ID:

dvi_9526

 Coordinate:

scaffold_12932:1848961-1849111 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.8 -8.8 -8.7

Flybase annnotation

CDS [Dvir\GJ14875-cds]; exon [dvir_GLEANR_15108:1]; intron [Dvir\GJ14875-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12855:1932272-1932294 +
  2. scaffold_12855:4632411-4632433 +
  3. scaffold_12875:2024300-2024322 +
  4. scaffold_12875:6965401-6965423 +
  5. scaffold_12875:9270724-9270746 +
  6. scaffold_12875:20360704-20360726 +
  7. scaffold_12928:325247-325269 +
  8. scaffold_12932:1238149-1238171 +
  9. scaffold_12963:3198669-3198691 +
  10. scaffold_12963:11407999-11408021 +
  11. scaffold_12970:2017486-2017508 +
  12. scaffold_13042:2088519-2088541 +
  13. scaffold_13042:2992582-2992604 +
  14. scaffold_13047:7436854-7436876 +
  15. scaffold_13047:12346325-12346347 +
  16. scaffold_13047:18209023-18209045 +
  17. scaffold_13049:5427890-5427912 +
  18. scaffold_13049:9725492-9725514 +
  19. scaffold_13049:22144561-22144583 +
  20. scaffold_13246:1973934-1973956 +
  21. scaffold_12723:3432020-3432042 +
  22. scaffold_12723:5633604-5633626 +
  23. scaffold_12822:2912523-2912545 +
  24. scaffold_12875:12976638-12976660 +
  25. scaffold_12875:17720982-17721004 +
  26. dvi_9526  scaffold_12932:1849017-1849039 +
  27. scaffold_12963:643410-643432 +
  28. scaffold_12963:5266354-5266376 +
  29. scaffold_12963:6087608-6087630 +
  30. scaffold_12963:11018695-11018717 +
  31. scaffold_12970:1899089-1899111 +
  32. scaffold_12970:3114356-3114378 +
  33. scaffold_13042:1297102-1297124 +
  34. scaffold_13042:4270495-4270517 +
  35. dvi_15778  scaffold_13047:6996957-6996979 +
  36. scaffold_13047:18216282-18216304 +
  37. scaffold_13049:3359867-3359889 +
  38. scaffold_13049:3761455-3761477 +
  39. scaffold_13049:4660831-4660853 +
  40. scaffold_13049:10017347-10017369 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACCCGTTCTCTATACACGTGGCACTCACTATGAGGTCGGCTTCGATATGGTAAGCAACAGCTCCTTTATCCTTTCACCTTTCAGCCGAACCCCCAACAACAACAACAATAACAACAACAACAACAACAATAACAGACCGTTGCCAAATGTCACGCTAGCTTCATTAAATTTACCCAACGCACTTGAGAAAGTTAACTGAATTTATAAGTTTAGCTTTTCTTTTGATCTAAACTGAAAATTTAACTATTTT
**************************************************...(((....))).................(((((.......................................((((...........)))).............((((((..((((...............))))..)))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060657
140_testes_total
 SRR060674
9x140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
......................................................................................................................................................TCACGCTAGCTTCAAGAAGTT................................................................................ 21 3 1 1.00 1 1 0 0 0 0
..............................................TATGGTAAGCAACGCCTCCG......................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0
..............................................................................CTTTCATCAGAACCGCCAAC......................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0
..............................................................................CTTTCATCAGAACCGCCAA.......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
..........................................................................................................CAATAACAACAACAACAACAACA.......................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0
.....................................................................................................AACAACAATAACAACAACA................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATGGGCAAGAGATATGTGCACCGTGAGTGATACTCCAGCCGAAGCTATACCATTCGTTGTCGAGGAAATAGGAAAGTGGAAAGTCGGCTTGGGGGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTATTGTCTGGCAACGGTTTACAGTGCGATCGAAGTAATTTAAATGGGTTGCGTGAACTCTTTCAATTGACTTAAATATTCAAATCGAAAAGAAAACTAGATTTGACTTTTAAATTGATAAAA
**************************************************...(((....))).................(((((.......................................((((...........)))).............((((((..((((...............))))..)))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060659
Argentina_testes_total
 V116
male body		 SRR060657
140_testes_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 V053
head
 M047
female body
 SRR060670
9_testes_total
 SRR060683
160_testes_total
 GSM1528803
follicle cells		 SRR060687
9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060669
160x9_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106715
embryo_4-6h
 SRR1106721
embryo_10-12h
 SRR060668
160x9_males_carcasses_total
.....CAAGAGATATGTGCACCGTGAGTGAT............................................................................................................................................................................................................................ 26 0 1 3.00 3 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CGAGGAAATAGGAAACTGGAAAGTCG..................................................................................................................................................................... 26 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ACCGTGAGTGCTACCCCAGC.................................................................................................................................................................................................................... 20 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CCGTGAGTGCTACCCCAGCT................................................................................................................................................................................................................... 20 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AATGTCGGCTTGGGGGTTGTTGTT.................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGGAAATAGGCAAGTGGAAGGT....................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AACTGGAAAGTCGGCTTGGGGGTTG......................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CCAGCCGAAGCTATACCATTCGT.................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GCCGAAGCTATACCATTCGTTGTCGA............................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAGATATGTTCACCGTGAGTGATACT......................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GCTTGGGGGTTGTTGTTGTT................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGTGCACCGTGAGTGATACTCCAGCCG.................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCATTCGTTGTCGAGGAAATAGGAA................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CGTTGTCGAGGAAATAGGAAACTGG............................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GGGCAAGAGATATGTGCACCGTGAGT............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAGATATGTGCACCGTGAGTGATACT......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCAAGAGATATGTGCACCGTGAGTGAT............................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GGCTTGGGGGTTGTTGTT.................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GGGCAAGAGATATGTGCACCGTG.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGTAGAGGCAATAGCAAAGTG............................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CCGTGAGTGCTACCCC....................................................................................................................................................................................................................... 16 2 16 0.31 5 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 1 0
...................ACCGTGAGTGCTACCCC....................................................................................................................................................................................................................... 17 2 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................GGGAATAGTAAAGGGGAAAGT....................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGAAAGTGAAAAGTCCGCTTG................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................GGGAATAGTAAAGAGGAAAGT....................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGTCGACGCAATAGCAAAGTG............................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGTAGACGAAATAGCAAAGTG............................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................GTCGGCTTATGGGTTGTAGTT.................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................ACCGTGAGTGCTACCCCAC..................................................................................................................................................................................................................... 19 3 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
....................CCGTGAGTGATACCCCCCC.................................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................GGAAAAAGGCAAGAGGAAAGT....................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTCGATGTCTAGGAAATA..................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................AGACGAAGCCATACCATCC.................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................ACCGTGAGTGCTACTCCCC..................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................GGAAATAGTAAAGACGAAAGT....................................................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTTGTTGTTATTGTTGTTGTTGTTG.............................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ACCGTGAGTGCTACCCCT...................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................TAGAGGCAATAGCAAAGTG............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................ACCGGGAGTGATACCCCC...................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12932:1848911-1849161 + dvi_9526 TACCCGTT----CTCTATAC----A----CGTGGCACTCACTATGAGGTCGGCTTCGATA--TGGTAAGCAA-------C------------------------------------AGCTCCTTTATCCTTTCACCTTTCAGCCGAACCCCCA------ACAACAACAACAAT------------AACAACA---ACAACAACAACAATAA------------------------------------------C---------------AGAC----------CG--------------T--TGCCAAATGTCACGCTAGCT--------------------------------TCATTAAATTTACCCAACGCACTT---------------------------------------GAGA--------A---------------------------------------------------------------------------AGTTAACTGAATTT----A-----TAAGTTT---------------A--GCTTTTCTTTTGA----------------------------------------------------------------------------------------------TCT-----------------------------------------------------------------------------------------------------------------------------------AAACTGA--------AAATTTAACTATTTT
droMoj3 scaffold_6308:2957640-2957816 - CTCTCGCC----CATCGTAA----TAAACAACGACG---------------------------------------------------------------------------------------------------------------------------ACAACAACAACAAC------------AACAACA---GCAACA---ACAATAA---------------------------------------TAGC---AA-------------C----------AG--------------C--AGCAAC----AACAACAGCCGTCA---TTCA----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAATAAATACATTTGGTATATG------CTCAAATAAATACATCA------AATATTGTGTTGTGATATCCAAATCTAA-------------------------------------------------------------------ATTTA--AATGTT
droGri2 scaffold_15203:4037552-4037825 + TACCAGTT----CTTTACAC----C----CGTGGCACTCACTACGAGGTCGGTTTCGATA--TGGTAAGTAT-------TCGTCCTTCGTCCTACGTCCTTC----------------GTCCTTTGTCCTTTGGCCTTTGAA--GTAACTCCA------AAA-CAC-GCTCGTCAAAGTCACGC-CAACCTA---ATTATA------AAAACCAA---------------------------------CCGCTTATT---G------------CGCCAA------TGCCAATAACTGAATTGTACGAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---------------------------------------------------------------------------------TAAATTTGGGTAAAAACTTTTGAACTTTGTTAAAAGC----------------------A----------ATTGAAAG------------------------------------------------------------GAAAAATGAATTAT-----------------------------------AAGGCTAGCCT
droWil2 scf2_1100000004590:4427126-4427349 + ATTTAGTA-----------------------------------------------------------AGCAT-------T-----------------------------------------------------------------------TAACTTTGCATAAAGCAACACC------------ACCAACA---ACAACA------ACAATAACTCAACTCCCACGCTTCTCAG------CAGCAGCAGCAGCTG----------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------GCCCTTTACTGCCCCCGTTGGCGTCGCTGCCGCCATCAACGCCACCGCAGCCGCCTCCGCATGACACTTAACGGTATTCATATGGAAACAGAGTTG---CCAATGT---------------------------------------------------------------------------------TGCTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCGA--------GCATTTAAG--CATT
dp5 XL_group1e:7449421-7449580 - CAGATGCA----CTTT------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACAAC------------AACAACA---AAAGGC------AAAGC------------------------------------AAAGAA---------------AAAC----------TA--------------------------------------TTA---G--TG---------------------------------------CACTCGGAGAAAAATGGCATATTAAAAATTAGATTTAAA-AATTAAGAGTGGTGTCAAATTAATAGAATTCATTTTTGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----AA--------AAACATAATTATTTT
droPer2 scaffold_2082:636-817 + CGACTCCG-------------------------------------------------GGA--AAGTAACCAACAGGCAAG-------------------CAAATCCCATATCCCCCAAATTCAAAA------------------CCATCTCCA------TCACCAACAATCAA------------ACCAGCA---ACAGCA------ACAAC------------------------------------ATCAGCGGAC-------------------------AA--------------TTACACAAAATG---------CCCCTGCCCC--TGCCCCTGCTCCAGCCAATGCTCCA----CTAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACCTGCAAA
droAna3 scaffold_13333:878549-878744 - CTCTACCT----AATTTTTTTCCAT-----------------------------------------------------------------------------------------------------------------------GCAAAACCAAA----ACAAAAA---------------------TAAAAGAAAAAAA------------------------------------------------AACCAA---------------AAAAATATAG------------------------------------------------------------------------------------------------------AAAAAATAAAATAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTACATTTCGAAGAGC----CTTCTAATTTTTGCCGCACGTTTTCACATTTTTTAATTTTATTTATATACTTTTTTTATTTTTTTAACTT-----------------------------------------------------------------------------------------------------------------------------------ATTCTTT--------ATTTTTAACATTTTT
droBip1 scf7180000395933:148652-148812 - CAACAAA-------------------------------------------------------------------------------------------------------------------------------------------AACAC---------CAACAACAACACTA---------GCAACAACA---ACAACAATAACAACAAC----------------------------------------------------------------------------------------------------------AACCATCG---CGTC----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCATAGTCACGTC--------------------------------------AATTTTGTTTGTTGTTGGCCAAAGCTGAGGCTGAGTCTGAGGCCGAGGCTGACTCCGCGTCT---------------------AAAGCTGTGG----CAA--AAGATT
droKik1 scf7180000302517:776922-777048 + ACCA------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAACAACAAA------------AACAACCACAACAGCA------ACAAC------------------------------------AGAGAT---------------------GGATGAGAAATT--------------GTAAAAAA-----------------------------------------------------TTT-----A--CACTT---------------------------------------TAGG--------A---------------------------------------------------------------------------AAATCTCTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAGCTTTCGGTGTTTTTAAACCAAAATAA--------A----------AACT
droFic1 scf7180000454073:2567188-2567379 + ACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACAACAAG------------AACAACA---ATGGCA------ACAAC------------------------------------AACGGC---AAAGCGGGCTGTAAAA-----------------------------------ATA----TG-----------------C----------------------------------------------CACAAATTGATTGAT-----------TTGCCA----CGGC-------------------------------------------------------------------------------AC------GAAGCTG----AGATCCAAAGA-----C-----------------------------------------------------------------------------GTTTGGCCACGT--TG----------------------------------------CAAACTCGTTTCAGTTTCAATTTCATTTTTAAAGGCA-----TTTTCC------------------------------------------------CCCGCGTTTTTTCC-----------------------------------TCCCCCATCTT
droEle1 scf7180000491193:278170-278291 + CTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACAAA------------AACTACA---ACAACA------ACAAC------------------------------------ATTGCC---TAA-----------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------GGGCAAGGTCTTTTCTGATCGTAATAAAGTTATTGCCCTCTTCTACTCTCCTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------GGAATTTTAT----CTG--GCTCTT
droRho1 scf7180000769112:28917-29040 + CCA------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACAGCGA---------------CTTAAGCAACAAC------------------------------------------------AATAGCAAG---G------------CGACAG------TGCC--------------AGCAAAT--------------TG---TGTC----------------------------T--------------------------------------------------------------------------------------------------------------------------------------TGTCATGTAA--AAAAGGTTTTTT-------------------------------------------------------TATAGT-------GCAGAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTTTTTGTAT-----------------------------------AGATTTTGCTT
droBia1 scf7180000302422:423794-423921 - TTTGCCCTTCCGCGTTTTATTAGCT-----------------------------------------------------------------------------------------------------------------------GCAGCTCCA------GCAACAACAATGTGA---------GGCACGCCG---ACAACA---------GC------------------------------AACAACAACACT---------GGTCACAGGC----------GG--------------C--AGCGAC----AGCGCCATCT--------------------------AGCGCTTGA----CTTTGTCCAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415868:401543-401726 + CTCTCAAC----TCTCAAGCGGA----------------------------------------------------------------------------------------------------------------------------AATGGCAGACCAGAGACAACAACAAG------------AATAGCA---ATAATA------ATAACAAG---------------------------------TA---C---------------ATCT----------AG--------------C--AATGGC----AATGGCAGCTCCCG---ACCAGCTTCAGATTCAGTTG---------------------ACACACTG---------------------------------------GGGG--------A---------------------------------------------------------------------------A--AAACTGGGGGC----C-----TAAATTA---GATTGGC---------------------------------------------------------------------------------TTTCATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA--------GACTTTTAT--TACT
droEug1 scf7180000409533:603406-603550 + AACCGTA--------------------------------------------------------------------------------------------------------------------------------------------AACCGAAAACCGAAAACAGAAAACCG------------AAAAACA---ATAACA------ATAACAAA---------------------------------CA--GC---A-----AATAACAAA------TAACAAATAAC--------------AGTAAATG---------AACTT-----------------------GACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTTCCCCAAATGTAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTTATTCAC-----------------------------------TTACTTGTTTT
dm3 chr2L:20689431-20689572 - TAACTTCT----CCACGCAA----ACCGCCTCGACGACCACCACGACGTCGGCATCGGCAGCTGGACACCAC-------C------------------------------------AACACCATAACCACCTCCTCCATCAGCAGCATCAC---------AACCAGCAGCAGCA---------GCAGCAGCA---GCAACAGCAACAACAAC----------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:4636279-4636415 + ACA------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAATAATGGT------------AACAGAA---GCAACA---------GC------------------------------------AACAACGGCCAA---------------ACATAAACAACAAC-----------------------------AG--------------------------TAA---------------------A--CACTC---------------------------------------GAAG--------A---------------------------------------------------------------------------AAACAACGTAAATA----T-----CAAGTTT---------------TACGCTCTCCCAATTA----------------------------------------------------------------------------------------------CGT-----------------------------------------------------------------------------------------------------------------------------------TACGTTA--------AGATCATATTTTTTT
droSec2 scaffold_40:58926-59088 + CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATAACAAT------------AACAATA---ACAACAACAATAATAA------------------------------------------C---AA-------------C----------TT--------------------------------------TTT---T--TC---------------------------------------CACGCCCA--------------------------------------------------------------------------CTCTAACGCCCA--CCG--A-------------------------GC------AAAACTG----CCACGTCCATA-----C-----------------------------------------------------------------------------TTTTGAACA-------------------A----------------------GTTTTTAAATTTTTTTTAATTTTA------TTCACCAATAT------------------------------------------------------------------------------------------ACCAGAA--------AAATTATGAAATTTT
droYak3 X:8074639-8074774 + TTTGTTCTTGCGTTTTCTTCTGGCT-----------------------------------------------------------------------------------------------------------------------TGACCACCA-----TCAGAGAAATACAAC------------AACAACA---ACAACA------ACAAC------------------------------------AATTGA---------------ACAC----------TG--------------C--GGCGAAATA----TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATT----------------ATTATGTTTGCATATCGCCGACT----TG-------------------------------------------------------------------------------------------------------------------------------------------------CTGG-------------------------------------------------------------------GTTT---CATTTT
droEre2 scaffold_4784:18413974-18414097 - CAGGAGA-------------------------------------------------------------------------------------------------------------------------------------------GGCAC---------GAGCAGCAGCAGCA---------GCAGCAGCA---GCAACAGCAGGCGCAGC--A-------------------GCAACTGCCGCAGCAACACC----------------------------------------------------------------AA---------------------------------------------------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGCAACTGCAGA-------GCTCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTTTTTGCAG-----------------------------------TCGGTCTTTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TACCCGTT----CTCTATAC----A----CGTGGCACTCACTATGAGGTCGGCTTCGATA--TGGTAAGCAA-------C------------------------------------AGCTCCTTTATCCTTTCACCTTTCAGCCGAACCCCCA------ACAACAACAACAAT------------AACAACA---ACAACAACAACAATAA------------------------------------------C---------------AGAC----------CG--------------T--TGCCAAATGTCACGCTAGCT--------------------------------TCATTAAATTTACCCAACGCACTT---------------------------------------GAGA--------A---------------------------------------------------------------------------AGTTAACTGAATTT----A-----TAAGTTT---------------A--GCTTTTCTTTTGA----------------------------------------------------------------------------------------------TCT-----------------------------------------------------------------------------------------------------------------------------------AAACTGA--------AAATTTAACTATTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................CAAT------------AACAACA---ACAACAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................AACAACAAT------------AACAACA---ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
CTCTCGCC----CATCGTAA----TAAACAACGACG---------------------------------------------------------------------------------------------------------------------------ACAACAACAACAAC------------AACAACA---GCAACA---ACAATAA---------------------------------------TAGC---AA-------------C----------AG--------------C--AGCAAC----AACAACAGCCGTCA---TTCA----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAATAAATACATTTGGTATATG------CTCAAATAAATACATCA------AATATTGTGTTGTGATATCCAAATCTAA-------------------------------------------------------------------ATTTA--AATGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................AAC----AACAACAGCCGTCA---TTCA----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAT...........................................................................................................................................................2811.001000001
...........................................................................................................................................................................................................................................................................................AG--------------C--AGCAAC----AACAACAGCCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
..........................................................................................................................................................................................................................................................TAGC---AA-------------C----------AG--------------C--AGCAAC----AACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051010000
...........................................................................................................................................................................................................................................................AGC---AA-------------C----------AG--------------C--AGCAAC----AACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
droGri2
TACCAGTT----CTTTACAC----C----CGTGGCACTCACTACGAGGTCGGTTTCGATA--TGGTAAGTAT-------TCGTCCTTCGTCCTACGTCCTTC----------------GTCCTTTGTCCTTTGGCCTTTGAA--GTAACTCCA------AAA-CAC-GCTCGTCAAAGTCACGC-CAACCTA---ATTATA------AAAACCAA---------------------------------CCGCTTATT---G------------CGCCAA------TGCCAATAACTGAATTGTACGAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---------------------------------------------------------------------------------TAAATTTGGGTAAAAACTTTTGAACTTTGTTAAAAGC----------------------A----------ATTGAAAG------------------------------------------------------------GAAAAATGAATTAT-----------------------------------AAGGCTAGCCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................GGCACTCACTACGAGGTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
droWil2
ATTTAGTA-----------------------------------------------------------AGCAT-------T-----------------------------------------------------------------------TAACTTTGCATAAAGCAACACC------------ACCAACA---ACAACA------ACAATAACTCAACTCCCACGCTTCTCAG------CAGCAGCAGCAGCTG----------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------GCCCTTTACTGCCCCCGTTGGCGTCGCTGCCGCCATCAACGCCACCGCAGCCGCCTCCGCATGACACTTAACGGTATTCATATGGAAACAGAGTTG---CCAATGT---------------------------------------------------------------------------------TGCTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCGA--------GCATTTAAG--CATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................ACCAACA---ACAACA------ACAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
dp5
CAGATGCA----CTTT------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACAAC------------AACAACA---AAAGGC------AAAGC------------------------------------AAAGAA---------------AAAC----------TA--------------------------------------TTA---G--TG---------------------------------------CACTCGGAGAAAAATGGCATATTAAAAATTAGATTTAAA-AATTAAGAGTGGTGTCAAATTAATAGAATTCATTTTTGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----AA--------AAACATAATTATTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGACTCCG-------------------------------------------------GGA--AAGTAACCAACAGGCAAG-------------------CAAATCCCATATCCCCCAAATTCAAAA------------------CCATCTCCA------TCACCAACAATCAA------------ACCAGCA---ACAGCA------ACAAC------------------------------------ATCAGCGGAC-------------------------AA--------------TTACACAAAATG---------CCCCTGCCCC--TGCCCCTGCTCCAGCCAATGCTCCA----CTAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACCTGCAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......CG-------------------------------------------------GGA--AAGTAACCAACAGGCAAG-------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.50301290000
.........................................................................................................................................................................................ACCAGCA---ACAGCA------ACAAC------------------------------------ATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.459090000
.........................................................................................................................................................................................ACCAGCA---ACAGCA------ACAAC------------------------------------ATCAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.408080000
.GACTCCG-------------------------------------------------GGA--AAGTAACCAACAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.357060001
.........................................................................................................................................................................................................................................................TCAGCGGAC-------------------------AA--------------TTACACAAAATG---------CCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.306150000
.........................................................................................................................................................................................ACCAGCA---ACAGCA------ACAAC------------------------------------ATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.255050000
.......................................................................................................TCCCATATCCCCCAAATTCAAAA------------------CCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.204040000
..........................................................................................................................................................................................CCAGCA---ACAGCA------ACAAC------------------------------------ATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153030000
......CG-------------------------------------------------GGA--AAGTAACCAACAGGCAAG-------------------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153030000
.........................................................................................................................................................................................ACCAGCA---ACAGCA------ACAAC------------------------------------ATCAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
....................................................................................................................................................................................................................................................................................................................................................................A----CTAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACCTGCA..25200.102020000
................................................................................................................................................................CACCAACAATCAA------------ACCAGCA---ACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
.................................................................TAACCAACAGGCAAG-------------------CAAATCCCATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
.GACTCCG-------------------------------------------------GGA--AAGTAACCAACAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
.GACTCCG-------------------------------------------------GGA--AAGTAACCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
..................................................................................................................................................................................................................................................................................................................................................TGCTCCAGCCAATGCTCCA----CTAGCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102010100
....................................................................................................................................................................................................................................................................................................................................................................A----CTAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACCT.....22200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................TAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACCTGC...22200.051010000
.....................................................................................................................AATTCAAAA------------------CCATCTCCA------TCACCAACAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051010000
...............................................................................................................................................................TCACCAACAATCAA------------ACCAGCA---ACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.....................................................................................................AATCCCATATCCCCCAAATTCAAAA------------------CCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
......CG-------------------------------------------------GGA--AAGTAACCAACAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................................................................CA----CTAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACC......22200.051010000
.........................................................................................................................................................................................................................................................TCAGCGGAC-------------------------AA--------------TTACACAAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.................................................................................................................................................................................................................AAC------------------------------------ATCAGCGGAC-------------------------AA--------------TTACACAAAATG---------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.........................................................................................................................................................................................................................................................TCAGCGGAC-------------------------AA--------------TTACACAAAATG---------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
................................................................................................................................................CCATCTCCA------TCACCAACAATCAA------------ACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
..........................................................................................................................................................................CAA------------ACCAGCA---ACAGCA------ACAAC------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...................................................................................................................................................................................................ACAGCA------ACAAC------------------------------------ATCAGCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.................................................................................................................................................................................................................................................................................................................................................................TCCA----CTAGCTCTACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------TCACCTGC...27200.051010000
.GACTCCG-------------------------------------------------GGA--AAGTAACCAACAGGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
......CG-------------------------------------------------GGA--AAGTAACCAACAGGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
......CG-------------------------------------------------GGA--AAGTAACCAACAGGCAAG-------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...............................................................................................................................................................TCACCAACAATCAA------------ACCAGCA---AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
............................................................................................................................................................................................................................................................................................................TACACAAAATG---------CCCCTGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
........................................................................................................................TCAAAA------------------CCATCTCCA------TCACCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.........................................................................................................................CAAAA------------------CCATCTCCA------TCACCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.......G-------------------------------------------------GGA--AAGTAACCAACAGGCAAG-------------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.GACTCCG-------------------------------------------------GGA--AAGTAACCAACAGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
............................................................................................................................................................................................................................................................................................................TACACAAAATG---------CCCCTGCCCC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..........................................................................................................................................................................................................................................................CAGCGGAC-------------------------AA--------------TTACACAAAATG---------CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...........................................................................................................................................................................................................................................................................................................TTACACAAAATG---------CCCCTGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droAna3
CTCTACCT----AATTTTTTTCCAT-----------------------------------------------------------------------------------------------------------------------GCAAAACCAAA----ACAAAAA---------------------TAAAAGAAAAAAA------------------------------------------------AACCAA---------------AAAAATATAG------------------------------------------------------------------------------------------------------AAAAAATAAAATAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTACATTTCGAAGAGC----CTTCTAATTTTTGCCGCACGTTTTCACATTTTTTAATTTTATTTATATACTTTTTTTATTTTTTTAACTT-----------------------------------------------------------------------------------------------------------------------------------ATTCTTT--------ATTTTTAACATTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................TAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTACATTTCGAAGAGC----C......................................................................................................................................................................................................................................2620.501010000
........................................................................................................................................................AAA----ACAAAAA---------------------TAAAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171010000
.............................................................................................................................................................................................AAAGAAAAAAA------------------------------------------------AACCAA---------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.141010000
droBip1
CAACAAA-------------------------------------------------------------------------------------------------------------------------------------------AACAC---------CAACAACAACACTA---------GCAACAACA---ACAACAATAACAACAAC----------------------------------------------------------------------------------------------------------AACCATCG---CGTC----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCATAGTCACGTC--------------------------------------AATTTTGTTTGTTGTTGGCCAAAGCTGAGGCTGAGTCTGAGGCCGAGGCTGACTCCGCGTCT---------------------AAAGCTGTGG----CAA--AAGATTSizeHit CountTotal NormTotal
No Reads
droKik1
ACCA------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAACAACAAA------------AACAACCACAACAGCA------ACAAC------------------------------------AGAGAT---------------------GGATGAGAAATT--------------GTAAAAAA-----------------------------------------------------TTT-----A--CACTT---------------------------------------TAGG--------A---------------------------------------------------------------------------AAATCTCTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAGCTTTCGGTGTTTTTAAACCAAAATAA--------A----------AACTSizeHit CountTotal NormTotal
No Reads
droFic1
ACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACAACAAG------------AACAACA---ATGGCA------ACAAC------------------------------------AACGGC---AAAGCGGGCTGTAAAA-----------------------------------ATA----TG-----------------C----------------------------------------------CACAAATTGATTGAT-----------TTGCCA----CGGC-------------------------------------------------------------------------------AC------GAAGCTG----AGATCCAAAGA-----C-----------------------------------------------------------------------------GTTTGGCCACGT--TG----------------------------------------CAAACTCGTTTCAGTTTCAATTTCATTTTTAAAGGCA-----TTTTCC------------------------------------------------CCCGCGTTTTTTCC-----------------------------------TCCCCCATCTTSizeHit CountTotal NormTotal
No Reads
droEle1
CTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACAAA------------AACTACA---ACAACA------ACAAC------------------------------------ATTGCC---TAA-----------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------GGGCAAGGTCTTTTCTGATCGTAATAAAGTTATTGCCCTCTTCTACTCTCCTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------GGAATTTTAT----CTG--GCTCTTSizeHit CountTotal NormTotal
No Reads
droRho1
CCA------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACAGCGA---------------CTTAAGCAACAAC------------------------------------------------AATAGCAAG---G------------CGACAG------TGCC--------------AGCAAAT--------------TG---TGTC----------------------------T--------------------------------------------------------------------------------------------------------------------------------------TGTCATGTAA--AAAAGGTTTTTT-------------------------------------------------------TATAGT-------GCAGAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTTTTTGTAT-----------------------------------AGATTTTGCTTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTGCCCTTCCGCGTTTTATTAGCT-----------------------------------------------------------------------------------------------------------------------GCAGCTCCA------GCAACAACAATGTGA---------GGCACGCCG---ACAACA---------GC------------------------------AACAACAACACT---------GGTCACAGGC----------GG--------------C--AGCGAC----AGCGCCATCT--------------------------AGCGCTTGA----CTTTGTCCAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTCTCAAC----TCTCAAGCGGA----------------------------------------------------------------------------------------------------------------------------AATGGCAGACCAGAGACAACAACAAG------------AATAGCA---ATAATA------ATAACAAG---------------------------------TA---C---------------ATCT----------AG--------------C--AATGGC----AATGGCAGCTCCCG---ACCAGCTTCAGATTCAGTTG---------------------ACACACTG---------------------------------------GGGG--------A---------------------------------------------------------------------------A--AAACTGGGGGC----C-----TAAATTA---GATTGGC---------------------------------------------------------------------------------TTTCATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA--------GACTTTTAT--TACTSizeHit CountTotal NormTotal
No Reads
droEug1
AACCGTA--------------------------------------------------------------------------------------------------------------------------------------------AACCGAAAACCGAAAACAGAAAACCG------------AAAAACA---ATAACA------ATAACAAA---------------------------------CA--GC---A-----AATAACAAA------TAACAAATAAC--------------AGTAAATG---------AACTT-----------------------GACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTTCCCCAAATGTAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTTATTCAC-----------------------------------TTACTTGTTTTSizeHit CountTotal NormTotal
No Reads
dm3
TAACTTCT----CCACGCAA----ACCGCCTCGACGACCACCACGACGTCGGCATCGGCAGCTGGACACCAC-------C------------------------------------AACACCATAACCACCTCCTCCATCAGCAGCATCAC---------AACCAGCAGCAGCA---------GCAGCAGCA---GCAACAGCAACAACAAC----------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................CATCAC---------AACCAGCAGCAGCA---------GCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCAC---------AACCAGCAGCAGCA---------GCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACCTCCTCCATCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCATCAC---------AACCAGCAGCAGCA---------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCAC---------AACCAGCAGCAGCA---------GCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CATCAC---------AACCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CAC---------AACCAGCAGCAGCA---------GCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCA---GCAACAGCAACAACAAC----------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................C---------AACCAGCAGCAGCA---------GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CAGCAGCA---------GCAGCAGCA---GCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GCAGCAGCA---GCAACAGCAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A---------GCAGCAGCA---GCAACAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CA---------GCAGCAGCA---GCAACAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AGCAGCAGCA---------GCAGCAGCA---GCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ACCAGCAGCAGCA---------GCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................GCAGCAGCA---GCAACAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CAGCAGCAGCA---------GCAGCAGCA---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................AGCAGCA---GCAACAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CA---------GCAGCAGCA---GCAACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................GCA---GCAACAGCAACAACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GCA---------GCAGCAGCA---GCAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CAGCAGCA---------GCAGCAGCA---GCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CAGCAGCA---GCAACAGCAACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AACCAGCAGCAGCA---------GCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCA---GCAACAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACA------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAATAATGGT------------AACAGAA---GCAACA---------GC------------------------------------AACAACGGCCAA---------------ACATAAACAACAAC-----------------------------AG--------------------------TAA---------------------A--CACTC---------------------------------------GAAG--------A---------------------------------------------------------------------------AAACAACGTAAATA----T-----CAAGTTT---------------TACGCTCTCCCAATTA----------------------------------------------------------------------------------------------CGT-----------------------------------------------------------------------------------------------------------------------------------TACGTTA--------AGATCATATTTTTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................AACAGAA---GCAACA---------GC------------------------------------AACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000100000000000
.........................................................................................................................................................................................AACAGAA---GCAACA---------GC------------------------------------AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.29500000000005000000
.........................................................................................................................................................................................AACAGAA---GCAACA---------GC------------------------------------AAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.24400000000004000000
.........................................................................................................................................................................................AACAGAA---GCAACA---------GC------------------------------------AA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17170.18300000000003000000
.........................................................................................................................................................................................AACAGAA---GCAACA---------GC------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.15300000000003000000
.........................................................................................................................................................................................AACAGAA---GCAACA---------GC------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.11200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................AA---------------------A--CACTC---------------------------------------GAAG--------A---------------------------------------------------------------------------AAA.............................................................................................................................................................................................................................................................................................................................16150.07100000001000000000
.............................................................................................................................................................................................GAA---GCAACA---------GC------------------------------------AACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATAACAAT------------AACAATA---ACAACAACAATAATAA------------------------------------------C---AA-------------C----------TT--------------------------------------TTT---T--TC---------------------------------------CACGCCCA--------------------------------------------------------------------------CTCTAACGCCCA--CCG--A-------------------------GC------AAAACTG----CCACGTCCATA-----C-----------------------------------------------------------------------------TTTTGAACA-------------------A----------------------GTTTTTAAATTTTTTTTAATTTTA------TTCACCAATAT------------------------------------------------------------------------------------------ACCAGAA--------AAATTATGAAATTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTGTTCTTGCGTTTTCTTCTGGCT-----------------------------------------------------------------------------------------------------------------------TGACCACCA-----TCAGAGAAATACAAC------------AACAACA---ACAACA------ACAAC------------------------------------AATTGA---------------ACAC----------TG--------------C--GGCGAAATA----TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATT----------------ATTATGTTTGCATATCGCCGACT----TG-------------------------------------------------------------------------------------------------------------------------------------------------CTGG-------------------------------------------------------------------GTTT---CATTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAGGAGA-------------------------------------------------------------------------------------------------------------------------------------------GGCAC---------GAGCAGCAGCAGCA---------GCAGCAGCA---GCAACAGCAGGCGCAGC--A-------------------GCAACTGCCGCAGCAACACC----------------------------------------------------------------AA---------------------------------------------------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGCAACTGCAGA-------GCTCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTTTTTGCAG-----------------------------------TCGGTCTTTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................CA---GCAACAGCAGGCGCAGC--A-------------------GCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000010
.........................................................................................................................................................................................AGCAGCA---GCAACAGCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.0610100000

Generated: 05/17/2015 at 05:07 AM