dvi_9601

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGCTCAGTTCCACGAAATACATGACCCTTAAAATACGAAAAGGAGGATGAGATTGGCTTCTTGCACAAGGCATAGGCTTACGGAAGGAACAAAATAAAGTACGCAGCCATCATCACTTATGCGGAACCCAAATATTTAGATCAAGTTCACGATCTTATTCAAAATGAGCCTCAAACAAATCCACACACTACCTTCGAACAGGTCTTTCTTAAAAATTTCTCTGAGTCAGAGGTATCACGCCTCGACAAACC ************************************************..((((.((((.(((.(((..((.((((..((...................)).))))...))..))).))))))).))))......(((((........)))))..............................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060676 9xArg_ovaries_total	SRR060659 Argentina_testes_total	SRR060686 Argx9_0-2h_embryos_total
..............................................................................................................................................................................................................TCTTAAAAATTTCTCTGAGTC........................	21	0	2	0.50	1	0	1	0	0
.................................................................................................................................AAATATTTAGATCAAGTTCAC.....................................................................................................	21	0	2	0.50	1	1	0	0	0
....................................GAAACTGAGGATGAGATT.....................................................................................................................................................................................................	18	2	13	0.08	1	0	0	1	0
....................................GAAAAGGAGGAAGAGATA.....................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	1

