dvi_9401

Name	Class	Family	Strand
(TA)n	Simple_repeat	Simple_repeat	+

----------------------------------------##########--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCATATATTATTATTAGTATATGTGTGTCTGTCTATCGAGATGTTCATTTGTAAGCCACAGCAAATGTCGAGTCAGTCGGTTTGTGGAGCTGTTCAAGCCCAATATTGACCAAGCCATGTCATATGTATCTATATATATATATATATATATATAAGCAGGCAGTTATATAGATTCCCGGCAAATTGAAAAACAAAACAAATTGAAATTAATTTATGTATTTTAGTTAATTAGTTAGCCAAGTGCGTAGCGT ************************************************.............................((((((.......((((((((...(((((((...(((.(((..(((((((.((((((....)))))).))))))).)))))).)))).))).......)))...))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060672 9x160_females_carcasses_total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	SRR060685 9xArg_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060665 9_females_carcasses_total	SRR060688 160_ovaries_total
..................................................GTAAGCCACAACAAATGTCGA....................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................GTTAATTAGTTAGCCAAGTG........	20	0	1	1.00	1	1	0	0	0	0	0	0	0
..................................................GTAAGCCACAACAAATGTCGAGTCAGT..............................................................................................................................................................................	27	1	1	1.00	1	0	0	1	0	0	0	0	0
..........TTATTAGTATATGTGTGTCTG............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................AGATAGATTCCCGGCAAATTGAAAAA............................................................	26	1	1	1.00	1	0	1	0	0	0	0	0	0
....................................................................................................CAATATTGACCAAGCCATGTCATATGT............................................................................................................................	27	0	1	1.00	1	0	0	0	0	1	0	0	0
...............................................................................................GATCCCAATATTCACCAAGCC.......................................................................................................................................	21	3	2	0.50	1	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................AATTGAAAAACAACACAAATGGAAC.............................................	25	3	2	0.50	1	0	0	0	0	0	0	1	0
...TATATTATTATGAGTGTATGTGT.................................................................................................................................................................................................................................	23	2	3	0.33	1	0	0	0	0	0	0	0	1
..........................GTCTGCCAATCGAGATGTT..............................................................................................................................................................................................................	19	2	5	0.20	1	0	0	0	0	0	1	0	0

