ID:

dvi_9615

 Coordinate:

scaffold_12942:55960-56110 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.3 -10.3 -10.1

Flybase annnotation

CDS [Dvir\GJ18415-cds]; exon [dvir_GLEANR_3025:1]; intron [Dvir\GJ18415-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAACAAAGCAACGCGTTCATTACCAAGATGATGTGGCACGAACCAAAAAGTGTGTGTTTTCATTTAAAATGACCTAACTATTGAATAATAATTTTAAGGTTGTACATTTGTAAATATTTTTGTAGACAAATCAACGATGATATCGTGTTTGCATGTGTGTGTGAATGTGTATAAGAATTCAGTAGATAAGTTGTATAAGTGACCCAGAATAAAGTGTAGTATTATCTCAAGACCGTAGCAAACAATAATA
*************************************************************************************************************************((.......(((.((..(((..((.....(((((((........)))))))...))..))))).)))......))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060658
140_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V116
male body
.........................................................................................................................TGTAGACAAATCAACGATGATATCGTGT...................................................................................................... 28 0 1 103.00 103 84 13 5 1 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAACAAT.... 27 0 1 52.00 52 35 12 5 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTA....................................................... 24 0 1 42.00 42 19 8 5 10 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATCGTG....................................................................................................... 27 0 1 32.00 32 23 7 2 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATCG......................................................................................................... 25 0 1 24.00 24 15 4 5 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAACAATA... 28 0 1 18.00 18 17 0 1 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTATA..................................................... 26 0 1 15.00 15 8 3 3 1 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTAT...................................................... 25 0 1 14.00 14 12 1 0 1 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGTTGTAC................................................................................................................................................. 27 0 1 13.00 13 10 3 0 0 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGTTTTCATT.......................................................................................................................................................................................... 26 0 1 12.00 12 7 4 1 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTATAAG................................................... 28 0 1 12.00 12 9 3 0 0 0 0 0 0
...................................................................................................................................TCAACGATGATATCGTGTTTGCATGTG............................................................................................. 27 0 1 7.00 7 5 1 1 0 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGTTGTACA................................................................................................................................................ 28 0 1 7.00 7 4 1 2 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTATAA.................................................... 27 0 1 6.00 6 5 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAACAA..... 26 0 1 6.00 6 5 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAAC....... 24 0 1 5.00 5 3 0 2 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAACA...... 25 0 1 4.00 4 1 1 2 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATC.......................................................................................................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATCGTCA...................................................................................................... 28 2 1 3.00 3 0 1 2 0 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGTTG.................................................................................................................................................... 24 0 1 3.00 3 2 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGC........... 20 0 1 3.00 3 1 0 1 1 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGT........................................................ 23 0 1 3.00 3 1 0 2 0 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGTTTTC............................................................................................................................................................................................. 23 0 1 3.00 3 2 1 0 0 0 0 0 0
...................................................................................................................................................................................TCAGTAGATAAGTTGTATAAGTGACCCA............................................ 28 0 1 3.00 3 2 0 0 1 0 0 0 0
..................................................................................................................................................................................TTCAGTAGATAAGTTGTATAAGTGA................................................ 25 0 1 3.00 3 2 0 0 1 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTT.......................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATAT........................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGTTGTA.................................................................................................................................................. 26 0 1 2.00 2 1 0 1 0 0 0 0 0
...................................................................................................................................TCAACGATGATATCGTGTTTGCATGT.............................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0
...................................................................................................................................TCAACGATGATATCGTGTTTGCATG............................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0
........................................GAACCAAAAAGTGTGTGTTTTCATT.......................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................AAGTGTGTGTTTTCATTTAAAATGACC................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................TGTAGAAAAATCAACGATGATATCGTG....................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAGCGATGATATCGTGT...................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCGCAAGACCGTAGCAAACAAT.... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTTG...................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................GACAAATCAACGATGATATCGTGTT..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATTG......................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................GACAAATCAACGATGATATCGTGT...................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAACAATC... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................TTGTAGACAAATCAACGATGATATCGTGT...................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................TTTCATTTAAAATGACCTAAC............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................TGAACCAAAAAGTGTGTGTTTTCATTT......................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTATCTCAAGACCGTAGCAAACAAT.... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
