ID:

dvi_9345

 Coordinate:

scaffold_12932:262923-263179 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_15042:6]; CDS [Dvir\GJ14810-cds]; exon [dvir_GLEANR_15042:7]; CDS [Dvir\GJ14810-cds]; intron [Dvir\GJ14810-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGTCTTCATATTGGCCATCTTCGAGCTGGCGGGCATCGTTTGGATATATGGTAAGATAATATTTTAAGGCCTCAGGTTTGTGGAGAAAATGCCCTTGCTTTGGATCGCCAATGTATCTTCTCGGCGACATTGTTGCGAGTCTTCTTCTAGGCTAACATATGCATATATATGCAAAACGAGTCATTCTTTCTCGATATACCTTACCTATTTCTATTTGATCGATAACTATCGATTTGTCGAAACTCTATCAAATAATATCTATTATTATTCTAATCTTAATCTATCAAACTATCCATCTATTTTCAAGGCCTGCAAAACTTTTGCGATGATATCGAGTTCATGAGCAACAAGAAGGTT
**************************************************.((((((.........(((....((((.(((.(((((((((..((((.((((..((((((((((..((....))..))))))..))))((((......))))...((((((....)))))))))).)))).)))..)))))).))).))))..))).((((.((..(((((((....))))))).)).))))........(((((((.....)))))))...)))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M047
female body
 SRR060679
140x9_testes_total
 V053
head
 SRR060664
9_males_carcasses_total
 M061
embryo
 SRR060655
9x160_testes_total
 M028
head
...........................................................................................................................................................................................................................................................................................................................AACTTTTGCGATGATATCG....................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CATCTGTTTTCAAGGCCAG............................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0
..............................GGGCATCGTTTGGATATATGGCC................................................................................................................................................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GATATCGAGTTCATGAGCAA.......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................TCGAGTCTTCTTCTGGGCGAA.......................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0
.......................................................................TCAGGATTGTGGAAAAAA............................................................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 1 0 0 0
...........................................................................GTTTGTGGGGTAAAGGCCC....................................................................................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 1 0 0
...................................................................................................................................AGTGCGAGTCTTCTTCTGGG.............................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TTCATGAGCGACAAAAAG... 18 2 13 0.08 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................................ATATCGAGTTCATGATCGAT......... 20 3 14 0.07 1 0 0 0 0 0 0 0 1
.......................................................................................................................................CGAGTCTTCTTCTGGGCAC........................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................GGTCGAGTCTTCTTCTAG............................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TTCTCAACATACCGTACCTAT..................................................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................TGGTCTAAGGCCTCAGGT........................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

CCAGAAGTATAACCGGTAGAAGCTCGACCGCCCGTAGCAAACCTATATACCATTCTATTATAAAATTCCGGAGTCCAAACACCTCTTTTACGGGAACGAAACCTAGCGGTTACATAGAAGAGCCGCTGTAACAACGCTCAGAAGAAGATCCGATTGTATACGTATATATACGTTTTGCTCAGTAAGAAAGAGCTATATGGAATGGATAAAGATAAACTAGCTATTGATAGCTAAACAGCTTTGAGATAGTTTATTATAGATAATAATAAGATTAGAATTAGATAGTTTGATAGGTAGATAAAAGTTCCGGACGTTTTGAAAACGCTACTATAGCTCAAGTACTCGTTGTTCTTCCAA
**************************************************.((((((.........(((....((((.(((.(((((((((..((((.((((..((((((((((..((....))..))))))..))))((((......))))...((((((....)))))))))).)))).)))..)))))).))).))))..))).((((.((..(((((((....))))))).)).))))........(((((((.....)))))))...)))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 V116
male body		 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 V047
embryo
 SRR060675
140x9_ovaries_total
 SRR060670
9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 SRR060660
Argentina_ovaries_total
 SRR060679
140x9_testes_total
 SRR1106729
mixed whole adult body