GGTATATAATAATAATCATATACACACAGACAGATAGCTCTACAAGTAAACATTCGGTGTCGTTTACAGCTCAGTCAGCCAAACACCTCGACAAGTTCGGGTTATAACTGGTTCGGTACAGTATACATAGATATATATATATATATATATATATTCGTCCGTCAATATATCTAAGGGCCGTTTAACTTTTTGTTTTGTTTAACTTTAATTAAATACATAAAATCAATTAATCAATCGGTTCACGCATCGCA ************************************************.............................((((((.......((((((((...(((((((...(((.(((..(((((((.((((((....)))))).))))))).)))))).)))).))).......)))...))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060670 9_testes_total	M028 head	SRR060683 160_testes_total	SRR060671 9x160_males_carcasses_total	SRR060666 160_males_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060673 9_ovaries_total	SRR1106729 mixed whole adult body
.............................................................................GCCAAACACCTCGACAAGTTC.........................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................AGAGATCGAAGGGCCGTTT....................................................................	19	3	20	0.35	7	0	4	0	2	0	0	0	1	0
............................................................CGCTTCAAGCTCAGTCAGCC...........................................................................................................................................................................	20	3	4	0.25	1	0	0	1	0	0	0	0	0	0
.....................................................................................CCTCTACAAGTTCTGGTTAA..................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................AAGAGATCGAAGGGCCGTTT....................................................................	20	3	10	0.10	1	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................ATAGATCGAAGGGCCGTTG....................................................................	19	3	19	0.05	1	0	0	0	1	0	0	0	0	0
....................................................................GCTCAGTCAGCCCAACATT....................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCAGTAAATACATTAAATCAA.........................	21	3	20	0.05	1	0	0	0	0	0	1	0	0	0
............................................................................................AAACTTGGGTTATAACTGG............................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0
..................................TAGGTCTACTAGTAAA.........................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12932:861794-862044 -	dvi_9401	CCATATATTATTATTAGTATATGTGTGTCTGTCTATCGAGATGTTCATTTGT--AAGCCACAGCAAATGTCGAGTCAGTCGGTTTGTGGAGCTGTTCAAGCCCAATATTGAC-------------------------------CAAGCCATGTCAT----ATGTATCTATATATATATATATATATATATAAGCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATATAGAT--------------------------------------------------------TCCC--------GGCAAATTGAAAAACAAA----ACAAATTGAAATTA-----------ATTTAT-------------------GTATTTT----AGTTAATTAGTTAGCC-AA------------------------------------GTGCGTAGCG--------------------------------T
droMoj3	scaffold_6473:695183-695314 +		ACTGAC-----------------------------------------------------------------------------------------------------------------------------------------TAAGCCATGTCATAAGCAGATATCTAT--------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATATATAT----------------TTATATATATATATAT--------CCTTA---------------------------------------------------------TTAATTGAA--GCAAATCTGTCAAAGTGAAATTA-----------ATTTAT-------------------GTATTTT----AGTTAATTAGTTAGCC-AA------------------------------------GTA----------------------------------------
droGri2	scaffold_14853:2027835-2028116 -		TA-TATGTATGTTTAT--------------------ATATATATATATGTGTGC-------------------------------------------------------------------------TT------------------------------------------------------------------TTTGTGTGTCTAATTTGAATCTTTGTGGCTAATCTAATTTGTAAGCAAATCGAGTCAGTC---------------------------------------------------------------------------------------------------------AGTGGAGCTG----GTTTTTCT-TTTCTC-CATATTTAAACATATATAT----------------ACATATATATATATAT--------TCCTAATATTGAATTCGAAAGCAAAATATTACCAGAGAAAAAAGCAGAAACAAATACAAAAACAACTTCAAAC-----------GAAATGAAATTA-----------ATTGAT-------------------GTATTTT----AGTGAATTAGCTAGCCGAA------------------------------------GTGCGTTGCG--------------------------------T
droWil2	scf2_1100000004511:1999447-1999596 +		AGAGAGAGTATTAGCTATGTATGTATGGATGGATG---------------------------------------------------------GATGCAACACCAAAAGTAACAACAAATTAATCCAAGAAAACAAAAATTCTATACATTATGTAGTTGGTACATGTCTAT--------ATATATGTATATATATATA------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_24:80569-80633 -		CA-TATGTATATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ACATAAATATATATATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT----------------------------------------------------CGGAACCC--------GACAATCTTAAAC-----------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_13:2231821-2231931 +		GTATATGCATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATAACCCAATAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------AATGATATAAAAT-----------GAA-----ATTAAATCA------ATATA------------------TTGTATATTCAGGAATTGATTAATTTAGT-AA------------------------------------ATATTTAGTG---------------------------------
droAna3	scaffold_13250:2797867-2797905 -		CATGCCACTTATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396573:141742-141876 -		ATGCT-AAATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATTTATATATATATATGAA-------------------------AAAACGTGAATTT-------------------CTCAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------TTTTACAATTGTTGGCTAATTTGTTTGTT-AT------------------------------------ACATATAGAGATATATTCTTTATATATTTTGAATTAATTTATT
