ID:

dvi_9292

 Coordinate:

scaffold_12928:7654226-7654376 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.6 -18.6 -18.1

Flybase annnotation

CDS [Dvir\GJ16356-cds]; exon [dvir_GLEANR_16863:5]; intron [Dvir\GJ16356-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
mature
  1. scaffold_12100:70571-70596 +
  2. scaffold_12723:674962-674987 -
  3. scaffold_12855:684169-684194 +
  4. scaffold_12876:36334-36359 +
  5. scaffold_12928:4555875-4555900 -
  6. dvi_9292  scaffold_12928:7654316-7654341 -
  7. scaffold_12939:41326-41351 -
  8. scaffold_12939:86549-86574 -
  9. scaffold_12954:909875-909900 +
  10. scaffold_12956:69977-70002 +
  11. scaffold_12958:3037806-3037831 -
  12. scaffold_12967:592672-592697 +
  13. scaffold_13047:1498419-1498444 -
  14. scaffold_13049:12102267-12102292 -
  15. scaffold_13049:12105612-12105637 +
  16. scaffold_13049:12107046-12107071 +
  17. scaffold_13050:2170642-2170667 -
  18. scaffold_13324:1325149-1325174 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTGTGCATACGGACAGACTGACATACGGGCAGCAGGGCAGACGGACGGAAGGACAGACGGACTTGGCTAGATCGAATTGGCTATTGATGCTGATCAATAATATATATACATTATGAGTTATTTAATATTTAAACATTTGTACAAATTCAGTACAATACCCATTTTACCCATAGACTCACACCAAATTCTTACATTACAGGCTACGGCGGCATTTCGCCCCGCACCCAGTGGGGCCGCGTAGCCGCCCTT
**************************************************(((((.....((....(((((....(((.(((.(((((.((((((..((((((.((((.....)))).))))))........................))))))))))).))).))).....))).))....))...))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 M047
female body
 SRR060670
9_testes_total
 SRR060678
9x140_testes_total
 SRR060656
9x160_ovaries_total
............................................................................................................................................................................TAGACTCACTCCAGGTTCTT........................................................... 20 3 1 1.00 1 1 0 0 0 0
.......................................................................................................................TTATTTAATACCTAAACATTTCT............................................................................................................. 23 3 3 0.33 1 0 0 1 0 0
.......................................CAGACGGACGGAAGGACAGA................................................................................................................................................................................................ 20 0 4 0.25 1 0 0 0 1 0
...................CTGACATACGGGGAGTTGGG.................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0
..................................................................GTCTAGATCGAATTGGCTATT.................................................................................................................................................................... 21 1 7 0.14 1 0 0 0 0 1
..............................................ACGGAAGGATAGCGGGACTT......................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
..............................................ACGGAAGGATAGCGGGACT.......................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0
.....................................................................................TTGATGCTGATCAATAATATATATAC............................................................................................................................................ 26 0 18 0.06 1 0 1 0 0 0

Anti-sense strand reads

AAAACACGTATGCCTGTCTGACTGTATGCCCGTCGTCCCGTCTGCCTGCCTTCCTGTCTGCCTGAACCGATCTAGCTTAACCGATAACTACGACTAGTTATTATATATATGTAATACTCAATAAATTATAAATTTGTAAACATGTTTAAGTCATGTTATGGGTAAAATGGGTATCTGAGTGTGGTTTAAGAATGTAATGTCCGATGCCGCCGTAAAGCGGGGCGTGGGTCACCCCGGCGCATCGGCGGGAA
**************************************************(((((.....((....(((((....(((.(((.(((((.((((((..((((((.((((.....)))).))))))........................))))))))))).))).))).....))).))....))...))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 SRR060658
140_ovaries_total
 M061
embryo
 M027
male body		 M047
female body
 SRR060676
9xArg_ovaries_total
...........................................................................................................................AAGTATAAATTTGCAAACATGTATA....................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
....................................................CCTGTCTGCCTGAACCGATC................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0
........................................................TCTGCCTGAACCGATCTAGC............................................................................................................................................................................... 20 0 12 0.08 1 0 0 1 0 0 0
........................................................................................................ATTTATGTGATACTCAAT................................................................................................................................. 18 2 14 0.07 1 0 0 0 1 0 0
..............................................................................AACCGATAACTACGACTAGT......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1
......................................................................................ACTACGACTAGTTATTATA.................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:7654176-7654426 - dvi_9292 TTTTGTGCATACGG----ACAGACTGACATACGG---------G--------CAGCAGGGCAGACGGACGGAAGGACAGACGGACTTGGCTAGATCGAATTGGCTATTGATGCTGATCAATAATATATATACATTATGAGTTATTTAATATTT-----------------A------AACA-------TTTGTACAAATTCAGTACAA-----T-ACCCAT----TTTA-----CCCA--TAGACTCAC-------------ACC-------------AAATTC------------T----------TACATTACAG-GCTACGGCGGCATTT-----CGCCCCGCACC--------------CA----GTGGGGCCGCGTAGCCGC---CCTT
droMoj3 scaffold_6500:32138527-32138755 + TTTTGCTCATACG---------------------------------------------GATGGACGGACGGACGGACAGACGGACAGGGCTATATCGACTCAGCTC---GTCCTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTAC--A------TACT-------TTTC-ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTAT---------------AAAAATTGC----A---------ATTT-----------AC-AAA-------------AAAGTGTTTCCGCGGGATTT-----GAA---------------------------------CTCGCAC----------CCA
droGri2 scaffold_15110:15836866-15837070 - CA-------------------------------T---------A--------CAGACGGATGGACGAAGGGACGGACAGACCTACATGGCTATATCAACACGGCTTTTGATCCTGTTCAAGAATATATATACTTTATGGGATCGGAGATGCTTCCCTCTGCCTGTTAC--A------TACG-------TTAGCACAAAACTATTAAACCATTTTTACCCATTTCCAATGAGTTCATGGCAT---------------GACAT---------------------------------------------------------------------------------------------------------------GGGCCACGCCCACTTTTCACCC
droWil2 scf2_1100000004967:3759952-3760174 - CG-----------G----ACAGTCGGACAGACGG---------A--------CAGACGGACGGACGGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATATATAATTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTAC--A------TACA-------TTTTGGCGACTTTAATATACCATTTC-ACCC------TATGGGTGTATGGTAT---------------AAGAA--------------------TACTTGCACATTTG---------GCT---------------CGATGGCATTT-----T-----------------------------------------------------GC
dp5 Unknown_group_65:22765-23002 + AC--G--------G------------ACAGACGG---------A--------CGGACGGACGGACGGACAGACGGACAGACAAACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCAAAAACGATACCTTCTGGACGTTAC--A------CACATCCACTTTTATCACAAATCTAATATACCCCAAT-ACTCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CAGCT-----CACTCCGCAGC--------------CTGCAAGTTGAGCCGCACAGATGC---CGTA
droPer2 scaffold_1975:1101-1338 + AC--G--------G------------ACAGACGG---------A--------CGGACGGACGGACGGACAGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATGAAGAATATATATACTTTATGGGGTCAAAAACGATTCCTTCTGGACGTTAC--A------CACATCCACTTTTACCACAAATCTAATATACCCCAAT-ACTCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CAGCT-----CACTCCGCAGC--------------CTGCAAGTTGAGCCGCACAGATGC---CGTA
droAna3 scaffold_13280:1084213-1084419 + TTGCGTAGAAACAG----ACAGACGGACAGACGG---------A--------CAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGC--A------CACT-------TTTGACCAAAATTATAATACCCTCT-------------GCA-----AGGGTAT---------------AATTATTTA-------------AGATTC------------T----------T-----ACA------------------------------------------------------------------------------
droBip1 scf7180000394443:3757-3972 + GC--GTAGAAACGG----ACA----GACAGACGG---------A--------CAGGCAGACGGACAGACAGACGGACAGACGGAAATGATTATATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGC--A------CACT-------TTCGGACAAAATTATAATACCCTCT-------------GCA-----AGGGTATAAAAACAC-----------------------------------ACCTACTTTTCC-AAA-------------AAAG-ACTATGG--------------------------------------------------------------------C
droKik1 scf7180000302576:19783-19949 + AT--G--------G----ACAGACGGACAGATGG---------A--------CAGATAGACAGATGGACAGACGGACAGCCGGACATAGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACATCTCCA------------------------------------A---------------------------------GCA-----AGTTTATAAAAATGTATAATAAA--CA--------------------T---TGTAC------T----------T---ATAG------------------------------------------------------------------------------A
droFic1 scf7180000454116:67137-67378 - TT-----AAAACTG----AAA--------GACTA---------GTTTTCGCGGAAACGGACAGACGGACAGACGTACAGACG--------TATTCTGATTCTACTCGTGATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGC--A------AACA-------TCTGACTGAAATTATAATACCCTTTT-GCTC------TGCA-----AGGTTATAAAAATCA------------------------------ACTTT---TA--------AATATTCACTC---TTACA------------CACTTTGGGGGACCCCGTGGC--------------CCGG----GGGG-----------------CC
droEle1 scf7180000491255:2210315-2210507 + TG-----CAT----------------ATAAACGG---------A--------CGGACAGACGGACAGACGGACGGACAGACGGACATGGCTAGATCGACTCGTCTAGTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGC--A------AACT-------TCTGACTGAAATTATAATACCCTCT-------------GCA-----AGGGTATAAAAACG------------------------------AAATTC------------T----------TGCATTACA------------------------------------------------------------------------------
droRho1 scf7180000769730:1848-2104 - CAGCGTTCATACGGACAGACAGACAGACAGACAG---------A--------CGGACAGACAGACGGACAGACGGACAGACGGACATGGCTATATCGACTCGACTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTAC--A------TACT-------TTTGCACGAATACAATATACCCTTTT-ACTC------TACGAGTAACGGGTATAAAAATAG------------------------------GCCGA---AT--------AAGAATAACT--------------ACG----CACC-------------------------------TC----GA-GGATCTCGTCGTCGT---CTTC
droBia1 scf7180000301518:522589-522746 + GT----TCCTACGG------------ACGGACGG---------A--------CAGACCGACAGACGGACAGACGTACAGGCGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATGAATAATAAATATACTTTATGTGGTCGGAAACTCTTTCT--------------------------------TTCCGACGAATCTAGTATACCCTTTT-ACTC------TTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414525:12405-12663 + CAGCGTTCATACAG----ACAGACAGACGGACAG---------A--------CGGACAGACAGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATATATAGTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTAC--A------TACT-------TTTGCACGAATCTAATATACCCTTTT-ACTC------TACGAGTAACGGGTAT---------------AACCATAAGAGCTAGAGCAGCCAAATTT------------T----------T----------------------------------TCACAGT--------------ATTCCATTGGGG--GCGTAGGCG-----CCC
droEug1 scf7180000408823:14453-14679 - TAGCGTTCATACGGACGGACGGACTGACGGACGG---------A--------CGGACGGACGGACGGACGGACGGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAATATATATACTTTATAGGGTCGTAAAACCTTCCTTCTATCTGTTAG--A------TACT-------TTTCAACGAATCTAGTATACCCTTTT-ACTC------TACGAGTAACGGGTAT---------------AAATATGTT----A---------GA------------------------------GTACAG-ACGACAG---------------------------------------------------------------------
dm3 chr3L:24196545-24196701 - AC--T--------T------------GTATTAGG---------A--------CAGACGGGCAGTCGGTCAGACGGACAAACGGACATAGCTAGATCGATTCGGCTATTGATCCTGATCAAGAATATATAGAAGT--------CTAT--------------------ATATATATAGTAGCA-------TATGT---------------------------------GCC-----ATAGTATAAGACCAC-----------------------------------ATATAC------T----------T-----ACA---------------------------------CACACAC------------------------------------AC
droSim2 2l:21351540-21351711 - C---------------------------ATATGG---------C--------TATAAGGACAGACGGACGGACCGACAGACAGACATGGCCAGATCGACTCGGTTATTGATCCTGATCAAGAATATAAG-------TGTGGTCGGAAACGTTTCCTTCTGCCTGTTAC--C------TACT-------TGTCAACGAATCTAGTACACCCTTTT-ACTC------T--------------TAAAAACCC-----------------------------------ATTAACTT----------------------------------------------------------------------------------------------------TT
droSec2 scaffold_55:144976-145158 + TTTTTTTCATATCG----ATAGAAAT------GTACAAGACTAA--------T-AAAAGACAGACGAACAGACAGGCAGACGGACATGTCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATT-GGTCGGAAACGCTTCCTTCAGCCTGTTAT--A------TACT-------TTTCAACGAATTTGGTATACCATTTT-ACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:399927-400190 + AC--G--------GACAGACGGACAGACGGACAG---------A--------CGGACAGACGGACAGACGGACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGTCTGTTAC--A------TACT-------TTTCAACGAATCTAGTATACCCTTTT-ACTC------TACGAGTAACGGGTAT---------------AATTAGT------------------CT-----------AC-TGC-------------AAAGTTTTGGGGCTGCATGA-----C--CCAACA--CACGGAAACGGATG---------GAGTCGCTTAGC--C---CCTT