ACGAGTCAAGGTGCTTTATGTACTGGGAATTTTATGCTTTTCCTCCTACTCTAACCGAAGAACGTGTTCCGTATCCGAATGCCTTCCTTGTTTTATTTCATGCGTCGGTAGTAGTGAATACGCCTTGGGTTTATAAATCTAGTTCAAGTGCTAGAATAAGTTTTACTCGGAGTTTGTTTAGGTGTGTGATGGAAGCTTGTCCAGAAAGAATTTTTAAAGAGACTCAGTCTCCATAGTGCGGAGCTGTTTGG ************************************************..((((.((((.(((.(((..((.((((..((...................)).))))...))..))).))))))).))))......(((((........)))))..............................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060654 160x9_ovaries_total	SRR060689 160x9_testes_total	SRR060673 9_ovaries_total	V047 embryo	V116 male body	V053 head	SRR060686 Argx9_0-2h_embryos_total	SRR060674 9x140_ovaries_total	SRR060681 Argx9_testes_total	SRR060685 9xArg_0-2h_embryos_total
.....................................................ACCGAAGAACGTGTTCCGTAT.................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTTAGGGGTGTGATGGTAGC.......................................................	20	2	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTTAGGGGTGTGATGGTAG........................................................	19	2	3	0.33	1	0	0	1	0	0	0	0	0	0	0
..........GTGATTTATGGGCTGGGAAT.............................................................................................................................................................................................................................	20	3	6	0.17	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................CGGAAGTAGTGAGTGCGCC...............................................................................................................................	19	3	7	0.14	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................GTCTTGGGTTTCTGAATCTA..............................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	1	0	0	0
........AGTTGCTTTAGGTACTGGGG...............................................................................................................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................AAAGAATTTTCAGTGAGACT...........................	20	3	18	0.06	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................TTAAAGCGACTCAGGGTCC...................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...............................................................GGGTTCCGTAGCCGCATG..........................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........CGGCTTCATGTACTGGGA...............................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAATAGTGAAGACGCATTG............................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12936:574372-574622 +	dvi_9601	TGCTCAGTTCCACGAAATACATGACCCTTAAAATACGAAAAGGAGGATGAGATTGGCTTCTTGCACAAGGCATAGGCTTACGGAAGGAACAAAATAAAGTACGCAGCCATCATCACTTATGCGGAACCCAAATATTTAGATCAAGTTCACGATCTTATTCAAAATGAGCCTCAAACAAATCCACACACTACCTTCGAACAGGTCTTTCTTAAAAATTTCTCTGAGTCAGAGGTATCACGCCTCGACAAACC
droMoj3	scaffold_1712:2278-2480 +		G-----------------------------------------------AAGGCTGGGTTGAGCTGCAGGGCATCGGTACGCGTAAAGAGCAC-GAGAAGTACACTGCCGTTATAACCTACGCAGATCCAAAATATCTGGAGCAAGTGCATGATCTAGTAGTGAACGAGCCAACTTCAAATCCATACACCACGTTGAAACAATCAATTCTCGCCAAATTCGCAGAATCTGAAATGGTTCGTCTTGATAAGCT
droPer2	scaffold_7:4418789-4418828 +		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATCCAGATAAAGCTTTTGAAAAGGTCTTTCTGAAA--------------------------------------
droAna3	scaffold_13333:210760-210997 +		CAATCACAAACATAGAAATGTTCTTCACGAAGTTAG------------AAAGTTGGTTCGCACTACAAGGACTTGGTGCACGAAAAGAACAG-GAAAAGTTCGCTGCAGTCATCGCCTACGCAGACCCCAAATACCTGGAACAAGTACACGATCTTGTAAACAATCCACCCGAAACAGCCCCTTATTCCACCTTAAAGGAAGCGATCCTTTCAAAGTTTACTGACTCGGAAATGGTACGTTTGGACAGACT
droKik1	scf7180000299059:4881-5077 +		-----------------------------------------------------TGGTTTTTGCTGCAAGGCCTTGGCGCACGCAAAGAACAA-GAGAAATATGCGGCAGTAATCGCGTACGCCGATCCCAAATACCTCGATCAAGTGCACGATCTTGTCAATAACCCACCACAAACGAATCCGTACTCCACACTTAAACAAGCAATTTTGTCTAAATTTGCCGAATCAGAGATGGTGCGCCTCGACAGGCT
droRho1	scf7180000778177:2703-2904 -		G-----------------------------------------------AGAGCTGGTTCATGCTGCAAGGCCTAGGTGCACGCAAAGAGCAA-GAAAAATACGCAGCAGTAATCGCGTACGCTGATCCCAAATACCTGGATCAAGTGCACG-CCTTGTCAACAACCCACCACAAACGAATCCGTACTCCACCTTTAAACAAGCCATTAAGTCCAAATTCGCAGAATCAGAGATGGTGTGCCTCGACAGACT
droBia1	scf7180000302386:11915-12111 -		-----------------------------------------------------TGGTTTTTGCTGCAAGGCCTTGGTGCACGCAAGGAACAA-GAGAAATACGCAGCAGTAATCGCGAATGCTGATCCCAAATACCTGGATCAAGTGCACGACCTTGTCAATAACCCACCACAAACCAACCCGTACTCAACCCTTAAGCAAGCAATTTTGTCCAAATTTGCCGAATCAGAGATGGTCCGCCTCGACAGACT
droTak1	scf7180000414611:5988-6184 +		-----------------------------------------------------TGGTTTTTGCTGCAAGGCCTCGGTGCACGCAAAGAGCAA-GAGAAGTACGCAGCAGTAATTGCATACGCTGACCCCAAATACCTCGATCAAGTGCACGATCTTGTCAATAACCCACCGAAAACAAATCCGTACTCCACACTCAAACAAGCAATTTTGTCTAAATTTGCCGAATCAGAGATGGTGCGCCTCGACAGACT
droSim2	2l:23018273-23018352 +		A--------------------------------------------------------------------------------------ACGAA-AAAAAGTACAGAGTTGTAATTGACTATAGGAAATTCGAAATCATTGATCAAGGGTTCGATTCTATTAAATAGGA------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TGCTCAGTTCCACGAAATACATGACCCTTAAAATACGAAAAGGAGGATGAGATTGGCTTCTTGCACAAGGCATAGGCTTACGGAAGGAACAAAATAAAGTACGCAGCCATCATCACTTATGCGGAACCCAAATATTTAGATCAAGTTCACGATCTTATTCAAAATGAGCCTCAAACAAATCCACACACTACCTTCGAACAGGTCTTTCTTAAAAATTTCTCTGAGTCAGAGGTATCACGCCTCGACAAACC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................TCTTAAAAATTTCTCTGAGTC........................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AAATATTTAGATCAAGTTCAC.....................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G-----------------------------------------------AAGGCTGGGTTGAGCTGCAGGGCATCGGTACGCGTAAAGAGCAC-GAGAAGTACACTGCCGTTATAACCTACGCAGATCCAAAATATCTGGAGCAAGTGCATGATCTAGTAGTGAACGAGCCAACTTCAAATCCATACACCACGTTGAAACAATCAATTCTCGCCAAATTCGCAGAATCTGAAATGGTTCGTCTTGATAAGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................GAGAAGTACACTGCCGTTATAACC......................................................................................................................................	24	7	0.57	4	3	0	0	0	1	0
