ID:

dvi_9573

 Coordinate:

scaffold_12932:2082320-2082470 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.1 -24.1

Flybase annnotation

CDS [Dvir\GJ14895-cds]; exon [dvir_GLEANR_15126:3]; intron [Dvir\GJ14895-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12726:1825597-1825615 -
  2. scaffold_12855:8901327-8901345 +
  3. scaffold_12875:3302849-3302867 +
  4. scaffold_12928:2160891-2160909 +
  5. scaffold_12932:1271118-1271136 +
  6. dvi_9573  scaffold_12932:2082422-2082440 +
  7. scaffold_13045:150260-150278 -
  8. scaffold_13047:10152135-10152153 -
  9. scaffold_13049:7870992-7871010 -
  10. scaffold_13049:22439354-22439372 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGATCCATGCCGCTTCACAAATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGTACCCACACATTTAAGCGCTTGCTGCACTCGTTGCCAAATGCCAAAAATACCAACGCTAAGTGCCTAAATGAGGCTAACAGCAACACAAAAAAAAAAAAAAAAAACTTAAAAAAAAAGAAACCTGAACTCGTTTCAAGCGCCAGGCGCATGGCCTTCTGCATGTTCTTGTCCTGGTTCCAGATCGCGCTGCTAACG
**************************************************(((......)))........(((((((..((((((((((.................)))))...)))))..((((((((((...))).......................(((.......))).........)))))))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060687
9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060666
160_males_carcasses_total
 M047
female body
 SRR060659
Argentina_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
............CTTCACAAATGGACTGGATGG.......................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
......................................CTGAAAAGGATGGTGAGTA.................................................................................................................................................................................................. 19 2 4 0.25 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTCCAGGTCGCACTGATAAC. 20 3 4 0.25 1 0 0 1 0 0 0 0 0
....................................GCCTCAGAAGGATGGTAAG.................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 1 0 0 0 0
........................................................................................................................................................AAAAAAAACTTAAAAAAAA................................................................................ 19 0 10 0.10 1 0 0 0 0 1 0 0 0
.......................................TAAAATGGATGGTGCGTA.................................................................................................................................................................................................. 18 2 14 0.07 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................CGAATCGCATGGCCTTCTGC.................................... 20 3 17 0.06 1 0 0 0 0 0 0 1 0
.................................................................................................................................GTAACAGCAGCACAAAAAAA...................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 1
....................................................................................................................................ACAGGATCACAAAAAAAAAA................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................CACAAAAAAAAAAAAAAAAA............................................................................................ 20 0 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

GCTAGGTACGGCGAAGTGTTTACCCGACGAACCTAACGGAGTTTACCTACCACTCATGGGTGTGTAAATTCGCGAACGACGTGAGCAACGGTTTACGGTTTTTATGGTTGCGATTCACGGATTTACTCCGATTGTCGTTGTGTTTTTTTTTTTTTTTTTTGAATTTTTTTTTCTTTGGACTTGAGCAAAGTTCGCGGTCCGCGTACCGGAAGACGTACAAGAACAGGACCAAGGTCTAGCGCGACGATTGC
**************************************************(((......)))........(((((((..((((((((((.................)))))...)))))..((((((((((...))).......................(((.......))).........)))))))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060689
160x9_testes_total
 GSM1528803
follicle cells		 V116
male body
.....................................................................................................TTGTGGTTGGGATACACGGA.................................................................................................................................. 20 3 3 0.33 1 1 0 0 0 0
.........................................................................GAACGACTTGTGCAACTGTTTA............................................................................................................................................................ 22 3 3 0.33 1 0 1 0 0 0
.......................................................................GTGGACGACGGGAGCAACGGT............................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0