droEre2 scaffold_4845:2515660-2515853 - CGCCGTTCATACGG----------------ACGG---------A--------CAGACAAACGGACAGACGGACGGACAGACGAACATGACCAGATCGACTCGGCTATTGATCCTGATCAAGAAAATATACACTTTATA-------------TTCCTTCTGCCTGTTAC--T------TAGT-------TTTCAACGAATCTAGTATACCCTTTT-ACTC------TTCGAGTAACGGGTAT---------------AACTAG-------------------------------------------CT--------------ACGATCGCACC------------------------------------------------------------TC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTTGTGCATACGG----ACAGACTGACATACGG---------G--------CAGCAGGGCAGACGGACGGAAGGACAGACGGACTTGGCTAGATCGAATTGGCTATTGATGCTGATCAATAATATATATACATTATGAGTTATTTAATATTT-----------------A------AACA-------TTTGTACAAATTCAGTACAA-----T-ACCCAT----TTTA-----CCCA--TAGACTCAC-------------ACC-------------AAATTC------------T----------TACATTACAG-GCTACGGCGGCATTT-----CGCCCCGCACC--------------CA----GTGGGGCCGCGTAGCCGC---CCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................CAGACGGACGGAAGGACAGA..........................................................................................................................................................................................................................................................................................................................2040.251000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................TTGATGCTGATCAATAATATATATAC......................................................................................................................................................................................................................................................................26180.061001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTTTGCTCATACG---------------------------------------------GATGGACGGACGGACGGACAGACGGACAGGGCTATATCGACTCAGCTC---GTCCTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTAC--A------TACT-------TTTC-ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTAT---------------AAAAATTGC----A---------ATTT-----------AC-AAA-------------AAAGTGTTTCCGCGGGATTT-----GAA---------------------------------CTCGCAC----------CCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................ATATACTTTATGGGGTCTGCG.......................................................................................................................................................................................................................................................21200.204400000
........................................................................................................................................................................................................................................................................C----A---------ATTT-----------AC-AAA-------------AAAGTGTTTCCGCGG..................................................................2660.171100000
.............................................................................................................................................TCTGCGATGATTCCTTCTGCCTGT.....................................................................................................................................................................................................................................24200.153300000
..........................................................................................................................................................................A------TACT-------TTTC-ACAAAACCATTATACCC........................................................................................................................................................................................26200.102200000
...............................................................................ACGGACAGGGCTATATCGACT......................................................................................................................................................................................................................................................................................................21200.051000100
...............................................................................................................................................................GCCTGTTAC--A------TACT-------TTTC-ACAAAACCA................................................................................................................................................................................................27200.051100000
......................................................................................................................................................................................................................................................................................................................................GGGATTT-----GAA---------------------------------CTCGCAC----------CCA20200.051100000
................................................................................................................................ATACTTTATGGGGTCTGCGATGATT.................................................................................................................................................................................................................................................25200.051100000
.......................................................................................................................................................TTCCTTCTGCCTGTTAC--A------TACT-------T.............................................................................................................................................................................................................23200.051000010
..................................................................................................................................................................................................................................................................................................................................CCGCGGGATTT-----GAA---------------------------------CTCGCAC----------CCA24200.051100000
..................................................................................................................................ACTTTATGGGGTCTGCGATGA...................................................................................................................................................................................................................................................21200.051010000
....................................................................................................................................TTTATGGGGTCTGCGATGATTC................................................................................................................................................................................................................................................22200.051010000
droGri2
CA-------------------------------T---------A--------CAGACGGATGGACGAAGGGACGGACAGACCTACATGGCTATATCAACACGGCTTTTGATCCTGTTCAAGAATATATATACTTTATGGGATCGGAGATGCTTCCCTCTGCCTGTTAC--A------TACG-------TTAGCACAAAACTATTAAACCATTTTTACCCATTTCCAATGAGTTCATGGCAT---------------GACAT---------------------------------------------------------------------------------------------------------------GGGCCACGCCCACTTTTCACCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CG-----------G----ACAGTCGGACAGACGG---------A--------CAGACGGACGGACGGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATATATAATTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTAC--A------TACA-------TTTTGGCGACTTTAATATACCATTTC-ACCC------TATGGGTGTATGGTAT---------------AAGAA--------------------TACTTGCACATTTG---------GCT---------------CGATGGCATTT-----T-----------------------------------------------------GCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................CAGACGGACATGGCTAGATCG.........................................................................................................................................................................................................................................................................................................21200.25505000
....................................................................................................................................................................................................................................................................................................TTG---------GCT---------------CGATGGCATTT-----T-----------------------------------------------------GC20140.21300111
............................................................................................................................................................................................TTTTGGCGACTTTAATATACC.........................................................................................................................................................................................21200.20440000
...................................................................................................................................................................................................................................................................................................TTTG---------GCT---------------CGATGGCATTT-----T-----------------------------------------------------GC21140.14200020
....................................................................................................................................................................................................................................................................A--------------------TACTTGCACATTTG---------GCT---------------CGA.....................................................................21170.12202000
..................................................................................................................................................................TGTTAC--A------TACA-------TTTTGGCGACTTT.................................................................................................................................................................................................24200.10200020
..................................................................................................................................................................................................................................................................................................ATTTG---------GCT---------------CGATGGCATTT-----T-----------------------------------------------------GC22140.07100001
...............................................................................................................................................................................................................................................................................................CACATTTG---------GCT---------------CGATGGCATT..............................................................21160.06110000
....................................................................................................................................................................................................................................................................A--------------------TACTTGCACATTTG---------GCT---------------CG......................................................................20180.06101000
..............................................................................................................................................................................................................................................................................................GCACATTTG---------GCT---------------CGATGGCAC...............................................................21180.06101000
...................................................................................................................................................................................................................................................................AA--------------------TACTTGCACATTTG---------GCT---------------CG......................................................................21180.06101000
..............................................................................................................................................................................................................................................................................................GCACATTTG---------GCT---------------CGATGGC.................................................................19190.05101000
................................................................................................GACTCGGTTGTTGATCCTGA......................................................................................................................................................................................................................................................................................20200.05101000
.............................................................................................ATCGACTCGGTTGTTGATCC.........................................................................................................................................................................................................................................................................................20200.05100001
...........................................................................................................................................................................................................TATACCATTTC-ACCC------TATGGG...................................................................................................................................................................21200.05101000
.................................................................................................................................................................CTGTTAC--A------TACA-------TTTTGGCGAC....................................................................................................................................................................................................22200.05100010
