ID:

dvi_9548

 Coordinate:

scaffold_12932:1917100-1917250 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6 -16.6 -16.5

Flybase annnotation

CDS [Dvir\GJ14707-cds]; exon [dvir_GLEANR_14947:4]; intron [Dvir\GJ14707-in]; Antisense to intron [Dvir\GJ14882-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGTTTTTGTTTCTTTTTTTTTTTTTTGTACCGTCATTAATTGCATTTTGGAGCAGCTGCTAATTGTGTCTGGGTTGTTGTGCAGAGCAACAAAAATTGATCGCAAGCAATATGCAAAAGCAGGCGTTATTCAATTATTATAAAATCGTTAACCAATTAACAGAATCCAAATTCTTACAAGTAATCCCTATATCTTGCAGATGTCCGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTT
***********************************************************************(((((((((((.....))))))..((((((.(((..((...........))..)))....)))))).........(((((((....))))).))))))).............******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060678
9x140_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060658
140_ovaries_total
 SRR060688
160_ovaries_total
 M027
male body		 SRR060655
9x160_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060663
160_0-2h_embryos_total
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 M028
head
 GSM1528803
follicle cells
...............................................................................................................................................................................................................................GCAGCGTTGGCATGAATGCGG....... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGGTTGTTGTGCAGAGCAAC............................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TATCTTGCAGATGTCCGAGTGCGT.................................... 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAACAGAATCCAAATTCTTACAAGT.................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TATCTTGCAGATGTCCGAGTGC...................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGTGTCTGGGTTGTTGTGCA...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGTCCGAGTGCGTGAAATGG............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTGCAGATGTCCGAGTGCGTGAAAT............................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGCGTTGGCATGAATGCGGGCATGTT 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGGTTGTTGTGCAGAGCAAA............................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGCGT..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............TTTTTTTTTTTTTGTACCGTCATTAAT................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGAGTGCGTGAAATGGGGC.......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GAGTGCGTGAAATGGGGCAGC....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CAGCTGCTAATTGTGTCTGGG................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGATGTCCGAGTGCGTGAAAT............................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TTTGTAGCAGCTGCTAATTGTGTCTGG................................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTTGTTGTGCAGAGCAACA.............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTGCATTTTGGAGCAGCTG............................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TAATTGTGTCTGGGTTGTTGTGC....................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGCAGATGTCCGAGTGCGTGAAAT............................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCCGAGTGCGTGAAATGGGGC.......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AAGCAATATGCAAGGGCAGGC............................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ACAAAAATTGATCGCAAGC.............................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGTGCAGAGCAACAAAAAT......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAACAAAAATTGATCGCAAGC.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCCGAGTGCGTGAAGTGGGGC.......................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AATTGTGTCTGGGTTGTTT.......................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GCAGAGCAACAAAAATTG....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGCAGATGTCCGAGTGCGTG................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGCGTTGGCATGAATGCGGGCT.... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGTCTGGGTTGTTGTGCAGA.................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTGTGTCTGGGTTGTTGTGC....................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGCAGGCGTTATTCAATT.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................GCAGCTGCTAATTGTGTCTGGGTTC............................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCATTAATTGCATTTTGGAGC.................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATCTTGCAGATGTCCGAGTGCG..................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................TGGAGCAGCTGCTAATTGTGTC.................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGCATTTTGGAGCAGCTGCT............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGCAGATGTCCGAGTGCGTGA.................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TAATTGTGTCTGGGTTGTTGT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................ATTGTGTCTGGGTTGTTGTGC....................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGTGTCTGGGTTGTTGTGCAT..................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TCTGGGTTGTTGTGCAGAGCA................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TGCAGAAGCAGGCGTACTTCAA.................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTGGCATGAATGCGGGC..... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGCATGAGTGCGGGCATG.. 20 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGTTGGCATGAATGCGGGC..... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................ATATTGCGGATGACCGAGTGC...................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................GATGGCATGAATGCGGGT..... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................GAATCCAAACTCTGACAA...................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AGAATCCAAACTCTGACA....................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................ACTAATTAACACAATCCAGA............................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................TCTGGGTTGTTGTCCCGTG................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAACAAAAACAAAGAAAAAAAAAAAAAACATGGCAGTAATTAACGTAAAACCTCGTCGACGATTAACACAGACCCAACAACACGTCTCGTTGTTTTTAACTAGCGTTCGTTATACGTTTTCGTCCGCAATAAGTTAATAATATTTTAGCAATTGGTTAATTGTCTTAGGTTTAAGAATGTTCATTAGGGATATAGAACGTCTACAGGCTCACGCACTTTACCCCGTCGCAACCGTACTTACGCCCGTACAA
********************************************************************(((((((((((.....))))))..((((((.(((..((...........))..)))....)))))).........(((((((....))))).))))))).............*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M028
head
 SRR060677
Argx9_ovaries_total
 M061
embryo
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 V116
male body		 SRR060668
160x9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
..................................................................................................................................................................................................GAACGTCTACAGGCTCACGCAC................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGGTTAATTGTCTTAGGTTTAAGAAT......................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTCCGCAATGAGTTAATAATA............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAGCGTTCGTTATACGTTTTC.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACACGTCTCGTTGTTTTTAACTAGCGTT................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GGTTAACACAGACCCAACCACACGTC..................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCCCGTCGCAACCGTACTTA........... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAGGCTCACGCACTTTACCC............................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................CATGGCAGTAATTAACGTAAA.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGCTCACGCACTTTACCCCGT......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................ACCTCGTCGGCGATTAACACA..................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CACGCACTTTACCCCGTCGCA..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGCGGTTGGTTAATTGTCTT..................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................GCAACCGTACTTACGCCCGT.... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTACCGTACTTACGCCCGTAC.. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGCAATGGGTTAAGTGTCATA.................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................AGCAATGGGTTAAGTGTC....................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................TAGGTTTAAGGATGTTCGTT.................................................................. 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................CTGTAGCAAATGGTTAATTG......................................................................................... 20 3 18 0.11 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..................AAAAAAAAAACATGGTCGTAA.................................................................................................................................................................................................................... 21 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................AAAAAAAGAATGGCAGTAGTT.................................................................................................................................................................................................................. 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................GATTACCGCAGACCCATCA............................................................................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AAGCAATGGGTTAAGTGTC....................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12932:1917050-1917300 - dvi_9548 TTTGTTTTTG------------TTTCTTTTTTTT-TTTTTTGTAC-------------------------------C-GTCATTAAT--TGCATTTTGGAGCAGCTGCTAATTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAGAGCAACAAAAATTGATCGCAAGCAATATGCAAAAGCAG-----GCGTTATTCAATTAT--TATAAAATC------------------------G-TTAACCAATTAACAGAAT--CCAAATTCTTACAA---GTAATCCCTATATC-----TTGCAGATGTCCGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTT
droMoj3 scaffold_6498:876367-876543 + TTCATATTTA------------TTTGTTTTCTTTTTTTTCTCATG-------------------------------CTTTCATAAATGTTTGAAATTGATGAAGTTGTTAATCGTAATTT-TACTGT-----------GCTGTTCAAAATGACGCCAAATGAAAATAATGATTCA--------------------------------AG----C----AATT------------------ACAACTTTAAAAAAT----AGAAAAGAGATA----------------------------------------------------------------AACGAA-TCT-CAAA-TTTTATAA----------------------------------------------------------------------------AT
droGri2 scaffold_15203:1943042-1943212 + TCA-------------------------------------------------------------------------------TTAAT--GGCATTTTGG-------------------------------------------------ATAGCAGCAAATGT-----------------------------------ATGCAACAACAA----C----AAAA------------------ACAAATCAGAAAAAC----AACAACAAGAAC----------------------------------------------------------------AACAAA-AATGCAAA-TCTTACTACTTGTAATCCCTATATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTT
droWil2 scf2_1100000004909:7106411-7106665 - GTTGTTGTTGGTCATATTGTTGTTTTCTTTTTTT-TTTTCTTGGT-------------------------------T-GTTTTTAGT--TTAATTCTAAAATATTTCCTA-------------TTGC------------------------------------------------GCTGTCTCTATCATTTTGCAAAATTTCGAGATATAT-----GT---------------------------------------------ACATATGTATCTA--T-ATTCCGTTTCTGTTATGTTGTTTTGTTGTTTTTTTTTTTTTTTTGTTCTT----------------------TTCACAA---GT---AAATCTATC-----TTACAGATATCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTT
dp5 XL_group1e:8446801-8446862 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTT
droPer2 scaffold_9:2400550-2400695 + CTTGGTAGAC------------TTTTTTGATTTT-CTTTGAGCATTAATATTTGTATAATTTTGATT---------------------------TTTTGTGGAACTTTTAAACGT---------------------------------------------------------------------------------------------------------------TTTTGATACAAAAAAAAAATTAAAATAAA----CGAAAACAGAAA--GGCGTGTTTGATTTT--CATAAATTT------------------------G-TC-----------------------------------------------------------------------------------------------------------GGC
droAna3 scaffold_12903:489836-489913 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACAA---ATACAAAATCTATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAACGCGGGCATGTT
droBip1 scf7180000395952:53421-53498 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---ATACAAAATCTATC-----TTGCAGATGTCGGAGTGCGTTAAATGGGGCAGCGTCGGCATGAACGCGGGCATGTT
droKik1 scf7180000301542:308196-308255 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC-----TTGCAGATGTCGGAGTGCGTGAAGTGGGGCAGCGTTGGCATGAATGCGGGCATGTT
droFic1 scf7180000454073:899527-899601 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---GT---GAATCTATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCT
droEle1 scf7180000491278:1564065-1564248 + GTTGTCGTTC------------TTTTCTTGTTTT-TTTTTTGGGCTGGA---------AATCTTATATATGCCGGGG------------------------------------GGCTGTAGGTTCGTGCAGATGCCAG--------------------ATA---ATAATTGTTGAGTCGAT----TTATATAGCAAAATTTAATAATAA----C----ACAAACGTGTTTA-----------------------------------------------ATACAAAGAT--CATAATGTT------------------------T-ATAAT-----TACAAAAG--TTAAA--CTTACAA-----------------------------------------------------------------------------G
droRho1 scf7180000776513:18880-18954 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAA---GT---GAATCTATA-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCT
droBia1 scf7180000302041:1146231-1146313 - ACCCAGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---GT---GAATCTATC-----TTGCAGATGTCGGAGTGCGTGAAGTGGGGCAGCGTGGGCATGAATGCGGGCATGCT
droTak1 scf7180000414562:73222-73296 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATA-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCT
droEug1 scf7180000409110:1641212-1641361 + TTCCTTTTTT------------TTTTTTTTTTTT-TTGTATAG--------------------------------GG------------------------------------GTTTCGACCTTCTTGCAGGTGCTGCGTGTTTCAC---------------------------------------------------------AATGGAAAACAGGA--------AAAAG--AAA-AAAAAAAAGTAACAAGA----GCAAAAGGAA-----AAACTTTTCACTTAT--TGCGTCTTA------------------------G-ACAA------------------------------------------------------------------------------------------------------TCAATT
dm3 chrX:14099365-14099444 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCATTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCT
droSim2 x:13311168-13311247 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCATTGCAGATGTCGGAGTGCGTGAAGTGGGGCAGCGTGGGCATGAATGCGGGCATGCT
droSec2 scaffold_12:512370-512474 + TTTGTCTTAG------------TTGTTGTTGTTT-TTGTGTCGTC-------------------------------C-ATTATTCAA--------------------------------------------------------------------------------------------------------AGCATAATGTCACAATAAAC-----GT--------AAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAAATATGGCCCAAAGGCAACA--AGCAAAA----GCA
droYak3 X:17595034-17595142 + TTTGGTTTTG------------TTTTTGTTTTTT-TGGGTGG-----TA---------AACCGGGGT---------------------------TATGAAGGAGTTCTTAAGTGGATGTGGGGTTGT------------------------------------------------GCGATCATTAGCGCTACTCAAAGT-----------------------------------------------------------------------CATC-----------------------------------------------------------------------------------------------------------------------------------------------------------CGTAATCC
droEre2 scaffold_4690:12831136-12831215 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCATTGCAGATGTCGGAGTGCGTTAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTGTTTTTG------------TTTCTTTTTTTT-TTTTTTGTAC-------------------------------C-GTCATTAAT--TGCATTTTGGAGCAGCTGCTAATTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAGAGCAACAAAAATTGATCGCAAGCAATATGCAAAAGCAG-----GCGTTATTCAATTAT--TATAAAATC------------------------G-TTAACCAATTAACAGAAT--CCAAATTCTTACAA---GTAATCCCTATATC-----TTGCAGATGTCCGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGTTGGCATGAATGCGG.......2112.002001000000000000000000000000000000000001000000000000000000000000
......................................................................................................................TG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAGAGCAAC.........................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TATC-----TTGCAGATGTCCGAGTGCGT....................................2412.002000000000010000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TAACAGAAT--CCAAATTCTTACAA---GT.........................................................................2512.002000100000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TATC-----TTGCAGATGTCCGAGTGC......................................2212.002000001000000000000000000001000000000000000000000000000000000000
................................................................................................................TGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCA................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGAGTGCGTGAAATGG.............................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TC-----TTGCAGATGTCCGAGTGCGTGAAAT...............................2711.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTGGCATGAATGCGGGCATGTT2611.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAGAGCAAA.........................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGCGT.....................2111.001000000000000000000000010000000000000000000000000000000000000000
...........................TTTTTTT-TTTTTTGTAC-------------------------------C-GTCATTAAT--............................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCGTGAAATGGGGC..........................1911.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCGTGAAATGGGGCAGC.......................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CAGCTGCTAATTGTGTCTG------------------------------------------------------------------------------------GG.......................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGATGTCCGAGTGCGTGAAAT...............................2211.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................GTTGTT-----GT--------GCAGAGCAACA........................................................................................................................................................................................................1911.001000000000010000000000000000000000000000000000000000000000000000
......................................................................................T--TGCATTTTGGAGCAGCTG..........................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................TAATTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GC.................................................................................................................................................................................................................2311.001000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGTCCGAGTGCGTGAAAT...............................2511.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGTGCGTGAAATGGGGC..........................2111.001000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ACAAAAATTGATCGCAAGC........................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................T-----GT--------GCAGAGCAACAAAAAT...................................................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CAACAAAAATTGATCGCAAGC........................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................AATTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----T............................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................GCAGAGCAACAAAAATTG.................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGTCCGAGTGCGTG...................................2111.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTGGCATGAATGCGGGCT....2211.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAGA..............................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................TTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GC.................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AAAAGCAG-----GCGTTATTCAATT.......................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................GCAGCTGCTAATTGTGTCTG------------------------------------------------------------------------------------GGTTC....................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................TCATTAAT--TGCATTTTGGAGC...............................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATC-----TTGCAGATGTCCGAGTGCG.....................................2211.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................TGGAGCAGCTGCTAATTGTGTC...............................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................TGCATTTTGGAGCAGCTGCT........................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGTCCGAGTGCGTGA..................................2211.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................TAATTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------...................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................ATTGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GC.................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGTGTCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAT...............................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................TCTG------------------------------------------------------------------------------------GGTTGTT-----GT--------GCAGAGCA...........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCATGAATGCGGGC.....1820.501000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGGCATGAATGCGGGC.....1920.501000000000000000000000000000000000010000000000000000000000000000
droMoj3
TTCATATTTA------------TTTGTTTTCTTTTTTTTCTCATG-------------------------------CTTTCATAAATGTTTGAAATTGATGAAGTTGTTAATCGTAATTT-TACTGT-----------GCTGTTCAAAATGACGCCAAATGAAAATAATGATTCA--------------------------------AG----C----AATT------------------ACAACTTTAAAAAAT----AGAAAAGAGATA----------------------------------------------------------------AACGAA-TCT-CAAA-TTTTATAA----------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCA-------------------------------------------------------------------------------TTAAT--GGCATTTTGG-------------------------------------------------ATAGCAGCAAATGT-----------------------------------ATGCAACAACAA----C----AAAA------------------ACAAATCAGAAAAAC----AACAACAAGAAC----------------------------------------------------------------AACAAA-AATGCAAA-TCTTACTACTTGTAATCCCTATATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................AAT--GGCATTTTGG-------------------------------------------------ATAGCAGC.........................................................................................................................................................................................................................................................................................2111.00101
droWil2
GTTGTTGTTGGTCATATTGTTGTTTTCTTTTTTT-TTTTCTTGGT-------------------------------T-GTTTTTAGT--TTAATTCTAAAATATTTCCTA-------------TTGC------------------------------------------------GCTGTCTCTATCATTTTGCAAAATTTCGAGATATAT-----GT---------------------------------------------ACATATGTATCTA--T-ATTCCGTTTCTGTTATGTTGTTTTGTTGTTTTTTTTTTTTTTTTGTTCTT----------------------TTCACAA---GT---AAATCTATC-----TTACAGATATCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGC.......................1913.00300210
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCATGAATGCGGGC.....1812.00200020
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGCGTTGGC.................2512.00200200
....................................................................................................................................................................................................................................................................................................................................................................................................TATCGGAGTGCGTGAAATGGGGCAGC.......................2611.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCATGAATGCGGGCATG..2111.00100001
....................................................................................................................................................................................................................................................................................................................................................................................................TATCGGAGTGCGTGAAATGGGGCA.........................2411.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAGCGTTGGCATGAATGCGG.......2411.00100100
.........................................................................................................................................................................................................................................................................................................................................T----------------------TTCACAA---GT---AAATCTATC-----TT......................................................2111.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................TATCGGAGTGCGTGAAATGGG............................2111.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................ATATCGGAGTGCGTGAAATGG.............................2111.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................TATCGGAGTGCGTGAAATGGGGCAGTA......................2711.00101000
....................................................................................................................................................................................................................................................................................................TTATGTTGTTTTGTTGTTTTTT...........................................................................................................................2211.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGGCAGCGTTGG..................2011.00100100
dp5
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAATGCGGGCATGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCGTGAAATGGGGCA.........................2112.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCGGAGTGCGTGAAATGGGG...........................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGGCAGCGTTGGCATG..............2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGC.......................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGGCATGAATGCGGGCAT...2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................GTATC-----TTGCAGATGTCGGAGT........................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGTCGGAGTGCGTGAAA................................2411.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATGAATGCGGGCATGT.2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................AGATGTCGGAGTGCGTGAAAT...............................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGGGCAGCGTTGGC.................1911.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGCGTGAAATGGGGC..........................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGCAGATGTCGGAGTGCGTGA..................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTGGCATGAATGCGGG......2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGGCAGCGTTG...................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................TC-----TTGCAGATGTCGGAGTGCGT....................................2211.0010100000000
droPer2
CTTGGTAGAC------------TTTTTTGATTTT-CTTTGAGCATTAATATTTGTATAATTTTGATT---------------------------TTTTGTGGAACTTTTAAACGT---------------------------------------------------------------------------------------------------------------TTTTGATACAAAAAAAAAATTAAAATAAA----CGAAAACAGAAA--GGCGTGTTTGATTTT--CATAAATTT------------------------G-TC-----------------------------------------------------------------------------------------------------------GGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACAA---ATACAAAATCTATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTTGGCATGAACGCGGGCATGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................TCTATC-----TTGCAGATGTCGGAGTGCGTG...................................2711.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCATGAACGCGGGC.....1811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGGCAGCGTTGGCAT...............2311.001000001
................................................................................................................................................................................................................................................................................................................................................................................AATCTATC-----TTGCAGATGTCGGA..........................................2211.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGGCAGCGTTGGC.................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGGGCAGCGTTGGCATGAACGC.........2711.001000010
................................................................................................................................................................................................................................................................................................................................................................................AATCTATC-----TTGCAGATGTCGGAGTGCGT....................................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................ATCTATC-----TTGCAGATGTCGGA..........................................2111.001010000
droBip1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---ATACAAAATCTATC-----TTGCAGATGTCGGAGTGCGTTAAATGGGGCAGCGTCGGCATGAACGCGGGCATGTTSizeHit CountTotal NormTotal
No Reads
droKik1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC-----TTGCAGATGTCGGAGTGCGTGAAGTGGGGCAGCGTTGGCATGAATGCGGGCATGTTSizeHit CountTotal NormTotal
No Reads
droFic1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---GT---GAATCTATC-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotal
No Reads
droEle1
GTTGTCGTTC------------TTTTCTTGTTTT-TTTTTTGGGCTGGA---------AATCTTATATATGCCGGGG------------------------------------GGCTGTAGGTTCGTGCAGATGCCAG--------------------ATA---ATAATTGTTGAGTCGAT----TTATATAGCAAAATTTAATAATAA----C----ACAAACGTGTTTA-----------------------------------------------ATACAAAGAT--CATAATGTT------------------------T-ATAAT-----TACAAAAG--TTAAA--CTTACAA-----------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAA---GT---GAATCTATA-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotal
No Reads
droBia1
ACCCAGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---GT---GAATCTATC-----TTGCAGATGTCGGAGTGCGTGAAGTGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotal
No Reads
droTak1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATA-----TTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotal
No Reads
droEug1
TTCCTTTTTT------------TTTTTTTTTTTT-TTGTATAG--------------------------------GG------------------------------------GTTTCGACCTTCTTGCAGGTGCTGCGTGTTTCAC---------------------------------------------------------AATGGAAAACAGGA--------AAAAG--AAA-AAAAAAAAGTAACAAGA----GCAAAAGGAA-----AAACTTTTCACTTAT--TGCGTCTTA------------------------G-ACAA------------------------------------------------------------------------------------------------------TCAATTSizeHit CountTotal NormTotal
No Reads
dm3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCATTGCAGATGTCGGAGTGCGTGAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GCATTGCAGATGTCGGAGTGC......................................21116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGTGCGTGAAATGGGGC..........................2116.0060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000100010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAATGGGGCAGCGTGG...................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000020000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGTCGGAGTGCGTGAAATGGG............................2113.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTGCAGATGTCGGAG.........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCATTGCAGATGTCGGAGTGCGTG...................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTGGGCATGAATGCGGG......2113.0030000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CTTACAA---TC---GAATCTATATTG..........................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCATTGCAGATGTCGGAGTGC......................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCATTGCAGATGTCGGA..........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCAGCGTGGGCATGAATGCGGG......2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010100000
........................................................................................................................................................................................................................................................................................................................................................................................TTGCATTGCAGATGTCGGAGT........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCAGCGTGGGCATGA.............1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCAGCGTGGGCATGAATGCGG.......2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000
......................................................................................................................................................................................................................................................................................................................................................................A---TC---GAATCTATATTGCATTGC....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGCAGCGTGGGCATGAA............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGGAGTGCGTGAAATG..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGATGTCGGAGTGCGTGA..................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
........................................................................................................................................................................................................................................................................................................................................................................................TTGCATTGCAGATGTCGGAGTGC......................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGCGTT....................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCGTGAAATGGGGCAGC.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGGAGTGCGTGAAAT...............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTGCATTGCAGATGTCGGAGTGCGTG...................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGGCAGCGTGGGC.................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGGCAGCGTGGGCATGA.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................TATATTGCATTGCAGATGTCG............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CTATATTGCATTGCAGATGTC.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGATGTCGGAGTGCGTGAAA................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCATTGCAGATGTCGGAGTGCG.....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGCATTGCAGATGTCG............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGGCATGAATGCGGG......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAATGGGGCAGCGTGGGCATG..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCGTGAAATGGGGCA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCATTGCAGATGTCGGAGT........................................2311.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCGTGAAATGGGGC..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATATTGCATTGCAGATGTCGGAG.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAATGCGGGCATG..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TCTATATTGCATTGCAGATGTCGGAG.........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTGGGCATGAATGCGG.......2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGTCGGAGTGCGTGAAAT...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGGAGTGCGTGAAATGG.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TACAA---TC---GAATCTATATTGCAA.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGGGCAGCGTGGGCATGA.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGGCAGCGTGGGCATGAATGCGG.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TC---GAATCTATATTGCATTGCAGATGTCGGA..........................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AATCTATATTGCATTGCAGAT................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TCTATATTGCATTGCAGATGTCGGAGTG.......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGTGAAATGGGGCAGCGTGGG..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GCAGATGTCGGAGTGCGTGAA.................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGTCGGAGTGCG.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGGCATGAATGCGGGC.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................TATATTGCATTGCAGATGTCGGAGTG.......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCGTGAAATGGGGCAG........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................TATATTGCATTGCAGATGTCGGAGTGC......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGATGTCGGAGTGCGTGAAAT...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGCGTGAAATGGGGC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................TATATTGCATTGCAGATGTCGGAGT........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGATGTCGGAGTGCG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGCAGCGTGGGCATGAAA...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA---TC---GAATCTATATTGCATTGCATC.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAATGGGGCAGC.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................TATTGCATTGCAGATGTCGGAG.........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGGCAGCGTGGGCATGAATGC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTGCAGATGTCGGAGT........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA---TC---GAATCTATATTGCATTG.....................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................TGCATTGCAGATGTCGGAGTGT......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
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..........................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGTGAAATGGGGCAGCG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTGCAGATGTCGGAGTG.......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGTGCGTGAAATGGGT...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
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droSim2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCATTGCAGATGTCGGAGTGCGTGAAGTGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................TCTATATTGCATTGCAGATGTCGGAG.........................................2613.00300000000300000000
....................................................................................................................................................................................................................................................................................................................................................................................TATATTGCATTGCAGATGTCGGAG.........................................2413.00300000010200000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGAAGTGGGGCAGCGTGGGCATG..............2712.00200000000020000000
...............................................................................................................................................................................................................................................................................................................................................................................GAATCTATATTGCATTGCAGATGTCGGAGT........................................3011.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................TATATTGCATTGCAGATGTCGGAGT........................................2511.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCGTGAAGTGGGGCATT.......................2311.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGGCATGAATGCGGG......1911.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTGCATTGCAGATGTCGGAGT........................................2111.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGGGCATGAATGCGGGCATGCT2611.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGGGCATGAATGCGGGCATGC.2511.00100000000001000000
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCA........................................................2411.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGAAGTGGGGCAGCGTGGGCA................2511.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................AGATGTCGGAGTGCGTGAAGTGGGGC..........................2611.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGCAGATGTCGGAGTGCGTGAAGT...............................2411.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTGCAGATGTCGGA..........................................2011.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGAAGTGGGGCAGCGTGGAA.................2411.00100000000000010000
droSec2
TTTGTCTTAG------------TTGTTGTTGTTT-TTGTGTCGTC-------------------------------C-ATTATTCAA--------------------------------------------------------------------------------------------------------AGCATAATGTCACAATAAAC-----GT--------AAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAAATATGGCCCAAAGGCAACA--AGCAAAA----GCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTGGTTTTG------------TTTTTGTTTTTT-TGGGTGG-----TA---------AACCGGGGT---------------------------TATGAAGGAGTTCTTAAGTGGATGTGGGGTTGT------------------------------------------------GCGATCATTAGCGCTACTCAAAGT-----------------------------------------------------------------------CATC-----------------------------------------------------------------------------------------------------------------------------------------------------------CGTAATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAA---TC---GAATCTATATTGCATTGCAGATGTCGGAGTGCGTTAAATGGGGCAGCGTGGGCATGAATGCGGGCATGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGCATTGCAGATGTCGGAGT........................................2812.0020000200
.....................................................................................................................................................................................................................................................................................................................................................................................ATATTGCATTGCAGATGTCGGAGT........................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTTAAATGGGGCAGC.......................1911.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................ATATTGCATTGCAGATGTCGGAGTG.......................................2511.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGCATTGCAGA.................................................1911.0011000000

Generated: 05/19/2015 at 03:34 PM