................................TGTGGCACGAACCAAAAAGTGTGCGT................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATCGTTAT..................................................................................................... 29 2 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................TAATTTTAAGGTTGTACA................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................AACCAAAAAGTGTGTGTT................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................................................................TTTAGACAAATCAACGATGATATCG......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAA......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATA............................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAA........ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGATGTACA................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TATAAGAATTCAGTAGATAAG............................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGTTT............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TTCAGTAGATAAGTTGTATAAGTGACC.............................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................GATGTGGCACGAACCAAAAAGTGTGT................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GAATTCAGTAGATAAGTTGT........................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCAAACCATA... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GAATTCAGTAGATAAGTTGTATAAGT.................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................CTGTAGACAAATCAACGATGATATCG......................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................TCAACGATGATATCGTATTTGCATG............................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGAAATCGTGT...................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TATTATCTCAAGACCGTAGCA.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGTTTTCA............................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................AATCAACGATGATATCGTGTT..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................CAAATCAACGATGATATCGTGTT..................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................ATTATCTCAAGACCGTAGCAAACAATA... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...........ACGCGTTCATTACCAAGATGATGTG....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGCTTTCATT.......................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTG......................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................ACCAAGATGATGTGGCACGAACCAAAT.......................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGTT................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGGTGTA.................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGATATCGTAT...................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................GTTTGCATGTGTGTGTGAATG................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................TCAACGATGATATCGTGTTTGCATGTGT............................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.................TCATTACCAAGATGATGTGGCAT................................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................TTGCATGTGTGTGTGAATGTG................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTC....................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0
.........CAACGCGTTCATTACCAAGAT............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTATAT.................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................TAAGACTTCAGTAGATAAGTTGTATAAG................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................TGCAGACAAATCAACGATGATATCG......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..AACAAAGCAACGCGTTCATTACCA................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TTCAGTAGATAAGTTGTATAAGTGACA.............................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................CAGTAGATAAGTTGTATAAGTGACCCA............................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCAGTAGATAAGTTGTATT..................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................TGCAGACAAATCAACGATGATATCGTGT...................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTATCTAAAGACCGTAGCAAACAAT.... 27 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................TAAGAATTCGGTAGATAAGTTGTATAAG................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
...ACAAAGCAACGCGTTCATTACCAAG............................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................ATTCAGTAGATAAGTTGTA....................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................CGAACCAAAAAGTGTGTGTTTTCAT........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTTGTATAAGTGACCCAGAATAAA..................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGTAGACAAATCAACGATGAT............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................TATTGAATAATAATTTTAAGGTTGTC.................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................AGACAAATCAACGATGATATCGTGT...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................GTGTTTGAATGTGTTTAAGGA......................................................................... 21 3 16 0.06 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTTGTTTCGTTGCGCAAGTAATGGTTCTACTACACCGTGCTTGGTTTTTCACACACAAAAGTAAATTTTACTGGATTGATAACTTATTATTAAAATTCCAACATGTAAACATTTATAAAAACATCTGTTTAGTTGCTACTATAGCACAAACGTACACACACACTTACACATATTCTTAAGTCATCTATTCAACATATTCACTGGGTCTTATTTCACATCATAATAGAGTTCTGGCATCGTTTGTTATTAT
*******************************************************((.......(((.((..(((..((.....(((((((........)))))))...))..))))).)))......))************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060658
140_ovaries_total
 SRR060657
140_testes_total
 M027
male body		 M047
female body
 V116
male body
.......................GGTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 26 0 1 197.00 197 166 14 14 3 0 0 0 0
...............................................................AAATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 26 0 1 34.00 34 23 6 5 0 0 0 0 0
..........................TCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 23 0 1 21.00 21 19 2 0 0 0 0 0 0
........................GTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 25 0 1 17.00 17 12 2 3 0 0 0 0 0
....................AATGGTTCTACTACACCGTGCTTGGTT............................................................................................................................................................................................................ 27 0 1 14.00 14 8 4 2 0 0 0 0 0