......................................................................................................................................TGTGGGGTCGGAGATGCTTCCT..............................................................................................................................................................................................................................................22200.05100010
....................................................CAGACGGACGGACGGACGGA..................................................................................................................................................................................................................................................................................................................................20200.05100100
dp5
AC--G--------G------------ACAGACGG---------A--------CGGACGGACGGACGGACAGACGGACAGACAAACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCAAAAACGATACCTTCTGGACGTTAC--A------CACATCCACTTTTATCACAAATCTAATATACCCCAAT-ACTCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CAGCT-----CACTCCGCAGC--------------CTGCAAGTTGAGCCGCACAGATGC---CGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................TTATCACAAATCTAATATACCCCAAT-AC.................................................................................................................................................................................2855.202600260000000
.C--G--------G------------ACAGACGG---------A--------CGGACGGA..............................................................................................................................................................................................................................................................................................................................................20204.759500000009500
............................................................CGGACGGACAGACGGACAGACAA.......................................................................................................................................................................................................................................................................................................................2323.0060000000240
.........................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTAT---------------AAA.......................................................................................................................................23202.304604600000000
......................................................GACGGACGGACGGACAGACGGACA............................................................................................................................................................................................................................................................................................................................24201.803600000003600
........................................................CGGACGGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................20201.603200000003200
..........................................................GACGGACGGACAGACGGAC.............................................................................................................................................................................................................................................................................................................................19201.553100000000310
...........................................................ACGGACGGACAGACGGACAGA..........................................................................................................................................................................................................................................................................................................................21201.352700000000270
...............................CGG---------A--------CGGACGGACGGACGGAC.....................................................................................................................................................................................................................................................................................................................................21201.102200000002200
........................................................CGGACGGACGGACAGACGGACAGACAA.......................................................................................................................................................................................................................................................................................................................2721.0020000000020
....................................................................................................CGGCTATTGATGCTGATCAAG.................................................................................................................................................................................................................................................................................21200.901801800000000
.........................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------..................................................................25200.851700170000000
......................................................GACGGACGGACGGACAGACGGAC.............................................................................................................................................................................................................................................................................................................................23200.851700000000170
............................................................................................................................................................................................TTATCACAAATCTAATATACCCCAAT-A..................................................................................................................................................................................2750.8040040000000
..........................................................GACGGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................18200.701402000000120
............................................................................................................................................................................................TTATCACAAATCTAATATACCCCAAT-...................................................................................................................................................................................2650.6030030000000
............................AGACGG---------A--------CGGACGGACGGAC.........................................................................................................................................................................................................................................................................................................................................20200.501000000001000
..........................................................GACGGACGGACAGACGGACAGACAA.......................................................................................................................................................................................................................................................................................................................2520.5010000000010
.........................................................GGACGGACGGACAGACGGACAGACAA.......................................................................................................................................................................................................................................................................................................................2620.5010000000001
...............................................................ACGGACAGACGGACAGACAAA......................................................................................................................................................................................................................................................................................................................2150.4020000000200
.........................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CA................................................................27200.3570000000070
............................................................................................................................................................................................TTATCACAAATCTAATATACCCC.......................................................................................................................................................................................2360.3320110000000
....................................................................CAGACGGACAGACAAACATGGCTCAATC..........................................................................................................................................................................................................................................................................................................2830.3310010000000
........................................................CGGACGGACGGACAGACGGACA............................................................................................................................................................................................................................................................................................................................22200.3060000000600
..............................................................................................................TGCTGATCAAGAATATATATACTTT...................................................................................................................................................................................................................................................................25200.3060060000000
.....................................................................AGACGGACAGACAAACATGGC................................................................................................................................................................................................................................................................................................................2170.2920000000200
................................................................CGGACAGACGGACAGACAAACATGGC................................................................................................................................................................................................................................................................................................................2640.2510000000010
.........................................................GGACGGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................18200.2550000000050
............................................................................................................................................................TCTGGACGTTAC--A------CACATC...................................................................................................................................................................................................................19200.2555000000000
.......................................................ACGGACGGACGGACAGACGGAC.............................................................................................................................................................................................................................................................................................................................22200.2040000000040
.................................G---------A--------CGGACGGACGGACGGACAGACG................................................................................................................................................................................................................................................................................................................................24200.2040000000040
.............................................................................................................ATGCTGATCAAGAATATATAT........................................................................................................................................................................................................................................................................21200.2040400000000
................................................................................................................CTGATCAAGAATATATATACTT....................................................................................................................................................................................................................................................................22200.2040400000000
............................................................................................................................................................................................TTATCACAAATCTAATATACCCCAAT-ACT................................................................................................................................................................................2950.2010010000000