droKik1	scf7180000302344:690113-690266 +		ACATTA-TTATTATGTATGTATGTATGTAGTA----CGAAGTAAT-ATTTGT--ATAGCA--------------------------------------------CTATTATTATTATTTTTATTTACGAA------------------------------------------------------------------A----------------------------------------------ATCGAATAGGCGCTTTGAATTGTTTTACTTATTAAACCGGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATACACATATATATATAAATATAAAC---------------------------------------------
droFic1	scf7180000454072:39254-39286 -		ATATGTATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAATACATATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490661:22384-22462 +		TCATTTTTTGATGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAACCAATGTAGATCT-------------------CTGACAC---------------------ACAACTTGATATGTACGTGTATATATGTATGTATGTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000770477:80747-80849 -		ATATATATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATACATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATATATAGATATATATATAA-------------------------------------------------------------------------------------------------ATATATTTATTTAT--------------------------------TTATTTAGGTAT-------------------------------------ATCAGGGTTTAGCG--------------------------------C
droBia1	scf7180000302334:666807-666858 -		ATATTTATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409064:21522-21597 -		ATATATATATGTATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATAAATAGG----------------------------------------------------------------------------------------------------------------------------------TGCGTTGTTTAAAAAACAAA-------------------------------------------------------------------------------------------CAA----------------------------------------------------CAGAACTCACTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrU:8430708-8430842 -		CCATGTATATATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTATATACGTATATATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGTACATATGTATATATGC-------------------------------------------------------------------------------------------------ATATATCTATATATGTATATATGTATATATGTCATCTA------------------------TGTACATATGTATCTATGTATATATGTATATATGT---------------------------------------------
droSim2	x:3387522-3387656 +		ATATATTTATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATCTGCATAAACATTCAAGCATACAANN-----NNNNNCAGCTATGACCATCCTCGAGC-----------------------------------------------------------------------------------------------------------AGCTGAAGCTCCAATGGTGGTG----GAATTCCT-TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAATATATATTTATATATATAT---------------------------------------------
droSec2	scaffold_1:5946046-5946164 -		ATATATATAAATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATGTA----------------------------------------------------------------------------------------------------------------------TATATATT----TAAGTAATTTAATCAACCAGCACTTGACCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTTGGGCCTA-----------ACCCAT-------------------GTTATTG----TGTTAATTAAGTAG------------------------------------------------------------------------------------
droYak3	v2_chrUn_003:245878-246136 +		ATATAG-TACTTATTATTATATACATATAGGTCCATATACATATACATGTATGC-------------------------------------------------------------------------AGA------------------------------------------------------------------AGGCA---------------------------TGCATAT-------------------GTCATGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAGCATTCCCACG-CTCATATATATATACATATATATACATATATATACATATATATACATATATATACATATATATAC-------------------------------------------------------------------------------------------------ATATATATACATATATATACATATATATACAT-ATATA------------------------TACATATATATACATATATATACATATATATACAT---------------------------------------------
droEre2	scaffold_289:566-673 -		ATATATATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATATATATATATATAT-------------------------------------------------------------------------------------------------ATATATATATATAT---------------------------------------------------ATATATATATATATATATATATATATATATAT---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCATATATTATTATTAGTATATGTGTGTCTGTCTATCGAGATGTTCATTTGT--AAGCCACAGCAAATGTCGAGTCAGTCGGTTTGTGGAGCTGTTCAAGCCCAATATTGAC-------------------------------CAAGCCATGTCAT----ATGTATCTATATATATATATATATATATATAAGCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATATAGAT--------------------------------------------------------TCCC--------GGCAAATTGAAAAACAAA----ACAAATTGAAATTA-----------ATTTAT-------------------GTATTTT----AGTTAATTAGTTAGCC-AA------------------------------------GTGCGTAGCG--------------------------------T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTAGTTAGCC-AA------------------------------------GTG........................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTATTAGTATATGTGTGTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................CAATATTGAC-------------------------------CAAGCCATGTCAT----ATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACTGAC-----------------------------------------------------------------------------------------------------------------------------------------TAAGCCATGTCATAAGCAGATATCTAT--------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATATATAT----------------TTATATATATATATAT--------CCTTA---------------------------------------------------------TTAATTGAA--GCAAATCTGTCAAAGTGAAATTA-----------ATTTAT-------------------GTATTTT----AGTTAATTAGTTAGCC-AA------------------------------------GTA----------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGTCAAAGTGAAATTA-----------......................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

