ID:

dvi_95

Coordinate:

scaffold_12758:855593-855655 -

Confidence:

Known Ortholog

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in alignment

mismatch in read

Predicted structure

-34.6	-34.6	-34.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAAAAAATTAAAGACAGGTATGTATGGATCTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTTTGAGTTTTTCCTAGTGGCATTCAACCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAAACTAATACGGGTTGGGGCAAGCCAAA *********************************((((((.((((.(((.(((((.((.(((((.(((((((..((......))...)))))))))))).)).))))).))).)))).))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V047 embryo	M061 embryo	SRR1106730 embryo_16-30h	SRR060678 9x140_testes_total	SRR060672 9x160_females_carcasses_total	SRR060681 Argx9_testes_total	SRR060664 9_males_carcasses_total	SRR060667 160_females_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060671 9x160_males_carcasses_total	V053 head	V116 male body	SRR060680 9xArg_testes_total	SRR060679 140x9_testes_total	M047 female body	SRR060654 160x9_ovaries_total	SRR060665 9_females_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060670 9_testes_total	SRR060689 160x9_testes_total	SRR060655 9x160_testes_total	SRR060656 9x160_ovaries_total	SRR060666 160_males_carcasses_total	SRR060673 9_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060688 160_ovaries_total	SRR060659 Argentina_testes_total	SRR060683 160_testes_total	M027 male body	SRR060687 9_0-2h_embryos_total	SRR060658 140_ovaries_total	SRR060674 9x140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR1106715 embryo_4-6h
..................................................CATCGTGCACAGGTTTGAGTGT...........................................................................................	22	0	1	108.00	108	13	3	1	15	10	8	4	2	2	1	5	5	5	1	1	2	1	1	4	3	3	2	3	2	2	3	1	2	0	0	1	1	1	0
..................................................CATCGTGCACAGGTTTGAGTGTT..........................................................................................	23	0	1	88.00	88	44	13	13	2	2	1	1	3	2	0	0	1	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTT.........................................................................................	24	0	1	17.00	17	0	1	0	1	2	0	2	3	2	2	0	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CATTCAACCTTTGAACGGTAGA...................................................	22	0	1	16.00	16	1	6	4	0	0	1	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTG............................................................................................	21	0	1	6.00	6	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGT.............................................................................................	20	0	1	5.00	5	0	0	0	1	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CATTCAACCTTTGAACGG.......................................................	18	0	1	4.00	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................CATCGTGCACAGGTTTGAG..............................................................................................	19	0	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
..................................................CGTCGTGCACAGGTTTGAGTGTT..........................................................................................	23	1	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTC..........................................................................................	23	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACGGGTTTGAGTGT...........................................................................................	22	1	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................CCATCGTGCACAGGTTTGAGTGT...........................................................................................	23	0	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTTAGTGT...........................................................................................	22	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTC.........................................................................................	24	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGAGTTTTTCCTAGTGGCATTCAACCTTTGAACGGTAGA...................................................	39	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTCAACCTTTGAACGGTAGAG..................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTATT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGCCGTGCACAGGTTTGAGTGT...........................................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ATCGTGCAGAGGTTTGAGTGTC..........................................................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGA...............................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTAA........................................................................................	25	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CATTCAACCTCTGAACGGTAGA...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTAT........................................................................................	25	2	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CACCGTGCACAGGTTTGAGTGTT..........................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGAGTT..........................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGGGCTCAGGTTTGAGTGT...........................................................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACATGTTTGAGTGTTT.........................................................................................	24	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTCAACCTTTGAACGGTAGAGA.................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATGGTGCACAGGTTTGAGTGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGATTGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTCT........................................................................................	25	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACCGGTTTGAGTGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTGCACAGGTTTGAGTGT...........................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCCCAGGTTTGAGTGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTTTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTTAGTGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATTGTGCACAGGTTTGAGTGTC..........................................................................................	23	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TCTCATCAGTTAGCTAGCTC.................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTCAACCTTTGAACGGTAGA...................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGA...........................................................................................	22	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TATCGTGCACAGGTTTGAGTGT...........................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TAAGTTTTTCCTAGTGGCATTCAACCTTTGAACGGTAGA...................................................	39	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATTGTGCACAGGTTTGAGTGTT..........................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CATCCAACCTTTGAACGGTAGA...................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTA.........................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGCGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTCAACCTTTGAACGGTAGCGA.................................................	22	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ATTCAACCTTTGAACGGTAGA...................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTCTGAGTGTT..........................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGGGCACAGGTTTGAGGGTT..........................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CAGCGTGCACAGGTTTTAGTGT...........................................................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGAACAGGTTTGAGTGTTT.........................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CATTCAACCTTTGAACGGTAG....................................................	21	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCGTGCACAGGTTTGAGTGTTTT........................................................................................	25	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTGCAGAGGTTTGAGTGTCT.........................................................................................	20	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................CATCGTGCACAGTTTTCAGTTTT..........................................................................................	23	3	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CGGCCCAAACTACTACGGG...............	19	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CATCTTGCACCGGTTTTAGTGT...........................................................................................	22	3	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TGAGTGTTGGAGGGTTTCC...............................................................................	19	3	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AGGTACAACGTGCACAGGT...................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................TAAATATGGATCTATCATCA.............................................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Anti-sense strand reads