..............................................................................GACAAACATGGCTCAATCGACTCGG...................................................................................................................................................................................................................................................................................................2560.1710100000000
............................................................................................................................................................................................TTATCACAAATCTAATATACCCCAAT-ACA................................................................................................................................................................................2960.1710010000000
...........................................................................................................................................................................................TTTATCACAAATCTAATATACCCA.......................................................................................................................................................................................24130.1520000000020
......................................................GACGGACGGACGGACAGACGGACAG...........................................................................................................................................................................................................................................................................................................................25200.1530200000001
.....................................................GGACGGACGGACGGACAGACG................................................................................................................................................................................................................................................................................................................................21200.1530300000000
..................................................................................................................................................................................................................................TTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CA................................................................22200.1530200000010
......................................................................................TGGCTCAATCGACTCGGCTATTG.............................................................................................................................................................................................................................................................................................23200.1530000000300
.........................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTAT---------------AAAA......................................................................................................................................24200.1530000000300
........................................................CGGACGGACGGACAGACGGACAGACA........................................................................................................................................................................................................................................................................................................................26200.1530000000201
.........................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------C.................................................................26200.1530000000210
...................................................................................ACATGGCTCAATCGACTCGGCTATTGA............................................................................................................................................................................................................................................................................................27200.1530000000300
..................................................................................................................................................................................................................................TTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CAGC..............................................................2470.1410100000000
..........................................................................GACAGACAAACATGGCTCAATCGACT......................................................................................................................................................................................................................................................................................................2680.1310100000000
....................................................................................................................................................................................................................AT-ACTCAT----TTTGAGTATCGG.............................................................................................................................................................20200.1020200000000
...........................................A--------CGGACGGACGGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................24200.1020000000020
.........................................................GGACGGACGGACAGACGGACAGAC.........................................................................................................................................................................................................................................................................................................................24200.1020000000020
....................................................CGGACGGACGGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................23200.1020000000200
............................................................................................................................................................................................................................T----TTTGAGTATCGGGTAT---------------AAAA......................................................................................................................................21200.1020200000000
..........................................................................................................................ATATATATACTTTATGGGGTC...........................................................................................................................................................................................................................................................21200.1020000200000
...........................CAGACGG---------A--------CGGACGGACGGAC.........................................................................................................................................................................................................................................................................................................................................21200.1020100000001
....................................................................................................................................................................................................AATCTAATATACCCCAAT-ACTC...............................................................................................................................................................................22200.1020000000020
............................................................................................................................................................................................................................T----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------C.................................................................23200.1020200000000
.................................G---------A--------CGGACGGACGGACGGACAGAC.................................................................................................................................................................................................................................................................................................................................23200.1020000000200
......................................................GACGGACGGACGGACAGACGGACAGAA.........................................................................................................................................................................................................................................................................................................................27200.1020000000200
................................................................................................................CTGATCAAGAATATATATACTTTA..................................................................................................................................................................................................................................................................24200.1020200000000
................................GG---------A--------CGGACGGACGGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................26200.1020000000200
..........................ACAGACGG---------A--------CGGACGGACGGAC.........................................................................................................................................................................................................................................................................................................................................22200.1020000000020
............................................................................................................................................................................................................................................................................................................................................T-----CACTCCGCAGC--------------CTGCAAGTTGAGC..................25100.1010100000000
..........................................................................................................................................................................................................................CAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CA................................................................26200.1020200000000
............................................................................................AATCGACTCGGCTATTGATGC.........................................................................................................................................................................................................................................................................................21200.1020000020000
.................................................................................................................................................AAACGATACCTTCTGGACGTTAC--A------CAC......................................................................................................................................................................................................................27120.0810100000000
.......................................................................................................................................................TACCTTCTGGACGTTAC--A------CA.......................................................................................................................................................................................................................20140.0710100000000
......................................................................................................................................................................................................................................................................................................................................................CCGCAGC--------------CTGCAAGTTGAGCCGCAC.............25150.0710100000000
......................................................................................................................................................................................................................................................................................................................................................CCGCAGC--------------CTGCAAGTTGAGCCGC...............23150.0710100000000
............................................................................................................................ATATATACTTTATGGGGTCA..........................................................................................................................................................................................................................................................20160.0610100000000
.............................................................................................ATCGACTCGGCTATTGATGCTGA......................................................................................................................................................................................................................................................................................23200.0510100000000
.....................................................GGACGGACGGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................23200.0510000000001
