ID:

dvi_9584

 Coordinate:

scaffold_12936:104517-104667 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_14020:2]; CDS [Dvir\GJ14129-cds]; intron [Dvir\GJ14129-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAAAAAATAAAATAATTATAAATAATCATAAACAAATACAATAAAATAAATTCGGATTCAAAAATAGGGAAGTAATTAAAAAGAGCCGGTCGGGAAATACTGGATATTTAAACGGAGTCACGCGGACCAGGAGAGGAAAGGGGAATAGCAATCAAAGGTTACGTACGAAAGGAAGGATACGAGTGATTGTCAAAATCCAGGGGTGGGCGCACGGTGGATCCACTGGCGACGAAAGGAGGAACTGGAGGCG
**************************************************...(((((((..(((((....((((.((.....((.....))...)).))))...))))).....))))).))....((......))...(((.....(((((((...((...................))...))))))).....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060681
Argx9_testes_total
 M047
female body
 M061
embryo
 SRR060679
140x9_testes_total
 SRR060678
9x140_testes_total
.............................................................................................................................................................................................................GGGCGCACGGTGGATGCCTTGGC....................... 23 3 2 44.00 88 61 7 5 5 0 0 3 2 1 1 1 0 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................GGCGCACGGTGGATGCCTTGGC....................... 22 3 2 25.50 51 27 3 1 4 9 2 0 2 0 1 0 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGGCGCACGGTGGATGC............................. 18 2 5 14.80 74 30 4 5 6 2 8 3 3 7 4 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGCACGGTGGATGCCTTGGC....................... 21 3 2 9.00 18 3 3 2 0 4 4 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGCGCACGGTGGATGCCTTGG........................ 22 3 4 6.00 24 11 3 3 1 2 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................GGCGCACGGTGGATGCCTTGG........................ 21 3 4 5.25 21 7 2 4 2 0 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGCACGGTGGATGCCTTGGC....................... 20 3 9 3.44 31 9 3 1 5 7 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAGGAGAGGAGAGTGGAAT........................................................................................................ 19 2 4 2.75 11 1 2 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................GCGCACGGTGGATGCCTTGG........................ 20 3 9 2.33 21 12 0 3 1 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAGGAGAGGAGAGTGGAATT....................................................................................................... 20 3 12 1.00 12 4 0 2 3 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAGGAGAGGAGAGTGGAA......................................................................................................... 18 2 9 0.56 5 2 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGCGCACGGTGGATGCCTTGGCG...................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAGGAGAGGAGAGGGGAAT........................................................................................................ 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGCGCACGGTGGATGCATTGGC....................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TGTCAAAATCCAGGGGTGGGC.......................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGGGTGGGCGCACGGTGGAT............................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGCGCACGGTGGATGCCGTG......................... 21 3 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCACGGTGGATGCCCTGGC....................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGCGCACGGGGGATGCCCTGGC....................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGGAGAGGAGAGGGGAAT........................................................................................................ 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGCACGGTGGATGCCTTGG........................ 19 3 19 0.47 9 6 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGCGCACGGTGGATGCTTTGG........................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCGTACCACGAGAGGAAA............................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................AGAGGGCGCACGGTGGAT............................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGAGGGCGCATGGTGGATGC............................. 20 3 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
................................................................................................................................................................................................................CGCACGGTGGATGCTTTGGC....................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGAAGAGGAAAGTGGAAT........................................................................................................ 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................CAGAAGAGGAAAGTGGAA......................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................CGGGACATAGTGGATGTTT............................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................ACACGGTGGATGCCCTGGC....................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................AAAGGAGGAACTTGGGGTG 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................AATAGGGACGGTCGGGAAA......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTGCAGGAGAGGAAAGTGGA.......................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTGAAAGGAGGAACT....... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................CAGTAGAGGAGAGTGGAAT........................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATTTTTTTATTTTATTAATATTTATTAGTATTTGTTTATGTTATTTTATTTAAGCCTAAGTTTTTATCCCTTCATTAATTTTTCTCGGCCAGCCCTTTATGACCTATAAATTTGCCTCAGTGCGCCTGGTCCTCTCCTTTCCCCTTATCGTTAGTTTCCAATGCATGCTTTCCTTCCTATGCTCACTAACAGTTTTAGGTCCCCACCCGCGTGCCACCTAGGTGACCGCTGCTTTCCTCCTTGACCTCCGC
**************************************************...(((((((..(((((....((((.((.....((.....))...)).))))...))))).....))))).))....((......))...(((.....(((((((...((...................))...))))))).....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060658
140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060666
160_males_carcasses_total
 SRR1106727
larvae
 SRR1106728
larvae
.....................................................................................................................................................................................................................CCACCTAGGTGACCGCTGCTT................. 21 0 2 0.50 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTAGGTCCCCACCCGCGTGCC.................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................................TTCGGCTCAGTGCGCCTGGTC........................................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................CTTCGCCCCAGTGCGCCTGGTC........................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................GCGTCAGTGCGCCTGGGC........................................................................................................................ 18 2 4 0.50 2 2 0 0 0 0 0 0 0