...........................................................................................................................................................................................................GGGTCTTATTTCACATCATAATAGAGT..................... 27 0 1 12.00 12 10 1 1 0 0 0 0 0
......................TGGTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 27 0 1 11.00 11 10 0 1 0 0 0 0 0
.....................ATGGTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 28 0 1 11.00 11 9 1 1 0 0 0 0 0
..............................................................TAAATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 27 0 1 11.00 11 5 5 1 0 0 0 0 0
......................................................................................................CATGTAAACATTTATAAAAACATCTGTTT........................................................................................................................ 29 0 1 6.00 6 5 1 0 0 0 0 0 0
....................AATGGTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 29 0 1 5.00 5 4 1 0 0 0 0 0 0
...........................CTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 22 0 1 5.00 5 3 0 1 1 0 0 0 0
.........................TTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 24 0 1 5.00 5 2 0 3 0 0 0 0 0
.......................GTTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 26 1 1 4.00 4 2 0 0 2 0 0 0 0
.....................................................................TACTGGATTGATAACTTATT.................................................................................................................................................................. 20 0 1 4.00 4 4 0 0 0 0 0 0 0
..TTGTTTCGTTGCGCAAGTA...................................................................................................................................................................................................................................... 19 0 1 3.00 3 0 0 0 1 2 0 0 0
............................................................................................................................................................................................................GGTCTTATTTCACATCATAATAGAGT..................... 26 0 1 3.00 3 1 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................AATAGAGTTCTGGCATCGTTTGTTAT... 26 0 1 3.00 3 0 0 2 1 0 0 0 0
..........................................................................................................................................................................................................TGGGTCTTATTTCACATCATAATAGAGT..................... 28 0 1 3.00 3 2 1 0 0 0 0 0 0
................................................................AATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 25 0 1 3.00 3 2 1 0 0 0 0 0 0
.............................................................GTAAATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGGTCTTATTTCACATCATAATAGAGT..................... 27 1 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................ATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 24 0 1 2.00 2 1 0 0 1 0 0 0 0
.......................GGTTCTACTACACCGTGCTT................................................................................................................................................................................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0 0
......................................................................ACTGGATTGATAACTTATT.................................................................................................................................................................. 19 0 1 2.00 2 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................TTATTTCACATCATAATAGAGT..................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATAGAGTTCTGGCATCGTTTGTTA.... 24 0 1 2.00 2 0 0 0 2 0 0 0 0
....................AATGGTTCTACTACACCGTGCTTGGTTT........................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTTATTTCACATCATAATAGAGT..................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
........................................................................................................TGTAAACATTTATAAAAACATCTGTTT........................................................................................................................ 27 0 1 2.00 2 1 1 0 0 0 0 0 0
...................TAATGGTTCTACTACACCGTGCTTGGTT............................................................................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................ATGGTTCTACTACACCGTGCTTGGTT............................................................................................................................................................................................................ 26 0 1 2.00 2 1 1 0 0 0 0 0 0
..............................................................AAAATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 27 1 1 2.00 2 1 1 0 0 0 0 0 0
.......................GGTTCTACTACACCGTGCTTGGTTT........................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTTATTTCACATCATAATAGAGT..................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................TTCTACTACACCGTGTTTGGTTTT.......................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCACATCATAATAGAGTTCTGGCATCGT.......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTTATTTCACATCATAATAGAGTTC................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................GGTTCTACTACACCGTGCTTGGTTTTC......................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................TATAAAAACATCTGTTTAGTTGCTACT.............................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
............................TACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........CGTTGCGCAAGTAATGGTTCTACTACA........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACTAGAGTTCTGGCATCGTTTGTTATT.. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CATCATAATAGAGTTCTGGCATCGTT......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
........CGTTGCGCAAGTAATGGTTCTACT........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................AAAGTAAATTTTACTGGATTGATAACTT..................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TAGAGTTCTGGCATCGTTTGTTATT.. 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................TTAGTTGCTACTATAGCACAAACGT................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.......TCGTTGCGCAAGTAATGGTTCTACTA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................AAATTTTACCGGATTGATAACTTATT.................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................CTGGTTCTACTACACCGTGCTTGGT............................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................AAATTTTACTAGATTGATAACTTATT.................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