..........................................................GACGGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................17200.0510000000100
.C--G--------G------------ACAGACGG---------A--------CGGACGGACGGACG........................................................................................................................................................................................................................................................................................................................................26200.0510000000010
...............................CGG---------A--------CGGACGGACGGACGGACA....................................................................................................................................................................................................................................................................................................................................22200.0510000000010
.....................................................GGACGGACGGACGGACAGACGGACAGAC.........................................................................................................................................................................................................................................................................................................................28200.0510000000001
....................................................CGGACGGACGGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................24200.0510000000001
.....................................................................................................................................................................................................................T-ACTCAT----TTTGAGTATCGGGTAT---------------AAA.......................................................................................................................................26200.0510010000000
............................AGACGG---------A--------CGGACGGACGGACGGACAG...................................................................................................................................................................................................................................................................................................................................26200.0510000000010
.............G------------ACAGACGG---------A--------CGGACGGACG............................................................................................................................................................................................................................................................................................................................................20200.0510001000000
.........................................................GGACGGACGGACAGACGGACA............................................................................................................................................................................................................................................................................................................................21200.0510000001000
AC--G--------G------------ACAGACGG---------A--------CGGACGGACGGA..........................................................................................................................................................................................................................................................................................................................................25200.0510000000001
..........................ACAGACGG---------A--------CGGACGGACGGACG........................................................................................................................................................................................................................................................................................................................................23200.0510000000010
.....................................................................................ATGGCTCAATCGACTCGGCT.................................................................................................................................................................................................................................................................................................20200.0510000001000
...........................CAGACGG---------A--------CGGACGGACGGACG........................................................................................................................................................................................................................................................................................................................................22200.0510000000100
....................................................CGGACGGACGGACGGACAGACGGACAG...........................................................................................................................................................................................................................................................................................................................27200.0510000000010
.................................................................................................................................................................................................................................TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CAG...............................................................24200.0510100000000
.................................................................................................................................................................................................................................TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------..................................................................21200.0510000000010
............................................................CGGACGGACAGACGGACAG...........................................................................................................................................................................................................................................................................................................................19200.0510100000000
...................................................................................ACATGGCTCAATCGACTCGGC..................................................................................................................................................................................................................................................................................................21200.0510000001000
...........................................A--------CGGACGGACGGACGGACAG...................................................................................................................................................................................................................................................................................................................................20200.0510000000010
...................................................................................................................................................................................................................................................................................................................................................................................TGAGCCGCACAGATGC---CG..18200.0510000000010
.......................................................ACGGACGGACGGACAGACGGACAGACA........................................................................................................................................................................................................................................................................................................................27200.0510100000000
........................................................................................................................................................................................................TAATATACCCCAAT-ACTCAT----TTT......................................................................................................................................................................23200.0510100000000
..........................ACAGACGG---------A--------CGGACGGACGG...........................................................................................................................................................................................................................................................................................................................................20200.0510000001000
................................GG---------A--------CGGACGGACGGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................27200.0510000000100
.....................................................GGACGGACGGACGGACAGAC.................................................................................................................................................................................................................................................................................................................................20200.0510000000100
......................................................GACGGACGGACGGACAGACG................................................................................................................................................................................................................................................................................................................................20200.0510000001000
..............................ACGG---------A--------CGGACGGACGGACG........................................................................................................................................................................................................................................................................................................................................19200.0510000000001
...........................CAGACGG---------A--------CGGACGGACGG...........................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...................................................................................ACATGGCTCAATCGACTCGGCTC................................................................................................................................................................................................................................................................................................23200.0510100000000
...........................CAGACGG---------A--------CGGACGGACGGACGGAC.....................................................................................................................................................................................................................................................................................................................................25200.0510000000010
.......................................................ACGGACGGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................20200.0510000000001
.............G------------ACAGACGG---------A--------CGGACGGACGGA..........................................................................................................................................................................................................................................................................................................................................22200.0510000000100
.............G------------ACAGACGG---------A--------CGGACGGA..............................................................................................................................................................................................................................................................................................................................................18200.0511000000000
.............G------------ACAGACGG---------A--------CGGACGGACGGACGGAC.....................................................................................................................................................................................................................................................................................................................................27200.0510000000001
....G--------G------------ACAGACGG---------A--------CGGACGGACG............................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...........................................A--------CGGACGGACGGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................25200.0510000000010
...................................................................................ACATGGCTCAATCGACTCG....................................................................................................................................................................................................................................................................................................19200.0510000000010
....G--------G------------ACAGACGG---------A--------CGGACGGACGGAC.........................................................................................................................................................................................................................................................................................................................................24200.0510000000100