...................................................................CCGGAGTCCAGGCTCCTCTTTTA........................................................................................................................................................................................................................................................................... 23 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................CAAGTGCTCGTAGTTCTTC... 19 2 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TAGCGGTGACATAGAACAG........................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................CGATCGACCGTAGCAAACCAAT....................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTCTTTTTCGGGAACTAA................................................................................................................................................................................................................................................................. 18 2 10 0.30 3 0 0 0 0 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AGATTAGGATTAGGTGGTTTG.................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACGTGTATATACCTTTTGCT.................................................................................................................................................................................. 21 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................TACGGAGTCCAAACAGCT................................................................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGGTAGGTAAAAGTTCCG................................................ 18 2 19 0.11 2 0 0 0 0 0 0 0 0 0 0 2 0 0
.........................................................................................ACGGGAACGAACCTTATCGG........................................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................ACGAAACCTGGTGGGTACA................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................TAGAAAATTTCGTAGTCCAAA...................................................................................................................................................................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................GCTTTGTGATAGTTTGTT...................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................GCTCAGAAGAAGACCCGTG........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................AAAGCCGCTGTCACAAC.............................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................................................................................................CGCAAGTGCTCGTAGTTCT..... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12932:262873-263229 + dvi_9345 GGTCTTCATATTGGCCATCTTCGAGCTGGCG----GGCATCGTTTGGATATATGGTAAGAT----AATA-----TT-T----------------------------T-------------------------------------------------------------------------AAGGCCTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTGGAGAAA-AT---------------------GCCCTTGCTTTGGATCGCCAATGTATCTTCTCGGCGACATTGTTGCGAGTCTTCTTCTAGGCTAACATATGCATATATATGCAAAACGAGTCATTCTTTCTCGATATACCTTACCTATTTCTATTTGATCGATAACTATCGATTTGTCGAAACTCTATCAAATAATATCTATTATTATTCTAATCTTAATCTATCAAACTATCCATCTATTTTCAAGGCCTGCAAAACTTTTGCGATGATATCGAGTTCATGAGCAACAAGAAGGTT-----------------------
droMoj3 scaffold_6308:307098-307169 - TCTATCTGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCGCAGGTCTACAAAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAATTCATGAGCAACAAGAACGTT-----------------------
droGri2 scaffold_14853:2515827-2516079 - TGTCTTTATTTTGGCCATCTTTGAGCTGGTT----GGCATTGCTTGGATATATGGTAAGCT----ACAG------C-T----------------------------AAAG-TCC--------CCTTGTGAAGAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATGGTTTCTA---CTGACAGAA--TCACTTTCTTTCT---------------------T---------------------TCCTCCGCTTTGGC-------------------------------------------------ACAATATTATTATATATGCAAA------------------------------------------------------------GTATAAGCTACATCAATTCAT---------------------------TTAAATTGTCTA--TATTTTCAAGGTGTATCAAACTTTTGCGATGACATCGAATTTATGTCGAATAAGAGAGTA-----------------------
droWil2 scf2_1100000004909:1271015-1271087 + AATCTGTTTATTTGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGGTCTTCAGAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAATTCATGTGCAACAAACGTGTT-----------------------
dp5 XR_group5:324015-324111 - TGTCCTTCTTCTGACCGACATCCAGCTGACT----T----TGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTTCAGGAACCAAACGCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGGATGCCGAGTACATGTTGAACATCAAGACC-----------------------
droPer2 scaffold_58:89422-89519 + TGTCCTTCTTCTGACCGACATCCAGCTGACT----TTTGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTTCAGGAACCAAACGCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGGATGCCGAGTACATGTTGAACATCAAGACC-----------------------
droAna3 scaffold_13337:19608317-19608707 + TTCCTTGGTTTCGGCCATCTTTGAGCTGATT----GCCGTCGGATGGATTTATGGTAAGAA----GTCTTTAACCTGTTTTTAATAATTATT-GTTTTGGACGAATATAGTTCC--------CATTGAGAAGAAGAGTAGTGAATGGCTAGTAAAAATGTTTAAATCTCGAAACCCAATATTGCATTCATTTTTCTTGAGAATATAGTTTATTTACTTAGAAAGCAAGGTTGGTAAATATTTATGTTACTAGAATGGCTTTTGTGGTTATAATTTAAAGAACTAGAAAAGAGTGGAAAATGTAAGAAATGT--------------------AATCCGAATAAAT------------------------------------------TTAATTTCATAGTTTATTTTTATTT--------------ACTTTAAAGGCACCAAACGTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCTGAGTACATGCTGAACATCAAGACA-----------------------
droBip1 scf7180000396360:801073-801416 + TTCCCTGGTGTCGGCCATCTTCGAGCTGATT----GCCGTGGGATGGATTTATGGTAAGAA----GACTTTACCCT-TTTTTAATGTTTATTTATTTTTGATTAATGGCGTTCC--------AATTG-------------------------------------------AAACCCTTTTAGAGTCTCATTTTACTTGAGAGTATAGTTTGTTTTCATTAAAC--------------------------------GATTGTTGTAATTATAACTGGAA--------------------------------TTATTCGGTTATAGCTGATTGAAACCGGATGAGGCTTTTTAGAAATGAAAACAATCATAAACCTTATAGTATAGACTGAA--TAATAACTTATTTTTGTTT--------------ACTTAAAAGGCACCAAACGTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCTGAGTACATGCTGAACATCAAGACC-----------------------
droKik1 scf7180000302544:992791-992869 - ATTAAAA-----------------------------------------------------AATCC---------AT-A----------------------------T-------TTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTTAGGCCTGCAGAATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGATGATATCGAGTTCATGTGCAATCGCCGCGTC-----------------------
droFic1 scf7180000454045:414031-414135 - ACACTATCTACATATATTAG-C---ATGATT----TTAATGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAAATCA-ATCCTAAAGGACTGCAAAACTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGACGACATTGAGTTCATGTGCAATCGTCGGGTT-----------------------
droEle1 scf7180000491272:127423-127505 + GGTCTTTATTTTGGCCATTTTCGAGTTGGCT----GGCATTGTGTGGATTTATGGTGGGTGTT----TC-----------------------------------------------------CAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTTTAATAACTTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779588:345399-345504 - TCTATAAC-AGGATATATTATCCATTTGATT----TTTGTAAACCCCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CCCCTAAAGGTCTACAGAACTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAGTTTATGTGCAATCGCCGTGTT-----------------------
droBia1 scf7180000301345:194624-194687 + GGTCTTTATTCTGGCCATTTTCGAACTGGCT----GGCATTGTATGGGTTTACGGTGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACACTT-----------------------
droTak1 scf7180000412611:25189-25281 + TATTATTACATTTATTATAC---A-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTTATCT------------T-CTTTTAAAGGCACCAAACGTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGGATGCGGAATACATGCTGAACATTAAGACC-----------------------
droEug1 scf7180000409452:1402613-1402735 - TGCTCTTGTGCTGGGAATTGCTGAGCTCTAC----ACGATTGGTTGGATTTATGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAAGATATTGAGTTCATGTTGGGTCGCAAAGTGGGTCTCTATTGGAGACTCTGCTG
dm3 chr3L:9207513-9207625 + CTCCCTGGTATCGGCCATCTTTGAGCTCATT----GCCGTGGGCTGGATCTACGGTAAGCAATTA---------AT-A----------------------------T-------TAATTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTAAAGAAA-ATTTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTATAGTACTTACTCG-----------------------
droSim2 3l:8979145-8979230 + CTCCCTGGTCTCGGCCATCTTTGAGCTCATC----GCCGTGGGCTGGATCTATGGTAAGCATTAA---------AT-A----------------------------T-------TAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACATTAGATTT-----------------------
droSec2 scaffold_4:1455089-1455143 + GGTCTTCATCCTGGCCATTTTCGAACTGGCT----GGCATCGTGTGGGTTTATGGTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:3169542-3169609 + GGTCTTCATCCTGGCTATTTTCGAACTTGCT----GGCATCGTGTGGGTTTATGGTGAGTG----G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATTATA-----------------------
droEre2 scaffold_4784:4837085-4837182 - TATTTAA--TATGA----CATTGAATTGAATATATATGGTTTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCTCAGGCACCAAACGCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCCGAGTACATGCTGAACATCAAGACT-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGTCTTCATATTGGCCATCTTCGAGCTGGCG----GGCATCGTTTGGATATATGGTAAGAT----AATA-----TT-T----------------------------T-------------------------------------------------------------------------AAGGCCTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTGGAGAAA-AT---------------------GCCCTTGCTTTGGATCGCCAATGTATCTTCTCGGCGACATTGTTGCGAGTCTTCTTCTAGGCTAACATATGCATATATATGCAAAACGAGTCATTCTTTCTCGATATACCTTACCTATTTCTATTTGATCGATAACTATCGATTTGTCGAAACTCTATCAAATAATATCTATTATTATTCTAATCTTAATCTATCAAACTATCCATCTATTTTCAAGGCCTGCAAAACTTTTGCGATGATATCGAGTTCATGAGCAACAAGAAGGTT-----------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGATGATATCG..............................................1911.001000000000000000000000000000001000000000000000000000000000000000
..............................G----GGCATCGTTTGGATATATGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGAGTTCATGAGCAA.................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTATCTGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCGCAGGTCTACAAAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAATTCATGAGCAACAAGAACGTT-----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGTCTTTATTTTGGCCATCTTTGAGCTGGTT----GGCATTGCTTGGATATATGGTAAGCT----ACAG------C-T----------------------------AAAG-TCC--------CCTTGTGAAGAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATGGTTTCTA---CTGACAGAA--TCACTTTCTTTCT---------------------T---------------------TCCTCCGCTTTGGC-------------------------------------------------ACAATATTATTATATATGCAAA------------------------------------------------------------GTATAAGCTACATCAATTCAT---------------------------TTAAATTGTCTA--TATTTTCAAGGTGTATCAAACTTTTGCGATGACATCGAATTTATGTCGAATAAGAGAGTA-----------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AATCTGTTTATTTGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGGTCTTCAGAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAATTCATGTGCAACAAACGTGTT-----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATG....................................................1912.00200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAATTCATGTGCAAC................................1811.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATC...............................................2111.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAATTCATGTGC...................................2511.00100010
dp5
TGTCCTTCTTCTGACCGACATCCAGCTGACT----T----TGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTTCAGGAACCAAACGCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGGATGCCGAGTACATGTTGAACATCAAGACC-----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGTCCTTCTTCTGACCGACATCCAGCTGACT----TTTGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTTCAGGAACCAAACGCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGGATGCCGAGTACATGTTGAACATCAAGACC-----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTCCTTGGTTTCGGCCATCTTTGAGCTGATT----GCCGTCGGATGGATTTATGGTAAGAA----GTCTTTAACCTGTTTTTAATAATTATT-GTTTTGGACGAATATAGTTCC--------CATTGAGAAGAAGAGTAGTGAATGGCTAGTAAAAATGTTTAAATCTCGAAACCCAATATTGCATTCATTTTTCTTGAGAATATAGTTTATTTACTTAGAAAGCAAGGTTGGTAAATATTTATGTTACTAGAATGGCTTTTGTGGTTATAATTTAAAGAACTAGAAAAGAGTGGAAAATGTAAGAAATGT--------------------AATCCGAATAAAT------------------------------------------TTAATTTCATAGTTTATTTTTATTT--------------ACTTTAAAGGCACCAAACGTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCTGAGTACATGCTGAACATCAAGACA-----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................TTTGAGCTGATT----GCCGTCGGATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
TTCCCTGGTGTCGGCCATCTTCGAGCTGATT----GCCGTGGGATGGATTTATGGTAAGAA----GACTTTACCCT-TTTTTAATGTTTATTTATTTTTGATTAATGGCGTTCC--------AATTG-------------------------------------------AAACCCTTTTAGAGTCTCATTTTACTTGAGAGTATAGTTTGTTTTCATTAAAC--------------------------------GATTGTTGTAATTATAACTGGAA--------------------------------TTATTCGGTTATAGCTGATTGAAACCGGATGAGGCTTTTTAGAAATGAAAACAATCATAAACCTTATAGTATAGACTGAA--TAATAACTTATTTTTGTTT--------------ACTTAAAAGGCACCAAACGTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCTGAGTACATGCTGAACATCAAGACC-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATTAAAA-----------------------------------------------------AATCC---------AT-A----------------------------T-------TTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTTAGGCCTGCAGAATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGATGATATCGAGTTCATGTGCAATCGCCGCGTC-----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACACTATCTACATATATTAG-C---ATGATT----TTAATGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAAATCA-ATCCTAAAGGACTGCAAAACTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGACGACATTGAGTTCATGTGCAATCGTCGGGTT-----------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGTCTTTATTTTGGCCATTTTCGAGTTGGCT----GGCATTGTGTGGATTTATGGTGGGTGTT----TC-----------------------------------------------------CAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTTTAATAACTTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCTATAAC-AGGATATATTATCCATTTGATT----TTTGTAAACCCCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CCCCTAAAGGTCTACAGAACTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGATGACATCGAGTTTATGTGCAATCGCCGTGTT-----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGTCTTTATTCTGGCCATTTTCGAACTGGCT----GGCATTGTATGGGTTTACGGTGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACACTT-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TATTATTACATTTATTATAC---A-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTTATCT------------T-CTTTTAAAGGCACCAAACGTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGGATGCGGAATACATGCTGAACATTAAGACC-----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGCTCTTGTGCTGGGAATTGCTGAGCTCTAC----ACGATTGGTTGGATTTATGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAAGATATTGAGTTCATGTTGGGTCGCAAAGTGGGTCTCTATTGGAGACTCTGCTGSizeHit CountTotal NormTotal
No Reads
dm3
CTCCCTGGTATCGGCCATCTTTGAGCTCATT----GCCGTGGGCTGGATCTACGGTAAGCAATTA---------AT-A----------------------------T-------TAATTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTAAAGAAA-ATTTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTATAGTACTTACTCG-----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.TCCCTGGTATCGGCCATCTTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251118.0011800000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000001001000010020000000000000000000000000000000000000000001000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000040100001400000000000000001019500000
.TCCCTGGTATCGGCCATCTTTGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000
CTCCCTGGTATCGGCCATCTTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000
.TCCCTGGTATCGGCCATCTTTGAGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................CCGTGGGCTGGATCTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
..CCCTGGTATCGGCCATCTTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
.............................TT----GCCGTGGGCTGGATCTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CATCTTTGAGCTCATT----GCCGTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....TGGTATCGGCCATCTTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CCATCTTTGAGCTCATT----GCCGTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..........................TCATT----GCCGTGGGCTGGATCTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
......................GAGCTCATT----GCCGTGGGCTGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCCCTGGTATCGGCCATCTTTGAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................CTTTGAGCTCATT----GCCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCCTGGTATCGGCCATCTTTGAGCTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............GCCATCTTTGAGCTCATT----GCCGTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..CCCTGGTATCGGCCATCTTTGAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................GCCGTGGGCTGGATCTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TATCGGCCATCTTTGAGCTCATT----GCCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................TTGAGCTCATT----GCCGTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCTGGTATCGGCCATCTTTGAGCTCATT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..CCCTGGTATCGGCCATCTTTGAGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..CCCTGGTATCGGCCATCTTTGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........TATCGGCCATCTTTGAGCTCATT----GCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTCATT----GCCGTGGGCTGGATCTACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CATT----GCCGTGGGCTGGATCTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGTATCGGCCATCTTTGAGCTCATT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCTTTGAGCTCATT----GCCGTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATT----GCCGTGGGCTGGATCTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCCTGGTATCGGCCATCTTTGAGCTCATT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.TCCCTGGTATCGGCCATCTTTGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................TCATT----GCCGTGGGCTGGATCTACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCTTTGAGCTCATT----GCCGTGGGCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTGAGCTCATT----GCCGTGGGCTGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................TTTGAGCTCATT----GCCGTGGGCTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCTGGTATCGGCCATCTTTGAGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....TGGTATCGGCCATCTTTGAGCTCATT----GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................TCTTTGAGCTCATT----GCCGTGGGCTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATT----GCCGTGGGCTGGATCTACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCATT----GCCGTGGGCTGGATCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...CCTGGTATCGGCCATCTTTGAGCTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....CTGGTATCGGCCATCTTTGAGCTCATT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
CTCCCTGGTATCGGCCATCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGAGCTCATT----GCCGTGGGCTGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCTTTGAGCTCATT----GCCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTCCCTGGTCTCGGCCATCTTTGAGCTCATC----GCCGTGGGCTGGATCTATGGTAAGCATTAA---------AT-A----------------------------T-------TAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACATTAGATTT-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.TCCCTGGTCTCGGCCATCTTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
..........TCGGCCATCTTTGAGCTCATC----GCCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
.....TGGTCTCGGCCATCTTTGAGCTCATC----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
.....TGGTCTCGGCCATCTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
...................................GCCGTGGGCTGGATCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.....TGGTCTCGGCCATCTTTGAGCTCATC----GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
droSec2
GGTCTTCATCCTGGCCATTTTCGAACTGGCT----GGCATCGTGTGGGTTTATGGTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................GCT----GGCATCGTGTGGGTTTATGGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
..............................T----GGCATCGTGTGGGTTTATGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
......................................ATCGTGTGGGTTTATGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
droYak3
GGTCTTCATCCTGGCTATTTTCGAACTTGCT----GGCATCGTGTGGGTTTATGGTGAGTG----G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATTATA-----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................CGAACTTGCT----GGCATCGTGTGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000000000
................ATTTTCGAACTTGCT----GGCATCGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
................ATTTTCGAACTTGCT----GGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEre2
TATTTAA--TATGA----CATTGAATTGAATATATATGGTTTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCTCAGGCACCAAACGCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCCGAGTACATGCTGAACATCAAGACT-----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAAGATGCCGAGTACATGC.....................................2511.0011000000

Generated: 05/16/2015 at 11:27 PM