TTTGGCTTGCCCCAACCCGTATTAGTTTAGGTCGCTTTTCAGTTGGCCATCTCTACCGTTCAAAGGTTGAATGCCACTAGGAAAAACTCAAACACTCAAACCTGTGCACGATGGAGCTAGCTAACTGATGAGAGATCCATACATACCTGTCTTTAATTTTTTA **********************************..((((((.((((.(((.(((((.((.((((((((((((...((......))..))))))).))))).)).))))).))).)))).))))))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060665 9_females_carcasses_total	SRR060666 160_males_carcasses_total	SRR060669 160x9_females_carcasses_total	V116 male body	SRR060672 9x160_females_carcasses_total
...............................TCGCATTTCACTGGGCCATC................................................................................................................	20	3	12	0.25	3	0	0	1	1	1	0
.........CCCCAACCCGTTTTAGTTAC......................................................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0
...............................TCGCTTTTCACTGGGCCAGC................................................................................................................	20	3	20	0.15	3	0	2	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_12758:855543-855705 -	dvi_95	TAAAAA----------ATT-AAA-G-A-----------CAG-GT----AT---GTATGG------------------------------------------AT-----CTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA-T-ACGGGTTG-GGG--CAA----GCCAAA
droMoj3	scaffold_6680:1909590-1909779 -	dmo_71	TAAAAA-----------ACATAA-C-ACAGGTATGTATCGA-TT----CT--TATTTGA----CTCGAATCTC-----------------AGGTA--TC--CA----ATAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA-A-GCGAATCA-AGG--GAACTAGGCC--A
droGri2	scaffold_15110:657018-657193 +	dgr_27	TGAAAA----------ATT-AAA-G-A-----------CAG-GT----TT---GTTTTT----CTTGTAGATGAAATGGATTTA---ATA------------------------AAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAACAATCACA-------GTTAAAA----GTTAAA
droWil2	scf2_1100000004511:10215699-10215851 +	dwi_58	AAATAAATTTTCAAAAAACATAA-T-ATTAT-------TCA-AA-T--ACTT-TTGCGTTA------------------------------------------------------AGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAA----------------------------------
droAna3	scaffold_13337:7606398-7606542 +	dan_53	TAGTGT-----------------------------------------------TTTTAATTTTCCTGAGGGTG-----------------AAGGA--TG--TT-----TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTT-TAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATAC---------------------------------
droBip1	scf7180000395543:273549-273684 +		TAAT--------------------------------------------------TGTGTTGAA------GGTGAAG----------------G-C--TG-----TT-TTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCT-AT---TTTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAA----------------------------------
droKik1	scf7180000302391:414295-414469 +		TAAAAA-----------TC-TAAAA-C-----------CCAAAC-TAGTT---GTTTGCTTTG------TGTA-GCTAAAATTG---------AATTCG--AC-----ATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTA-T-ATG------------------------
droFic1	scf7180000454105:1620264-1620431 +		TTAAAA----------ATC-AAATT-C-----------TAA-AG-T--AT---TTTTGCT-TG------AGTG-GGTGAAGCA--------------AC--CT-----TTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATA-T-AC-------------------------
droEle1	scf7180000491249:1960500-1960669 -		TAAAAA----------ATC-AAATCGT-----------TAA-AT----TT---GTTTGACTTA------GGTG-GGTAAAATTATTGTG-GAAGG--TA--TT-----TGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAA-----------------------------------
droRho1	scf7180000769770:13945-14114 -		TAAAAA-----------AC-ATTTTGT-----------TGA-AA----TT---ATTTGACTTA------GGTG-GGTAAAATTAT--AATATGAA--GA--CT-----TTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAAC---------------------------------
droBia1	scf7180000302428:2658351-2658532 +		TAAAAA-----------TC-AAAAG-T-----------TTT-AT----AT---TTTTGCCTAA------GGTG-GGTAGAATAATAATTACAGGA--TTTGCTTTT-CGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT-T---------------------------A
droTak1	scf7180000415378:64802-64981 -		TAAAAA-----------TG-AAATG-T-----------TGA-TATG--ATCT-TTGCGTT-AA------GGTG-GGTAGAATAA---TTACAGGG--TA--TTTTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA-T----------------------------
droEug1	scf7180000409466:1024663-1024822 +		TAAAAAA---------ATT-AAATA-C-----------CTA-AA----TT---TTTTGGG---ATTGTAGTTGGGATA-------------------TT-----TT-ATTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAA----------------------------------
dm3	chr3L:3298993-3299165 +	dme-mir-955	TAAAAA-----------TT-AAATA-A-----------CAA-AA----TT---GTTTGATGTA------GGTGGGGTAAAATAG---GTAAGGAA--CA--CT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA-T----------------------------
droSim3	3L:2834514-2834686 +		TAAAAA-----------TT-AAATA-A-----------TAA-AA----TT---GTTTGATGTA------GGTGGGGTAAAATAG---GTAAAGAA--CT--CT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA-T----------------------------
droSec2	scaffold_2:3291296-3291465 +		TAAAAA-----------TT-AAATA-A-----------TAA-AA----TT---GTTTGATGTA------GGTGGGGTAAAATAG---GTAATAAA--CA--CT-----TTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAAAA-T----------------------------
droYak3	3L:3844701-3844862 +	dya_46	TAAAAA-----------TT-AAATA-T-----------TAC-AG----TT---GTTTGCTATA------GGCG-GGTAAAATAA---GTAAAG------------------TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATGA------------------------------
droEre2	scaffold_4784:5981944-5982137 +	der_54	TAAAAA-----------TG-AAATA-A-----------TAC-AT----TT---GTGTGCTATA------ATTG-GGTAAAATAA---G-AAGGAATACA--C------TTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA-GTATTAATTATGGT--CAA----ATAATA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TAAAAA----------ATT-AAA-G-A-----------CAG-GT----AT---GTATGG------------------------------------------AT-----CTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA-T-ACGGGTTG-GGG--CAA----GCCAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body
.................................................................................................................................CATCGTGCACAGGTTTGAGTGT..........................................................................................................	22	1	108.00	108	0	0	1	3	2	3	2	0	1	1	0	0	0	0	4	1	3	2	2	1	4	1	10	2	1	0	1	2	15	1	5	8	0	2	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	13	5	5
.................................................................................................................................CATCGTGCACAGGTTTGAGTGTT-........................................................................................................	23	1	88.00	88	1	0	1	13	1	0	1	0	0	0	0	0	0	0	1	0	0	3	2	0	0	0	2	0	0	0	0	0	2	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	44	0	1
.................................................................................................................................CATCGTGCACAGGTTTGAGTGTT-T.......................................................................................................	24	1	17.00	17	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	1	0	3	2	1	0	2	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................CATTCAACCTTTGAACGGTAGA.............................................................	22	1	16.00	16	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0
.................................................................................................................................CATCGTGCACAGGTTTGAGTG...........................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................CATCGTGCACAGGTTTGAGT............................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CATTCAACCTTTGAACGG.................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.................................................................................................................................CATCGTGCACAGGTTTGAG.............................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CCATCGTGCACAGGTTTGAGTGT..........................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA.............................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................TTCAACCTTTGAACGGTAGAG............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CATCGTGCACAGGTTTGA..............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................TTCAACCTTTGAACGGTAGAGA...........................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GTGCACAGGTTTGAGTGT..........................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TCTCATCAGTTAGCTAGCTC................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTCAACCTTTGAACGGTAGA.............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ATTCAACCTTTGAACGGTAGA.............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CATTCAACCTTTGAACGGTAG..............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TAAAAA-----------ACATAA-C-ACAGGTATGTATCGA-TT----CT--TATTTGA----CTCGAATCTC-----------------AGGTA--TC--CA----ATAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA-A-GCGAATCA-AGG--GAACTAGGCC--A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	V060 Head	V110 Male-body
No Reads

droGri2

TGAAAA----------ATT-AAA-G-A-----------CAG-GT----TT---GTTTTT----CTTGTAGATGAAATGGATTTA---ATA------------------------AAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAACAATCACA-------GTTAAAA----GTTAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAATAAATTTTCAAAAAACATAA-T-ATTAT-------TCA-AA-T--ACTT-TTGCGTTA------------------------------------------------------AGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAA----------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droAna3

TAGTGT-----------------------------------------------TTTTAATTTTCCTGAGGGTG-----------------AAGGA--TG--TT-----TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTT-TAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATAC---------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TAAT--------------------------------------------------TGTGTTGAA------GGTGAAG----------------G-C--TG-----TT-TTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCT-AT---TTTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAA----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAAAAA-----------TC-TAAAA-C-----------CCAAAC-TAGTT---GTTTGCTTTG------TGTA-GCTAAAATTG---------AATTCG--AC-----ATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTA-T-ATG------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTAAAA----------ATC-AAATT-C-----------TAA-AG-T--AT---TTTTGCT-TG------AGTG-GGTGAAGCA--------------AC--CT-----TTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATA-T-AC-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAAAAA----------ATC-AAATCGT-----------TAA-AT----TT---GTTTGACTTA------GGTG-GGTAAAATTATTGTG-GAAGG--TA--TT-----TGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAA-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAAAAA-----------AC-ATTTTGT-----------TGA-AA----TT---ATTTGACTTA------GGTG-GGTAAAATTAT--AATATGAA--GA--CT-----TTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAAC---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAAAA-----------TC-AAAAG-T-----------TTT-AT----AT---TTTTGCCTAA------GGTG-GGTAGAATAATAATTACAGGA--TTTGCTTTT-CGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT-T---------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAAAA-----------TG-AAATG-T-----------TGA-TATG--ATCT-TTGCGTT-AA------GGTG-GGTAGAATAA---TTACAGGG--TA--TTTTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA-T----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAAAAAA---------ATT-AAATA-C-----------CTA-AA----TT---TTTTGGG---ATTGTAGTTGGGATA-------------------TT-----TT-ATTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAA----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSim3

TAAAAA-----------TT-AAATA-A-----------TAA-AA----TT---GTTTGATGTA------GGTGGGGTAAAATAG---GTAAAGAA--CT--CT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA-T----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSec2

TAAAAA-----------TT-AAATA-A-----------TAA-AA----TT---GTTTGATGTA------GGTGGGGTAAAATAG---GTAATAAA--CA--CT-----TTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAAAA-T----------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TAAAAA-----------TT-AAATA-T-----------TAC-AG----TT---GTTTGCTATA------GGCG-GGTAAAATAA---GTAAAG------------------TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATGA------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body
No Reads

droEre2

TAAAAA-----------TG-AAATA-A-----------TAC-AT----TT---GTGTGCTATA------ATTG-GGTAAAATAA---G-AAGGAATACA--C------TTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA-GTATTAATTATGGT--CAA----ATAATA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	M060 Embryo	V040 Embryo	V107 Male-body	V108 Head
No Reads

Generated: 04/16/2014 at 10:20 AM