droPer2
AC--G--------G------------ACAGACGG---------A--------CGGACGGACGGACGGACAGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATGAAGAATATATATACTTTATGGGGTCAAAAACGATTCCTTCTGGACGTTAC--A------CACATCCACTTTTACCACAAATCTAATATACCCCAAT-ACTCAT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------CAGCT-----CACTCCGCAGC--------------CTGCAAGTTGAGCCGCACAGATGC---CGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................AGACGGACAGACAGACATGG.................................................................................................................................................................................................................................................................................................................20200.153030000
...........................................................................................................................................................................................................................AT----TTTGAGTATCGGGTAT---------------AAAAA-------------------------------------------------------------------C.................................................................24200.153010002
............................................................................................................................................................TCTGGACGTTAC--A------CACATCC..................................................................................................................................................................................................................20200.051001000
......................................................GACGGACGGACGGACAGACGGAC.............................................................................................................................................................................................................................................................................................................................23200.051000001
.......................................................ACGGACGGACGGACAGACGGACA............................................................................................................................................................................................................................................................................................................................23200.051000001
.......................................................ACGGACGGACGGACAGACGGACAG...........................................................................................................................................................................................................................................................................................................................24200.051010000
......................................................................................................................................................................AC--A------CACATCCACTTTTACCACAAATC..................................................................................................................................................................................................26200.051010000
........................................................................................................................................................................................................................CTCAT----TTTGAGTATCGGGT...........................................................................................................................................................19200.051000001
droAna3
TTGCGTAGAAACAG----ACAGACGGACAGACGG---------A--------CAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGC--A------CACT-------TTTGACCAAAATTATAATACCCTCT-------------GCA-----AGGGTAT---------------AATTATTTA-------------AGATTC------------T----------T-----ACA------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................CTGCGTTGC--A------CACT-------TTTGACC.......................................................................................................................................................................................................21201.70340340000
...........................................................................................................................................................TTCACTGCGTTGC--A------CACT-------TTTGAC........................................................................................................................................................................................................24200.306600000
........................................................................................................................................TAGGGTCGGAGATGTCTCCTT.............................................................................................................................................................................................................................................21200.306600000
............................................................................................TATCGACTCAGGAGGTGA............................................................................................................................................................................................................................................................................................18200.255500000
.........AACAG----ACAGACGGACAGACGG---------...............................................................................................................................................................................................................................................................................................................................................................21200.204040000
.............G----ACAGACGGACAGACGG---------A--------C.....................................................................................................................................................................................................................................................................................................................................................19200.153000003
..............................................................................................................................................................ACTGCGTTGC--A------CACT-------TTTGACCAAAA...................................................................................................................................................................................................26200.153300000
.............................................................................................ATCGACTCAGGAGGTGATCCTGAT.....................................................................................................................................................................................................................................................................................24200.102200000
..................................................................................GACATGCTCATATCGACTCAGGA.................................................................................................................................................................................................................................................................................................23200.102020000
.......................................................ACGGACAGACGGACAGACGGA..............................................................................................................................................................................................................................................................................................................................21200.102000002
.........................GACAGACGG---------A--------CAGACGGACAGACGGA......................................................................................................................................................................................................................................................................................................................................26200.102020000
............................................................................CAGACGGACATGCTCATATCG.........................................................................................................................................................................................................................................................................................................21200.102000020
......................................................................................TGCTCATATCGACTCAGGAGGTGATCCTG.......................................................................................................................................................................................................................................................................................29200.102200000
....................................................................CAGACGGACAGACGGACATGC.................................................................................................................................................................................................................................................................................................................21200.102020000
.................................G---------A--------CAGACGGACAGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................25200.051000001
........................................................................................CTCATATCGACTCAGGAGGTG.............................................................................................................................................................................................................................................................................................21200.051001000
..GCGTAGAAACAG----ACAGACGGACAGACG.........................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.......................................................................................................................................................CTCCTTCACTGCGTTGC--A------CACT-------TTTG..........................................................................................................................................................................................................26200.051010000
....................................................CAGACGGACAGACGGACAGAC.................................................................................................................................................................................................................................................................................................................................21200.051000001
.....................................................AGACGGACAGACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................22200.051100000
...........................CAGACGG---------A--------CAGACGGACAGACGG.......................................................................................................................................................................................................................................................................................................................................23200.051000010
.......................................................................................................................................ATAGGGTCGGAGATGTCTC................................................................................................................................................................................................................................................19200.051000100
.........................................................................GGACAGACGGACATGCTCATATCG.........................................................................................................................................................................................................................................................................................................24200.051100000
......................................................GACGGACAGACGGACAGACG................................................................................................................................................................................................................................................................................................................................20200.051010000
..............................................................................................................................ATATACTTTATAGGGTCGGAG.......................................................................................................................................................................................................................................................21200.051000100
droBip1
GC--GTAGAAACGG----ACA----GACAGACGG---------A--------CAGGCAGACGGACAGACAGACGGACAGACGGAAATGATTATATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGC--A------CACT-------TTCGGACAAAATTATAATACCCTCT-------------GCA-----AGGGTATAAAAACAC-----------------------------------ACCTACTTTTCC-AAA-------------AAAG-ACTATGG--------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
AT--G--------G----ACAGACGGACAGATGG---------A--------CAGATAGACAGATGGACAGACGGACAGCCGGACATAGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACATCTCCA------------------------------------A---------------------------------GCA-----AGTTTATAAAAATGTATAATAAA--CA--------------------T---TGTAC------T----------T---ATAG------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TT-----AAAACTG----AAA--------GACTA---------GTTTTCGCGGAAACGGACAGACGGACAGACGTACAGACG--------TATTCTGATTCTACTCGTGATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGC--A------AACA-------TCTGACTGAAATTATAATACCCTTTT-GCTC------TGCA-----AGGTTATAAAAATCA------------------------------ACTTT---TA--------AATATTCACTC---TTACA------------CACTTTGGGGGACCCCGTGGC--------------CCGG----GGGG-----------------CCSizeHit CountTotal NormTotal
No Reads
droEle1
TG-----CAT----------------ATAAACGG---------A--------CGGACAGACGGACAGACGGACGGACAGACGGACATGGCTAGATCGACTCGTCTAGTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGC--A------AACT-------TCTGACTGAAATTATAATACCCTCT-------------GCA-----AGGGTATAAAAACG------------------------------AAATTC------------T----------TGCATTACA------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCGTTCATACGGACAGACAGACAGACAGACAG---------A--------CGGACAGACAGACGGACAGACGGACAGACGGACATGGCTATATCGACTCGACTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTAC--A------TACT-------TTTGCACGAATACAATATACCCTTTT-ACTC------TACGAGTAACGGGTATAAAAATAG------------------------------GCCGA---AT--------AAGAATAACT--------------ACG----CACC-------------------------------TC----GA-GGATCTCGTCGTCGT---CTTCSizeHit CountTotal NormTotal
No Reads
droBia1
GT----TCCTACGG------------ACGGACGG---------A--------CAGACCGACAGACGGACAGACGTACAGGCGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATGAATAATAAATATACTTTATGTGGTCGGAAACTCTTTCT--------------------------------TTCCGACGAATCTAGTATACCCTTTT-ACTC------TTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGCGTTCATACAG----ACAGACAGACGGACAG---------A--------CGGACAGACAGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATATATAGTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTAC--A------TACT-------TTTGCACGAATCTAATATACCCTTTT-ACTC------TACGAGTAACGGGTAT---------------AACCATAAGAGCTAGAGCAGCCAAATTT------------T----------T----------------------------------TCACAGT--------------ATTCCATTGGGG--GCGTAGGCG-----CCCSizeHit CountTotal NormTotal
No Reads
droEug1
TAGCGTTCATACGGACGGACGGACTGACGGACGG---------A--------CGGACGGACGGACGGACGGACGGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAATATATATACTTTATAGGGTCGTAAAACCTTCCTTCTATCTGTTAG--A------TACT-------TTTCAACGAATCTAGTATACCCTTTT-ACTC------TACGAGTAACGGGTAT---------------AAATATGTT----A---------GA------------------------------GTACAG-ACGACAG---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AC--T--------T------------GTATTAGG---------A--------CAGACGGGCAGTCGGTCAGACGGACAAACGGACATAGCTAGATCGATTCGGCTATTGATCCTGATCAAGAATATATAGAAGT--------CTAT--------------------ATATATATAGTAGCA-------TATGT---------------------------------GCC-----ATAGTATAAGACCAC-----------------------------------ATATAC------T----------T-----ACA---------------------------------CACACAC------------------------------------ACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
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CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
C---------------------------ATATGG---------C--------TATAAGGACAGACGGACGGACCGACAGACAGACATGGCCAGATCGACTCGGTTATTGATCCTGATCAAGAATATAAG-------TGTGGTCGGAAACGTTTCCTTCTGCCTGTTAC--C------TACT-------TGTCAACGAATCTAGTACACCCTTTT-ACTC------T--------------TAAAAACCC-----------------------------------ATTAACTT----------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................GACAGACGGACGGACCGA..............................................................................................................................................................................................................................................................................................................................1820.50100100000000000000
.........................................................................................CCAGATCGACTCGGTTATTGATCC.........................................................................................................................................................................................................................................................................................2430.33100000010000000000
..............................................................................................................................................................................................TCAACGAATCTAGTACACCCTTTT-AC.................................................................................................................................................................................2630.33100000000010000000
............................................................................................GATCGACTCGGTTATTGATCCTGATC....................................................................................................................................................................................................................................................................................2640.25100010000000000000
..............................................................................GACAGACATGGCCAGA............................................................................................................................................................................................................................................................................................................1640.25100000001000000000
..............................................................................................TCGACTCGGTTATTGATCCTGATC....................................................................................................................................................................................................................................................................................2450.20100000000001000000
..............................................................................................TCGACTCGGTTATTGATCCTGAT.....................................................................................................................................................................................................................................................................................2350.20100000001000000000
...................................................................................................TCGGTTATTGATCCTGATCAAGAAT..............................................................................................................................................................................................................................................................................2560.17100000000001000000
...................................................................................................TCGGTTATTGATCCTGATCAAGAA...............................................................................................................................................................................................................................................................................2460.17100000010000000000
...................................................................................................TCGGTTATTGATCCTGATCAAGAATA.............................................................................................................................................................................................................................................................................2660.17100000001000000000
...................................................................................................TCGGTTATTGATCCTGATCAAGAATATA...........................................................................................................................................................................................................................................................................2860.17100000000010000000
........................................................................................GCCAGATCGACTCGGT..................................................................................................................................................................................................................................................................................................1660.17100000000001000000
..............................................................................................TCGACTCGGTTATTGATCCTGATCAAT.................................................................................................................................................................................................................................................................................27140.07100000001000000000
..............................................................................................TCGACTCGGTTATTGATCCTGATCAATC................................................................................................................................................................................................................................................................................28140.07100000001000000000
.......................................................................................................TTATTGATCCTGATCAAGA................................................................................................................................................................................................................................................................................19170.06100000010000000000
..........................................................GACAGACGGACGGAC.................................................................................................................................................................................................................................................................................................................................15200.05100000000000001000
droSec2
TTTTTTTCATATCG----ATAGAAAT------GTACAAGACTAA--------T-AAAAGACAGACGAACAGACAGGCAGACGGACATGTCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATT-GGTCGGAAACGCTTCCTTCAGCCTGTTAT--A------TACT-------TTTCAACGAATTTGGTATACCATTTT-ACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................TCGACTCGGCTATTGATCCTGATC....................................................................................................................................................................................................................................................................................24203.3066380280
..............................................................................................TCGACTCGGCTATTGATCCTGATCAAGA................................................................................................................................................................................................................................................................................28200.4088000
....................................................................................CATGTCCAGATCGACTCGGC..................................................................................................................................................................................................................................................................................................2080.2521001
..........ATCG----ATAGAAAT------GTACAAGACTAA--------T-A...................................................................................................................................................................................................................................................................................................................................................2640.2510010
....................................................................................CATGTCCAGATCGACTCGGCTT................................................................................................................................................................................................................................................................................................22110.1820101
..................................................................................GACATGTCCAGATCGACTCGG...................................................................................................................................................................................................................................................................................................2180.1310001
...................................................................................ACATGTCCAGATCGACTCGG...................................................................................................................................................................................................................................................................................................2080.1311000