..................................................................................TAGCAACGGTTTACGGGTGTT.................................................................................................................................................... 21 3 10 0.10 1 0 0 0 1 0
.......................................................ATCGGTGTGTAAATTCGTGTA............................................................................................................................................................................... 21 3 15 0.07 1 0 0 1 0 0
..........................................TTACTGACCACTCATGAGT.............................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 1
...............................................................................................................................CCGCTTGTCGTTGTGTGTTAT....................................................................................................... 21 3 19 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12932:2082270-2082520 + dvi_9573 CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------ACC------------------------------------C----ACACA---------TTTAAGCGCTTGCTGCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGCCAAATGCCAAAAATACCAACGC-TA-A----------GTGCCTAAATGAGGCTAACAGCA---------ACACAAAAAAAAAAAAA---------------------AA-----AAA-CTTAAA--------AA-AA-AAGAA-A------CCT-----------------GAACTCG------TTTCA--AGCGCCAGGCGCATG---GCCTT----------------------CTGCATGTTCTTGTCCTGGTTCC----AGATCGCGCTGCTAACG
droMoj3 scaffold_6473:5648011-5648274 + CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------ATA------------CCAAAGCACACACACACAAACACAC----ACACA---------TATACACACTTGCTGAACT-------------------GTAGCAAAAATTTGCAATTGCCAAAT---------------------------------------------------------------------------GTGCCAAA-AATGGGGCCAACA------------------------------------------------------------------------------ACA---------AC-------------AG---------------------CA-----ACA-ATAGCA--------AC-CA-A-----A------TCT-----------------GAACTCG------TTTGGTGTGCGCTAGGCGCATG---GCCTTCAG----CTGGTTAGCT----------GGTTCTTGTCCTGGTTTC----GGTTTGCTCAACTAACG
droGri2 scaffold_15203:6436164-6436461 - CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------ACACTCATAGTCATACCCACACACACACACACA----CACACACACACACCGCACTCGTTT--ACGCTTGCCAAACT-------------------GCAGTAAACATTTGCAATTGCCAAAT-------------------------------------------------ACCAAATACCAAAATCCAAACCAAAAGTGTCAAAAAATTAGGTCGCCA------------------------------------------------------------------------------------------------------------------------------------------AC------------------A-----ACAGCAACACT-----------------GAACTCG------TTTCA--ACCGCAAGGAGCTTAGGAGTCTTCTGATCGCT-GTTCGCT-----------GTTCTTGTCCTGATTTCATCGCGTT---T---CTAACA
droWil2 scf2_1100000004909:11637029-11637208 + ACTTT-CAATTGA-TT------GATGGCTCC-----ATTGCATAA-GGACCTGGTCAAT---------ATA------------ACC----------------------------------------------------------------------------------------------------------------------------A--CCCAAAAACCAAAAT---------------------------------------------------------------------G------------------------------------------------------------GCAAAAAACA---------AGCAAAAAAAAAAAAAG---------------------CG-----AAA-CTAAAA---------AAAA-CAAAG-G------ATT-----------------GCAATTG------C-----------------------AGGGTTTCCAATGCT-ATGGGTT------TCTTTTTTTTTTTTTTG-----GGCTTCTT---TCA----AAT
dp5 XL_group1e:1455510-1455742 + CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTAAGC---------TGGCT-----------------------------------------------------------------------------------------------------------------------------GCGGCCA--AGTGCCTGTG----------------------------------------------------------------------CAACACATAAAATTTGGCTGCCAT-----------------------------------------------------------------------------------GTAGTTAGCAAACT--GTAGCAGCAGCCA--AT----GGGGGTC-------A-----ATTGGAACATTCGACTCGGCTTGGCCGCGAACTCG------TTTT----------------------------GTCCGCT-GTCCGCAGTCCACTGTCTGCTCTTTTTTCG-----GTCCTGTT---TGGGGTAACG
droPer2 scaffold_18:295485-295717 + CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTAAGC---------TGGCT-----------------------------------------------------------------------------------------------------------------------------GCGGCCA--AGTGGCTGTG----------------------------------------------------------------------CAACACATAAAATTTGGCTGCCAT-----------------------------------------------------------------------------------GTAGTTAGCAAACT--GTAGCAGCAGCCA--AT----GGGGGTC-------A-----ATTGGAACATTCGACTCGGCTTGGCCGCGAACTCG------TTTT----------------------------GTCCGCT-GTCCACTGTCCGCAGTCCGCTCTTTTTTCG-----GTCCTGTT---TGGGGTAACG
