dvi_9486

Name	Class	Family	Strand
(CAAAA)n	Simple_repeat	Simple_repeat	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_12932:1351726-1351976 +	dvi_9486	ACATAT------------------------------------------------------------------------------------------------------TTCTGATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGATGGCTATGCCCTGTCCCAG----------------------------------------------GTACGTGCGCTGTCGCTGTCGCTGTCG----TCACCTGTTTCCAGCAGTAAAATCAAACAAACAAAACAAAACAATACAAAAAAAAAAAAA--------AAAA---------AAA-------------AAGA--------------CAATGA--AGC-----------AGATTAAATAATCGCATCGTGGAA------AAATCGATAAGTGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT-------CAG------AC------A--------------GACCAACCG-CCCGACCA-CCGCCCGCCCGCCCGCCCGTGCCGCA
droMoj3	scaffold_6473:3115390-3115547 -		ATATTT------------------------------------------------------------------------------------------------------ACCTAATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGACGGTTATGCCCTGTCCCAGGTAGGTGTCAATGCCAACCAGACAACCAGCCAGCCAGCTACATAGA-------------------------------------------------------------------------------------------------------------------AAATTTCATTCAA----------------------------------------A---------------TTGTGGAA------AAATCAATATTTGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---ATTTTATA-C-----ACTGT------------------------------------GT---------AGC---------------------TCTA--------
droGri2	scaffold_15252:6710324-6710479 -		GCAACG-------------------------------------------------------------------------------------------------------CCTGCTGC-------------------------------------------------------------------------------------------------CCACAATGAAATACAATTTAAGCGCCTTTAATGAA----------------------------------------------CTACGTGCAACGCAAACTCCACTAACAATAAC----TCCTTGCTTTGGTAAAAG---------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACT----------------------------------------------------------------------------------------CAAACAGCAAAAAAAAAAAAA------------------------AAA---------------------------------AAAAACCGAAA-A-----ATAAT------------------------------------CA---------AAA---------------------TAAA--------
droWil2	scf2_1100000004590:1769135-1769257 -		GCATTTC-------------------TCATTGCAACCCT------TGAGGGTCATGACGGGCCGGCTTTGTTCCAAAGCGCGCGCGCACCTTTACCAATACAAAAAGAACA----------------------------AAA------------A-CAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--AAC-----------AAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA---------------------------------AAAAACAAAAC-------------------------------------------------------------------------------------AA--------
dp5	XL_group1e:4408830-4408923 +		ACATCT------------------------------------------------------------------------------------------------------ATCTAATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGATGGCTATGCCCTGTCCCAG----------------------------------------------GTACGTTCGCTCTACAGTACGCGCGGGCGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCTG-TT---------------------TGCA--------
droPer2	scaffold_9:1872031-1872129 -		AAAACA------------------------------------------------------------------------------------------------------AAAC------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAACAAAA-------AAAAAAAAAAAA--------AA---------ACAAA-------------AATA--------------CAAGAAAGAAA-----------CAACCAAA--------CCATCAAA------GATTCAGCAAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATA-TC---------------------AAAC--------
droAna3	scaffold_13337:6548493-6548615 -		AGCAAAA--------------------------------------------------------------------------------------------------------------------------AAA-----------ATAAAATCAAA-AAAAAAAAAATACTGAAA-AAGAA------------------AAAGAGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATAAAAACAAGAATCACTGTG------------------G---------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAAAAT---------GCGGCC--------------------------------------CAA------AC----AT-GCAGCCCAGCTCGC---------TGC---------------------CACA--------
droBip1	scf7180000395916:20435-20569 -		CAATAACAATAACAAACAAAGTTATCTAATTAAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACAATGCAAAAAAAAAAAATAAAAGCAAAAAAAAAGAAGAAATGG---------------------------------GAAAACAAAAAAAGCAATATGT-------GAA------GA------A--------------AAACAAACAAGT---------------------CGGC--------
droKik1	scf7180000302695:242843-242953 +		AAACACA-------------------CG--------------------------------------------------------TACACTACACTCAAAACAAAAAAAAAA----------------------------CAA------------A-A-----------------AACCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA--AAC-----------CGATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGCAACC--------ACC-------AAAGTACACACAAACCT-ACAC----------CACCACACG---------------------CTCAGCC--------
droFic1	scf7180000453912:983564-983683 -		TACGTGC-------------------ATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCTAATTTGTGTAACTATTATAAACGAAAAAAAAAAACAAACAAAATACTTTAAGAAAACGAAACAAAAAAAAAAATAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------TC------G--------------AAGCAAATG-AA---------------------AAAA--------
droEle1	scf7180000491194:438417-438565 +		CGTCGCC-------------------TCATTCTAAATGC-----------------------------------------CGCCAGCAACTTAA--------------ACAA---------------AAAAAAAG-----------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAA--------AAAAAAATA--------GAA-------------AAGG--------------CTATGA--AAA-----------AGAAAAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCT------AAAAACAAGAACGCCAAAATGT-------CAA------AC------G--------------AAGCGAACG-CC---------------------GGAC--------
droRho1	scf7180000779659:170186-170309 +		CAAACC------------------------------------------------------------------------------------------------------AAAA--------ACGCGCA------------A------------AAA-AAAAAACAAAAATAAAAGAAACGC-----------------AAAAAATATATAGCTAAAAGCAATGAATTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTGCA----------------------------------------G---------------CATTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCGACT---------------------------------------------------------------------------------------C-TCGCACGCTCGCTCAGCC--------
droBia1	scf7180000302428:2774847-2774955 -		AATATTT-------------------AA-----------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGATTTAAAAGGATATAAAAAAAGAGGAAAGAA----AGAT--------------------------AGA--------------AAGAAA--GAA-----------AAATTAAA--------TAACCAAAGACTGCAAACAGATAATTATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---------------------------------------------------AT---------------------TAGA--------
droTak1	scf7180000415394:429543-429681 +		AATAAA------------------------------------------------------------------------------------------------------ACAA---------------AAAAA-----------ATGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAAAAAAAAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAATTCGCATAATAGGCGCTGGTAAGTAATAGAAACACTAGCAATATCCACTGAC------------------------------------------------CCCCGGGAAACCACCCACCCAA----------------------------------------------------------CC-----------------------------AACCAACCACTAACCCACCC--------
droEug1	scf7180000409183:584498-584600 -		AGCAAA------------------------------------------------------------------------------------------------------AGCA--------------------AAACCAA-AAAATAAA-----------ACAAAACAAAAACT-AATAA------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTCTTGAA----------------------------------------A---------------TAATAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCATTTTAGAAAT------------------ATGCTAAAAACA-----------------------------------------AA---------------------ATTT--------
dm3	chrUextra:20148335-20148462 +		AGAAAA------------------------------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAAAAAAAAAATAATAAATAAAAAAA--------AAAAATATA--------AAA-------------CGTA-------------------A--TATTGAATTTATCTACATTAAAAAAAAAAAATATATAC------AAATGAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATGA------GT------A--------------T--------------------------------ACCA--------
droSim2	3l:16640869-16641000 -		CGTAACC-------------------ACTTTT----------------------------------------------------------------------------AAGTAATGAGAAACCAACA------------A------------ACA-AAAAAGC-----------------------------------------------------------------------AAA----------------------------------------------------------------------------------------------------------------------AACCAAACAAAA-------AAAA-----------------TATAAATCACAAAAA-------------AGTA--------------CGTGGGGGTTA-----------CTAATAAA--------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAGAGTTGAAAAAC------------------AGGAT------------------------------------AA---------AGC---------------------GAAA--------
droSec2	scaffold_11:133591-133721 -		AGCAAAC------------------------------------------------------------------------------------------------------AAA----------------AAAA---------------------A-AAAAAAAAAAAAAAAAAC-AAACAAAAGGAGAATCCCATGAACAAAAGTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTATTTTTGAG----------------------------------------A---------------TGA------------AATCGAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACAAATATTATTAAT------------------TTTCAAAAACCCAA------AT------A--------------A--------------------------------ACCG--------
droYak3	3R:9315207-9315339 +		CGTCGCC-------------------TCATTCTAAATGC-----------------------------------------CGCCAGCAACCTAA-----------------A---------------------------A------------GCT-GAACATA-----------------------------------------------------------------------AAG----------------------------------------------------------------------------------------------------------------------AACCAAAAAAAA-------AAAA--GA----AAAA----ATGT-------ACAAA-------------GACA--------------AAAAA---------------------------------------AA------GAATCAAGAACGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGT-------CAA------AC------G--------------AACTGAACG-CC---------------------GAAC--------
droEre2	scaffold_4929:16446035-16446160 -		GCCAGCA-------------------TTGTTTTTGTTGTACCTGC-----------------------------------TGCTGATGGCAGC--------------AGTAA---------------AAGCAATC-----------ACACAAAA-AAAAAAAAAAGAGTAAAT-AAATA------------------TGAAAATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCGTTGGGGGGAG------------------ACAAT------------------------------------G-------AAG-TC---------------------AATT--------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACATAT------------------------------------------------------------------------------------------------------TTCTGATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGATGGCTATGCCCTGTCCCAG----------------------------------------------GTACGTGCGCTGTCGCTGTCGCTGTCG----TCACCTGTTTCCAGCAGTAAAATCAAACAAACAAAACAAAACAATACAAAAAAAAAAAAA--------AAAA---------AAA-------------AAGA--------------CAATGA--AGC-----------AGATTAAATAATCGCATCGTGGAA------AAATCGATAAGTGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT-------CAG------AC------A--------------GACCAACCG-CCCGACCA-CCGCCCGCCCGCCCGCCCGTGCCGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................CGATGGCTATGCCCTGTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA--------AAAA---------AAA-------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	1.60	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32
...............................................................................................................TGATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGATGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................CTGATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATAT------------------------------------------------------------------------------------------------------TTCTGATGC-------------------------------------------------------------------------------------------------CCACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGATGGCTATGCCCTGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	34	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAAACAAACAAAACAAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA--------AAAA---------AAA-------------AAG........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AAACAAACAAAACAAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AACAAACAAAACAAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA--------AAAA---------AAA-------------AA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATATTT------------------------------------------------------------------------------------------------------ACCTAATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGACGGTTATGCCCTGTCCCAGGTAGGTGTCAATGCCAACCAGACAACCAGCCAGCCAGCTACATAGA-------------------------------------------------------------------------------------------------------------------AAATTTCATTCAA----------------------------------------A---------------TTGTGGAA------AAATCAATATTTGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---ATTTTATA-C-----ACTGT------------------------------------GT---------AGC---------------------TCTA--------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCAACG-------------------------------------------------------------------------------------------------------CCTGCTGC-------------------------------------------------------------------------------------------------CCACAATGAAATACAATTTAAGCGCCTTTAATGAA----------------------------------------------CTACGTGCAACGCAAACTCCACTAACAATAAC----TCCTTGCTTTGGTAAAAG---------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACT----------------------------------------------------------------------------------------CAAACAGCAAAAAAAAAAAAA------------------------AAA---------------------------------AAAAACCGAAA-A-----ATAAT------------------------------------CA---------AAA---------------------TAAA--------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GCATTTC-------------------TCATTGCAACCCT------TGAGGGTCATGACGGGCCGGCTTTGTTCCAAAGCGCGCGCGCACCTTTACCAATACAAAAAGAACA----------------------------AAA------------A-CAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--AAC-----------AAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA---------------------------------AAAAACAAAAC-------------------------------------------------------------------------------------AA--------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

ACATCT------------------------------------------------------------------------------------------------------ATCTAATGC-------------------------------------------------------------------------------------------------CCACCATGAATCCCGATGGCTATGCCCTGTCCCAG----------------------------------------------GTACGTTCGCTCTACAGTACGCGCGGGCGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCTG-TT---------------------TGCA--------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................CCGATGGCTATGCCCTGTCCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAAACA------------------------------------------------------------------------------------------------------AAAC------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAACAAAA-------AAAAAAAAAAAA--------AA---------ACAAA-------------AATA--------------CAAGAAAGAAA-----------CAACCAAA--------CCATCAAA------GATTCAGCAAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATA-TC---------------------AAAC--------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

AGCAAAA--------------------------------------------------------------------------------------------------------------------------AAA-----------ATAAAATCAAA-AAAAAAAAAATACTGAAA-AAGAA------------------AAAGAGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATAAAAACAAGAATCACTGTG------------------G---------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAAAAT---------GCGGCC--------------------------------------CAA------AC----AT-GCAGCCCAGCTCGC---------TGC---------------------CACA--------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CAATAACAATAACAAACAAAGTTATCTAATTAAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACAATGCAAAAAAAAAAAATAAAAGCAAAAAAAAAGAAGAAATGG---------------------------------GAAAACAAAAAAAGCAATATGT-------GAA------GA------A--------------AAACAAACAAGT---------------------CGGC--------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAACACA-------------------CG--------------------------------------------------------TACACTACACTCAAAACAAAAAAAAAA----------------------------CAA------------A-A-----------------AACCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA--AAC-----------CGATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGCAACC--------ACC-------AAAGTACACACAAACCT-ACAC----------CACCACACG---------------------CTCAGCC--------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACGTGC-------------------ATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCTAATTTGTGTAACTATTATAAACGAAAAAAAAAAACAAACAAAATACTTTAAGAAAACGAAACAAAAAAAAAAATAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------TC------G--------------AAGCAAATG-AA---------------------AAAA--------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGTCGCC-------------------TCATTCTAAATGC-----------------------------------------CGCCAGCAACTTAA--------------ACAA---------------AAAAAAAG-----------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAA--------AAAAAAATA--------GAA-------------AAGG--------------CTATGA--AAA-----------AGAAAAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCT------AAAAACAAGAACGCCAAAATGT-------CAA------AC------G--------------AAGCGAACG-CC---------------------GGAC--------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAACC------------------------------------------------------------------------------------------------------AAAA--------ACGCGCA------------A------------AAA-AAAAAACAAAAATAAAAGAAACGC-----------------AAAAAATATATAGCTAAAAGCAATGAATTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTGCA----------------------------------------G---------------CATTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCGACT---------------------------------------------------------------------------------------C-TCGCACGCTCGCTCAGCC--------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AATATTT-------------------AA-----------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGATTTAAAAGGATATAAAAAAAGAGGAAAGAA----AGAT--------------------------AGA--------------AAGAAA--GAA-----------AAATTAAA--------TAACCAAAGACTGCAAACAGATAATTATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---------------------------------------------------AT---------------------TAGA--------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATAAA------------------------------------------------------------------------------------------------------ACAA---------------AAAAA-----------ATGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAAAAAAAAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAATTCGCATAATAGGCGCTGGTAAGTAATAGAAACACTAGCAATATCCACTGAC------------------------------------------------CCCCGGGAAACCACCCACCCAA----------------------------------------------------------CC-----------------------------AACCAACCACTAACCCACCC--------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCAAA------------------------------------------------------------------------------------------------------AGCA--------------------AAACCAA-AAAATAAA-----------ACAAAACAAAAACT-AATAA------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTCTTGAA----------------------------------------A---------------TAATAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCATTTTAGAAAT------------------ATGCTAAAAACA-----------------------------------------AA---------------------ATTT--------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGAAAA------------------------------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAAAAAAAAAATAATAAATAAAAAAA--------AAAAATATA--------AAA-------------CGTA-------------------A--TATTGAATTTATCTACATTAAAAAAAAAAAATATATAC------AAATGAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATGA------GT------A--------------T--------------------------------ACCA--------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATG...........................................................................	21	20	2.10	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	5	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTAT............................................................................	21	20	1.95	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	19	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATGA------GT------A--------------T--------------------------------............	21	20	1.90	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TATA--------AAA-------------CGTA-------------------A--TATTGAATT........................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.85	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................ATATA--------AAA-------------CGTA-------------------A--TATTGAAT.........................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.75	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGTTATGA------GT------A--------------T--------------------------------ACCA--------	21	20	1.55	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	7	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATGA------GT------............................................................	21	20	1.35	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	2	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAGTTATGA------GT------A--------------T--------------------------------ACC.........	21	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TATGAAAAAAAAAAAATAATAAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	1.17	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATGA------GT------............................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGAAAA------------------------------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AA--------AAAAATATA--------AAA-------------CGTA-------------------A--TATT.............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCTACATTAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTATG...........................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTGAAGTTAT............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A--TATTGAATTTATCTACATTAAAAA.........................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATA--------AAA-------------CGTA-------------------A--TATTGAAT.........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGTAACC-------------------ACTTTT----------------------------------------------------------------------------AAGTAATGAGAAACCAACA------------A------------ACA-AAAAAGC-----------------------------------------------------------------------AAA----------------------------------------------------------------------------------------------------------------------AACCAAACAAAA-------AAAA-----------------TATAAATCACAAAAA-------------AGTA--------------CGTGGGGGTTA-----------CTAATAAA--------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAGAGTTGAAAAAC------------------AGGAT------------------------------------AA---------AGC---------------------GAAA--------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATAAA--------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAGAGTTGAAAAAC------------------AGGA....................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAGAGTTGAAAAAC------------------AGGA....................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGTTGAAAAAC------------------AGA.....................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

AGCAAAC------------------------------------------------------------------------------------------------------AAA----------------AAAA---------------------A-AAAAAAAAAAAAAAAAAC-AAACAAAAGGAGAATCCCATGAACAAAAGTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTATTTTTGAG----------------------------------------A---------------TGA------------AATCGAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACAAATATTATTAAT------------------TTTCAAAAACCCAA------AT------A--------------A--------------------------------ACCG--------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CGTCGCC-------------------TCATTCTAAATGC-----------------------------------------CGCCAGCAACCTAA-----------------A---------------------------A------------GCT-GAACATA-----------------------------------------------------------------------AAG----------------------------------------------------------------------------------------------------------------------AACCAAAAAAAA-------AAAA--GA----AAAA----ATGT-------ACAAA-------------GACA--------------AAAAA---------------------------------------AA------GAATCAAGAACGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGT-------CAA------AC------G--------------AACTGAACG-CC---------------------GAAC--------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GCCAGCA-------------------TTGTTTTTGTTGTACCTGC-----------------------------------TGCTGATGGCAGC--------------AGTAA---------------AAGCAATC-----------ACACAAAA-AAAAAAAAAAGAGTAAAT-AAATA------------------TGAAAATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCGTTGGGGGGAG------------------ACAAT------------------------------------G-------AAG-TC---------------------AATT--------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_9486

scaffold_12932:1351776-1351926 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACATATTTCTGATGCCCACCATGAATCCCGATGGCTATGCCCTGTCCCAGGTACGTGCGCTGTCGCTGTCGCTGTCGTCACCTGTTTCCAGCAGTAAAATCAAACAAACAAAACAAAACAATACAAAAAAAAAAAAAAAAAAAAAAGACAATGAAGCAGATTAAATAATCGCATCGTGGAAAAATCGATAAGTGTGAAATTTCAGACAGACCAACCGCCCGACCACCGCCCGCCCGCCCGCCCGTGCCGCA **************************************************************************************************.............................................********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	SRR060687 9_0-2h_embryos_total	M047 female body	SRR060664 9_males_carcasses_total	SRR060667 160_females_carcasses_total	SRR060677 Argx9_ovaries_total	SRR1106729 mixed whole adult body	SRR060669 160x9_females_carcasses_total	V053 head	SRR060671 9x160_males_carcasses_total	SRR060681 Argx9_testes_total	M027 male body	SRR1106713 embryo_0-2h	SRR060672 9x160_females_carcasses_total	SRR060665 9_females_carcasses_total	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h
............................CGATGGCTATGCCCTGTCCC...........................................................................................................................................................................................................	20	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AAAAAAAAAAAAAAAAAAA..........................................................................................................	19	0	20	1.60	32	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TGTGGAAAAATCGATAAGTGT........................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGATGCCCACCATGAATCCCGATGGC........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CTGATGCCCACCATGAATCCCGAT...........................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATATTTCTGATGCCCACCAT.....................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............GCCCACCATGAATCCCGATGGCTATGCCCTGTCC............................................................................................................................................................................................................	34	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................CGCTGTCGTCACCTGTTTCCGGCA..............................................................................................................................................................	24	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATAAAAAGACAATGAAGC..............................................................................................	18	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TCAAACAAACAACTCAAAACA...................................................................................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AACAAAAAAAACCAACACAAAAAAAAAAAAAAAAAA.............................................................................................................	36	3	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACAATCGATTGGTGTGAAATTT.................................................	22	3	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CAAACAAACAAAACAAAACA...................................................................................................................................	20	0	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATTTCATACAGACCA......................................	15	1	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	1
............................................................................................................CAAACCAAAGCTATACAAAAAAAAAAA....................................................................................................................	27	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................CGCTGGCGCTGTCGCTGTCGT.............................................................................................................................................................................	21	1	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................AAAAAAAAAAAAAAAAAAAAAG........................................................................................................	22	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AAACAAACAAAACAAAACA...................................................................................................................................	19	0	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AACAAACAAAACAAAACA...................................................................................................................................	18	0	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................AAAAAAAAAAAAAAAAAAAAAA.........................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................ACAAAAGAATAGAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................	36	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................TCAAACAAACAACTCAAAACAAA.................................................................................................................................	23	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................CTCAAACAAACAACTCAAAAC....................................................................................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

TGTATAAAGACTACGGGTGGTACTTAGGGCTACCGATACGGGACAGGGTCCATGCACGCGACAGCGACAGCGACAGCAGTGGACAAAGGTCGTCATTTTAGTTTGTTTGTTTTGTTTTGTTATGTTTTTTTTTTTTTTTTTTTTTTCTGTTACTTCGTCTAATTTATTAGCGTAGCACCTTTTTAGCTATTCACACTTTAAAGTCTGTCTGGTTGGCGGGCTGGTGGCGGGCGGGCGGGCGGGCACGGCGT ********************************************************************************************************.............................................**************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M028 head	M027 male body	M047 female body	V116 male body	V053 head	SRR060662 9x160_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060663 160_0-2h_embryos_total	SRR060681 Argx9_testes_total	GSM1528803 follicle cells	M061 embryo	V047 embryo	SRR060687 9_0-2h_embryos_total	SRR060654 160x9_ovaries_total	SRR060658 140_ovaries_total	SRR060659 Argentina_testes_total	SRR060667 160_females_carcasses_total
.......................................................................................................................................................................................................................TCGGGCTGGTGGCGGGCGGGCG..............	22	1	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GTGGCGGGCGGGCGGGCG..........	18	0	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ACGCGACAGCGACAGCGACAGCAG............................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CTGGTGGCGGGCGGGCGGGCG..........	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCGGGCTGGTTGCGGGCGGGCG..............	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GGGTCCATGCACGCGACAGCGA........................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CTGGTGGCGGGCGGGCGGGCGG.........	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GGTGGCGGGCGGGCGGGCG..........	19	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATGGTGGCGGGCGGGCGGGC...........	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AGCGACAGCGACAGCAGTG..........................................................................................................................................................................	19	0	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TCGGGCTGGTGTCGGGCGGGC...............	21	2	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGGTGGTACTTCGGGCAA...........................................................................................................................................................................................................................	18	2	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGGGTGGTGCTTAGGGCCA...........................................................................................................................................................................................................................	19	3	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TCGGGTTGGCGGGCTGGCG.........................	19	2	16	0.13	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTCTGTTGCATCGTCTAATC.......................................................................................	20	3	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ACGCGACAGCGACAACGAC.................................................................................................................................................................................	19	1	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AGTCTGGCCGGTTGGC..................................	16	2	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...............................................................GCGCCAGCGACAGAAGTTG.........................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
.............................................................CAGCGACAGCGACAGCAG............................................................................................................................................................................	18	0	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCGTGGCGGGTGGGCGGGC...........	19	2	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................GTTATGTTTTTTTATTTTTATTTTTTTT.........................................................................................................	28	2	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................CAGTGACAGCGACAGTAGT...........................................................................................................................................................................	19	2	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................CAGCGACAGCGACACAAGT...........................................................................................................................................................................	19	2	13	0.08	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TCAGCGACAGCGACAGAAGT...........................................................................................................................................................................	20	2	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CGACAGCGACAGCGACAG...............................................................................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................CTGTTATGTTTTTTTATTTTTATTTTTTT..........................................................................................................	29	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................CGACAGCGACAGCGACAGC..............................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1