TA-TATGTATGTTTAT--------------------ATATATATATATGTGTGC-------------------------------------------------------------------------TT------------------------------------------------------------------TTTGTGTGTCTAATTTGAATCTTTGTGGCTAATCTAATTTGTAAGCAAATCGAGTCAGTC---------------------------------------------------------------------------------------------------------AGTGGAGCTG----GTTTTTCT-TTTCTC-CATATTTAAACATATATAT----------------ACATATATATATATAT--------TCCTAATATTGAATTCGAAAGCAAAATATTACCAGAGAAAAAAGCAGAAACAAATACAAAAACAACTTCAAAC-----------GAAATGAAATTA-----------ATTGAT-------------------GTATTTT----AGTGAATTAGCTAGCCGAA------------------------------------GTGCGTTGCG--------------------------------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AGAGAGAGTATTAGCTATGTATGTATGGATGGATG---------------------------------------------------------GATGCAACACCAAAAGTAACAACAAATTAATCCAAGAAAACAAAAATTCTATACATTATGTAGTTGGTACATGTCTAT--------ATATATGTATATATATATA------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................ATA------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGT..........................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................................TATATATATA------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGT..........................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	2	0
................................................................................................................................................................................................ATATA------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGT..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGT..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................CTATACATTATGTAGTTGGTACATGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................TATA------------------------------------------------------------------------------------------------------------------TGAATATATAGATGTGT..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
......................GTATGGATGGATG---------------------------------------------------------GATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	1	0
.....................................................................................................................................................................TCTAT--------ATATATGTATATATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................CTAT--------ATATATGTATATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................CTAT--------ATATATGTATATATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0