droAna3 scaffold_13250:1005501-1005626 - GGATG-GTTACATACGCTCA--ACT-------------------------------------TTATAT------------------------------------------------------------------------TCTCGTTGCA--GTTTGCCTAAATTTGAGAACAAG--------------------------TCCC--AGTATACAAA----------------------------------------------------------------------AGACAAATA-------------------------------------------------------------------AAACA---------AAATCGAAAAACA-------AAAA--------------GA-----AAA-TTTAAA--------AA-AA-AAC---------------------------------------A--------------------------------------------------------------------------------------------------A
droBip1 scf7180000395563:70839-70951 + TTTTA-GC----------------------------------------GAT-------------TCCT------------------------------------------------------------------------GCACG-CGATTTCCACGGAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAACAACAA-AA-A----------TTACATCAACA---------ACAACGACAACTACAA-----------------------AAAT--ACAAAAAAAGCCA--AC----ATA----AAAAAAA-C-A--------------------------------------AA--------------------------------------------------------------------------------------------------A
droKik1 scf7180000302517:650754-650871 - TTGAT-GA-------------------ACCGTTAGTTAAGCACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAACAACGGCCACAATGGCTAATAAAAC---------ATTAACAGCAGCCACGCACACACATAAAAAGA-------------------------AAAAGA-AAA-C--AAA------AAAA----AAGAA-T------CAT-------------------------AA--------------------------------------------------------------------------------------------------A
droFic1 scf7180000454073:2778838-2778925 + GCAAA-GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------AAAAAAAAAAAA---TAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------G-AA-A-AAAATTTGAATATT----TTCATTTGAATCTGAATCTG------TC-----------------------------------------------------------------TCGCTTT-----CATC---TCGGCCAACG
droEle1 scf7180000491001:621561-621667 - CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------GCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCTTAAATTTCGGCCTTTAG-----------------------------------------------------------------------------------TTGATCTGCAAGTT--------------------------------------GCCAA-C------TGC-------------------------AA--------------------------------------------------------------------------------------------------A
droRho1 scf7180000778338:6649-6754 + CAAAA-AC------TAAACA--AATAAAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-T----------GTACATAAATA-------AAACA---------AAATAATAATACA-------A------AAACCTTTAAAAA-----AAA-TTTACAG--------A-AA-AAAAA-C------ATT-----------------AAAATTA------TTTCT--A---------------------------------------------------------------------------------------G
droBia1 scf7180000302187:598214-598309 + GTCAA-AC----------------------------------------GCCTGCAGGCC---------AAA------------TCT----------------------------------------------------------------------------------------------------------------------------A--AGTACAAACTAATAA---------------------------------------------------------------------G------------------------------------------------------------GTTTGGAGCA---------TTACAAAAAATATTAAA---------------------CA-----AAT-TTTACAT--------A-AA-AAAAT-A------CCT-----------------A---------------------------------------------------------------------------------------------------------AGC
droTak1 scf7180000415659:225495-225602 - ATATATTCCGCCGATTTCCT--CACCCCTCGTTTGCAATAAATCGCAAAGATTAA--GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAGGCTGAAAAAAACCAAGAAAAAAAAAGAAAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA--------AA-AA-G-----A------AG--------------------------AA--------------------------------------------------------------------------------------------------A
droEug1 scf7180000409271:211544-211603 + CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------GCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
dm3 chr2R:475442-475567 + TTGTA-AT----------------------------------------CCCTTAAGTTAATGCCCCCCACC------------------------------------C----AAACA---------TTTAA-----------------------TTATTGTCCACATGGACAGATTTTAAATTAATAAATAGATCGTTACAAAAAAA----------------------------------AAAAAAAAAAAA---AAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------A-AA-AAAAA-A------AC--------------------------TA--------------------------------------------------------------------------------------------------A
droSim2 x:16275717-16275773 + CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_2:66233-66354 + GTACC-CAGACTCTTGCTCC--TTCACCCCTCCTGGCTA--------------------------------------------------------------------------------------------------------------------AGG----------------------------------------------------A--AGTCAAATATACTGACGTTCGGA-----------------------------------------------------------------------------------------------------------------------------AATACCA---------A-ACAAAAAAAAAAAAA--------C---AC--AAC------------AC----GGC------AA-AT-CAGAA-A------CCC-----------------GA-------------------------------------------------------------------------------------------------TCGGTTAAAG
droYak3 X:12964610-12964746 + GAAGG-T--GGCAATTGAGACAACTCAACG--------------------------------CTTTCT------------------------------------------------------------------------GCCCGCCGATTTGGATGGCAAACAAATAAAAGAAGTTCAAGTCAATCAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAACAGCA---------AATCAAAAAAAAAACAG--------CAAAAA--ACA------------AC----AAC--------AAA-A------------------------------------AAAGAA--------------------------------------------------------------------------------------------------A
droEre2 scaffold_4929:26161437-26161544 + CCAAA-TAACAATAACAACA--AATAAATAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTCAAATA---------ACAAAAAAAAAAAAAAA----------AAAA--AAT------------AC----ATC--------AAA-A------------------------------------TGACAACCGTA-----------------------------------------------------------------CCACCCC-----TGTC---ATGTCCCAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------ACC------------------------------------C----ACACA---------TTTAAGCGCTTGCTGCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGCCAAATGCCAAAAATACCAACGC-TA-A----------GTGCCTAAATGAGGCTAACAGCA---------ACACAAAAAAAAAAAAA---------------------AA-----AAA-CTTAAA--------AA-AA-AAGAA-A------CCT-----------------GAACTCG------TTTCA--AGCGCCAGGCGCATG---GCCTT----------------------CTGCATGTTCTTGTCCTGGTTCC----AGATCGCGCTGCTAACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------AA-----AAA-CTTAAA--------AA-AA-A.............................................................................................................................................19100.101001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CACAAAAAAAAAAAAA---------------------AA-----AA....................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------ATA------------CCAAAGCACACACACACAAACACAC----ACACA---------TATACACACTTGCTGAACT-------------------GTAGCAAAAATTTGCAATTGCCAAAT---------------------------------------------------------------------------GTGCCAAA-AATGGGGCCAACA------------------------------------------------------------------------------ACA---------AC-------------AG---------------------CA-----ACA-ATAGCA--------AC-CA-A-----A------TCT-----------------GAACTCG------TTTGGTGTGCGCTAGGCGCATG---GCCTTCAG----CTGGTTAGCT----------GGTTCTTGTCCTGGTTTC----GGTTTGCTCAACTAACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................ACACACACAAACACAC----ACAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------ACACTCATAGTCATACCCACACACACACACACA----CACACACACACACCGCACTCGTTT--ACGCTTGCCAAACT-------------------GCAGTAAACATTTGCAATTGCCAAAT-------------------------------------------------ACCAAATACCAAAATCCAAACCAAAAGTGTCAAAAAATTAGGTCGCCA------------------------------------------------------------------------------------------------------------------------------------------AC------------------A-----ACAGCAACACT-----------------GAACTCG------TTTCA--ACCGCAAGGAGCTTAGGAGTCTTCTGATCGCT-GTTCGCT-----------GTTCTTGTCCTGATTTCATCGCGTT---T---CTAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACTTT-CAATTGA-TT------GATGGCTCC-----ATTGCATAA-GGACCTGGTCAAT---------ATA------------ACC----------------------------------------------------------------------------------------------------------------------------A--CCCAAAAACCAAAAT---------------------------------------------------------------------G------------------------------------------------------------GCAAAAAACA---------AGCAAAAAAAAAAAAAG---------------------CG-----AAA-CTAAAA---------AAAA-CAAAG-G------ATT-----------------GCAATTG------C-----------------------AGGGTTTCCAATGCT-ATGGGTT------TCTTTTTTTTTTTTTTG-----GGCTTCTT---TCA----AATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTAAGC---------TGGCT-----------------------------------------------------------------------------------------------------------------------------GCGGCCA--AGTGCCTGTG----------------------------------------------------------------------CAACACATAAAATTTGGCTGCCAT-----------------------------------------------------------------------------------GTAGTTAGCAAACT--GTAGCAGCAGCCA--AT----GGGGGTC-------A-----ATTGGAACATTCGACTCGGCTTGGCCGCGAACTCG------TTTT----------------------------GTCCGCT-GTCCGCAGTCCACTGTCTGCTCTTTTTTCG-----GTCCTGTT---TGGGGTAACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTAAGC---------TGGCT-----------------------------------------------------------------------------------------------------------------------------GCGGCCA--AGTGGCTGTG----------------------------------------------------------------------CAACACATAAAATTTGGCTGCCAT-----------------------------------------------------------------------------------GTAGTTAGCAAACT--GTAGCAGCAGCCA--AT----GGGGGTC-------A-----ATTGGAACATTCGACTCGGCTTGGCCGCGAACTCG------TTTT----------------------------GTCCGCT-GTCCACTGTCCGCAGTCCGCTCTTTTTTCG-----GTCCTGTT---TGGGGTAACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................AAACT--GTAGCAGCAGCTT--...................................................................................................................................................................18190.051010000