............................................................................................................AATCGGCGTCAGTGCGCCTGGTC........................................................................................................................ 23 3 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................GGCGTCAGTGCGCCTGGTC........................................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................TCGGCGTCAGTGCGCCTGGTC........................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................................................................GCGTCAGTGCGCGTGGTC........................................................................................................................ 18 2 6 0.33 2 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAGTTTCGAATGCATG.................................................................................... 17 2 14 0.29 4 0 0 0 0 2 0 1 1
..............................................................................................................TTTGCCACAGTGGGCGTGGTC........................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGGTGACCGCTGCTTTTC.............. 19 2 4 0.25 1 0 0 0 1 0 0 0 0
................................................................................................................TGCGTCAGTGCGACTGGGC........................................................................................................................ 19 3 10 0.20 2 2 0 0 0 0 0 0 0
.................................................................................................................GCGTCAGTGTGCCTGGTC........................................................................................................................ 18 2 5 0.20 1 1 0 0 0 0 0 0 0
...............................................................................................................CTGCCTCAGTGCGACTGGGC........................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0
...............................................................................................................TTGCCTCGGTGCGTCTGG.......................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0
................................................................................................................GGCGTAAGTGCGCCTGGTC........................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0 0 0
................................................................................................................GGCGTCAGTGCGCCTGGGC........................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0 0 0
................................................................................................................CGCGTCAGTGCGCCTGTTC........................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12936:104467-104717 - dvi_9584 TAAAAAAATAAAATAAT--TATA---------------------------------------------------AATAAT-----------------CATAAACAAA-------------------------------------------------------------------TACAA---------------------------------------------------------------------------------------TAAAATAAAT-------------------------------------TCGGATT-----------------CAAAAAT---------------------------------------------------------------------------AGG---GAAGT-----------------------------------------AATT-----------------------------------A-----------------AAAAG----------------------AGC------------------------------------------------------------------------------------------------------------------------CGGTCGGGAA---------------------------------------------------------ATACTG--GATATTTAAA-CGGAGTCACGCG-----------GACCAGGAGAG-GAAA---------------------------------------------------------------------------------------------GGGGAATAGCAATCAAAGGTTACGTACGAAAGGAAGGATACGAGTGATTGTCAAAATCCAGGGGTGGGCGCACGGTGGATCCACTGGCGA-------------CGAAAGGAGGA--------ACTGGAGGCG
droMoj3 scaffold_409:283-530 + AAAAAAAATAAAAATAAAA--AT---------------------------------------------------A----------------------------------------------------------AAAA-------------TAAAAAAAG--------------AGG----AA-------------------A---------------------------------------TAAA-----------GA-----GAATACAGT-------------------------------------------------------------------------------------------------------AAAATTAGAA------------TAAGTGAT-CA------------------AAGG----------------GTAGGTTAAGAGGA--------AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATAATAATAAGACGATAAATGC------A------------AGCGAGTAAGAGCTGAACAAACCGAGAGGAATAAATAAACATTCGA-------------------------------------------------------GATGGAGG---------------ACGCCGAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGGTGGATCTACCAGCGG-------------TGCAAGGAGGA--------GCTGATCACG
droGri2 scaffold_900:735-881 - AGGAAAACAAGAAAATGGT---A---------------------------------------------------AAAGAT-----------------GACAAATGGTTCCACAAATATAAACGAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG---GGAAA-----------------------------------------A--------------------------------------------------------------------------------------------------------ACCATTAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGGAAAGGAAAGAG---------------------------------------------------------------------------------------------GAATGATTGTTGAAGGTTGCTGAGACAACAGCAGAAACGAGCAATTG---------------------------------------------------------------------------TTCAAGT
droWil2 scf2_1100000004589:13669-13893 + TAAAAAAAAATTTA-TTGT---T---------------------------------------------------GCAAGGGATGTCGTTGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAAA---------CTAACAGGATTCATTCTAGAGCAGTGAAATTTGAAACAAATTTTCCGAAAGAGAGTAGGAGTCAAAAAGAAATC----------------------------------------CTAGAAGGAA-------------------------------------------------------------------------------------------------------------------------------ATGCGGAATGTGATCAGCTTAGTTTTCCGAATGAAAGTATGGAAAGTGATCAGC----------------------------------------TCAATTTCCCGAATGAAAGTAAGGAA---AGTGAT----------------------------------------------------------------CA---------ACTCAACCC
dp5 4_group1:2367476-2367584 + TAATATGAAATAATATT--AATA---------------------------------------------------T--------------------------------------------------------------GAAA------TAAT------AAT-AATA---------GGAAATAAT----------------------------------------------------------AATA-----------TA-----GGAAATTAATAAT-------------------------------------AT------------------------------------------------------------AG------------------------------------------------GA-----------------------------------------AATAATA-----------------------------------A-----------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TAATAGGACACAGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------ATAGGAATT
droPer2 scaffold_6222:448-654 - TAAAAAAAAAATTTAGA--TAGAGTTTAAAAACGAACATAGAGGACTTGGCAATGACAAAGGAGGAATATCAGACCAAAGTATATCAATGAAAAAAA------------------------------------AAAA-------------CAA--AAAA--------------AAA----GA-------------------A---------------------------------------TACA-----------TAAAAAAAAATACACT-------------------------------------------------------------------------------------------------------AAAACAAA------------------AA-----------AAAAAAAG---GAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACC------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTGACCTAGTAGATAATGTATCAGGACAACTGCA-------------------------------------------------------------------------AAAACTC
droAna3 scaffold_13417:4065227-4065419 + AAAAAAGGAAAAGGAAA--AATA---------------------------------------------------A----------------------------------------------------------AAAA-------------T-CCAAAAA--------------AAA----AA-------------------A---------------------------------------AACA-----------A-----------AAAAAAAT-------------------------------------ATATATT-------------------------------------------------------TAAAAAAAAATATAAAATAAGAAAAATATTAAAAAAAAAAAGTGAAA---AAAATATTAGA----------AAAAAATGAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGAAAAAACATTAGA------AA--------TAAAAAAAAA-------------AGAAACA--------------------------------------------------------------------------------------------------------------------------------------------------AGGAAAATAAAAGAT---------------------------------------------------------------------------GGAAAAAAT
droBip1 scf7180000395232:32305-32480 + TAAAACAGAAAAGTTTAAT---A---------------------------------------------------AAAAA------------------------------------------------------G-------------AAACTACAAAAA--------------AAT----AA-------------------A---------------------------------------TACA-----------AA-----AGAAATAAATAAA-------------------------------------TT------------------------------------------------------------TAAA-----A------------AAAACAAAACG------------------AA------------------------------------AAA-----------------------------ATCGAC------TAAGTAC---------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG-CTGATTA------------------------------------------------------------------------------------------------CCTCATCAAACGGAAGAAGGAAG-----------------------------------------------------------------------------G-----------AAGAAACCCAACAGGACA--TCTAACTAA---GGAA---GACAGGATAC
droKik1 scf7180000302476:947758-947932 + TAAGAAATAAAACAACA--TTTA----------------------------------------------------ATGTA-----------------TAGAAA-----------------------------------------------------------ATGTAACATCA---------TAATTAAAACCTG-------------------------------------------------------------------------------------------------------------------------------------------------------TAACAAAGCTAGAGCCAAGTGCGGAATGC------------------------------------------TTAAG---A--------------------------------------------------------------------------------------------------------AAA----------------------TGT------------------------------------------------------------------------------------------------------------------------TGCTCAAAAAATATGTTGACTTAA---------------CAT----------TGTTGAG------CGA-----CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGACAGGGCAAAGATAATATAAAGTA----TAAGATGCGTA
droFic1 scf7180000454119:4144-4406 + TGAAAAAAAAAATTATA--TTTAATTAATAAAC-------------------------------------------------------TAAA--------------------------------------------------------------TATAC--------------GGG----AA-------------------A-----------------------------------AAAAAATAATAATAATAAATAAAATAAAT--------------------------------------------------------------------------------------------------------------------------------------------C------------------------GTTGG----------GTCAGAAAATACC-------------------------------------------------CAAGCAC---------------A------AACTCATCAACGAAGAGATGCCAACCATGGAGGAATTAAATAACCCGGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGACAAAGACGCAGCAAACAATACCGGTGAGTCTGTTCCAATTAGGCTTAAGAATCCTGGTGTGGGGAC----------------------------------------------------------------------------------------------------------GACTTGGATATATTCCCGT-------------CGTAAGGAGGA--------ATTATTAGCC
droEle1 scf7180000486807:3707-3976 + AACGCTGGGAAAACAAA--AATA---------------------------------------------------A--TA------------------------------------------------------A-------------GAACTAAAATAA--------------AAT----AA-------------------A---------------------------------------TAAA-----------TA-----AAATAAAATAAAA-------------------------------------CCCAAT-----------------------------------------------------------------A------------CAAACAATGCA------------------AAAT-------------------------------------------------------------------------AAAATTTAAAAGGAAAAAAAAATGTTGTCAAACAAGACCATAGAAGACGAGA---------TGGACGAAGTAAATACCACGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCAAAGATGTAGCAAACAATCCTGTTGAGTATGTTCCAATTAGACTTAGGAATCCTGGGATAGGGAG----------------------------------------------------------------------------------------------------------AACTTGGATATATTCCCGT-------------CGTAAGGAGGA--------ATTATAAGCC
droRho1 scf7180000766902:670-874 + CCGGAACATTTCGGATCCA--TT---------------------------------------------------A----------------------------------------------------------AAAT----CAGATT------------------------------------------CAC-ACAAAATAAAGTAGAAGATTTGACAGAAGAAACTAAGCAGGAAGAATTAATATTAGAAACACATAACAGAGCACATAGAAA-CGCAGAAGAAAACAAAAACCAACTTGCAGACAAATATTATTTCCCCAAAATGAAACAAAAAATAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------CATTAGT------CAA-----AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCAGGG
droBia1 scf7180000297382:5299-5480 - TAAGAGACTGCTTTAAA--TATG---------------------------------------------------T---------------------------------------------GCAAAAATACAAA----AAA-----------------------------------ATAA---------------------------------------------------------------------------------------TAAAATTGA------------------------------------------------------------------------------------------------------------------------------CAAA----------------------------------------------------------------------------------ACAAAAAATATGGACTGCTTCTTAGTTCCCAATGGTAATTTTGAAA----------------------TGC------------------------------------------------------------------------------------------------------------------------TAGCCCGTAAATATGCTTATT------------------------------------------------------------TATATATGATTCACTTC-----------GAACAGTACAATAAAGTAGCCACCAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTACGCGCG
droTak1 scf7180000415846:149640-149856 - GGAAAAACCAAAACAACAA--CC---------------------------------------------------A----------------------------------------------------------CAGCGAAA-------------GAAAGCAAAAATAATTTCG---------CGATTCGTCCCCCGGGC------------------------------------------------------------------------------------------------------------------AGAGCTTTAAAAAAAGTCGCAGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCGGGGAGAAAGGGAGG---------AGGAGAAAGGAGGAGACAGGGGG-------------------------------------------------TGGCAGGAAGTGAGAAAGAGAGAAGACGGGGCTTGCGCAGGCGCCTGGAAGA-------------------------------ATCCGAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------AGAAAGAAAGA---------GCGAGAGGC
droEug1 scf7180000407460:5856-6028 - TAGAAATAAGTCGGGAATA--GT---------------------------------------------------T----------------------------------------------------------TTAC----CATATT------------------------------------------TAA-TCAGAA------------------------------------------------------------------------------------------------------------------ATGACACCAAAATAAATTATAAATTAAAAATATTAATTGACAAAGGGACAACCTCGGGTTAT------------------------------------------ATTAG---A--------------------ACAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAAAAATAAGA--------------------------------------------------------------------------AGAGCTTC-----------TAA-------------------------------------------------------------------------------------------------TATATAAAAGAGTAACCACAGTAAAT--------------------------------------------------------------------------------------------------------------GGTTA
dm3 chr3LHet:203776-203917 - AAGAAAATCGCATAGCA--GACG---------------------------------------------------CATTGT-----------------CAAGA---ATTACACAAATATC------------TA----AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------------------------------GA------------------TA-----------AAATTAAG---GAAGTATTCCATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGATGAGATAT-----------------------------------------------------------------------------A-----------TGTAAGTTCAACCGCAGA--AACAAGAGAGAATGGTGATTGCATACAAA
droSim2 4:850179-850309 + TGAAAAAAAAAAATCTTGT---A---------------------------------------------------CCGAATTATAACACTTAA---------------------GATCTAAACGAAGGT------------------------------------------------------------------------------------------------------------------------------------------------ACAT------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTACATTAAATAAAAG-------------------AATTATAACGATGAAGGCGGAAAAAATGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTA-------------------------------ATACGCATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCGA
droSec2 scaffold_26:218992-219097 - TAGCACAATACTAAAGATA--CT---------------------------------------------------A----------------------------------------------------------AAATGCTA------GTAC------AAT-ATTA---------AAATTGCAT----------------------------------------------------------GGTT-----------CA-----A----------------------------------------------------------------------------A---------------------------------------------------------AGCG--------------------AAA----------------------------------CCGTTGAAAGCTCC-----------------------------------TAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------TATTAGG------AAA-----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGAAGTT
droYak3 v2_chrUn_5405:165752-165904 + TAAAAATATAAAAATTAAATTCG---------------------------------------------------A---TTAGTCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----------------------TGC------------------------------------------------------------------------------------------------------------------------TTATCACAGAATAGGCCTATACAGGCAGAAACAATTCAAAGGCATGTATCAACATTAGT------CG--------ACTGCTTTAA-------------TGAAGCACGAAAACTAGTATAC-GAAC---------------------------------------------------------------------------------------------ATGGGAAAACA--------------------------------------------------------------------------------------------------------------------ATTAA
droEre2 scaffold_4826:93765-93874 - TTAAAAAGAACAAAAAT--ATCA---------------------------------------------------A--------------------------------------------------------------CAAA------TAAT---TAAAAC-A------------TTAAATGA------------------------------------------ACTAATTAGGCGGCG--------------------------------------------------------------------------------T-----------------TAAAACT------------------------------------------------------------------------------AAA----------------------------------T-----------ACCT-----------------------------------A-----------------AGACT----------------------CCT------------------------------------------------------------------------------------------------------------------------CCAGCGGACA---------------------------------------------------------ATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAAAAAAATAAAATAAT--TATA---------------------------------------------------AATAAT-----------------CATAAACAAA-------------------------------------------------------------------TACAA---------------------------------------------------------------------------------------TAAAATAAAT-------------------------------------TCGGATT-----------------CAAAAAT---------------------------------------------------------------------------AGG---GAAGT-----------------------------------------AATT-----------------------------------A-----------------AAAAG----------------------AGC------------------------------------------------------------------------------------------------------------------------CGGTCGGGAA---------------------------------------------------------ATACTG--GATATTTAAA-CGGAGTCACGCG-----------GACCAGGAGAG-GAAA---------------------------------------------------------------------------------------------GGGGAATAGCAATCAAAGGTTACGTACGAAAGGAAGGATACGAGTGATTGTCAAAATCCAGGGGTGGGCGCACGGTGGATCCACTGGCGA-------------CGAAAGGAGGA--------ACTGGAGGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAAATCCAGGGGTGGGC...............................................................2120.501000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGTGGGCGCACGGTGGAT....................................................2120.501000000000010000000000000000000000000000000000000000000000000000
droMoj3
AAAAAAAATAAAAATAAAA--AT---------------------------------------------------A----------------------------------------------------------AAAA-------------TAAAAAAAG--------------AGG----AA-------------------A---------------------------------------TAAA-----------GA-----GAATACAGT-------------------------------------------------------------------------------------------------------AAAATTAGAA------------TAAGTGAT-CA------------------AAGG----------------GTAGGTTAAGAGGA--------AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATAATAATAAGACGATAAATGC------A------------AGCGAGTAAGAGCTGAACAAACCGAGAGGAATAAATAAACATTCGA-------------------------------------------------------GATGGAGG---------------ACGCCGAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGGTGGATCTACCAGCGG-------------TGCAAGGAGGA--------GCTGATCACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGC...............................................................23200.80161000060
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGG.........................................................25200.459600003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGG..........................................................24200.357700000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCG...........................................................23200.357600001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGC...............................................................24200.306500010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-------------TGCAAGGAGGA--------GCTGATCACG23200.255210002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGT.............................................................25200.204400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGAGGAATAAATAAACATTCGA-------------------------------------------------------GA..........................................................................................................................................................................................................................................28120.172200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTC............................................................26200.153200001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTC............................................................22200.153300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAACAAACCGAGAGGAA..................................................................................................................................................................................................................................................................................................................24200.153200010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGG.........................................................24200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCG..............................................................24200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTACCAGCGG-------------TGCAAGGAGGA--------GC........28200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGAGGAATAAATAAACATTCGA-------------------------------------------------------GAA.........................................................................................................................................................................................................................................29120.081100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACCGAGAGGAATAAATAAACATT......................................................................................................................................................................................................................................................................................................28130.081000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACCGAGAGGAATAAATAAAC.........................................................................................................................................................................................................................................................................................................25130.081100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGC...............................................................26200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAGAGCTGAACAAACCGAGAG.....................................................................................................................................................................................................................................................................................................................24200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCAGCGG-------------TGCAAGGAGGA--------GCTGAT....28200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAACAAACCGAGAGGAATA................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGGT........................................................26200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGCGG-------------TGCAAGGAGGA--------GCT.......23200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-------------TGCAAGGAGGA--------GCTGATCAC.22200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................T-CA------------------AAGG----------------GTAGGTTAAGAGGA--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGGATTGAGCGTCGGGTGG......................................................23200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACAAACCGAGAGGAATAAAT.............................................................................................................................................................................................................................................................................................................25200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAAACCGAGAGGAATAAAT.............................................................................................................................................................................................................................................................................................................23200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGGTGG......................................................27200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGG-------------TGCAAGGAGGA--------GCTGATTTT.26200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCGTCGGGTGGATCTAC................................................22200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAACAAACCGAGAGGAAT.................................................................................................................................................................................................................................................................................................................25200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGT.............................................................26200.051100000
.........................................................................................................................................................................................................A---------------------------------------TAAA-----------GA-----GAATACAGT-------------------------------------------------------------------------------------------------------AAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTC............................................................27200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAG................................................................23200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGG..........................................................23200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGTCGGGTGGATCTACCAG.............................................23200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGGTGG......................................................28200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGG..........................................................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAACAAACCGAGAGG....................................................................................................................................................................................................................................................................................................................21200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCG...........................................................27200.051000001
........................................................................................................................................................................................................................................................................AATACAGT-------------------------------------------------------------------------------------------------------AAAATTAGAA------------TAAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------TAACCCAGGATTGAGCGTCGGGTG.......................................................27200.051100000
droGri2
AGGAAAACAAGAAAATGGT---A---------------------------------------------------AAAGAT-----------------GACAAATGGTTCCACAAATATAAACGAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG---GGAAA-----------------------------------------A--------------------------------------------------------------------------------------------------------ACCATTAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGGAAAGGAAAGAG---------------------------------------------------------------------------------------------GAATGATTGTTGAAGGTTGCTGAGACAACAGCAGAAACGAGCAATTG---------------------------------------------------------------------------TTCAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAAAAAAAAATTTA-TTGT---T---------------------------------------------------GCAAGGGATGTCGTTGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAAA---------CTAACAGGATTCATTCTAGAGCAGTGAAATTTGAAACAAATTTTCCGAAAGAGAGTAGGAGTCAAAAAGAAATC----------------------------------------CTAGAAGGAA-------------------------------------------------------------------------------------------------------------------------------ATGCGGAATGTGATCAGCTTAGTTTTCCGAATGAAAGTATGGAAAGTGATCAGC----------------------------------------TCAATTTCCCGAATGAAAGTAAGGAA---AGTGAT----------------------------------------------------------------CA---------ACTCAACCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAATGTGATCAGCTTAGTTTT...........................................................................................................................................................................................2370.14101000
dp5
TAATATGAAATAATATT--AATA---------------------------------------------------T--------------------------------------------------------------GAAA------TAAT------AAT-AATA---------GGAAATAAT----------------------------------------------------------AATA-----------TA-----GGAAATTAATAAT-------------------------------------AT------------------------------------------------------------AG------------------------------------------------GA-----------------------------------------AATAATA-----------------------------------A-----------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TAATAGGACACAGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------ATAGGAATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAAAAAAAAAATTTAGA--TAGAGTTTAAAAACGAACATAGAGGACTTGGCAATGACAAAGGAGGAATATCAGACCAAAGTATATCAATGAAAAAAA------------------------------------AAAA-------------CAA--AAAA--------------AAA----GA-------------------A---------------------------------------TACA-----------TAAAAAAAAATACACT-------------------------------------------------------------------------------------------------------AAAACAAA------------------AA-----------AAAAAAAG---GAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACC------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTGACCTAGTAGATAATGTATCAGGACAACTGCA-------------------------------------------------------------------------AAAACTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................ACAAAGGAGGAATATCAGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
...................................................AATGACAAAGGAGGAATATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACC------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTGACCTA..........................................................................................................19200.051010000
................................................GGCAATGACAAAGGAGGAATATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
........................................................CAAAGGAGGAATATCAGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
.....................................................TGACAAAGGAGGAATATCAGACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTGACCTAGTAGA.....................................................................................................18200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGACCTAGTAGATAATGT...............................................................................................20200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGACCTAGTAGATAATGT...............................................................................................22200.051000001
droAna3
AAAAAAGGAAAAGGAAA--AATA---------------------------------------------------A----------------------------------------------------------AAAA-------------T-CCAAAAA--------------AAA----AA-------------------A---------------------------------------AACA-----------A-----------AAAAAAAT-------------------------------------ATATATT-------------------------------------------------------TAAAAAAAAATATAAAATAAGAAAAATATTAAAAAAAAAAAGTGAAA---AAAATATTAGA----------AAAAAATGAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGAAAAAACATTAGA------AA--------TAAAAAAAAA-------------AGAAACA--------------------------------------------------------------------------------------------------------------------------------------------------AGGAAAATAAAAGAT---------------------------------------------------------------------------GGAAAAAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA-------------AGAAACA--------------------------------------------------------------------------------------------------------------------------------------------------AGGA...............................................................................................2060.171010000
.............................................................................................................................................................................AAA----AA-------------------A---------------------------------------AACA-----------A-----------AAAAAAAT-------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
.........................................................................................................................................................CAAAAA--------------AAA----AA-------------------A---------------------------------------AACA-----------A-----------AAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
AAAAAAGGAAAAGGAAA--C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
TAAAACAGAAAAGTTTAAT---A---------------------------------------------------AAAAA------------------------------------------------------G-------------AAACTACAAAAA--------------AAT----AA-------------------A---------------------------------------TACA-----------AA-----AGAAATAAATAAA-------------------------------------TT------------------------------------------------------------TAAA-----A------------AAAACAAAACG------------------AA------------------------------------AAA-----------------------------ATCGAC------TAAGTAC---------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG-CTGATTA------------------------------------------------------------------------------------------------CCTCATCAAACGGAAGAAGGAAG-----------------------------------------------------------------------------G-----------AAGAAACCCAACAGGACA--TCTAACTAA---GGAA---GACAGGATACSizeHit CountTotal NormTotal
No Reads
droKik1
TAAGAAATAAAACAACA--TTTA----------------------------------------------------ATGTA-----------------TAGAAA-----------------------------------------------------------ATGTAACATCA---------TAATTAAAACCTG-------------------------------------------------------------------------------------------------------------------------------------------------------TAACAAAGCTAGAGCCAAGTGCGGAATGC------------------------------------------TTAAG---A--------------------------------------------------------------------------------------------------------AAA----------------------TGT------------------------------------------------------------------------------------------------------------------------TGCTCAAAAAATATGTTGACTTAA---------------CAT----------TGTTGAG------CGA-----CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGACAGGGCAAAGATAATATAAAGTA----TAAGATGCGTASizeHit CountTotal NormTotal
No Reads
droFic1
TGAAAAAAAAAATTATA--TTTAATTAATAAAC-------------------------------------------------------TAAA--------------------------------------------------------------TATAC--------------GGG----AA-------------------A-----------------------------------AAAAAATAATAATAATAAATAAAATAAAT--------------------------------------------------------------------------------------------------------------------------------------------C------------------------GTTGG----------GTCAGAAAATACC-------------------------------------------------CAAGCAC---------------A------AACTCATCAACGAAGAGATGCCAACCATGGAGGAATTAAATAACCCGGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGACAAAGACGCAGCAAACAATACCGGTGAGTCTGTTCCAATTAGGCTTAAGAATCCTGGTGTGGGGAC----------------------------------------------------------------------------------------------------------GACTTGGATATATTCCCGT-------------CGTAAGGAGGA--------ATTATTAGCCSizeHit CountTotal NormTotal
No Reads
droEle1
AACGCTGGGAAAACAAA--AATA---------------------------------------------------A--TA------------------------------------------------------A-------------GAACTAAAATAA--------------AAT----AA-------------------A---------------------------------------TAAA-----------TA-----AAATAAAATAAAA-------------------------------------CCCAAT-----------------------------------------------------------------A------------CAAACAATGCA------------------AAAT-------------------------------------------------------------------------AAAATTTAAAAGGAAAAAAAAATGTTGTCAAACAAGACCATAGAAGACGAGA---------TGGACGAAGTAAATACCACGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCAAAGATGTAGCAAACAATCCTGTTGAGTATGTTCCAATTAGACTTAGGAATCCTGGGATAGGGAG----------------------------------------------------------------------------------------------------------AACTTGGATATATTCCCGT-------------CGTAAGGAGGA--------ATTATAAGCCSizeHit CountTotal NormTotal
No Reads
droRho1
CCGGAACATTTCGGATCCA--TT---------------------------------------------------A----------------------------------------------------------AAAT----CAGATT------------------------------------------CAC-ACAAAATAAAGTAGAAGATTTGACAGAAGAAACTAAGCAGGAAGAATTAATATTAGAAACACATAACAGAGCACATAGAAA-CGCAGAAGAAAACAAAAACCAACTTGCAGACAAATATTATTTCCCCAAAATGAAACAAAAAATAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------CATTAGT------CAA-----AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCAGGGSizeHit CountTotal NormTotal
No Reads
droBia1
TAAGAGACTGCTTTAAA--TATG---------------------------------------------------T---------------------------------------------GCAAAAATACAAA----AAA-----------------------------------ATAA---------------------------------------------------------------------------------------TAAAATTGA------------------------------------------------------------------------------------------------------------------------------CAAA----------------------------------------------------------------------------------ACAAAAAATATGGACTGCTTCTTAGTTCCCAATGGTAATTTTGAAA----------------------TGC------------------------------------------------------------------------------------------------------------------------TAGCCCGTAAATATGCTTATT------------------------------------------------------------TATATATGATTCACTTC-----------GAACAGTACAATAAAGTAGCCACCAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTACGCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
GGAAAAACCAAAACAACAA--CC---------------------------------------------------A----------------------------------------------------------CAGCGAAA-------------GAAAGCAAAAATAATTTCG---------CGATTCGTCCCCCGGGC------------------------------------------------------------------------------------------------------------------AGAGCTTTAAAAAAAGTCGCAGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCGGGGAGAAAGGGAGG---------AGGAGAAAGGAGGAGACAGGGGG-------------------------------------------------TGGCAGGAAGTGAGAAAGAGAGAAGACGGGGCTTGCGCAGGCGCCTGGAAGA-------------------------------ATCCGAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------AGAAAGAAAGA---------GCGAGAGGCSizeHit CountTotal NormTotal
No Reads
droEug1
TAGAAATAAGTCGGGAATA--GT---------------------------------------------------T----------------------------------------------------------TTAC----CATATT------------------------------------------TAA-TCAGAA------------------------------------------------------------------------------------------------------------------ATGACACCAAAATAAATTATAAATTAAAAATATTAATTGACAAAGGGACAACCTCGGGTTAT------------------------------------------ATTAG---A--------------------ACAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAAAAATAAGA--------------------------------------------------------------------------AGAGCTTC-----------TAA-------------------------------------------------------------------------------------------------TATATAAAAGAGTAACCACAGTAAAT--------------------------------------------------------------------------------------------------------------GGTTASizeHit CountTotal NormTotal
No Reads
dm3
AAGAAAATCGCATAGCA--GACG---------------------------------------------------CATTGT-----------------CAAGA---ATTACACAAATATC------------TA----AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------------------------------GA------------------TA-----------AAATTAAG---GAAGTATTCCATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGATGAGATAT-----------------------------------------------------------------------------A-----------TGTAAGTTCAACCGCAGA--AACAAGAGAGAATGGTGATTGCATACAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAG---GAAGTATTCCATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGA..................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCGCATAGCA--GACG---------------------------------------------------CATTGT-----------------CAAGA---AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACCGCAGA--AACAAGAGAGAATGGT.............2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000100000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG---GAAGTATTCCATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGATG................................................................................................................................................2716.0060000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATAT-----------------------------------------------------------------------------A-----------TGTAAGTTCAACCGCA.................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGTTCAACCGCAGA--AACAAGAGA....................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000101000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACCGCAGA--AACAAGAGAG...................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGATGAGATAT-----------------------------------------------------------------------------A-----------TGTAAG...........................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000003000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTCAACCGCAGA--AACAAGAGA....................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCAGA--AACAAGAGAGAATGGT.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAT-----------------------------------------------------------------------------A-----------TGTAAGTTCAACCGCAGA--AA...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACCGCAGA--AACAAGAGAGAATGGTGA...........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................AAGA---ATTACACAAATATC------------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......TCGCATAGCA--GACG---------------------------------------------------CATTGT-----------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATAT-----------------------------------------------------------------------------A-----------TGTAAGTTCAACCGCA.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................CAAGA---ATTACACAAATATC------------TA----AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------------------------------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATAT-----------------------------------------------------------------------------A-----------TGTAAGTTCAACCGCAGA--.............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCAGA--AACAAGAGAGAATGGTGA...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGAAAAAAAAAAATCTTGT---A---------------------------------------------------CCGAATTATAACACTTAA---------------------GATCTAAACGAAGGT------------------------------------------------------------------------------------------------------------------------------------------------ACAT------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTACATTAAATAAAAG-------------------AATTATAACGATGAAGGCGGAAAAAATGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTA-------------------------------ATACGCATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................TTAA---------------------GATCTAAACGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.................GT---A---------------------------------------------------CCGAATTATAACACTTAA---------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
droSec2
TAGCACAATACTAAAGATA--CT---------------------------------------------------A----------------------------------------------------------AAATGCTA------GTAC------AAT-ATTA---------AAATTGCAT----------------------------------------------------------GGTT-----------CA-----A----------------------------------------------------------------------------A---------------------------------------------------------AGCG--------------------AAA----------------------------------CCGTTGAAAGCTCC-----------------------------------TAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------TATTAGG------AAA-----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGAAGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TAAAAATATAAAAATTAAATTCG---------------------------------------------------A---TTAGTCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----------------------TGC------------------------------------------------------------------------------------------------------------------------TTATCACAGAATAGGCCTATACAGGCAGAAACAATTCAAAGGCATGTATCAACATTAGT------CG--------ACTGCTTTAA-------------TGAAGCACGAAAACTAGTATAC-GAAC---------------------------------------------------------------------------------------------ATGGGAAAACA--------------------------------------------------------------------------------------------------------------------ATTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTAAAAAGAACAAAAAT--ATCA---------------------------------------------------A--------------------------------------------------------------CAAA------TAAT---TAAAAC-A------------TTAAATGA------------------------------------------ACTAATTAGGCGGCG--------------------------------------------------------------------------------T-----------------TAAAACT------------------------------------------------------------------------------AAA----------------------------------T-----------ACCT-----------------------------------A-----------------AGACT----------------------CCT------------------------------------------------------------------------------------------------------------------------CCAGCGGACA---------------------------------------------------------ATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATTTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 03:39 PM