....................................................................................CATGTCCAGATCGACTCGG...................................................................................................................................................................................................................................................................................................1980.1311000
....................................................................................CATGTCCAGATCGACTCGGCT.................................................................................................................................................................................................................................................................................................2180.1310100
..............................................................................................TCGACTCGGCTATTGATCCTG.......................................................................................................................................................................................................................................................................................21200.1020020
...................................................................................ACATGTCCAGATCGACTCGGCTT................................................................................................................................................................................................................................................................................................23110.0910100
...............................................................................................CGACTCGGCTATTGATCCTGATCAAGA................................................................................................................................................................................................................................................................................27200.0511000
..............................................................................................TCGACTCGGCTATTGATCCTGATCAACTT...............................................................................................................................................................................................................................................................................29200.0511000
..............................................................................................TCGACTCGGCTATTGATCCT........................................................................................................................................................................................................................................................................................20200.0510010
..........................................................................................CAGATCGACTCGGCTATTGAT...........................................................................................................................................................................................................................................................................................21200.0510001
..............................................................................................TCGACTCGGCTATTGATCCTGATCA...................................................................................................................................................................................................................................................................................25200.0510010
..................................................................................................CTCGGCTATTGATCCTGATCAAGAAT..............................................................................................................................................................................................................................................................................26200.0511000
..............................................................................................TCGACTCGGCTATTGATCCTGATCAA..................................................................................................................................................................................................................................................................................26200.0510010
..............................................................................................TCGACTCGGCTATTGATCCTGAT.....................................................................................................................................................................................................................................................................................23200.0510100
....................................................................................................CGGCTATTGATCCTGATCAAG.................................................................................................................................................................................................................................................................................21200.0510100
..........................................................................................CAGATCGACTCGGCTATTGT............................................................................................................................................................................................................................................................................................20200.0510100
...............................................................................................CGACTCGGCTATTGATCCTG.......................................................................................................................................................................................................................................................................................20200.0511000
droYak3
AC--G--------GACAGACGGACAGACGGACAG---------A--------CGGACAGACGGACAGACGGACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGTCTGTTAC--A------TACT-------TTTCAACGAATCTAGTATACCCTTTT-ACTC------TACGAGTAACGGGTAT---------------AATTAGT------------------CT-----------AC-TGC-------------AAAGTTTTGGGGCTGCATGA-----C--CCAACA--CACGGAAACGGATG---------GAGTCGCTTAGC--C---CCTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................TGCATGA-----C--CCAACA--CACGGAAACGGAT................................2750.60300000000003
...........................................................................................................................................................................................................................................................................................................................................GA-----C--CCAACA--CACGGAAACGGATG---------GA....................2550.20100100000000
.........................................................................................................................................................................................................................................................................................................................................................CA--CACGGAAACGGATG---------GAGTCGCTT.............2550.20101000000000
.......................................................................................................................................................................................................................................................................................................................................................AACA--CACGGAAACGGATG---------GAGT..................2250.20100010000000
..............................................................................................................................ATATACTTTATATGGTCGGAAACGCT..................................................................................................................................................................................................................................................26200.15300300000000
........................................................................................................................................................TCCTTCTGTCTGTTAC--A------TACT-------TTTC..........................................................................................................................................................................................................25200.10202000000000
....................................................................................................................................................................................T-------TTTCAACGAATCTAGTATACCCTTT.....................................................................................................................................................................................26200.10200200000000
..................................................................................................................................................AACGCTTCCTTCTGTCTGTTAC--A------TACT-------T.............................................................................................................................................................................................................28200.05101000000000
............................................................................................................................................................................................TTTCAACGAATCTAGTATAC..........................................................................................................................................................................................20200.05101000000000
........................................................................................GCCAAATCGACTCGGCTATTGATCCTGAC.....................................................................................................................................................................................................................................................................................29200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................GGAAACGGATG---------GAGTCGCT..............19200.05100000100000
......................................................................................................GCTATTGATCCTGATCAAGAATAT............................................................................................................................................................................................................................................................................24200.05101000000000
..........................................................................................................TTGATCCTGATCAAGAATATATAT........................................................................................................................................................................................................................................................................24200.05100100000000
...............................................................................................................................................................GTCTGTTAC--A------TACT-------TTTCAACGAATC..................................................................................................................................................................................................26200.05101000000000
..................................................................................................................................................................................ACT-------TTTCAACGAATCTAGTATACCC........................................................................................................................................................................................25200.05100100000000
....................................................................................................CGGCTATTGATCCTGATCAAGAAT..............................................................................................................................................................................................................................................................................24200.05110000000000
.....................................................................................................................................................................................................................T-ACTC------TACGAGTAACGGGTAT---------------AATTAG....................................................................................................................................27200.05101000000000
droEre2
CGCCGTTCATACGG----------------ACGG---------A--------CAGACAAACGGACAGACGGACGGACAGACGAACATGACCAGATCGACTCGGCTATTGATCCTGATCAAGAAAATATACACTTTATA-------------TTCCTTCTGCCTGTTAC--T------TAGT-------TTTCAACGAATCTAGTATACCCTTTT-ACTC------TTCGAGTAACGGGTAT---------------AACTAG-------------------------------------------CT--------------ACGATCGCACC------------------------------------------------------------TCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......TCATACGG----------------ACGG---------A--------CAGACAAACGGA..........................................................................................................................................................................................................................................................................................................................................2540.2510000010

Generated: 05/16/2015 at 10:15 PM