCGC........................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TAAAAAAAAGTTCCCTTGGCAGGGCTCG.................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGGCAGGGCTCGAACTCGCAAC........................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAGTTCCCTTGGCAGGGCTCGAA................................................ 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCGCAACTGACGGCATTACTTGCTGTC.................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGAACTCGCAACTGACCGCATTACT........................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CAGGGCTCGAACTCGCAACTGACCGCA................................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCCCTTGGCAGGGCTCGAAC............................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCTCGAACTCGCAACTGACCGCATTAC............................ 27 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGAACTCGCAACTGAC.................................... 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATCGAGTTAGGCCTTTTGATTTCCGGTGAGACAGTCTGTACTGCTCGTTCCATTCCTGATGGTCAGCAGCTAATAAGCATTACCTGGTTTGAAGTTGTTCATTTTCCAAGATCAGCCCTCGAGGGCTGATCCCCTATGGGACTTGGGAGAATAAGGTTGTGGTTTATTTAATTATTTTTTTTCAAGGGAACCGTCCCGAGCTTGAGCGTTGACTGGCGTAATGAACGACAGCAGATGAGTTGTCGCTGTGG
**********************************************************************************************************************************......((.(((((((........(((((..((((....))))....))))))))))))))..********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060678
9x140_testes_total
 M047
female body
 SRR060681
Argx9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 V053
head
 SRR060674
9x140_ovaries_total
 SRR060683
160_testes_total
 SRR060670
9_testes_total
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060660
Argentina_ovaries_total
 V116
male body		 SRR060657
140_testes_total
 GSM1528803
follicle cells		 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V047
embryo
 SRR1106729
mixed whole adult body
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR1106718
embryo_6-8h
...........................................................................................................................................................................................................................AATGAACGACAGCAGATGAGTTG......... 23 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTAATGAACGACAGTAGATGAGTTG......... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACCGTCCCGAGCTTGAGCGTTGACT..................................... 25 0 20 0.95 19 6 2 0 2 0 0 0 0 0 3 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CTTGGGAGAATAAGGTTGTGGTTT...................................................................................... 24 0 20 0.95 19 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTATGGGACTTGGGAGAATAAGGT.............................................................................................. 24 0 20 0.50 10 0 0 0 0 0 0 0 0 3 0 5 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTATGGGACTTGGGAGAATAAGGTT............................................................................................. 26 0 20 0.50 10 0 0 0 0 4 2 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCCCTATGGGACTTGGGAGAATAAGGT.............................................................................................. 27 0 20 0.45 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTATGGGACTTGGGAGAATAAGGTT............................................................................................. 25 0 20 0.40 8 0 0 0 7 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCCTATGGGACTTGGGAGAATAAGGT.............................................................................................. 26 0 20 0.35 7 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCAAGGGAACCGTCCCGAGCTTGAGC............................................ 27 0 20 0.30 6 0 0 1 0 0 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTCAAGGGAACCGTCCCGAGCTTGAGC............................................ 28 0 20 0.30 6 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTAATTATTTTTTTTCAAGGGAACCGT......................................................... 27 0 20 0.30 6 0 2 0 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CTCGTGCCATTCTTCATGGTC........................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACCGTCCCGAGCTTGAGCGTTGAC...................................... 24 0 20 0.25 5 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GAACCGTCCCGAGCTTGAGCGTTGACT..................................... 27 0 20 0.25 5 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGGGAGAATAAGGTTGTGGT........................................................................................ 21 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAAGGGAACCGTCCCGAGCTTGAGC............................................ 26 0 20 0.20 4 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGTCCCGAGCTTGAGCGTTGACT..................................... 23 0 20 0.20 4 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCCGAGCTTGAGCGTTGACTGGCGT................................ 25 0 20 0.20 4 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCCGAGCTTGAGCGTTGACTG.................................... 21 0 20 0.20 4 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CTTGGGAGAATAAGGTTGTGGTT....................................................................................... 23 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCGTGCCATTCCTAATGGAC........................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACTTGGGAGAATAAGGTTGTGGTT....................................................................................... 24 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GAACCGTCCCGAGCTTGAGC............................................ 20 0 20 0.15 3 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAAGGGAACCGTCCCGAGCTTGAGCGT.......................................... 27 0 20 0.15 3 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CCGTCCCGAGCTTGAGCGTTGACT..................................... 24 0 20 0.15 3 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTCCCGAGCTTGAGCGTTGA....................................... 20 0 20 0.15 3 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCATACCTGATGGTCC.......................................................................................................................................................................................... 16 2 19 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCTTGAGCGTTGACTGGCGTAATGA........................... 26 0 20 0.10 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTTCAAGGGAACCGT......................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTTTTTTCAAGGGAACCG.......................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CAGCCCTCGAGGGCTGATCCCCTATGGGACT............................................................................................................ 31 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGACTTGGGAGAATAAGGTT............................................................................................. 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTTCAAGGGAACCGTCCCGAGCTTGAGC............................................ 28 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCCCTATGGGACTTGGGAGAATAAGGTT............................................................................................. 28 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGGGAACCGTCCCGAGCTTGAGC............................................ 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGAGAATAAGGTTGTGGTT....................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGACTTGGGAGAATAAGGTTGT........................................................................................... 22 0 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................CGAGGGCTGATCCCCTATGGGACTT........................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAAGGGAACCGTCCCGAGCTTGAGC............................................ 25 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGACTTGGGAGAATAAGGT.............................................................................................. 22 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATAAGGTTGTGGTTTATTTAATTATT........................................................................... 26 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACCGTCCCGAGCTTGAGCGTTGACT..................................... 26 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGGCTGATCCCCTATGGGACT............................................................................................................ 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCCGAGCTTGAGCGTTGACTG.................................... 22 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCCGAGCTTGAGCGTTGACT..................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCTTGAGCGTTGACTGGCG................................. 20 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTATGGGACTTGGGAGAATAA................................................................................................. 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTAATTATTTTTTTTCAAGGGAACCG.......................................................... 26 0 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTTCATTTTCCAAGATCAGC....................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGGGAACCGTCCCGAGCTTGAGCGTT......................................... 27 0 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTCAAGGGAACCGTCCCGAGCTTG............................................... 25 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................AACCGTCCCGAGCTTGAGCGTTGAC...................................... 25 0 20 0.10 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGACTTGGGAGAATAAGGTTG............................................................................................ 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGAGAATAAGGTTGTGGTTTAT.................................................................................... 22 0 20 0.10 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCTTGAGCGTTGACTGGCGTAAT............................. 24 0 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGACTTGGGAGAATAAGGTT............................................................................................. 23 0 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTAATTATTTTTTTTCAAGGGAACCGTC........................................................ 28 0 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGGGAACCGTCCCGAGCTTGAGCGT.......................................... 26 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTTTTTCAAGGGAACCGT......................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCCTATGGGACTTGGGAGAATAAGGTT............................................................................................. 27 0 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGGAACCGTCCCGAGCTTGAGC............................................ 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGGAGAATAAGGTTGTGGTTTAT.................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTTCAAGGGAACCGTCCCGAGCT................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAAGGGAACCGTCCCGAGCTTGAGCGTT......................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGAGAATAAGGTTGTGGTTTA..................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAAGGGAACCGTCCCGAGCTTGAGCGT.......................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CCGTCCCGAGCTTGAGCGTTG........................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGAACCGTCCCGAGCTTGAGCGTTGACT..................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CTTGGGAGAATAAGGTTGTGGTTTATT................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GAACCGTCCCGAGCTTGAGCGTTGAC...................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGAACCGTCCCGAGCTTGAGCGTTGAC...................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGTCCCGAGCTTGAGCGTTG........................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTAAGGGAACCGTCCCGAGCTTGAGCG........................................... 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACCGTCCCGAGCTTGAGCGTTGA....................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGGAGAATAAGGTTGTGGTTTATT................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAGCGTTGACTGGCGTAATGAACGACAG.................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCCGAGCTTGAGCGTTGACTGGCG................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGTCCCGAGCTTGAGCGTTGA....................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGAATAAGGTTGTGGTTTATTT.................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACCGTCCCGAGCTTGAGCGTTGA....................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAGGGAACCGTCCCGAGCTTGAGC............................................ 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCTTGAGCGTTGACTGGCGT................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGAGAATAAGGTTGTGGTTTATT................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCCCTATGGGACTTGGGAGAATAAG................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TTTTCAAGGGAACCGTCCCGAGCTTGAGCGTTGACTGGCG................................. 40 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................AGGGAACCGTCCCGAGCTTGA.............................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGGGCTGATCCCCTATGGGA.............................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTATGGGACTTGGGAGAATAAGGTTG............................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GTCAAGGGAACCGTCCCGAGCTTGAGCGT.......................................... 29 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACCGTCCCGAGCTTGAGCGTTGACG..................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTCCCGAGCTTGAGCGTTGGC...................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................TCCCCTATGGGACTTGGGAG...................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................TTTCAAGGGAACCGTCCCGAGCTTGA.............................................. 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAATTATTTTTTTTCAAGGGAACCG.......................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAATTATTTTTTTTCAAGGGAACCGTC........................................................ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTACCGTCCCGAGCTTGAGCGTTGACT..................................... 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGCGTTGACTGGCGTAATGAACG........................ 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTCCCGAGCTTGAGCGTTGACT..................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CTTGGGAGAATAAGGTTGT........................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GAGCTTGAGCGTTGACTGGCGTAAT............................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGACTTGGGAGAATAAGGTTGT........................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGAACCGTCCCGAGCTTGA.............................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CGAGGGCTGATCCCCTATGGGA.............................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GAGAATAAGGTTGTGGTTTATTTAAT............................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGACTTGGGAGAATAAGGTTGTGGTT....................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTGGTTTATTTAATTATTTTT........................................................................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGACTTGGGAGAATAAGGT.............................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCGAACCGTCCCGAGCTTGAGC............................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGGGAACCGTCCCGAGCTTGAGCGT.......................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGGGAACCGTCCCGAGCTTG............................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGCGTAATGAACGACAGC................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................GAGAATAAGGTTGTGGTTT...................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATTATTTTTTTTCAAGGGAACCGT......................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCCGAGCTTGAGCGTTGACT..................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAAGGGAACCGTCCCGAGCTTGAGCG........................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTAAGGGAACCGTCCCGAGCTTGAGC............................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGTCCCGAGCTTGAGCGTTGACTG.................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CGAGCTTGAGCGTTGACTGGCGTAAT............................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACTTGGGAGAATAAGGTTGTGGTTTAT.................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAGCGTTGACTGGCGTAATGA........................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGGGAGAATAAGGTTGTGGTTTATT................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGGGAACCGTCCCGAGCTTGAGCGT.......................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGGGAACCGTCCCGAGCTTGAGC............................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCCCTATGGGACTTGGGAGAA.................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCAAGGGAACCGTCCCGAGCTTGAGCGT.......................................... 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTCAAGGGAACCGTCCCGAGCT................................................. 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTCCCGAGCTTGAGCGTTGAC...................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATAAGGTTGTGGTTTATTTAA................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACCGCCCCGAGCTTGAGCGTTGACT..................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GGGACTTGGGAGAATAAGGTTGTGGTT....................................................................................... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAAGGGAACCGTCCCGAGCTTGAGCG........................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGGAACCGTCCCGAGCTTGA.............................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCCGAGCTTGAGCGTTGACTGG................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GCTGATCCCCTATGGGACTTG.......................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................AACCGTCCCGAGCTTGAGCGTT......................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CGAGCTTGAGCGTTGACTGGCGTAATGAA.......................... 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAATTATTTTTTTTCAAGGGAACCGT......................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GGGACTTGGGAGAATAAGGT.............................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12952:217571-217821 - dvi_9646 TAGCTCAATCCGGAAAACTAAAG-GCCA-----CTCTGTCAGACATGACGAGCAAGGTAAGGA-------------------------CTA-CCAGT--CGTCGATTATTCGTAATGGACCAAACTT--------------CAACAAGTAA-AAGGTTCTAGTCGGGAGCTCCCGACTAGGGGATACCCTGAACCCTC-TTATTC-------CAACACC--------AAATA----------------AA----TTAA-----TAAAAAAAAGTTCCC-----TTGGCAGGGCTCGAACTCGCAACTGACCGCATTACTTGCTGTCGTCTACTCAACAGCGACACC
droMoj3 scaffold_6496:16456345-16456552 + CAAATGG------GAAATCAGAATGTCATGTTCTTTTCTGAGGCGTGGCAGGCGAAGAATCAG-------------------------CTC-CTGTC--CAGGGACTGGACATAACAGAACGAACTTCTCTAATTTATATAAAACAAGTAACAAGGCTCCAGTCGAGACTGCTCGACTAGGAGATACCCTG----------------AACCC-----CC--------CAAGCTGATATTCGAATAGTTATTCGAATGAGCTATCGAAAAAA---------------------------------------------------------------------------
droGri2 scaffold_15203:4300877-4301068 + TGACCTGA--TGAATAAATAAAA-TCAA-----TTATGCCAG--ACAGTA-------AATTTATACCCTTCAGATATAAGACCGTCAACCA-TCAAT--TGAAATTTATTTGTAATC----------G-CTGATTAATA-ACAATAAGTAAAAATGCTCTAGTCGAATGAGCTCGACCACAAGATACCCTG----------------AACCCAGATGTC--------AAATA----------------AA----TTAC-----TCAAAGGCAG-------------------------------------------------------------------------
droWil2 scf2_1100000004830:209278-209332 + AGCAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAAA-----TAAAAAAA-ATTACATGCCCCGGGTGAGGCTCGAACT----------------------------------------CACGAC
dp5 XL_group1e:7181702-7181732 - TATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------CTGCACC--------AAATG----------------AA----ATAA-----TAAAAAAA---------------------------------------------------------------------------
droPer2 scaffold_831:4692-4728 - ATGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGTC--------CAATA----------------AA----TGAA-----AAAAAAAAAGTTGCC--------------------------------------------------------------------
droAna3 scaffold_13099:1277690-1277739 - CTGTAC-----------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------------TCATATCCAATAAATAAATA----------------AA----TAAA-----TAAATAAAAGTTGCT-----T--------------------------------------------------------------
droBip1 scf7180000392265:23578-23673 + CAAATTC---CACCAAAGTAAAT-TCCA-----ATTGA---------------------------------------------------------------------------------------------------------------------------------CGACCCCGACTATATTATACCCGG----------------TACCCATCTCTT--------CCACC------------AACAATTTAACTAA-----CCTATAAAGTTT-----------------------------------------------------------------------
droKik1 scf7180000302621:122302-122370 - CCAGGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGAGCACTTGGTATTCCAGGGGCAAGCACC--------AAATA----------------AA----TTAA-----TTAATAAAAGGGCCC--------------------------------------------------------------------
droEle1 scf7180000491353:41780-41825 - CTTAAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-TTAACC-------TAACCCC--------AAAAA----------------TA----GTAT-----TAAAAAAAAGT------------------------------------------------------------------------
droRho1 scf7180000766316:4004-4099 + TGGCCGA---CGGAAAACTAACC-GCCA-----CTTCGCACGAGGCAGCATGTGAAGTGGACG-------------------------CGATCCAATCCTGCCGTCTTTTCATATTCGACAGAAAT------------------------------------------------------------------------------------------------------------------------------------------GCAA------------------------------------------------------------------------------
droBia1 scf7180000301221:5114-5181 - TGAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACCAAAGATCTC-TACTAT-------CACTCTC--------CAATA----------------AA----TTAA-----TAAAAAAAAAACCCT-----T-------------------------------------------------------TAACGAG
droTak1 scf7180000412490:385-480 - TGGCCGA---CGGGAAACTAACA-GCCA-----CTTCGCACGAGGCAGCATGTGAAGTGGACA-------------------------CGATCCAATCCAGCCGTCTATTCATATTCGACAGAAAT------------------------------------------------------------------------------------------------------------------------------------------ACAA------------------------------------------------------------------------------
droEug1 scf7180000409528:321610-321622 - CAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGC
dm3 chr3L:15544992-15545005 + TTAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAC
droSec2 scaffold_6:3236269-3236299 + TTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------CGATACC--------AACTA----------------AA----TTAA-----TAAAA------------------------------------------------------------------------------
droYak3 3L:19371924-19371953 + ACTTTTT--------------------------------------------------------------------------------------------------------TTTTACAACTCAACT------------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------CAGCATC
droEre2 scaffold_4845:15961531-15961608 - AGTTTAGA------A-------------------------------------------------------------------------CTT-CAGCC--TTGGGACATTTCTTAATTTTTTGTATTTC---------------------------------------------------------------------------TT-------CAACATC--------AGAAA----------------AA----TTAA-----AAAAAAAAAGTT-----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAGCTCAATCCGGAAAACTAAAG-GCCA-----CTCTGTCAGACATGACGAGCAAGGTAAGGA-------------------------CTA-CCAGT--CGTCGATTATTCGTAATGGACCAAACTT--------------CAACAAGTAA-AAGGTTCTAGTCGGGAGCTCCCGACTAGGGGATACCCTGAACCCTC-TTATTC-------CAACACC--------AAATA----------------AA----TTAA-----TAAAAAAAAGTTCCC-----TTGGCAGGGCTCGAACTCGCAACTGACCGCATTACTTGCTGTCGTCTACTCAACAGCGACACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................TTACTTGCTGTCGTCTACTCAACAGC......2613.003000001000000000000000000000000100100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAG.......2412.002000000000000000000002000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTACTTGCTGTCGTCTACTCAACAG.......2512.002000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACTGACCGCATTACTTGCTGTCGT..................2532.006000001000200000000000000000030000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACCGCATTACTTGCTGTCGTCTACT.............2512.002000000000000000000000000000002000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTGCTGTCGTCTACTCAACAGCGAC...2512.002000000000000000000000000000020000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTACTTGCTGTCGTCTACT.............1911.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAGCGACA..2911.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CCGCATTACTTGCTGTCGTCTACTCAAC.........2811.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAGC......2511.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACCGCATTACTTGCTGTCGTCTA...............2311.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTGCTGTCGTCTACTCAACAGCGA....2411.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................TA-CCAGT--CGTCGATTATTCGTAATGGA...................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................TA-CCAGT--CGTCGATTATTCGTAATGG....................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CATTACTTGCTGTCGTCTACTCA...........2311.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTACTTGCTGTCGTCTACTCAACAGCGA....2811.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TCTACTCAACAGCGACACC1911.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TACTTGCTGTCGTCTACTCAACAGCG.....2611.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GCATTACTTGCTGTCGTCTACTCAAC.........2611.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATTACTTGCTGTCGTCTACTCAAC.........2411.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCT.......................24200.75150000000000000000000000000000110040000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTAC............................26200.7515005000000000000000000000200100200000005000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACTGACCGCATTACTTGCTGTCGTC.................2630.672000000000000000000000000000010010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTA.............................25200.50100000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATT..............................24200.459300001010000000000002000000000000000101000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACT...........................27200.357200000000000000000001000000002000000100000000000000000000000010
...........................................................................................................................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCTGTCGT..................2930.331000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGC.................................21200.306000000000000000000000000000033000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCTGTCG...................28200.306000003000000000000000000000000000000001200000000000000000000000
...........................................................................................................................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGCTGTC....................27200.306000000000000000000000000000050010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACC...........................27200.204200000000000000000000000000000200000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TGGCAGGGCTCGAACTCGCAACTG......................................24200.153000000000000000000000000000020100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TCGCAACTGACCGCATTACTTG.........................22200.153000000000000000000000000000002000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CGCAACTGACCGCATTACTTGCTGTCG...................27200.153000000000000000000000000001020000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCG..................................20200.153000000000000000000000000010000000000000200000000000000000000000
...........................................................................................................................................................................................................................................................................................................TCGCAACTGACCGCATTACTTGC........................23200.153000000000000000000000000000000300000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACTT..........................28200.102000000000000000000000000000200000000000000000000000000000000000
....................................................................................................................................................TAA-AAGGTTCTAGTCGGGAGC................................................................................................................................................................................21200.102100000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCC................................22200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CGAACTCGCAACTGACCGCATTACTTGC........................28200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AAAAGTTCCC-----TTGGCAGGGCTCGAAC...............................................26200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGGGCTCGAACTCGCAACTGACCGC.................................25200.051000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................CGGGAGCTCCCGACTAGGGGA..................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GGGCTCGAACTCGCAACTGACCGCA................................25200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TAAAAAAAAGTTCCC-----TTGGCAGGGCT....................................................26200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCCC-----TTGGCAGGGCTCGAACTCGC...........................................25200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCAT...............................23200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AGTTCCC-----TTGGCAGGGCTCGA.................................................21200.051000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCCC-----TTGGCAGGGCTCGAACT..............................................22200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTATC...........................27200.051000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GCTCGAACTCGCAACTGACCGC.................................22200.051000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACC...................................19200.051000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................ACAAGTAA-AAGGTTCTAGTCGGGA..................................................................................................................................................................................24200.051100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTGGCAGGGCTCGAACTCGCA..........................................21200.051000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACTTC.........................29200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CTCCCGACTAGGGGATACCCTGAACCCTC-TTAT...............................................................................................................................................33200.051000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................TCCC-----TTGGCAGGGCTCGAACTCGCA..........................................25200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CTCGCAACTGACCGCATTACTTGCTGTC....................28200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAACTCGCAACTGACCGCATTACT...........................24200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTCGAACTCGCAACTGACCGCATTACTC..........................28200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACTGACCGCATTACTTGCTGTC....................23200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CGAACTCGCAACTGACCGCATTAC............................24200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CGCAACTGACCGCATTACTTG.........................21200.051000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTGGCAGGGCTCGAACTCGCAACTGA.....................................26200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTGGCAGGGCTCGAACTCGCAACTGACC...................................28200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCCC-----TTGGCAGGGCTCGAACTCGC...........................................24200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TAAAAAAAAGTTCCC-----TTGGCAGGGCTCG..................................................28200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TGGCAGGGCTCGAACTCGCAAC........................................22200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AAAAAAGTTCCC-----TTGGCAGGGCTCGAA................................................27200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TCGAACTCGCAACTGACCGCATTACT...........................26200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CAGGGCTCGAACTCGCAACTGACCGCA................................27200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCCC-----TTGGCAGGGCTCGAAC...............................................20200.051000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CGAACTCGCAACTGAC....................................16200.051000000000000000000000000000000000000000000000000100000000000000
droMoj3
CAAATGG------GAAATCAGAATGTCATGTTCTTTTCTGAGGCGTGGCAGGCGAAGAATCAG-------------------------CTC-CTGTC--CAGGGACTGGACATAACAGAACGAACTTCTCTAATTTATATAAAACAAGTAACAAGGCTCCAGTCGAGACTGCTCGACTAGGAGATACCCTG----------------AACCC-----CC--------CAAGCTGATATTCGAATAGTTATTCGAATGAGCTATCGAAAAAA---------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................ACTAGGAGATACCCTG----------------AACCC-----.................................................................................................................................21200.90181100070
..................................................................................................................................................................TCGAGACTGCTCGACTAGGAGATACC..............................................................................................................................................................26200.65131300000
.............................................................................................................................................................................CGACTAGGAGATACCCTG----------------AACC.......................................................................................................................................22200.153000030
................................................................................................................................................................................CTAGGAGATACCCTG----------------AACCC-----C................................................................................................................................21200.102000020
..........................................................................................................................................................GGCTCCAGTCGAGACTGCTCG...........................................................................................................................................................................21200.051100000
........................................................................................................................................................AAGGCTCCAGTCGAGACTGCT.............................................................................................................................................................................21200.051000010
.............................................................................................................................................................TCCAGTCGAGACTGCTCGACT........................................................................................................................................................................21200.051000010
............................................................................................................................................................CTCCAGTCGAGACTGCTCGACTAG......................................................................................................................................................................24200.051100000
droGri2
TGACCTGA--TGAATAAATAAAA-TCAA-----TTATGCCAG--ACAGTA-------AATTTATACCCTTCAGATATAAGACCGTCAACCA-TCAAT--TGAAATTTATTTGTAATC----------G-CTGATTAATA-ACAATAAGTAAAAATGCTCTAGTCGAATGAGCTCGACCACAAGATACCCTG----------------AACCCAGATGTC--------AAATA----------------AA----TTAC-----TCAAAGGCAG-------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGCAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAAA-----TAAAAAAA-ATTACATGCCCCGGGTGAGGCTCGAACT----------------------------------------CACGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------CTGCACC--------AAATG----------------AA----ATAA-----TAAAAAAA---------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGTC--------CAATA----------------AA----TGAA-----AAAAAAAAAGTTGCC--------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CTGTAC-----------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------------TCATATCCAATAAATAAATA----------------AA----TAAA-----TAAATAAAAGTTGCT-----T--------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CAAATTC---CACCAAAGTAAAT-TCCA-----ATTGA---------------------------------------------------------------------------------------------------------------------------------CGACCCCGACTATATTATACCCGG----------------TACCCATCTCTT--------CCACC------------AACAATTTAACTAA-----CCTATAAAGTTT-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCAGGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGAGCACTTGGTATTCCAGGGGCAAGCACC--------AAATA----------------AA----TTAA-----TTAATAAAAGGGCCC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTTAAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-TTAACC-------TAACCCC--------AAAAA----------------TA----GTAT-----TAAAAAAAAGT------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGCCGA---CGGAAAACTAACC-GCCA-----CTTCGCACGAGGCAGCATGTGAAGTGGACG-------------------------CGATCCAATCCTGCCGTCTTTTCATATTCGACAGAAAT------------------------------------------------------------------------------------------------------------------------------------------GCAA------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACCAAAGATCTC-TACTAT-------CACTCTC--------CAATA----------------AA----TTAA-----TAAAAAAAAAACCCT-----T-------------------------------------------------------TAACGAGSizeHit CountTotal NormTotal
No Reads
droTak1
TGGCCGA---CGGGAAACTAACA-GCCA-----CTTCGCACGAGGCAGCATGTGAAGTGGACA-------------------------CGATCCAATCCAGCCGTCTATTCATATTCGACAGAAAT------------------------------------------------------------------------------------------------------------------------------------------ACAA------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCSizeHit CountTotal NormTotal
No Reads
dm3
TTAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSec2
TTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------CGATACC--------AACTA----------------AA----TTAA-----TAAAA------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACTTTTT--------------------------------------------------------------------------------------------------------TTTTACAACTCAACT------------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------CAGCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AGTTTAGA------A-------------------------------------------------------------------------CTT-CAGCC--TTGGGACATTTCTTAATTTTTTGTATTTC---------------------------------------------------------------------------TT-------CAACATC--------AGAAA----------------AA----TTAA-----AAAAAAAAAGTT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:56 PM