.............................................................................................GAGAAGTACACTGCCGTTATAACCTAC...................................................................................................................................	27	7	0.43	3	3	0	0	0	0	0
.....................................................................................................................................................TGATCTAGTAGTGAACGAGCCA................................................................................	22	8	0.38	3	3	0	0	0	0	0
.................................................................................................................................................................................AATCCATACACCACGTTGAAACAATC................................................	26	4	0.25	1	1	0	0	0	0	0
.....................................................................................................................................................TGATCTAGTAGTGAACGAGCCAAC..............................................................................	24	8	0.25	2	1	0	0	0	1	0
.................................................................................................................................................................................AATCCATACACCACGTTGAAAC....................................................	22	4	0.25	1	1	0	0	0	0	0
.................................................................................................................................................................................AATCCATACACCACGTTGAAACAATCAT..............................................	28	4	0.25	1	1	0	0	0	0	0
..................................................................................................................................................GCATGATCTAGTAGTGAACGAGC..................................................................................	23	8	0.25	2	1	0	0	0	0	1
.......................................................................................AGCAC-GAGAAGTACACTGCCGTTATAACC......................................................................................................................................	29	7	0.14	1	1	0	0	0	0	0
....................................................................................AAGAGCAC-GAGAAGTACACTGC................................................................................................................................................	22	7	0.14	1	0	0	0	0	1	0
.............................................................................................GAGAAGTACACTGCCGTTATAACCTA....................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................................................AAACAATCAATTCTCGCCAAATTCGCCC............................	28	7	0.14	1	1	0	0	0	0	0
..............................................................................................AGAAGTACACTGCCGTTATC.........................................................................................................................................	20	7	0.14	1	1	0	0	0	0	0
.......................................................................................AGCAC-GAGAAGTACACTGCCGTTAT..........................................................................................................................................	25	7	0.14	1	0	0	0	0	1	0
...............................................................................................GAAGTACACTGCCGTTATAACC......................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
.....................................................................................................................................................TGATCTAGTAGTGAACGAGCC.................................................................................	21	8	0.13	1	0	0	0	0	1	0
...........................................................................................................................................AGCAAGTGCATGATCTAGTAGTGAGTA.....................................................................................	27	8	0.13	1	0	0	0	0	0	1
.....................................................................................................................................................TGATCTAGTAGTGAACGAGCCAACA.............................................................................	25	8	0.13	1	0	0	0	0	0	1
.....................................................................................................................................................TGATCTAGTAGTGAACGAGCCAA...............................................................................	23	8	0.13	1	0	0	0	0	0	1
.....................................................................................................................................................TGATCTAGTAGTGAACGAGCCAACTTC...........................................................................	27	8	0.13	1	1	0	0	0	0	0

droPer2

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATCCAGATAAAGCTTTTGAAAAGGTCTTTCTGAAA--------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................TAAAGCTTTTGAAAAGGTCTTTCTGAAA--------------------------------------	28	12	0.17	2	0	2	0	0	0	0
..........................................................................................................................................................................................AAAGCTTTTGAAAAGGTCTTTCTGAAA--------------------------------------	27	12	0.08	1	0	1	0	0	0	0

droAna3

CAATCACAAACATAGAAATGTTCTTCACGAAGTTAG------------AAAGTTGGTTCGCACTACAAGGACTTGGTGCACGAAAAGAACAG-GAAAAGTTCGCTGCAGTCATCGCCTACGCAGACCCCAAATACCTGGAACAAGTACACGATCTTGTAAACAATCCACCCGAAACAGCCCCTTATTCCACCTTAAAGGAAGCGATCCTTTCAAAGTTTACTGACTCGGAAATGGTACGTTTGGACAGACT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................CTCGGAAATGGTACGTTTGGAC.....	22	20	0.45	9	5	4	0	0	0	0
.........................CACGAAGTTAG------------AAAGTTGGTTCGCAC............................................................................................................................................................................................	26	20	0.25	5	0	5	0	0	0	0
.........................CACGAAGTTAG------------AAAGTTGGTTCGC..............................................................................................................................................................................................	24	20	0.20	4	1	3	0	0	0	0
........................................................................................................................................................................CCCGAAACAGCCCCTTATTCCACC...........................................................	24	6	0.17	1	0	1	0	0	0	0
..................................................................................................................................AATACCTGGAACAAGTACACGATCTTG..............................................................................................	27	20	0.15	3	2	1	0	0	0	0
...................................................................................................................................................................ATCCACCCGAAACAGCCCCTTATTCC..............................................................	26	8	0.13	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CTCGGAAATGGTACGTTTGGACAGAC.	26	9	0.11	1	1	0	0	0	0	0
...............................................................TACAAGGACTTGGTGCACGAAAAGAA..................................................................................................................................................................	26	20	0.10	2	1	1	0	0	0	0
..............................................................................................................CATCGCCTACGCAGACCCCAAATACC...................................................................................................................	26	20	0.10	2	1	1	0	0	0	0
.........................CACGAAGTTAG------------AAAGTTGGTTCG...............................................................................................................................................................................................	23	20	0.10	2	1	1	0	0	0	0
.........................CACGAAGTTAG------------AAAGTTGGTTCGCA.............................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
...............................................................TACAAGGACTTGGTGCACGAAA......................................................................................................................................................................	22	20	0.10	2	1	1	0	0	0	0
....................................................TTGGTTCGCACTACAAGGACTTGG...............................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................AATACCTGGAACAAGTACACGATC.................................................................................................	24	20	0.10	2	0	0	0	0	0	2
........................TCACGAAGTTAG------------AAAGTTGGTTCGCA.............................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................ACTCGGAAATGGTACGTTTGG.......	21	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................................................................................CTCGGAAATGGTACGTTTGGACAGA..	25	10	0.10	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CTCGGAAATGGTACGTTTGGACAG...	24	10	0.10	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................TCGGAAATGGTACGTTTGGACAG...	23	11	0.09	1	1	0	0	0	0	0
.........................................................................................CAG-GAAAAGTTCGCTGCAGTCATCGCC......................................................................................................................................	27	16	0.06	1	1	0	0	0	0	0
.......................................................................................AACAG-GAAAAGTTCGCTGCAGTCATCGC.......................................................................................................................................	28	16	0.06	1	1	0	0	0	0	0
......................................................................................GAACAG-GAAAAGTTCGCTGCAGT.............................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
..........................................................................GGTGCACGAAAAGAACAG-GAAAAGTT......................................................................................................................................................	26	19	0.05	1	1	0	0	0	0	0
...............................................................TACAAGGACTTGGTGCACGAAAA.....................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
................................................................ACAAGGACTTGGTGCACGAAAAG....................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................ATACCTGGAACAAGTACACGATCT................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...............................................................TACAAGGACTTGGTGCACGAA.......................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................ACGAAGTTAG------------AAAGTTGGTTCGCACTA..........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.......................TTCACGAAGTTAG------------AAAGTTGGTTCG...............................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................AGGACTTGGTGCACGAAAAGAACAG-GAA...........................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..................TGTTCTTCACGAAGTTAG------------AAAGTTGG...................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................GACCCCAAATACCTGGAACAAGTACACGA...................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................AAATACCTGGAACAAGTACACGATCT................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................................................TCGCTGCAGTCATCGCCTACGCAGACCC...........................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................CTCGGAAATGGTACGTTTGGA......	21	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................GACTCGGAAATGGTACGTTTGGAC.....	24	20	0.05	1	1	0	0	0	0	0
........................TCACGAAGTTAG------------AAAGTTGGTTCGCAC............................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.......................................................GTTCGCACTACAAGGACTTG................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................TACGCAGACCCCAAATACCTGGAACAAGT.........................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................ACCTGGAACAAGTACACGATCTTG..............................................................................................	24	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CTCGGAAATGGTACGTTTGG.......	20	20	0.05	1	1	0	0	0	0	0
..........................ACGAAGTTAG------------AAAGTTGGTTCGCA.............................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.............................................................................................................TCATCGCCTACGCAGACCCCAAATACCTG.................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
..................................................................AAGGACTTGGTGCACGAAAAGAACAG-G.............................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GACTCGGAAATGGTACGTTTGGACT....	25	20	0.05	1	0	0	0	0	1	0
.......................TTCACGAAGTTAG------------AAAGTTGGTTC................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.........................CACGAAGTTAG------------AAAGTTGGTTCGCACT...........................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.........................CACGAAGTTAG------------AAAGTTGGTTCGCACC...........................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................................................................ACCCCAAATACCTGGAACAAGTACACGA...................................................................................................	28	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................ATACCTGGAACAAGTACACGATCTTG..............................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................TTGGTTCGCACTACAAGGACTTGGC..............................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................AAAAGTTCGCTGCAGTCATC.........................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droKik1

-----------------------------------------------------TGGTTTTTGCTGCAAGGCCTTGGCGCACGCAAAGAACAA-GAGAAATATGCGGCAGTAATCGCGTACGCCGATCCCAAATACCTCGATCAAGTGCACGATCTTGTCAATAACCCACCACAAACGAATCCGTACTCCACACTTAAACAAGCAATTTTGTCTAAATTTGCCGAATCAGAGATGGTGCGCCTCGACAGGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G-----------------------------------------------AGAGCTGGTTCATGCTGCAAGGCCTAGGTGCACGCAAAGAGCAA-GAAAAATACGCAGCAGTAATCGCGTACGCTGATCCCAAATACCTGGATCAAGTGCACG-CCTTGTCAACAACCCACCACAAACGAATCCGTACTCCACCTTTAAACAAGCCATTAAGTCCAAATTCGCAGAATCAGAGATGGTGTGCCTCGACAGACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------TGGTTTTTGCTGCAAGGCCTTGGTGCACGCAAGGAACAA-GAGAAATACGCAGCAGTAATCGCGAATGCTGATCCCAAATACCTGGATCAAGTGCACGACCTTGTCAATAACCCACCACAAACCAACCCGTACTCAACCCTTAAGCAAGCAATTTTGTCCAAATTTGCCGAATCAGAGATGGTCCGCCTCGACAGACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-----------------------------------------------------TGGTTTTTGCTGCAAGGCCTCGGTGCACGCAAAGAGCAA-GAGAAGTACGCAGCAGTAATTGCATACGCTGACCCCAAATACCTCGATCAAGTGCACGATCTTGTCAATAACCCACCGAAAACAAATCCGTACTCCACACTCAAACAAGCAATTTTGTCTAAATTTGCCGAATCAGAGATGGTGCGCCTCGACAGACT	Size	Hit Count	Total Norm	Total
No Reads

droSim2

A--------------------------------------------------------------------------------------ACGAA-AAAAAGTACAGAGTTGTAATTGACTATAGGAAATTCGAAATCATTGATCAAGGGTTCGATTCTATTAAATAGGA------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................AGAGTTGTAATTGACTATAGGAAATT...........................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.......................................................................................................................TAGGAAATTCGAAATCATTGATCAAGGG........................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................GGAAATTCGAAATCATTGATCAAGGGT.......................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TATAGGAAATTCGAAATC....................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dvi_9601

scaffold_12936:574422-574572 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.4	-20.2	-20.2