..TTGTTTCGTTGCGCAAGTAA..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................ATAAAAACATCTGTTTAGTTGCTACT.............................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................TGCTTGGTTTTTCACACACAAAAGT............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................TGTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................TAAATTTTACTGGATTGATAACT...................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................GGTTTTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................TTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATTCACATCATAATAGAGTTCTGG................ 26 2 1 1.00 1 0 1 0 0 0 0 0 0
.......................GGTTCTGCTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................AAATTTTACTCGATTGATAACTTATT.................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................CTGGATTGATAACTTATT.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................TGTAAACATTTATAAAAACATCTGTT......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................TTATAAAAACATCTGTTTAGTTGCTA................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................GTGCTTGGTTTTTCACACACAAAA.............................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........CGTGGCGCAAGTAATGGTTCTA............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................TAATAGAGTTCTGGCATCGTTTGTTAT... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........CGTTGCGCAAGTAATGGTTCTA............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0
..TTGTTTCGTTGCGCAAGTAATGGTT................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................TCTACTACACCGTGCTTGGTTTC.......................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AAAAACATCTGTTTAGTTGCTACTAT............................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................AAAAATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGGTCTTATTTCACATCATAATAGAGTC.................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................TTACACATATTCTTAAGT..................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................GTAAACATTTATAAAAACATCTGTTT........................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................AAACATTTATAAAAACATCTGTTT........................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................ACACACACACTTACACATATTCTTAAGT..................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................GGTTCTATTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCAACATATTCACTGGGTCTTATTT..................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGGGTCTTATTTCACATCATAATAGAGT..................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................CGTGCTTGGTTTTTCACACACAAAAGT............................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TCACATCATAATAGAGTTCTGGCATCGTT......... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................TCTACTACACCGTTCTTGGTTTT.......................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................GTCTTATTTCACATCATAATAGAGT..................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TAGAGTTCTGGCATCGTTTGTTATTAT 27 0 1 1.00 1 0 0 0 1 0 0 0 0
....GTTTCGTTGCGCAAGTAATGGTTCTACT........................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................TCTGGCATCGTTTGTTATTAT 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................TGGTACTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTCACTGGGTCTTATTTCACATCAT............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................ACATTTTACTGGATTGATAACTTATT.................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................GGTTCTACTACACCGTGCTTGGTTCT.......................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTTATTTCACATCATAATAGAGTTCT.................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................TTGGTTCTACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................AACATTTATAAAAACATCTGTTT........................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................ACACATTTATAAAAACATCTGTTTAGT..................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................GGTTCTACTACACCGTGCTTGCTTTT.......................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................TCTACTACACCGTGCTTGGTTTTTC........................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGGGTCTTATTTCACATCATAATAG........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CACTGGGTCTTATTTCACATCATAAT.......................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTCTGGCATCGTTTGTTATTAT 22 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................ACTACACCGTGCTTGGTTTT.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...CCTTTCGTTGCGCAAGTAATGGTTCTAC............................................................................................................................................................................................................................ 28 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................ATCTGTTTAGTTGCTACTATAGCAC....................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................CCAGATTCCTAAGTCATCTA............................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................TCTGTCATCGTTTGTTGTTAT 21 2 2 0.50 1 0 0 0 0 0 1 0 0
.GGTGTTTCGTTGCGCAAG........................................................................................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 1 0
....................................TGTGCTTGGTGTTACACACA................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12942:55910-56160 + dvi_9615 AAAACAAAGCAACGCGTTCATTACCAAGATGATGTGG---CACGAACCAAAAAGTGTGTGTTTTCATTTAA-AA------------------------TGACCTAACTATTGAATAATAATTTTAAGGTTGTACATTTGTAAATATTTTTGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGTTTGCATGTGTGTG----TGAATGTGT-ATA--------------------------------AG-AATTCAGTAGATAAGTTGTATAAGTGACCCAGAATAAAG--TGTAGTATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAATAATA
droMoj3 scaffold_6328:4402438-4402611 + AAAACAAAACAACGCGTTCACTATAAAGACGACATTACGGCGCGTGCCAAAAAGTGTGTGATTTT----AT-TTTAACTAAATAAATAAATATTTCCTA------------------------AA------------------------------TATCA-ATATCCACTAATATGTTTCTTGAGAATACCTAACCATGG------------------------------------------------------------------------------------------------CAT----------------------------------------------------------AATTTGTTTTGGTATATCTGCATATTTGT--------------------------------------------------------------AA
droGri2 scaffold_14853:797795-797995 + AAGACAAAGCAACGCGTTCATTACAGAGATGATGTGG---CGCGTGCCAAAAAGTTTGTGTTTTC----TACTCAAAGTTAATGAATA--CATTTTATT------------------------GT------------------------------TATCA-AATTCAAATCACACACATTTTAA-AGAACCAAACCATCAAATACCTTTAA---------------------AGTGTGTGTGTGTGTGTG----TGAATGTGTGATG--------------------------------AG-TGTGTTTTAAATAATGT---------------------------------------------------------------------------------------------GTT---------------------------------TA
droWil2 scf2_1100000004909:2704620-2704755 + GAATAACAAA--TAAATAAATTGTACATACAATGTA-------------------------------------------------------------------------------------TGTATGTATGTAAG-------------------------------------------------------------------------------------------------TGTGTATGCATGTGTGTG----TGTAT---------------------------------------------------------------------------------------------------------------------------GTATGTACATTTATTTATA---AATAAAAACGAATATAAATTATCATAAAAGTTTGTGGACAATTTTG
dp5 Unknown_group_158:17576-17701 + CAAGAGCTAT---GTGCATA--------------------------------------------CATATAT-AT------------------------GGATGTAAATGTAAAATAATAATCATAAATATGTAAATAAATAAACATTATATAGT----------------------------------------------------------------------------------------------------------------------------------ATGTATAAAATTTAT----------------------------------------------------------AATTTATACATGTGTATATGTAT--ATAT--------------------------------------------------------------GT
droPer2 scaffold_12:993222-993349 + TATGCACATTTGTGTATGTAATTCAACAAAGGGATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCATGTGTGTGTGTGTGTGTGT-----AAGAGCGAGCAAATCTTG---------------CA-AATCTAAAGTTCA------------------------AG--TGTAATTGCATTTGAAGAG-----------------AGGCTGC------------------------------------------------------------AACA
droAna3 scaffold_13248:3995593-3995674 + AAAATAAATGAAA-TGCT--------------------------------------------------------------------------------T------------------------AA------------------------------AATTA-ATTTCAAAAAATGACTTTTTCGAAAAAG-------------------------------------------CGTGTTTGTGTGTGTGTG----TGTGT---------------------------------------------------------------------------------------------------------------------------GTGT--------------------------------------------------------------GT
droBip1 scf7180000395454:55380-55459 + TTTTTTTTAAGGTCTG------------------------------------------------------------------------------------GTTTTGTTTTTAGGTAATAGTTTTAGAGTAATGGCTTTGTAAATATTTTTAAAA----------------------------------------------------------GTAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC
droKik1 scf7180000302549:9554-9662 + TGTGAATTTGTGTTTATCTCAGTG-------------------------AAAACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAGACAATTAATAGTGTTTGTGTGTGTGTG----TATAGGTAT-AGA--------------------------------AAAATTGAA---------------------GTAAGTTTAGTGTA-------------------------------------AGTT----------------------------ATA---------------------------------CA
droFic1 scf7180000453924:1254085-1254148 - AGGACCAAGCAACGCGTCCATTACCACCACGATGTGATAT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGGAAATGAGTTAGTTTT-----------------------TA
droEle1 scf7180000486864:11706-11844 - AAAATCATC----------------------------------------------------------------------------------------------TT----AATATCAATAATTTTAAGCATATACACTTATAAACCGTTTTTTAGATGTTGCACGTGCACATGCACGTTTT---------------------------TTTATGTA---------------------TATACATATGT-----------------TT----------------------------------------------------------ATATATTTGAGATA------------------------------------------AGCTAC---------------AGTGAATTAAAATT---------------------------------AA
droRho1 scf7180000779917:301410-301490 - AAACTTGTC----------------------------------------------------------------------------------------------TAGCTTTCAAATCTTGATTTTAAAGTTGTACACTTGTTAAGATTTTTAAAT----------------------------------------------------------------T-----------------------------------------------------------------AATTCTAAAAT------------------------------------------------------------------------------------TGTCTGC--------------------------------------------------------------AT
droBia1 scf7180000301070:807-907 + CATTTATTCCA--------------TAAAAAGTATAC---CGCGTATCGAAAATAGTTA----TCATATGA-TA------------------------AAACTTAATTATTGAATATTTATTCACTGTGTATACTCTTTTAAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droTak1 scf7180000415253:9804-9890 + AAAGGTTTTCCTTTCATTCAAAAC---------AAGAAAT--T-----------------------------------------------------------------TGAAAACAATAAATTCAAATTTACAAACAAGTAAACATTTTTGTGC----------------------------------------------------------GCAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------AA
droEug1 scf7180000408987:345492-345562 + ACTCAACCA----------------------------------------------------------------------------------------------------GCGAAGAGCAGTTTTAAGTGGATGCATTTGTCAATATTATTTCAA----------------------------------------------------------CCA---------------------TTTGCATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------TG
dm3 chr3L:18085216-18085301 + AACACACAACAATTTGTGAAGTATTAAGATAATGTAG---AATATTAGAAAAGGTATATGTTTTC----AG------------------------------------------------------TTTT------------------------------------------------------------CCTAACTATCAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------TA
droSim2 2l:3138783-3138854 - AGGACCAAACAGCGGGTCCATTACCACCACGATGTGATAT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGGAAATGAGTTAGTTTCGCATTAAA---------------AT
droSec2 scaffold_5:1421619-1421689 - AGGACCAAACAGCGCGTCCATTACCACCACGATGTGATAT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGGAAATGAGTTAGTTTCGCATTCA----------------AA
droYak3 2L:21484092-21484195 + TTCCTATTTAA----------AAA----AAA-AGGA-------------------------------------------------------------------------ATACGTGACAAATTTAAAATTTTGCGTTTATAAATATTTTTATAA---------------------------------------------------------------------------------------------------------------------TAAGCAAT-----AACTACAAAGT------------------------------------------------------------------------------------TATTTT-------------------TCTAGTACGTG---------------------------------TG
droEre2 scaffold_4690:18231685-18231792 + GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTG----TGTGTGTAC-ATA--------------------------------CA-CATTTCATATATAAATGTAGTCACATAGCCAATATAACGCAAGTCGGATAATGCAAAACA------------------------------------------GAACACAA-----------------------------ACGAAAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAAACAAAGCAACGCGTTCATTACCAAGATGATGTGG---CACGAACCAAAAAGTGTGTGTTTTCATTTAA-AA------------------------TGACCTAACTATTGAATAATAATTTTAAGGTTGTACATTTGTAAATATTTTTGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGTTTGCATGTGTGTG----TGAATGTGT-ATA--------------------------------AG-AATTCAGTAGATAAGTTGTATAAGTGACCCAGAATAAAG--TGTAGTATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAATAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGT.....................................................................................................................................................................................................................281103.0010300000000100000000000000001300050000840000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAAT....27152.005200000000000000000000000001200050000350000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTA................................................................................................................................24142.004200000000100000000000000000800050000190000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTG......................................................................................................................................................................................................................27132.00320000000000000000000000000700020000230000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCG........................................................................................................................................................................................................................25124.00240000000000000000000000000400050000150000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAATA...28118.00180000000000000000000000000000010000170000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTATA..............................................................................................................................26115.0015000000001000000000000000030003000080000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTAT...............................................................................................................................25114.00140000000010000000000000000100000000120000000000000000000000000000
...........................................................................................................TATTGAATAATAATTTTAAGGTTGTAC............................................................................................................................................................................................................................................................................................................................27113.00130000000000000000000000000300000000100000000000000000000000000000
..........................................CGAACCAAAAAGTGTGTGTTTTCATT..............................................................................................................................................................................................................................................................................................................................................................................................26112.0012000000000000000000000000040001000070000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTATAAG............................................................................................................................28112.0012000000000000000000000000030000000090000000000000000000000000000
.........................................................................................................................................................................................................................TCAACGATGAT--ATCGTGTTTGCATGTG............................................................................................................................................................................................................2717.007000000000000000000000000010001000050000000000000000000000000000
...........................................................................................................TATTGAATAATAATTTTAAGGTTGTACA...........................................................................................................................................................................................................................................................................................................................2817.007000000000000000000000000010002000040000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTATAA.............................................................................................................................2716.006000000000000000000000000000001000050000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAA.....2616.006000000000000000000000000000001000050000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------AC.......2415.005000000000000000000000000000002000030000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACA......2514.004000000000000000000000000010002000010000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATC.........................................................................................................................................................................................................................2413.003000000000000000000000000010000000020000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTCA.....................................................................................................................................................................................................................2813.003000000000000000000000000010002000000000000000000000000000000000
...........................................................................................................TATTGAATAATAATTTTAAGGTTG...............................................................................................................................................................................................................................................................................................................................2413.003000000000000000000000000000001000020000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGC........................................2013.003000000001000000000000000000001000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGT.................................................................................................................................2313.003000000000000000000000000000002000010000000000000000000000000000
..........................................CGAACCAAAAAGTGTGTGTTTTC.................................................................................................................................................................................................................................................................................................................................................................................................2313.003000000000000000000000000010000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCAGTAGATAAGTTGTATAAGTGACCCA.....................................................................................................................2813.003000000001000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTCAGTAGATAAGTTGTATAAGTGA.........................................................................................................................2513.003000000001000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTT...................................................................................................................................2112.002000000000000000000000000010000000010000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--AT..........................................................................................................................................................................................................................2312.002000000000000000000000000000000000020000000000000000000000000000
...........................................................................................................TATTGAATAATAATTTTAAGGTTGTA.............................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000001000010000000000000000000000000000
.........................................................................................................................................................................................................................TCAACGATGAT--ATCGTGTTTGCATGT.............................................................................................................................................................................................................2612.002000000000000000000000000010000000010000000000000000000000000000
.........................................................................................................................................................................................................................TCAACGATGAT--ATCGTGTTTGCATG..............................................................................................................................................................................................................2512.002000000000000000000000000010000000010000000000000000000000000000
...........................................GAACCAAAAAGTGTGTGTTTTCATT..............................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000020000000000000000000000000000
...................................................AAGTGTGTGTTTTCATTTAA-AA------------------------TGACC...........................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTTG...............................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................G----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGTT....................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................G----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGT.....................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAATC...2811.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................TTGTAG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGT.....................................................................................................................................................................................................................2911.001000000000000000000000000000000000010000000000000000000000000000
.............................................................TTTCATTTAA-AA------------------------TGACCTAAC.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................TAATTTTAAGGTTGTACA...........................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
............................................AACCAAAAAGTGTGTGTT....................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------.........2211.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--A...........................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------A........2311.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................T-ATA--------------------------------AG-AATTCAGTAGATAAG.....................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
..........................................CGAACCAAAAAGTGTGTGTTT...................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTCAGTAGATAAGTTGTATAAGTGACC.......................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..............................GATGTGG---CACGAACCAAAAAGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................G-AATTCAGTAGATAAGTTGT.................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................G-AATTCAGTAGATAAGTTGTATAAGT...........................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTATCTCAAGAC------------------------------------------CGTAGCA.......................................2111.001000000000000000000000000000000000010000000000000000000000000000
..........................................CGAACCAAAAAGTGTGTGTTTTCA................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................AATCAACGATGAT--ATCGTGTT....................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................CAAATCAACGATGAT--ATCGTGTT....................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTATCTCAAGAC------------------------------------------CGTAGCAA-----------------------------ACAATA...2711.001000000000000000000000000010000000000000000000000000000000000000
...........ACGCGTTCATTACCAAGATGATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTG..................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
......................ACCAAGATGATGTGG---CACGAACCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
..........................................CGAACCAAAAAGTGTGTGTT....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................GTTTGCATGTGTGTG----TGAATG..............................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................TCAACGATGAT--ATCGTGTTTGCATGTGT...........................................................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
.................TCATTACCAAGATGATGTGG---CAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTGCATGTGTGTG----TGAATGTG............................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTC................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.........CAACGCGTTCATTACCAAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTATAT.............................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
..AACAAAGCAACGCGTTCATTACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTCAGTAGATAAGTTGTATAAGTGACA.......................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CAGTAGATAAGTTGTATAAGTGACCCA.....................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................TA--------------------------------AG-AATTCAGTAGATAAGTTGTATT..............................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
...ACAAAGCAACGCGTTCATTACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATTCAGTAGATAAGTTGTA................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
..........................................CGAACCAAAAAGTGTGTGTTTTCAT...............................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GTTGTATAAGTGACCCAGAATAAA..............................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................TGTAG----------------------------------------------------------ACAAATCAACGATGAT--............................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................TATTGAATAATAATTTTAAGGTTGTC.............................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................AG----------------------------------------------------------ACAAATCAACGATGAT--ATCGTGT.....................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
AAAACAAAACAACGCGTTCACTATAAAGACGACATTACGGCGCGTGCCAAAAAGTGTGTGATTTT----AT-TTTAACTAAATAAATAAATATTTCCTA------------------------AA------------------------------TATCA-ATATCCACTAATATGTTTCTTGAGAATACCTAACCATGG------------------------------------------------------------------------------------------------CAT----------------------------------------------------------AATTTGTTTTGGTATATCTGCATATTTGT--------------------------------------------------------------AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAGACAAAGCAACGCGTTCATTACAGAGATGATGTGG---CGCGTGCCAAAAAGTTTGTGTTTTC----TACTCAAAGTTAATGAATA--CATTTTATT------------------------GT------------------------------TATCA-AATTCAAATCACACACATTTTAA-AGAACCAAACCATCAAATACCTTTAA---------------------AGTGTGTGTGTGTGTGTG----TGAATGTGTGATG--------------------------------AG-TGTGTTTTAAATAATGT---------------------------------------------------------------------------------------------GTT---------------------------------TASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................AA---------------------AGTGTGTGTGTGTGTGTG----T...................................................................................................................................................................................................21200.05101
droWil2
GAATAACAAA--TAAATAAATTGTACATACAATGTA-------------------------------------------------------------------------------------TGTATGTATGTAAG-------------------------------------------------------------------------------------------------TGTGTATGCATGTGTGTG----TGTAT---------------------------------------------------------------------------------------------------------------------------GTATGTACATTTATTTATA---AATAAAAACGAATATAAATTATCATAAAAGTTTGTGGACAATTTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CAAGAGCTAT---GTGCATA--------------------------------------------CATATAT-AT------------------------GGATGTAAATGTAAAATAATAATCATAAATATGTAAATAAATAAACATTATATAGT----------------------------------------------------------------------------------------------------------------------------------ATGTATAAAATTTAT----------------------------------------------------------AATTTATACATGTGTATATGTAT--ATAT--------------------------------------------------------------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TATGCACATTTGTGTATGTAATTCAACAAAGGGATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCATGTGTGTGTGTGTGTGTGT-----AAGAGCGAGCAAATCTTG---------------CA-AATCTAAAGTTCA------------------------AG--TGTAATTGCATTTGAAGAG-----------------AGGCTGC------------------------------------------------------------AACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAAATAAATGAAA-TGCT--------------------------------------------------------------------------------T------------------------AA------------------------------AATTA-ATTTCAAAAAATGACTTTTTCGAAAAAG-------------------------------------------CGTGTTTGTGTGTGTGTG----TGTGT---------------------------------------------------------------------------------------------------------------------------GTGT--------------------------------------------------------------GTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTTTTTTAAGGTCTG------------------------------------------------------------------------------------GTTTTGTTTTTAGGTAATAGTTTTAGAGTAATGGCTTTGTAAATATTTTTAAAA----------------------------------------------------------GTAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotal
No Reads
droKik1
TGTGAATTTGTGTTTATCTCAGTG-------------------------AAAACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAGACAATTAATAGTGTTTGTGTGTGTGTG----TATAGGTAT-AGA--------------------------------AAAATTGAA---------------------GTAAGTTTAGTGTA-------------------------------------AGTT----------------------------ATA---------------------------------CASizeHit CountTotal NormTotal
No Reads
droFic1
AGGACCAAGCAACGCGTCCATTACCACCACGATGTGATAT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGGAAATGAGTTAGTTTT-----------------------TASizeHit CountTotal NormTotal
No Reads
droEle1
AAAATCATC----------------------------------------------------------------------------------------------TT----AATATCAATAATTTTAAGCATATACACTTATAAACCGTTTTTTAGATGTTGCACGTGCACATGCACGTTTT---------------------------TTTATGTA---------------------TATACATATGT-----------------TT----------------------------------------------------------ATATATTTGAGATA------------------------------------------AGCTAC---------------AGTGAATTAAAATT---------------------------------AASizeHit CountTotal NormTotal
No Reads
droRho1
AAACTTGTC----------------------------------------------------------------------------------------------TAGCTTTCAAATCTTGATTTTAAAGTTGTACACTTGTTAAGATTTTTAAAT----------------------------------------------------------------T-----------------------------------------------------------------AATTCTAAAAT------------------------------------------------------------------------------------TGTCTGC--------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droBia1
CATTTATTCCA--------------TAAAAAGTATAC---CGCGTATCGAAAATAGTTA----TCATATGA-TA------------------------AAACTTAATTATTGAATATTTATTCACTGTGTATACTCTTTTAAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droTak1
AAAGGTTTTCCTTTCATTCAAAAC---------AAGAAAT--T-----------------------------------------------------------------TGAAAACAATAAATTCAAATTTACAAACAAGTAAACATTTTTGTGC----------------------------------------------------------GCAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------AASizeHit CountTotal NormTotal
No Reads
droEug1
ACTCAACCA----------------------------------------------------------------------------------------------------GCGAAGAGCAGTTTTAAGTGGATGCATTTGTCAATATTATTTCAA----------------------------------------------------------CCA---------------------TTTGCATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------TGSizeHit CountTotal NormTotal
No Reads
dm3
AACACACAACAATTTGTGAAGTATTAAGATAATGTAG---AATATTAGAAAAGGTATATGTTTTC----AG------------------------------------------------------TTTT------------------------------------------------------------CCTAACTATCAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------TASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
AGGACCAAACAGCGGGTCCATTACCACCACGATGTGATAT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGGAAATGAGTTAGTTTCGCATTAAA---------------ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AGGACCAAACAGCGCGTCCATTACCACCACGATGTGATAT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGGAAATGAGTTAGTTTCGCATTCA----------------AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTCCTATTTAA----------AAA----AAA-AGGA-------------------------------------------------------------------------ATACGTGACAAATTTAAAATTTTGCGTTTATAAATATTTTTATAA---------------------------------------------------------------------------------------------------------------------TAAGCAAT-----AACTACAAAGT------------------------------------------------------------------------------------TATTTT-------------------TCTAGTACGTG---------------------------------TGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTG----TGTGTGTAC-ATA--------------------------------CA-CATTTCATATATAAATGTAGTCACATAGCCAATATAACGCAAGTCGGATAATGCAAAACA------------------------------------------GAACACAA-----------------------------ACGAAAATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:21 PM