dp5

CA-TATGTATATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ACATAAATATATATATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT----------------------------------------------------CGGAACCC--------GACAATCTTAAAC-----------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GTATATGCATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATAACCCAATAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------AATGATATAAAAT-----------GAA-----ATTAAATCA------ATATA------------------TTGTATATTCAGGAATTGATTAATTTAGT-AA------------------------------------ATATTTAGTG---------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

CATGCCACTTATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ATGCT-AAATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATTTATATATATATATGAA-------------------------AAAACGTGAATTT-------------------CTCAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------TTTTACAATTGTTGGCTAATTTGTTTGTT-AT------------------------------------ACATATAGAGATATATTCTTTATATATTTTGAATTAATTTATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACATTA-TTATTATGTATGTATGTATGTAGTA----CGAAGTAAT-ATTTGT--ATAGCA--------------------------------------------CTATTATTATTATTTTTATTTACGAA------------------------------------------------------------------A----------------------------------------------ATCGAATAGGCGCTTTGAATTGTTTTACTTATTAAACCGGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATACACATATATATATAAATATAAAC---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATATGTATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAATACATATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCATTTTTTGATGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAACCAATGTAGATCT-------------------CTGACAC---------------------ACAACTTGATATGTACGTGTATATATGTATGTATGTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATATATATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATACATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATATATAGATATATATATAA-------------------------------------------------------------------------------------------------ATATATTTATTTAT--------------------------------TTATTTAGGTAT-------------------------------------ATCAGGGTTTAGCG--------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATATTTATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATATATATATGTATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATAAATAGG----------------------------------------------------------------------------------------------------------------------------------TGCGTTGTTTAAAAAACAAA-------------------------------------------------------------------------------------------CAA----------------------------------------------------CAGAACTCACTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCATGTATATATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTATATACGTATATATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGTACATATGTATATATGC-------------------------------------------------------------------------------------------------ATATATCTATATATGTATATATGTATATATGTCATCTA------------------------TGTACATATGTATCTATGTATATATGTATATATGT---------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATCTATATATGTATA...........................................................................................................................	19	11	0.36	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGTATATACGTATATATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.....................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTATGTATATATGTA....................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATATATTTATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATCTGCATAAACATTCAAGCATACAANN-----NNNNNCAGCTATGACCATCCTCGAGC-----------------------------------------------------------------------------------------------------------AGCTGAAGCTCCAATGGTGGTG----GAATTCCT-TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAATATATATTTATATATATAT---------------------------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ATATATATAAATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATGTA----------------------------------------------------------------------------------------------------------------------TATATATT----TAAGTAATTTAATCAACCAGCACTTGACCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTTGGGCCTA-----------ACCCAT-------------------GTTATTG----TGTTAATTAAGTAG------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ATATAG-TACTTATTATTATATACATATAGGTCCATATACATATACATGTATGC-------------------------------------------------------------------------AGA------------------------------------------------------------------AGGCA---------------------------TGCATAT-------------------GTCATGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAGCATTCCCACG-CTCATATATATATACATATATATACATATATATACATATATATACATATATATACATATATATAC-------------------------------------------------------------------------------------------------ATATATATACATATATATACATATATATACAT-ATATA------------------------TACATATATATACATATATATACATATATATACAT---------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGC...............................................................................................................................................................................................................................................................................................................................	27	20	23.75	475	0	298	149	28	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGC...............................................................................................................................................................................................................................................................................................................................	26	20	2.10	42	0	42	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCT..............................................................................................................................................................................................................................................................................................................................	26	20	1.85	37	0	0	1	0	0	0	0	0	0	0	36
............................................................................................................................................................................................................................................................................GACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATG................................................................................................................................................................................................................................................................................................................................	25	20	0.90	18	0	18	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCAT.................................................................................................................................................................................................................................................................................................................................	25	20	0.65	13	0	0	2	0	0	0	0	0	0	0	11
.....................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTGCATGCTCAGCATTCCC....................................................................................................................................................................................................................................................................................................................	25	20	0.60	12	0	12	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTGCATGCTCAGCATTCCCA...................................................................................................................................................................................................................................................................................................................	26	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8
...............................................................................................................................................................................................................................................................................................................................................................................ATGCTCAGCATTCCCACG-CTC.............................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATG................................................................................................................................................................................................................................................................................................................................	27	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTC.............................................................................................................................................................................................................................................................................................................................	29	20	0.30	6	0	2	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TGCATGCTCAGCATTCCCACG-CTC.............................................................................................................................................................................................................................................................................................................	24	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGC...................................................................................................................................................................................................................................................................................................................................	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TAT-------------------GTCATGTATGGTCTGACCACTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GCATGCTCAGCATTCCCACG-C...............................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
...................................................TGC-------------------------------------------------------------------------AGA------------------------------------------------------------------AGGCA---------------------------TGCATAT-------------------GTCATGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCA.........................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................GACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCT..............................................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTGCATGCTCAGCATTCC.....................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAG......................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCG..................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCA..................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAG......................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAG...........................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATG................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAGCATTCCC....................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................C-------------------------------------------------------------------------AGA------------------------------------------------------------------AGGCA---------------------------TGCATAT-------------------GTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATG................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
...................................................TGC-------------------------------------------------------------------------AGA------------------------------------------------------------------AGGCA---------------------------TGCATAT-------------------GTCATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGC..........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCA..................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGCATAT-------------------GTCATGTATGGTCTGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCA............................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAG......................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AGTGCATGCTCAGCATTCCCACG-CTC.............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGC...................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................ACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCA............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGC...............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AT-------------------GTCATGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CATGCTCAGCATTCCCACG-CT..............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................GTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGC..........................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................T-------------------GTCATGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGC...................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTG....................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAGCATT.......................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAA.......................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCA............................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................T-------------------GTCATGTATGGTCTGACCACT...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGC...................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAA........................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AAAGTGCATGCTCAGCATTCCCACG-C...............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAGCATTCCC....................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAA.......................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CAAAGTGCATGCTCAGCATTCCCACG-................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCA..................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TCATGTATGGTCTGACCACTTGAGC-----------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................GC-------------------------------------------------------------------------AGA------------------------------------------------------------------AGGCA---------------------------TGCATAT-------------------GTCATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGT...............................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGAGC-----------------------------------------------------------------------------TGCAAAGTGCATGCTCAGCA.........................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTGCATGCTCAGCATTCCCACG-................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TGGTCTGACCACTTGAGC-----------------------------------------------------------------------------TGCAAAGTG....................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTGCATGCTCAGCATTCCCACA-................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ATATATATATATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATATATATATATATAT-------------------------------------------------------------------------------------------------ATATATATATATAT---------------------------------------------------ATATATATATATATATATATATATATATATAT---------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-30.1	-30.1	-29.9	-29.9

dvi_9401

scaffold_12932:861844-861994 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads