ID:

dvi_9599

 Coordinate:

scaffold_12936:565370-565441 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -13.3 -13.3

Flybase annnotation

CDS [Dvir\GJ14136-cds]; exon [dvir_GLEANR_14041:2]; exon [dvir_GLEANR_14041:1]; CDS [Dvir\GJ14136-cds]; intron [Dvir\GJ14136-in]

No Repeatable elements found

mature
star
  1. scaffold_8418:1275-1296 +
  2. scaffold_9618:6884-6905 -
  3. scaffold_9684:5126-5147 +
  4. scaffold_12841:12846-12867 -
  5. scaffold_12936:16276-16297 -
  6. scaffold_12936:27288-27309 -
  7. dvi_9599  scaffold_12936:565413-565434 +
  8. scaffold_12941:449671-449692 +
  9. scaffold_12960:90501-90522 +
  10. scaffold_12960:219366-219387 +
  11. scaffold_13045:135178-135199 +
  12. scaffold_13045:161105-161126 -
  13. scaffold_13045:1167965-1167986 +
  14. scaffold_13049:24686188-24686209 -
  15. scaffold_13049:24824542-24824563 +
  16. scaffold_13050:1221559-1221580 -
  17. scaffold_13050:1817758-1817779 +
  18. scaffold_13304:1173-1194 -
  19. scaffold_13324:83327-83348 -
  20. scaffold_13324:91838-91859 -
  21. scaffold_10293:2674-2695 -
  22. scaffold_12736:329788-329809 -
  23. scaffold_12890:8254-8275 -
  24. scaffold_13049:24660101-24660122 -
  25. scaffold_12939:76525-76546 -

Sense Strand Reads

##################################################------------------------------------------------------------------------##################################################
TTTCCCCGGGCCGGGAGCCGCAGGCCGTCTGCGTGACCCACGCCAGGGGCGTGAGCACTATCGAAGAGAACGGCCAGGAAAGGTTCCTTCACGAAAAGGTTCCTTCACGGTTCGCCATTAAGGCTGGGATGAAGTCTGGGCCGAGGAAGAGGACGCGGTGGTGACGGATTCG
***********************************************************...........(((((..(((.((..((((......))))..)))))..)).))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060688
160_ovaries_total
 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 M027
male body		 SRR060687
9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR060675
140x9_ovaries_total
 SRR060689
160x9_testes_total
 V047
embryo
 SRR060677
Argx9_ovaries_total
 SRR060673
9_ovaries_total
 M047
female body
 SRR060680
 9xArg_testes_total
 SRR060678
9x140_testes_total
 V053
head
 SRR1106729
mixed whole adult body
 SRR060654
160x9_ovaries_total
 SRR060670
9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060683
160_testes_total
 SRR060656
9x160_ovaries_total
..........................................................................................................................GCTGGGATGAGGTGTGGG................................ 18 2 8 11.25 90 40 9 0 1 0 10 1 11 0 4 0 0 0 6 1 0 0 0 0 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................AATGCTGGGATGAGGTGTGG................................. 20 3 7 10.43 73 29 17 0 1 0 2 5 4 0 3 0 0 0 4 2 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AATGCTGGGATGAGGTGTGGG................................ 21 3 3 5.67 17 9 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATGCTGGGATGAGGTGTG.................................. 19 3 19 5.26 100 27 26 0 1 0 11 4 15 0 5 0 0 4 3 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGCTGGGATGAGGTGTGGG................................ 20 3 7 4.29 30 23 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0
...........................................................ATCGAAGAGAACGGCCAGGAAAGG......................................................................................... 24 0 1 4.00 4 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGC......................................................... 22 0 20 2.80 56 0 0 0 0 23 0 0 0 0 5 12 0 3 0 0 1 3 0 0 0 0 0 0 1 3 0 3 0 0 0 0 2 0 0 0 0
..........................................................................................................................GCTGGGATGAGGTGTGGGC............................... 19 2 4 2.75 11 3 0 0 6 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAGGCTGGGATGAGGTGTGGGT............................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATGCTGGGATGAGGTGTGGGC............................... 22 3 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATCGAAGAGAACGGCCAGGAAAGGTTC...................................................................................... 27 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGCCA....................................................... 24 0 20 1.05 21 0 0 0 0 10 0 0 0 0 0 9 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................ATCGAAGAGAACGGCCAGGAAAGGCT....................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGAGAACGGCCAGGAAAGGTTCCTTC.................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTCGCCATTAAGGCTGGGATGA........................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTTCGCCATTAAGGCTGGGA........................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGAGAACGGCCAGGAAAGGTTTA..................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGGCTGGGATGAGGTGTGG................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGCCAAT..................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGAGAACGGCCAGGAAAGG......................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATGCTGGGATGAAGTGTGGGT............................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAGGCTGGGATGAGGTGTG.................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TCCCCGGGCCGGGAGCCGCAGGCCGTTT.............................................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGAGAACGGCCAGGAAAGGTTCC..................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGTTCGC......................................................... 23 0 20 0.75 15 0 0 0 0 0 0 6 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCG.......................................................... 21 0 20 0.70 14 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 4 0 1 2 0 0 1 0 0 0 0 1
........................................................................................................................ATGCTGGGATGAGGTGTGGGC............................... 21 3 3 0.67 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGGCTGGGATGAGGTGTGGGT............................... 21 3 6 0.67 4 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCTGGGATGAGGTCTGGGT............................... 19 2 5 0.60 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGCC........................................................ 23 0 20 0.55 11 0 0 0 0 5 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCTTTCACGGTTCGCCAATT.................................................... 27 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAGGCTGGGATGAGGTGT................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCACCAT...................................................... 25 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATGCTGGGATGAGGTCTG.................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGTTCGCCA....................................................... 25 0 20 0.25 5 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGCTGGGATGAAGTGTGGGT............................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTGGGATGAGGTGTGGGC............................... 18 2 9 0.22 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AAAGGCTGGGATGAGGTGTGG................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGTTCG.......................................................... 22 0 20 0.20 4 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAATGCTGGGATGAGGT..................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................AAAGGCTGGGGTGAGGTCTGG................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCGAGGAAGAGGACGCGGTGG........... 21 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCTGGGATGAGGTGTGGAC............................... 19 3 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGCTCGCTATAA.................................................... 27 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGCTGGGATGAGGTGTGG................................. 18 2 14 0.14 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGT............................................................. 19 0 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGTTCCTTCACGGTTCGCCA....................................................... 22 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGTTCCTTCACGGTTCGC......................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGT......................................................... 22 1 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....CCCGGGCCGGGAGCCGCAGGCCGT................................................................................................................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCTGGGATGAGGTGTGG................................. 17 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................GCTGGGATGAGGTGTGGGTC.............................. 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCTGGGATGAGGTCTGGAT............................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GTCTCGGCCGATGAAGAGGA................... 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................GCTGGGATGAGGTATGGGT............................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATCGAAGAGAACGGCTAG............................................................................................... 18 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................GCCGGCGATCTGCGTGACC...................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCTGGGATGAAGTGTGGCT............................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGTTCGCCAA...................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.TTCCCCGGGCCGGGAGCCGCA...................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....CCCGGGCCGGGAGCCGCAGG.................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGTTCGCC........................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGCTTCGC......................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGTTT....................................................... 24 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGTTCCTTCACGGTTCGCCAGT..................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCGAGGAAGAGGACGCGG.............. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAAAGGTTCCTTCACGGTTCGCT........................................................ 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GAAGGATGGGATGACGTC.................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCGAGGAAGAGGACGCGGTGGT.......... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGCTAA...................................................... 25 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTCGA......................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGCTGGGATGAGGTATGG................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GGGGCCGAGGGAGAGGAC.................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AAAGGTTCCTTCACGGTTCGCC........................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGTTC........................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TCCCCGGGCCGGGAGCCGCAG..................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GGAAAGGTTCCTTCACGGTTCGC......................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......CGGGCCGGGAGCCGCAGGCCGT................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAGGTTCCTTCACGGT............................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAAGGGGCCCGGCCCTCGGCGTCCGGCAGACGCACTGGGTGCGGTCCCCGCACTCGTGATAGCTTCTCTTGCCGGTCCTTTCCAAGGAAGTGCTTTTCCAAGGAAGTGCCAAGCGGTAATTCCGACCCTACTTCAGACCCGGCTCCTTCTCCTGCGCCACCACTGCCTAAGC
*********************************************************...........(((((..(((.((..((((......))))..)))))..)).))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR1106730
embryo_16-30h
 SRR060688
160_ovaries_total
 V047
embryo
 SRR060670
9_testes_total
 V116
male body		 SRR060684
140x9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060672
9x160_females_carcasses_total
 V053
head
 SRR060676
9xArg_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
..............................................................................TTTCCAAGGAAGTGCTTTTCCAAG...................................................................... 24 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CCCCCTACTTCGGACCCGGCT............................ 21 3 9 2.00 18 0 0 18 0 0 0 0 0 0 0 0 0 0
..............................................................................TTTCCAAGGAAATGCTTTTCCAAG...................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCCTTTCCAAGGAAGTGCTTTTCCAAG...................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................CCTTTCCAAGGAAGTGCTTTTCCAAG...................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTCCAAGGAAGTGCTTTTCCAAG...................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCCCGCACTCGTGATAGCTTCTCT....................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................CGTGATAGCTTCTCTTGCCGGTCC.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCAAGGAAGTGCTTTTCCAAGGAA................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................GGAGGTTCCAGGCGGTAATTC.................................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................TGATAGCTTCTCTTGCCG.................................................................................................. 18 0 20 0.30 6 0 0 0 5 0 0 0 0 0 0 0 0 1
....................................................................................................AGGTAGTGCCCAGCGGAAA..................................................... 19 3 10 0.30 3 0 0 0 0 0 0 2 0 1 0 0 0 0
...........................AAACGCACTGGGTCCGGTC.............................................................................................................................. 19 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................TACTTCAGACCCGGCTCCTTCTCCT................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GCTTTTCCAAGGAAGTGCCAAGCGGT....................................................... 26 0 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGCCTGTCCTTTACTAGGA.................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................AGTTGTAATTCCGACACTAC......................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................CACCCTACTTCGGACCAGGCT............................ 21 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................CCCCGCACTCTTGATAGCTTCTCT....................................................................................................... 24 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................TCTTGCCGGACCCGTCCA........................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12936:565320-565491 + dvi_9599 TTTCCCCGGGCCGGGAGCCGCAGGCCGTCTGCGTGACCCACGCCAGGGGCGTGAGCACTATCGAAGAGAACGGCCAGGAAAGGTTCCTTCACGAAAAGGTTCCTTCACGGTTCGCCATTAAGGCTGGGATGAAGTCTGGGCCGAGGAAGAGGACGCGGTGGTGACGGATTCG
droMoj3 scaffold_6498:2352498-2352620 - GTTTCCCGGTGAAGGGGCCAGAGGGCGACAGCGAGATCCCCGGTCGGGCAGGGAGTATTACCGCCA---ACGGGAGGGGCAGGAGCAA-----------CCTGCACACGGTGCACCGTTCAGAAATAAACGAGGTCT-----------------------------------
droAna3 scaffold_8808:2549-2552 + TTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTCCCCGGGCCGGGAGCCGCAGGCCGTCTGCGTGACCCACGCCAGGGGCGTGAGCACTATCGAAGAGAACGGCCAGGAAAGGTTCCTTCACGAAAAGGTTCCTTCACGGTTCGCCATTAAGGCTGGGATGAAGTCTGGGCCGAGGAAGAGGACGCGGTGGTGACGGATTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................ATCGAAGAGAACGGCCAGGAAAGG.........................................................................................2414.004000000010020000000000000000000000000100000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCGC.........................................................22202.805600000000000000000000200312023100315003030000000000000000000000000
...........................................................ATCGAAGAGAACGGCCAGGAAAGGTTC......................................................................................2712.002000000000000000000000000010000010000000000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCGCCA.......................................................24201.05210000000000000000000000009010010000000010000000000000000000000000
................................................................AGAGAACGGCCAGGAAAGGTTCCTTC..................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................TTCGCCATTAAGGCTGGGATGA........................................2211.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................GTTCGCCATTAAGGCTGGGA...........................................2011.001000000001000000000000000000000000000000000000000000000000000000
................................................................AGAGAACGGCCAGGAAAGGTTTA.....................................................................................2311.001000000000000000000000000000000000000001000000000000000000000000