droAna3
GGATG-GTTACATACGCTCA--ACT-------------------------------------TTATAT------------------------------------------------------------------------TCTCGTTGCA--GTTTGCCTAAATTTGAGAACAAG--------------------------TCCC--AGTATACAAA----------------------------------------------------------------------AGACAAATA-------------------------------------------------------------------AAACA---------AAATCGAAAAACA-------AAAA--------------GA-----AAA-TTTAAA--------AA-AA-AAC---------------------------------------A--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................AATTTGAGAACAAG--------------------------TCCC--AGT..........................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
.................................................................................................................................................TTGCA--GTTTGCCTAAATTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100
..............................................................................................................................................................CTAAATTTGAGAACAAG--------------------------TCCC--AGT..........................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
................................................................ATAT------------------------------------------------------------------------TCTCGTTGCA--GTTTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................................................................GTTTGCCTAAATTTGAGAACAAG--------------------------TCCT--.............................................................................................................................................................................................................................................................................................................................................................................................27200.051000001
..........................................................................................................................................................TTGCCTAAATTTGAGAACAAG--------------------------...................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................................................TGCCTAAATTTGAGAACAAG--------------------------TCCA--.............................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
..............................................................TTATAT------------------------------------------------------------------------TCTCGTTGCA--GTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..............................................................TTATAT------------------------------------------------------------------------TCTCGTTGCA--GTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
droBip1
TTTTA-GC----------------------------------------GAT-------------TCCT------------------------------------------------------------------------GCACG-CGATTTCCACGGAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAACAACAA-AA-A----------TTACATCAACA---------ACAACGACAACTACAA-----------------------AAAT--ACAAAAAAAGCCA--AC----ATA----AAAAAAA-C-A--------------------------------------AA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TTGAT-GA-------------------ACCGTTAGTTAAGCACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAACAACGGCCACAATGGCTAATAAAAC---------ATTAACAGCAGCCACGCACACACATAAAAAGA-------------------------AAAAGA-AAA-C--AAA------AAAA----AAGAA-T------CAT-------------------------AA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
GCAAA-GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------AAAAAAAAAAAA---TAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------G-AA-A-AAAATTTGAATATT----TTCATTTGAATCTGAATCTG------TC-----------------------------------------------------------------TCGCTTT-----CATC---TCGGCCAACGSizeHit CountTotal NormTotal
No Reads
droEle1
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------GCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCTTAAATTTCGGCCTTTAG-----------------------------------------------------------------------------------TTGATCTGCAAGTT--------------------------------------GCCAA-C------TGC-------------------------AA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
CAAAA-AC------TAAACA--AATAAAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-T----------GTACATAAATA-------AAACA---------AAATAATAATACA-------A------AAACCTTTAAAAA-----AAA-TTTACAG--------A-AA-AAAAA-C------ATT-----------------AAAATTA------TTTCT--A---------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droBia1
GTCAA-AC----------------------------------------GCCTGCAGGCC---------AAA------------TCT----------------------------------------------------------------------------------------------------------------------------A--AGTACAAACTAATAA---------------------------------------------------------------------G------------------------------------------------------------GTTTGGAGCA---------TTACAAAAAATATTAAA---------------------CA-----AAT-TTTACAT--------A-AA-AAAAT-A------CCT-----------------A---------------------------------------------------------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droTak1
ATATATTCCGCCGATTTCCT--CACCCCTCGTTTGCAATAAATCGCAAAGATTAA--GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAGGCTGAAAAAAACCAAGAAAAAAAAAGAAAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA--------AA-AA-G-----A------AG--------------------------AA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------GCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
dm3
TTGTA-AT----------------------------------------CCCTTAAGTTAATGCCCCCCACC------------------------------------C----AAACA---------TTTAA-----------------------TTATTGTCCACATGGACAGATTTTAAATTAATAAATAGATCGTTACAAAAAAA----------------------------------AAAAAAAAAAAA---AAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------A-AA-AAAAA-A------AC--------------------------TA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
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droSim2
CGATC-CATGCCGCTTCACA--AATGGGCTGCTTGGATTGCCTCAAATGGATGGTGAGT---------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GTACC-CAGACTCTTGCTCC--TTCACCCCTCCTGGCTA--------------------------------------------------------------------------------------------------------------------AGG----------------------------------------------------A--AGTCAAATATACTGACGTTCGGA-----------------------------------------------------------------------------------------------------------------------------AATACCA---------A-ACAAAAAAAAAAAAA--------C---AC--AAC------------AC----GGC------AA-AT-CAGAA-A------CCC-----------------GA-------------------------------------------------------------------------------------------------TCGGTTAAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAAGG-T--GGCAATTGAGACAACTCAACG--------------------------------CTTTCT------------------------------------------------------------------------GCCCGCCGATTTGGATGGCAAACAAATAAAAGAAGTTCAAGTCAATCAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAACAGCA---------AATCAAAAAAAAAACAG--------CAAAAA--ACA------------AC----AAC--------AAA-A------------------------------------AAAGAA--------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CCAAA-TAACAATAACAACA--AATAAATAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTCAAATA---------ACAAAAAAAAAAAAAAA----------AAAA--AAT------------AC----ATC--------AAA-A------------------------------------TGACAACCGTA-----------------------------------------------------------------CCACCCC-----TGTC---ATGTCCCAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACCGTA-----------------------------------------------------------------CCACCCC-----TGTC---ATGTCC....2812.0020000002
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...............................................................................................................................................................................................................................................................................................................................................................................A---------ACAAAAAAAAAAAAAAA----------AAAA--AA................................................................................................................................................................................24200.0510000010
..........................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAA----------AAAA--AA................................................................................................................................................................................22200.0511000000

Generated: 05/19/2015 at 03:48 PM