................................................................AGAGAACGGCCAGGAAAGG.........................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
................................................................AGAGAACGGCCAGGAAAGGTTCC.....................................................................................2311.001000000000000000000000000000000000000001000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGTTCGC.........................................................23200.7515000000000110000000000000000700000000600000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCG..........................................................21200.7014000010100000000000000004200020100001020000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCGCC........................................................23200.5511000000000000000000000001505000000000000000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGTTCGCCA.......................................................25200.255000000000000000000000000000000010000400000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGTTCG..........................................................22200.204000000000000000000000000000000020000200000000000000000000000000
............................................................................................................................................CCGAGGAAGAGGACGCGGTGG...........21200.153000000000030000000000000000000000000000000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGT.............................................................19200.102000000000000000000000000000000010000100000000000000000000000000
...............................................................................................AAGGTTCCTTCACGGTTCGCCA.......................................................22200.102000000000000000000000000000000010000001000000000000000000000000
...............................................................................................AAGGTTCCTTCACGGTTCGC.........................................................20200.102000020000000000000000000000000000000000000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCGT.........................................................22200.102000000000000000000000001001000000000000000000000000000000000000
....CCCGGGCCGGGAGCCGCAGGCCGT................................................................................................................................................24200.102000000000000000000000000000100001000000000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGTTCGCCAA......................................................26200.051000000000000000000000000000100000000000000000000000000000000000
.TTCCCCGGGCCGGGAGCCGCA......................................................................................................................................................21200.051000000000000000000001000000000000000000000000000000000000000000
....CCCGGGCCGGGAGCCGCAGG....................................................................................................................................................20200.051000000000010000000000000000000000000000000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGTTCGCC........................................................24200.051000000000000000000000000000100000000000000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCGTTT.......................................................24200.051000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................CCGAGGAAGAGGACGCGG..............18200.051000000000010000000000000000000000000000000000000000000000000000
............................................................................................GAAAAGGTTCCTTCACGGTTCGCT........................................................24200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................CCGAGGAAGAGGACGCGGTGGT..........22200.051000000000010000000000000000000000000000000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTCGA.........................................................22200.051000000000000000000000001000000000000000000000000000000000000000
..............................................................................................AAAGGTTCCTTCACGGTTCGCC........................................................22200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGTTC...........................................................20200.051000000000000000000000000001000000000000000000000000000000000000
..TCCCCGGGCCGGGAGCCGCAG.....................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
......CGGGCCGGGAGCCGCAGGCCGT................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................AAAAGGTTCCTTCACGGT.............................................................18200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
GTTTCCCGGTGAAGGGGCCAGAGGGCGACAGCGAGATCCCCGGTCGGGCAGGGAGTATTACCGCCA---ACGGGAGGGGCAGGAGCAA-----------CCTGCACACGGTGCACCGTTCAGAAATAAACGAGGTCT-----------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................GGGAGTATTACCGCCA---ACGGGAGGG..............................................................................................2541.757700000
..................................................GGGAGTATTACCGCCA---ACGGGAG................................................................................................2341.506600000
..................................................GGGAGTATTACCGCCA---ACGGGAGGGG.............................................................................................2641.255500000
..................................................GGGAGTATTACCGCCA---ACGGGAGG...............................................................................................2441.004400000
..................................................GGGAGTATTACCGCCA---ACGGGAGGGGC............................................................................................2740.753300000
..................................................................................................................CCGTTCAGAAATAAACGAGGTCT-----------------------------------2320.501000010
.........TGAAGGGGCCAGAGGGCGACAGCGAGA........................................................................................................................................2720.501000001
.TTTCCCGGTGAAGGGGCCAGAGGGCGA................................................................................................................................................2720.501100000
....CCCGGTGAAGGGGCCAGAGGGCGACAG.............................................................................................................................................2720.501100000
........................................................................................................ACACGGTGCACCGTTCAG..................................................1830.331100000
..........................GACAGCGAGATCCCCGGTCGGGC...........................................................................................................................2340.251100000
....................................TCCCCGGTCGGGCAGGGAGTATTACC..............................................................................................................2640.251010000
.....................................................AGTATTACCGCCA---ACGGGAGG...............................................................................................2140.251010000
...................................................GGAGTATTACCGCCA---ACGGGAGG...............................................................................................2340.251100000
............................................CGGGCAGGGAGTATTACCGCCA---ACGGG..................................................................................................2740.251100000
droAna3
TTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads

Generated: 05/16/2015 at 08:10 PM